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1.
J Biomol Struct Dyn ; 41(2): 511-524, 2023 02.
Article in English | MEDLINE | ID: mdl-34825634

ABSTRACT

Yarrowia lipolytica is used as a model in this study to screen the potential candidates for inflating the innate lipid content of the cell. This study focuses on reducing the lipid degradation that occurs by the ß-oxidation process and discursively increasing the innate lipid content. Acyl-CoA oxidase-1, the primary and initial enzyme involved in the lipid degradation pathway, was selected as a target and blocked using various lipid analogous compounds. The blocking study was carried out using molecular docking and dynamic studies using computation tools. The largest active site pocket located around the Phe-394 amino acid of the target protein is taken as a site for docking. The molecular docking was performed for the selected compounds (citric acid, Finsolv, lactic acid, oxalic acid, Tween-80 and Triton X-100) and the docking results were compared with the outcome of the standard molecule (octadecatrienoic acid). Citric acid, Finsolv, Tween-80 and Triton X-100 were found to be the potential candidates for blocking the target molecule in the static condition using docking studies, revealing a minimum binding energy requirement than the standard molecule. They were further taken for a dynamics study using GROMACS software. The RMSD, RMSF, number of hydrogen bond interactions and radius of gyration of the complex molecules were studied in a dynamic approach for 100 ns. Citric acid has been found to be the potential hit compound to block acyl-CoA oxidase-1 enzyme with its maximum hydrogen interaction and minimum fluctuations. It also revealed out the minimum total energy requirement for the complex formation.


Subject(s)
Yarrowia , Acyl-CoA Oxidase/chemistry , Acyl-CoA Oxidase/metabolism , Yarrowia/metabolism , Molecular Docking Simulation , Octoxynol/metabolism , Polysorbates , Lipids , Citric Acid/metabolism
2.
Int J Biol Macromol ; 205: 203-210, 2022 Apr 30.
Article in English | MEDLINE | ID: mdl-35149097

ABSTRACT

Peroxisomal acyl-CoA oxidase 1a (ACOX1a) catalyzes the first and rate-limiting step of fatty acid oxidation, the conversion of acyl-CoAs to 2-trans-enoyl-CoAs. The dysfunction of human ACOX1a (hACOX1a) leads to deterioration of the nervous system manifesting in myeloneuropathy, hypotonia and convulsions. Crystal structures of hACOX1a in apo- and cofactor (FAD)-bound forms were solved at 2.00 and 2.09 Å resolution, respectively. hACOX1a exists as a homo-dimer with solvation free energy gain (ΔGo) of -44.7 kcal mol-1. Two FAD molecules bind at the interface of protein monomers completing the active sites. The substrate binding cleft of hACOX1a is wider compared to human mitochondrial very-long chain specific acyl-CoA dehydrogenase. Mutations (p.G178C, p.M278V and p.N237S) reported to cause dysfunctionality of hACOX1a are analyzed on its 3D-structure to understand structure-function related perturbations and explain the associated phenotypes.


Subject(s)
Acyl-CoA Oxidase , Flavin-Adenine Dinucleotide , Acyl-CoA Oxidase/chemistry , Acyl-CoA Oxidase/genetics , Catalytic Domain , Flavin-Adenine Dinucleotide/metabolism , Humans
3.
Clin Biochem ; 66: 83-90, 2019 Apr.
Article in English | MEDLINE | ID: mdl-30707886

ABSTRACT

OBJECTIVES: Our goal was to test whether an enzymatic, colorimetric assay, the WAKO NEFA kit, provides information equivalent to liquid chromatography (LC) LC-based measures of free fatty acid (FFA). DESIGN & METHODS: We reanalyzed nadir FFA samples from 109 volunteers from a previous study where we demonstrated that maximal suppression of FFA concentrations predicts metabolic abnormalities in humans; the results from the WAKO NEFA kit, which has been widely used for over three decades, could not replicate our findings. We conducted additional studies to directly compare results from this kit to our LC-mass spectrometry (LC/MS) method that was validated by our LC-UV detection method. RESULTS: Plasma samples with FFA concentrations ranging from 0.015 to 1.813 mmol/L were measured both by LC-mass spectrometry (LC/MS) and by the WAKO NEFA kit. Despite good overall agreement (R2 = 0.86), the slope was significantly different from 1.0 and the intercept was significantly different from zero. The results from the kit were especially discrepant with FFA concentrations <0.200 and >1.000 mmol/L. Some of the discrepancy was related to the use of oleate as the standard solution for the kit and the substrate specificity of the kit enzymes for different fatty acids. Despite attempts to improve the kit by modifying the reaction time, sample volume and the types of standard solutions, we could not obtain a satisfactory agreement between the WAKO NEFA results and LC/MS. CONCLUSIONS: The WAKO NEFA kit should not be used when high precision and accuracy of FFA concentrations over a wide range is required.


Subject(s)
Colorimetry/methods , Fatty Acids, Nonesterified/blood , Scientific Experimental Error , Acyl-CoA Oxidase/chemistry , Calibration , Chromatography, Liquid , Coenzyme A Ligases/chemistry , Fatty Acids, Nonesterified/chemistry , Humans , Hydrogen Peroxide/chemistry
4.
J Microbiol Biotechnol ; 28(4): 597-605, 2018 Apr 28.
Article in English | MEDLINE | ID: mdl-29429324

ABSTRACT

Acyl-CoA oxidases (ACOXs) play important roles in lipid metabolism, including peroxisomal fatty acid ß-oxidation by the conversion of acyl-CoAs to 2-trans-enoyl-CoAs. The yeast Yarrowia lipolytica can utilize fatty acids as a carbon source and thus has extensive biotechnological applications. The crystal structure of ACOX3 from Y. lipolytica (YlACOX3) was determined at a resolution of 2.5 Å. It contained two molecules per asymmetric unit, and the monomeric structure was folded into four domains; Nα, Nß, Cα1, and Cα2 domains. The cofactor flavin adenine dinucleotide was bound in the dimer interface. The substrate-binding pocket was located near the cofactor, and formed at the interface between the Nα, Nß, and Cα1 domains. Comparisons with other ACOX structures provided structural insights into how YlACOX has a substrate preference for short-chain acyl-CoA. In addition, the structure of YlACOX3 was compared with those of medium- and long-chain ACOXs, and the structural basis for their differences in substrate specificity was discussed.


Subject(s)
Acyl-CoA Oxidase/chemistry , Acyl-CoA Oxidase/metabolism , Fungal Proteins/chemistry , Fungal Proteins/metabolism , Oxidoreductases/chemistry , Oxidoreductases/metabolism , Yarrowia/enzymology , Acyl Coenzyme A/metabolism , Acyl-CoA Oxidase/genetics , Acyl-CoA Oxidase/isolation & purification , Amino Acid Sequence , Animals , Biotechnology , Caenorhabditis elegans/enzymology , Catalytic Domain , Cloning, Molecular , Coenzymes/chemistry , Crystallography, X-Ray , Escherichia coli/genetics , Fatty Acids/metabolism , Flavin-Adenine Dinucleotide , Fungal Proteins/genetics , Fungal Proteins/isolation & purification , Gene Expression Regulation, Fungal , Hydrophobic and Hydrophilic Interactions , Models, Molecular , Oxidation-Reduction , Oxidoreductases/genetics , Oxidoreductases/isolation & purification , Protein Conformation , Protein Domains , Sequence Alignment , Sequence Homology, Amino Acid , Substrate Specificity , Yarrowia/genetics
5.
Appl Biochem Biotechnol ; 185(4): 875-883, 2018 Aug.
Article in English | MEDLINE | ID: mdl-29372418

ABSTRACT

Acyl-coA oxidase (ACO) is an important flavoenzyme responsible for the first step of peroxisomal fatty acid ß-oxidation. In this study, the roles of Tyr232 and Tyr401 in flavin adenine dinucleotide (FAD) binding and enzyme catalysis of ACO were explored using site-directed mutagenesis. For mutant proteins, different levels of activity loss were observed. Wavelength scanning of Y232 and Y401 mutant proteins indicated that there is no FAD binding in Y401S and Y401G mutant ACO. Structure analysis indicated that the phenolic hydroxyl and benzene ring of the side chain could stabilize FAD binding through hydrogen bonds network and hydrophobic pocket formation. These results indicated that these two tyrosine residues play a critical role in the FAD binding of ACO.


Subject(s)
Acyl-CoA Oxidase/chemistry , Escherichia coli Proteins/chemistry , Escherichia coli/enzymology , Flavin-Adenine Dinucleotide/chemistry , Acyl-CoA Oxidase/metabolism , Escherichia coli Proteins/metabolism , Flavin-Adenine Dinucleotide/metabolism , Protein Binding , Tyrosine/chemistry , Tyrosine/metabolism
6.
Biochem Biophys Res Commun ; 495(2): 1628-1634, 2018 01 08.
Article in English | MEDLINE | ID: mdl-29198706

ABSTRACT

Acyl-CoA oxidase (ACOX) plays an important role in fatty acid degradation. The enzyme catalyzes the first reaction in peroxisomal fatty acid ß-oxidation by reducing acyl-CoA to 2-trans-enoyl-CoA. The yeast Yarrowia lipolytica is able to utilize fatty acids, fats, and oil as carbon sources to produce valuable bioproducts. We determined the crystal structure of ACOX1 from Y. lipolytica (YlACOX1) at a resolution of 2.5 Å. YlACOX1 forms a homodimer, and the monomeric structure is composed of four domains, the Nα, Nß, Cα1, and Cα2. The FAD cofactor is bound at the dimerization interface between the Nß- and Cα1-domains. The substrate-binding tunnel formed by the interface between the Nα-, Nß-, and Cα1-domains is located proximal to FAD. Amino acid and structural comparisons of YlACOX1 with other ACOXs show that the substrate-binding pocket of YlACOX1 is much smaller than that of the medium- or long-chain ACOXs but is rather similar to that of the short-chain ACOXs. Moreover, the hydrophilicity of residues constituting the end region of the substrate-binding pocket in YlACOX1 is quite similar to those in the short-chain ACOXs but different from those of the medium- or long-chain ACOXs. These observations provide structural insights how YlACOX1 prefers short-chain dicarboxylyl-CoAs as a substrate.


Subject(s)
Acyl-CoA Oxidase/chemistry , Acyl-CoA Oxidase/metabolism , Fungal Proteins/chemistry , Fungal Proteins/metabolism , Yarrowia/enzymology , Acyl Coenzyme A/chemistry , Acyl Coenzyme A/metabolism , Acyl-CoA Oxidase/genetics , Amino Acid Sequence , Catalytic Domain , Crystallography, X-Ray , Flavin-Adenine Dinucleotide/metabolism , Fungal Proteins/genetics , Hydrophobic and Hydrophilic Interactions , Isoenzymes/chemistry , Isoenzymes/genetics , Isoenzymes/metabolism , Models, Molecular , Protein Structure, Quaternary , Sequence Homology, Amino Acid , Substrate Specificity , Yarrowia/genetics
7.
J Nutr Biochem ; 41: 42-55, 2017 03.
Article in English | MEDLINE | ID: mdl-28040580

ABSTRACT

Interrelated effects of γ-linolenic acid (GLA) and sesamin, a sesame lignan, on hepatic fatty acid synthesis and oxidation were examined. Rats were fed experimental diets supplemented with 0 or 2 g/kg sesamin (1:1 mixture of sesamin and episesamin) and containing 100 g/kg of palm oil (saturated fat), safflower oil rich in linoleic acid, or oil of evening primrose origin containing 43% GLA (GLA oil) for 18 days. In rats fed sesamin-free diets, GLA oil, compared with other oils, increased the activity and mRNA levels of various enzymes involved in fatty acid oxidation, except for some instances. Sesamin greatly increased these parameters, and the enhancing effects of sesamin on peroxisomal fatty acid oxidation rate and acyl-CoA oxidase, enoyl-CoA hydratase and acyl-CoA thioesterase activities were more exaggerated in rats fed GLA oil than in the animals fed other oils. The combination of sesamin and GLA oil also synergistically increased the mRNA levels of some peroxisomal fatty acid oxidation enzymes and of several enzymes involved in fatty acid metabolism located in other cell organelles. In the groups fed sesamin-free diets, GLA oil, compared with other oils, markedly reduced the activity and mRNA levels of various lipogenic enzymes. Sesamin reduced all these parameters, except for malic enzyme, in rats fed palm and safflower oils, but the effects were attenuated in the animals fed GLA oil. These changes by sesamin and fat type accompanied profound alterations in serum lipid levels. This may be ascribable to the changes in apolipoprotein-B-containing lipoproteins.


Subject(s)
Dietary Fats, Unsaturated/therapeutic use , Dietary Supplements , Dioxoles/therapeutic use , Hyperlipidemias/prevention & control , Hypolipidemic Agents/therapeutic use , Lignans/therapeutic use , Liver/metabolism , gamma-Linolenic Acid/therapeutic use , Acyl-CoA Oxidase/antagonists & inhibitors , Acyl-CoA Oxidase/chemistry , Acyl-CoA Oxidase/genetics , Acyl-CoA Oxidase/metabolism , Animals , Dietary Fats, Unsaturated/adverse effects , Dietary Sucrose/adverse effects , Enoyl-CoA Hydratase/antagonists & inhibitors , Enoyl-CoA Hydratase/chemistry , Enoyl-CoA Hydratase/genetics , Enoyl-CoA Hydratase/metabolism , Fatty Acids/biosynthesis , Fatty Acids/blood , Fatty Acids/metabolism , Gene Expression Regulation, Enzymologic , Hyperlipidemias/blood , Hyperlipidemias/etiology , Hyperlipidemias/metabolism , Linoleic Acids/therapeutic use , Lipids/blood , Liver/enzymology , Male , Oenothera biennis , Oxidation-Reduction , Palm Oil/adverse effects , Peroxisomes/enzymology , Peroxisomes/metabolism , Plant Oils/therapeutic use , Rats, Sprague-Dawley , Safflower Oil/adverse effects , Thiolester Hydrolases/antagonists & inhibitors , Thiolester Hydrolases/chemistry , Thiolester Hydrolases/genetics , Thiolester Hydrolases/metabolism
8.
J Nutr Biochem ; 37: 76-82, 2016 11.
Article in English | MEDLINE | ID: mdl-27637001

ABSTRACT

Eicosapentaenoic acid (EPA), a n-3 long-chain polyunsaturated fatty acid, has been reported to have beneficial effects in obesity-associated metabolic disorders. The objective of the present study was to determine the effects of EPA on the regulation of genes involved in lipid metabolism, and the ability of EPA to induce mitochondrial biogenesis and beiging in subcutaneous adipocytes from overweight subjects. Fully differentiated human subcutaneous adipocytes from overweight females (BMI: 28.1-29.8kg/m2) were treated with EPA (100-200 µM) for 24 h. Changes in mRNA expression levels of genes involved in lipogenesis, fatty acid oxidation and mitochondrial biogenesis were determined by qRT-PCR. Mitochondrial content was evaluated using MitoTracker® Green stain. The effects on peroxisome proliferator-activated receptor gamma, co-activator 1 alpha (PGC-1α) and AMP-activated protein kinase (AMPK) were also characterized. EPA down-regulated lipogenic genes expression while up-regulated genes involved in fatty acid oxidation. Moreover, EPA-treated adipocytes showed increased mitochondrial content, accompanied by an up-regulation of nuclear respiratory factor-1, mitochondrial transcription factor A and cytochrome c oxidase IV mRNA expression. EPA also promoted the activation of master regulators of mitochondrial biogenesis such as sirtuin 1, PGC1-α and AMPK. In parallel, EPA induced the expression of genes that typify beige adipocytes such as fat determination factor PR domain containing 16, uncoupling protein 1 and cell death-inducing DFFA-like effector A, T-Box protein 1 and CD137. Our results suggest that EPA induces a remodeling of adipocyte metabolism preventing fat storage and promoting fatty acid oxidation, mitochondrial biogenesis and beige-like markers in human subcutaneous adipocytes from overweight subjects.


Subject(s)
Adipocytes, Beige/metabolism , Adipocytes, White/metabolism , Eicosapentaenoic Acid/metabolism , Gene Expression Regulation, Enzymologic , Mitochondrial Dynamics , Organelle Biogenesis , Subcutaneous Fat, Abdominal/metabolism , Acyl-CoA Oxidase/chemistry , Acyl-CoA Oxidase/genetics , Acyl-CoA Oxidase/metabolism , Adipocytes, Beige/enzymology , Adipocytes, Beige/pathology , Adipocytes, White/enzymology , Adipocytes, White/pathology , Adipogenesis , Biomarkers/metabolism , Body Mass Index , Carnitine O-Palmitoyltransferase/chemistry , Carnitine O-Palmitoyltransferase/genetics , Carnitine O-Palmitoyltransferase/metabolism , Cells, Cultured , Diacylglycerol O-Acyltransferase/antagonists & inhibitors , Diacylglycerol O-Acyltransferase/genetics , Diacylglycerol O-Acyltransferase/metabolism , Energy Metabolism , Fatty Acid Synthases/antagonists & inhibitors , Fatty Acid Synthases/genetics , Fatty Acid Synthases/metabolism , Female , Humans , Lipid Metabolism , Osmolar Concentration , Stearoyl-CoA Desaturase/antagonists & inhibitors , Stearoyl-CoA Desaturase/genetics , Stearoyl-CoA Desaturase/metabolism , Subcutaneous Fat, Abdominal/enzymology , Subcutaneous Fat, Abdominal/pathology
9.
Proc Natl Acad Sci U S A ; 113(36): 10055-60, 2016 09 06.
Article in English | MEDLINE | ID: mdl-27551084

ABSTRACT

Caenorhabditis elegans secretes ascarosides as pheromones to communicate with other worms and to coordinate the development and behavior of the population. Peroxisomal ß-oxidation cycles shorten the side chains of ascaroside precursors to produce the short-chain ascaroside pheromones. Acyl-CoA oxidases, which catalyze the first step in these ß-oxidation cycles, have different side chain-length specificities and enable C. elegans to regulate the production of specific ascaroside pheromones. Here, we determine the crystal structure of the acyl-CoA oxidase 1 (ACOX-1) homodimer and the ACOX-2 homodimer bound to its substrate. Our results provide a molecular basis for the substrate specificities of the acyl-CoA oxidases and reveal why some of these enzymes have a very broad substrate range, whereas others are quite specific. Our results also enable predictions to be made for the roles of uncharacterized acyl-CoA oxidases in C. elegans and in other nematode species. Remarkably, we show that most of the C. elegans acyl-CoA oxidases that participate in ascaroside biosynthesis contain a conserved ATP-binding pocket that lies at the dimer interface, and we identify key residues in this binding pocket. ATP binding induces a structural change that is associated with tighter binding of the FAD cofactor. Mutations that disrupt ATP binding reduce FAD binding and reduce enzyme activity. Thus, ATP may serve as a regulator of acyl-CoA oxidase activity, thereby directly linking ascaroside biosynthesis to ATP concentration and metabolic state.


Subject(s)
Acyl-CoA Oxidase/chemistry , Caenorhabditis elegans Proteins/chemistry , Caenorhabditis elegans/chemistry , Pheromones/chemistry , Acyl-CoA Oxidase/genetics , Acyl-CoA Oxidase/metabolism , Adenosine Triphosphate/chemistry , Adenosine Triphosphate/metabolism , Amino Acid Sequence , Animals , Binding Sites , Caenorhabditis elegans/enzymology , Caenorhabditis elegans Proteins/genetics , Caenorhabditis elegans Proteins/metabolism , Crystallography, X-Ray , Flavin-Adenine Dinucleotide/chemistry , Flavin-Adenine Dinucleotide/metabolism , Gene Expression , Isoenzymes/chemistry , Isoenzymes/genetics , Isoenzymes/metabolism , Kinetics , Models, Molecular , Mutation , Oxidation-Reduction , Pheromones/biosynthesis , Protein Binding , Protein Conformation, alpha-Helical , Protein Conformation, beta-Strand , Protein Interaction Domains and Motifs , Protein Multimerization , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Sequence Alignment , Substrate Specificity
10.
Open Biol ; 5(4): 140236, 2015 Apr.
Article in English | MEDLINE | ID: mdl-25854684

ABSTRACT

Peroxisomal matrix proteins are synthesized on cytosolic ribosomes and transported by the shuttling receptor PEX5 to the peroxisomal membrane docking/translocation machinery, where they are translocated into the organelle matrix. Under certain experimental conditions this protein import machinery has the remarkable capacity to accept already oligomerized proteins, a property that has heavily influenced current models on the mechanism of peroxisomal protein import. However, whether or not oligomeric proteins are really the best and most frequent clients of this machinery remain unclear. In this work, we present three lines of evidence suggesting that the peroxisomal import machinery displays a preference for monomeric proteins. First, in agreement with previous findings on catalase, we show that PEX5 binds newly synthesized (monomeric) acyl-CoA oxidase 1 (ACOX1) and urate oxidase (UOX), potently inhibiting their oligomerization. Second, in vitro import experiments suggest that monomeric ACOX1 and UOX are better peroxisomal import substrates than the corresponding oligomeric forms. Finally, we provide data strongly suggesting that although ACOX1 lacking a peroxisomal targeting signal can be imported into peroxisomes when co-expressed with ACOX1 containing its targeting signal, this import pathway is inefficient.


Subject(s)
Cytosol/metabolism , Models, Biological , Peroxisomes/metabolism , Signal Transduction , Acyl-CoA Oxidase/chemistry , Acyl-CoA Oxidase/genetics , Acyl-CoA Oxidase/metabolism , Animals , Blotting, Western , COS Cells , Chlorocebus aethiops , Humans , Mice , Microscopy, Fluorescence , Mutation , Peroxisome-Targeting Signal 1 Receptor , Protein Binding , Protein Multimerization , Protein Transport , Rats , Receptors, Cytoplasmic and Nuclear/genetics , Receptors, Cytoplasmic and Nuclear/metabolism , Urate Oxidase/chemistry , Urate Oxidase/genetics , Urate Oxidase/metabolism
11.
Insect Mol Biol ; 24(1): 82-92, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25558806

ABSTRACT

Fatty acyl-CoA reductases (FARs), the enzymes that catalyse reduction of a fatty acyl-CoA to the corresponding alcohol in insect pheromone biosynthesis, are postulated to play an important role in determining the proportion of each component in the pheromone blend. For the first time, we have isolated and characterized from the Egyptian cotton leaf worm Spodoptera littoralis (Lepidoptera: Noctuidae) a FAR cDNA (Slit-FAR1), which appeared to be expressed only in the pheromone gland and was undetectable in other female tissues, such as fat body, ovaries, wings, legs or thorax. The encoded protein has been successfully expressed in a recombinant system, and the recombinant enzyme is able to produce the intermediate fatty acid alcohols of the pheromone biosynthesis of S. littoralis from the corresponding acyl-CoA precursors. The kinetic variables Km and Vmax, which have been calculated for each acyl-CoA pheromone precursor, suggest that in S. littoralis pheromone biosynthesis other biosynthetic enzymes (e.g. desaturases, acetyl transferase) should also contribute to the final ratio of components of the pheromone blend. In a phylogenetic analysis, Slit-FAR1 appeared grouped in a cluster of other FARs involved in the pheromone biosynthesis of other insects, with little or non-specificity for the natural pheromone precursors.


Subject(s)
Acyl-CoA Oxidase/metabolism , Pheromones/biosynthesis , Spodoptera/enzymology , Acyl-CoA Oxidase/chemistry , Acyl-CoA Oxidase/genetics , Amino Acid Sequence , Animals , DNA, Complementary/metabolism , Exocrine Glands/enzymology , Fatty Alcohols/metabolism , Female , Molecular Sequence Data , Phylogeny , Polymerase Chain Reaction , Spodoptera/chemistry , Spodoptera/genetics
12.
Br J Nutr ; 112(6): 1034-40, 2014 Sep 28.
Article in English | MEDLINE | ID: mdl-25201308

ABSTRACT

Obesity has become a public health concern due to its positive association with the incidence of many diseases, and coffee components including chlorogenic acid (CGA) and caffeine have been demonstrated to play roles in the suppression of fat accumulation. To investigate the mechanism by which CGA and caffeine regulate lipid metabolism, in the present study, forty mice were randomly assigned to four groups and fed diets containing no CGA or caffeine, CGA, caffeine, or CGA+caffeine for 24 weeks. Body weight, intraperitoneal adipose tissue (IPAT) weight, and serum biochemical parameters were measured, and the activities and mRNA and protein expression of lipid metabolism-related enzymes were analysed. There was a decrease in the body weight and IPAT weight of mice fed the CGA+caffeine diet. There was a significant decrease in the serum and hepatic concentrations of total cholesterol, TAG and leptin of mice fed the CGA+caffeine diet. The activities of carnitine acyltransferase (CAT) and acyl-CoA oxidase (ACO) were increased in mice fed the caffeine and CGA+caffeine diets, while the activity of fatty acid synthase (FAS) was suppressed in those fed the CGA+caffeine diet. The mRNA expression levels of AMP-activated protein kinase (AMPK), CAT and ACO were considerably up-regulated in mice fed the CGA+caffeine diet, while those of PPARγ2 were down-regulated. The protein expression levels of AMPK were increased and those of FAS were decreased in mice fed the CGA+caffeine diet. These results indicate that CGA+caffeine suppresses fat accumulation and body weight gain by regulating the activities and mRNA and protein expression levels of hepatic lipid metabolism-related enzymes and that these effects are stronger than those exerted by CGA and caffeine individually.


Subject(s)
Caffeine/therapeutic use , Chlorogenic Acid/therapeutic use , Dietary Supplements , Fatty Liver/prevention & control , Gene Expression Regulation, Enzymologic , Liver/metabolism , Acyl-CoA Oxidase/chemistry , Acyl-CoA Oxidase/genetics , Acyl-CoA Oxidase/metabolism , Adiposity , Animals , Carnitine Acyltransferases/chemistry , Carnitine Acyltransferases/genetics , Carnitine Acyltransferases/metabolism , Enzyme Induction , Enzyme Repression , Fatty Acid Synthases/antagonists & inhibitors , Fatty Acid Synthases/genetics , Fatty Acid Synthases/metabolism , Fatty Liver/metabolism , Fatty Liver/pathology , Female , Hyperlipidemias/prevention & control , Intra-Abdominal Fat/metabolism , Intra-Abdominal Fat/pathology , Leptin/blood , Leptin/metabolism , Lipid Metabolism , Liver/enzymology , Liver/pathology , Mice , Mice, Inbred ICR , Organ Size , Random Allocation
13.
Plant Physiol Biochem ; 46(3): 292-301, 2008 Mar.
Article in English | MEDLINE | ID: mdl-18272379

ABSTRACT

Acyl-CoA oxidases (in peroxisomes) and acyl-CoA dehydrogenases (in mitochondria) catalyse the first step in fatty acid beta-oxidation, the pathway responsible for lipid catabolism and plant hormone biosynthesis. The interplay and differences between peroxisomal and mitochondrial beta-oxidation processes are highlighted by the variation in the enzymes involved. Structure and sequence comparisons are made with a focus on the enzyme's mechanistic means to control electron transfer paths, reactivity towards molecular oxygen, and spatial and architectural requirements for substrate discrimination.


Subject(s)
Acyl-CoA Oxidase/chemistry , Acyl-CoA Oxidase/metabolism , Plant Proteins/chemistry , Plant Proteins/metabolism , Acyl-CoA Dehydrogenases/chemistry , Acyl-CoA Dehydrogenases/genetics , Acyl-CoA Dehydrogenases/metabolism , Acyl-CoA Oxidase/genetics , Amino Acid Sequence , Molecular Sequence Data , Plant Proteins/genetics , Protein Structure, Secondary , Structure-Activity Relationship , Substrate Specificity
14.
Biochem Biophys Res Commun ; 360(2): 314-9, 2007 Aug 24.
Article in English | MEDLINE | ID: mdl-17603022

ABSTRACT

Human acyl-CoA oxidase 1 (ACOX1) is a rate-limiting enzyme in peroxisomal fatty acids beta-oxidation and its deficiency is associated with a lethal, autosomal recessive disease, called pseudoneonatal-adrenoleukodystrophy. Two mRNA variants, transcribed from a single gene encode ACOX1a or ACOX1b isoforms, respectively. Recently, a mutation in a splice site has been reported [H. Rosewich, H.R. Waterham, R.J. Wanders, S. Ferdinandusse, M. Henneke, D. Hunneman, J. Gartner, Pitfall in metabolic screening in a patient with fatal peroxisomal beta-oxidation defect, Neuropediatrics 37 (2006) 95-98.], which results in the defective peroxisomal fatty acids beta-oxidation. Here, we show that these mRNA splice variants are expressed differentially in human liver. We investigated the biochemical role of the two human ACOX1 isoforms by heterologous expression of the catalytically active ACOX1a and ACOX1b enzymes in Escherichia coli. ACOX1a seems to be more labile and exhibits only 50% specific activity toward palmitoyl-CoA as compared to ACOX1b.


Subject(s)
Acyl-CoA Oxidase/chemistry , Acyl-CoA Oxidase/genetics , Liver/enzymology , Enzyme Activation , Enzyme Stability , Humans , Isoenzymes/chemistry , Isoenzymes/genetics , Molecular Weight
15.
J Biol Chem ; 281(41): 31012-20, 2006 Oct 13.
Article in English | MEDLINE | ID: mdl-16887802

ABSTRACT

Plants produce a unique peroxisomal short chain-specific acyl-CoA oxidase (ACX4) for beta-oxidation of lipids. The short chain-specific oxidase has little resemblance to other peroxisomal acyl-CoA oxidases but has an approximately 30% sequence identity to mitochondrial acyl-CoA dehydrogenases. Two biochemical features have been linked to structural properties by comparing the structures of short chain-specific Arabidopsis thaliana ACX4 with and without a substrate analogue bound in the active site to known acyl-CoA oxidases and dehydrogenase structures: (i) a solvent-accessible acyl binding pocket is not required for oxygen reactivity, and (ii) the oligomeric state plays a role in substrate pocket architecture but is not linked to oxygen reactivity. The structures indicate that the acyl-CoA oxidases may encapsulate the electrons for transfer to molecular oxygen by blocking the dehydrogenase substrate interaction site with structural extensions. A small binding pocket observed adjoining the flavin adenine dinucleotide N5 and C4a atoms could increase the number of productive encounters between flavin adenine dinucleotide and O2.


Subject(s)
Acyl-CoA Dehydrogenase/chemistry , Acyl-CoA Oxidase/chemistry , Arabidopsis Proteins/chemistry , Arabidopsis/enzymology , Electrons , Models, Molecular , Oxygen/chemistry , Plant Proteins/chemistry , Protein Binding , Protein Conformation , Protein Structure, Secondary , Protein Structure, Tertiary , Static Electricity , Substrate Specificity
16.
Acta Crystallogr D Biol Crystallogr ; 62(Pt 6): 683-6, 2006 Jun.
Article in English | MEDLINE | ID: mdl-16699197

ABSTRACT

The flavoenzyme acyl-CoA oxidase (ACX) catalyzes the first committed step in beta-oxidation and is required for the biosynthesis of jasmonic acid, a signaling molecule involved in plant defense. Recently, a mutant in tomato was identified that is deficient in jasmonic acid production and compromised in its wound response. This results from a single point mutation in acx1, which causes the conserved residue Thr138 to be substituted by isoleucine. To understand the structural basis for this mutation, the crystal structure of LeACX1 was determined to 2.74 Angstrom resolution by molecular replacement. Unexpectedly, an unusual packing arrangement was observed in which three monomers of LeACX1 are present in the asymmetric unit. Although the tertiary structure of LeACX1 is essentially similar to the previously determined structures of ACX enzymes, the packing within the unit cells is distinctly different.


Subject(s)
Acyl-CoA Oxidase/chemistry , Models, Molecular , Plant Proteins/chemistry , Solanum lycopersicum/enzymology , Acyl-CoA Oxidase/genetics , Amino Acid Substitution , Crystallography, X-Ray , Plant Proteins/genetics , Point Mutation
17.
J Biochem ; 139(4): 789-95, 2006 Apr.
Article in English | MEDLINE | ID: mdl-16672280

ABSTRACT

The three-dimensional structure of rat-liver acyl-CoA oxidase-II (ACO-II) in a complex with a C12-fatty acid was solved by the molecular replacement method based on the uncomplexed ACO-II structure. The crystalline form of the complex was obtained by cocrystallization of ACO-II with dodecanoyl-CoA. The crystalline complex possessed, in the active-site crevice, only the fatty acid moiety that had been formed through hydrolysis of the thioester bond. The overall dimeric structure and the folding pattern of each subunit are essentially superimposable on those of uncomplexed ACO-II. The active site including the flavin ring of FAD, the crevice embracing the fatty acyl moiety, and adjacent amino acid side chains are superimposably conserved with the exception of Glu421, whose carboxylate group is tilted away to accommodate the fatty acid. One of the carboxyl oxygens of the bound fatty acid is hydrogen-bonded to the amide hydrogen of Glu421, the presumed catalytic base, and to the ribityl 2'-hydroxyl group of FAD. This hydrogen-bonding network correlates well with the substrate recognition/activation in acyl-CoA dehydrogenase. The binding mode of C12-fatty acid suggests that the active site does not close upon substrate binding, but remains spacious during the entire catalytic process, the oxygen accessibility in the oxidative half-reaction thereby being maintained.


Subject(s)
Acyl-CoA Dehydrogenases/chemistry , Acyl-CoA Oxidase/chemistry , Fatty Acids/chemistry , Liver/enzymology , Acyl-CoA Dehydrogenases/metabolism , Acyl-CoA Oxidase/metabolism , Animals , Binding Sites , Catalytic Domain , Crystallography, X-Ray/methods , Fatty Acids/metabolism , Hydrogen Bonding , Models, Chemical , Oxidation-Reduction , Oxygen/chemistry , Oxygen/metabolism , Protein Conformation , Protein Structure, Secondary , Rats , Substrate Specificity
18.
Acta Crystallogr Sect F Struct Biol Cryst Commun ; 61(Pt 11): 1017-9, 2005 Nov 01.
Article in English | MEDLINE | ID: mdl-16511223

ABSTRACT

Fatty acid-CoA racemase plays an important role in the beta-oxidation of branched-chain fatty acids and fatty-acid derivatives as it catalyzes the conversion of several (2R)-branched-chain fatty acid-CoAs to their (2S)-stereoisomers. Fatty acid-CoA racemase from Mycobacterium tuberculosis H37Rv has been purified to homogeneity and crystallized by the hanging-drop vapour-diffusion method with polyethylene glycol 4000 as precipitant. The crystals belong to the trigonal space group P3(1) or P3(2), with unit-cell parameters a = b = 109.56, c = 147.97 A. The asymmetric unit contains six monomers, corresponding to a VM value of 2.15 A3 Da(-1). A complete native data set has been collected at 2.7 A resolution using a synchrotron-radiation source.


Subject(s)
Acyl-CoA Oxidase/chemistry , Oxygen/metabolism , Racemases and Epimerases/chemistry , Acyl-CoA Oxidase/metabolism , Crystallization , Crystallography, X-Ray , Fatty Acids/metabolism , Mycobacterium tuberculosis/metabolism , Polyethylene Glycols/chemistry , Protein Conformation , Racemases and Epimerases/metabolism , Recombinant Proteins , Stereoisomerism , Synchrotrons , X-Ray Diffraction
19.
J Mol Biol ; 345(3): 487-500, 2005 Jan 21.
Article in English | MEDLINE | ID: mdl-15581893

ABSTRACT

The peroxisomal acyl-CoA oxidase family plays an essential role in lipid metabolism by catalyzing the conversion of acyl-CoA into trans-2-enoyl-CoA during fatty acid beta-oxidation. Here, we report the X-ray structure of the FAD-containing Arabidopsis thaliana acyl-CoA oxidase 1 (ACX1), the first three-dimensional structure of a plant acyl-CoA oxidase. Like other acyl-CoA oxidases, the enzyme is a dimer and it has a fold resembling that of mammalian acyl-CoA oxidase. A comparative analysis including mammalian acyl-CoA oxidase and the related tetrameric mitochondrial acyl-CoA dehydrogenases reveals a substrate-binding architecture that explains the observed preference for long-chained, mono-unsaturated substrates in ACX1. Two anions are found at the ACX1 dimer interface and for the first time the presence of a disulfide bridge in a peroxisomal protein has been observed. The functional differences between the peroxisomal acyl-CoA oxidases and the mitochondrial acyl-CoA dehydrogenases are attributed to structural differences in the FAD environments.


Subject(s)
Acyl-CoA Oxidase/metabolism , Arabidopsis/enzymology , Lipid Metabolism , Acyl-CoA Oxidase/chemistry , Amino Acid Sequence , Models, Molecular , Molecular Sequence Data , Protein Conformation , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Sequence Homology, Amino Acid
20.
Acta Crystallogr D Biol Crystallogr ; 60(Pt 6): 1125-8, 2004 Jun.
Article in English | MEDLINE | ID: mdl-15159576

ABSTRACT

Two members of the acyl-CoA oxidase family from Arabidopsis thaliana have been cloned, overexpressed, purified and crystallized. Long-chain-specific acyl-CoA oxidase 1 crystals are characterized by a large variation in diffraction quality and non-isomorphous unit-cell parameters. The best crystals diffract to 2.0 angstrom using synchrotron radiation, have unit-cell parameters a = 85.2, b = 117.0, c = 131.0 angstrom, alpha = beta = gamma = 90 degrees and show P2(1)2(1)2(1) symmetry. There are two polypeptide chains in the asymmetric unit. Short-chain-specific acyl-CoA oxidase 4 crystals are trigonal, space group P3(1)21/P3(2)21, with unit-cell parameters a = b = 198.7, c = 149.6 angstroms. The crystals are most likely to contain six polypeptide chains in the asymmetric unit. Freshly prepared acyl-CoA oxidase 4 crystals diffract to 3.9 angstroms at cryogenic temperature at beamline I711, Max-Lab, but the diffraction quality degenerates after storage for only a few days in the crystallization drop. A selenomethionine-substituted form of the protein was produced and two-wavelength MAD data were collected at beamline BW7A, EMBL Outstation, Hamburg.


Subject(s)
Acyl-CoA Oxidase/chemistry , Arabidopsis Proteins/chemistry , Arabidopsis/enzymology , Crystallography, X-Ray/methods , Peroxisomes/enzymology , Acyl-CoA Oxidase/genetics , Arabidopsis Proteins/genetics , Cloning, Molecular , Genes, Plant , Models, Chemical , Peptides/chemistry , Plasmids/metabolism , Synchrotrons , Temperature , Time Factors , X-Ray Diffraction
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