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1.
Environ Res ; 220: 115240, 2023 03 01.
Article in English | MEDLINE | ID: mdl-36621544

ABSTRACT

In order to solve nitrogen pollution in environmental water, two heterotrophic nitrifying and aerobic denitrifying strains isolated from acid paddy soil were identified as Achromobacter sp. strain HNDS-1 and Enterobacter sp. strain HNDS-6 respectively. Strain HNDS-1 and strain HNDS-6 exhibited amazing ability to nitrogen removal. When (NH4)2SO4, KNO3, NaNO2 were used as nitrogen resource respectively, the NH4+-N, NO3--N, NO2--N removal efficiencies of strain HNDS-1 were 93.31%, 89.47%, and 100% respectively, while those of strain HNDS-6 were 82.39%, 96.92%, and 100%. And both of them could remove mixed nitrogen effectively in low C/N (C/N = 5). Strain HNDS-1 could remove 76.86% NH4+-N and 75.13% NO3--N. And strain HNDS-6 can remove 65.07% NH4+-N and 78.21% NO3--N. A putative ammonia monooxygenase, nitrite reductase, nitrate reductase, assimilatory nitrate reductase, nitrate/nitrite transport protein and nitric oxide reductase of strain HNDS-1, while hydroxylamine reductase, nitrite reductase, nitrate reductase, assimilatory nitrate reductase, nitrate/nitrite transport protein, and nitric oxide reductase of strain HNDS-6 were identified by genomic analysis. DNA-SIP analysis showed that genes Nxr, narG, nirK, norB, nosZ were involved in nitrogen removal pathway, which indicates that the denitrification pathway of strain HNDS-1 and strain HNDS-6 was NO3-→NO2-→NO→N2O→N2 during NH4+-N removal process. And the nitrification pathway of strain HNDS-1 and strain HNDS-6 was NO2-→NO3-, but the nitrification pathway of NH4+→ NO2- needs further studies.


Subject(s)
Achromobacter , Denitrification , Enterobacter , Nitrification , Achromobacter/genetics , Achromobacter/metabolism , Aerobiosis/genetics , Aerobiosis/physiology , Denitrification/genetics , Denitrification/physiology , Enterobacter/genetics , Enterobacter/metabolism , Nitrates/metabolism , Nitrification/genetics , Nitrification/physiology , Nitrite Reductases/metabolism , Nitrites/metabolism , Nitrogen/metabolism , Nitrogen Dioxide/metabolism
2.
Viruses ; 13(7)2021 07 15.
Article in English | MEDLINE | ID: mdl-34372580

ABSTRACT

Most of the defective/non-infectious enteric phages and viruses that end up in wastewater originate in human feces. Some of the causes of this high level of inactivity at the host stage are unknown. There is a significant gap between how enteric phages are environmentally transmitted and how we might design molecular tools that would only detect infectious ones. Thus, there is a need to explain the low proportion of infectious viral particles once replicated. By analyzing lysis plaque content, we were able to confirm that, under aerobic conditions, Escherichia coli produce low numbers of infectious MS2 phages (I) than the total number of phages indicated by the genome copies (G) with an I/G ratio of around 2%. Anaerobic conditions of replication and ROS inhibition increase the I/G ratio to 8 and 25%, respectively. These data cannot only be explained by variations in the total numbers of MS2 phages produced or in the metabolism of E. coli. We therefore suggest that oxidative damage impacts the molecular replication and assembly of MS2 phages.


Subject(s)
Anaerobiosis/physiology , Levivirus/metabolism , Virus Replication/physiology , Aerobiosis/physiology , Coliphages/genetics , Escherichia coli/metabolism , Escherichia coli/virology , Escherichia coli Proteins/metabolism , Feces/virology , Humans , Levivirus/pathogenicity , Reactive Oxygen Species/metabolism , Virulence
4.
Proc Natl Acad Sci U S A ; 118(1)2021 01 05.
Article in English | MEDLINE | ID: mdl-33443160

ABSTRACT

Aerobic glycolysis (AG), that is, the nonoxidative metabolism of glucose, contributes significantly to anabolic pathways, rapid energy generation, task-induced activity, and neuroprotection; yet high AG is also associated with pathological hallmarks such as amyloid-ß deposition. An important yet unresolved question is whether and how the metabolic benefits and risks of brain AG is structurally shaped by connectome wiring. Using positron emission tomography and magnetic resonance imaging techniques as well as computational models, we investigate the relationship between brain AG and the macroscopic connectome. Specifically, we propose a weighted regional distance-dependent model to estimate the total axonal projection length of a brain node. This model has been validated in a macaque connectome derived from tract-tracing data and shows a high correspondence between experimental and estimated axonal lengths. When applying this model to the human connectome, we find significant associations between the estimated total axonal projection length and AG across brain nodes, with higher levels primarily located in the default-mode and prefrontal regions. Moreover, brain AG significantly mediates the relationship between the structural and functional connectomes. Using a wiring optimization model, we find that the estimated total axonal projection length in these high-AG regions exhibits a high extent of wiring optimization. If these high-AG regions are randomly rewired, their total axonal length and vulnerability risk would substantially increase. Together, our results suggest that high-AG regions have expensive but still optimized wiring cost to fulfill metabolic requirements and simultaneously reduce vulnerability risk, thus revealing a benefit-risk balancing mechanism in the human brain.


Subject(s)
Aerobiosis/physiology , Brain/metabolism , Glycolysis/physiology , Adult , Connectome/methods , Databases, Factual , Female , Humans , Magnetic Resonance Imaging , Male , Nerve Net/metabolism , Neural Pathways , Positron-Emission Tomography
5.
Nat Commun ; 11(1): 5985, 2020 11 25.
Article in English | MEDLINE | ID: mdl-33239636

ABSTRACT

The spontaneous self-assembly of multicellular ensembles into living materials with synergistic structure and function remains a considerable challenge in biotechnology and synthetic biology. Here, we exploit the aqueous two-phase separation of dextran-in-PEG emulsion micro-droplets for the capture, spatial organization and immobilization of algal cells or algal/bacterial cell communities to produce discrete multicellular spheroids capable of both aerobic (oxygen producing) and hypoxic (hydrogen producing) photosynthesis in daylight under air. We show that localized oxygen depletion results in hydrogen production from the core of the algal microscale reactor, and demonstrate that enhanced levels of hydrogen evolution can be achieved synergistically by spontaneously enclosing the photosynthetic cells within a shell of bacterial cells undergoing aerobic respiration. Our results highlight a promising droplet-based environmentally benign approach to dispersible photosynthetic microbial micro-reactors comprising segregated cellular micro-niches with dual functionality, and provide a step towards photobiological hydrogen production under aerobic conditions.


Subject(s)
Bioreactors/microbiology , Hydrogen/metabolism , Industrial Microbiology/methods , Microbiota/physiology , Oxygen/metabolism , Aerobiosis/physiology , Cell Hypoxia/physiology , Chlorella/metabolism , Escherichia coli/metabolism , Photosynthesis/physiology , Renewable Energy
6.
PLoS One ; 15(10): e0240866, 2020.
Article in English | MEDLINE | ID: mdl-33108389

ABSTRACT

INTRODUCTION: Aerobic capacity is a strong predictor of cardiovascular mortality. Whether aerobic capacity influences myocardial ischemia and reperfusion (IR) injury is unknown. PURPOSE: To investigate the impact of intrinsic differences in aerobic capacity and the cardioprotective potential on IR injury. METHODS: We studied hearts from rats developed by selective breeding for high (HCR) or low (LCR) capacity for treadmill running. The rats were randomized to: (1) control, (2) local ischemic preconditioning (IPC) or (3) remote ischemic preconditioning (RIC) followed by 30 minutes of ischemia and 120 minutes of reperfusion in an isolated perfused heart model. The primary endpoint was infarct size. Secondary endpoints included uptake of labelled glucose, content of selected mitochondrial proteins in skeletal and cardiac muscle, and activation of AMP-activated kinase (AMPK). RESULTS: At baseline, running distance was 203±7 m in LCR vs 1905±51 m in HCR rats (p<0.01). Infarct size was significantly lower in LCR than in HCR controls (49±5% vs 68±5%, p = 0.04). IPC reduced infarct size by 47% in LCR (p<0.01) and by 31% in HCR rats (p = 0.01). RIC did not modulate infarct size (LCR: 52±5, p>0.99; HCR: 69±6%, p>0.99, respectively). Phosphorylaion of AMPK did not differ between LCR and HCR controls. IPC did not modulate cardiac phosphorylation of AMPK. Glucose uptake during reperfusion was similar in LCR and HCR rats. IPC increased glucose uptake during reperfusion in LCR animals (p = 0.02). Mitochondrial protein content in skeletal muscle was lower in LCR than in HCR (0.77±0.10 arbitrary units (AU) vs 1.09±0.07 AU, p = 0.02), but not in cardiac muscle. CONCLUSION: Aerobic capacity is associated with altered myocardial sensitivity to IR injury, but the cardioprotective effect of IPC is not. Glucose uptake, AMPK activation immediately prior to ischemia and basal mitochondrial protein content in the heart seem to be of minor importance as underlying mechanisms for the cardioprotective effects.


Subject(s)
Aerobiosis/physiology , Ischemic Preconditioning, Myocardial , Myocardial Reperfusion Injury/metabolism , AMP-Activated Protein Kinases/metabolism , Animals , Glucose/metabolism , Mitochondrial Proteins/metabolism , Models, Animal , Muscle, Skeletal/metabolism , Myocardium/metabolism , Rats , Running/physiology
7.
Nutrients ; 12(9)2020 Aug 19.
Article in English | MEDLINE | ID: mdl-32824885

ABSTRACT

Beta-alanine supplementation (BA) has a positive impact on physical performance. However, evidence showing a benefit of this amino acid in aerobic-anaerobic transition zones is scarce and the results controversial. The aim of this systematic review and meta-analysis is to analyze the effects of BA supplementation on physical performance in aerobic-anaerobic transition zones. At the same time, the effect of different dosages and durations of BA supplementation were identified. The search was designed in accordance with the PRISMA® guidelines for systematic reviews and meta-analyses and performed in Web of Science (WOS), Scopus, SPORTDiscus, PubMed, and MEDLINE between 2010 and 2020. The methodological quality and risk of bias were evaluated with the Cochrane Collaboration tool. The main variables were the Time Trial Test (TTT) and Time to Exhaustion (TTE) tests, the latter separated into the Limited Time Test (LTT) and Limited Distance Test (LDT). The analysis was carried out with a pooled standardized mean difference (SMD) through Hedges' g test (95% CI). Nineteen studies were included in the systematic review and meta-analysis, revealing a small effect for time in the TTT (SMD, -0.36; 95% CI, -0.87-0.16; I2 = 59%; p = 0.010), a small effect for LTT (SMD, 0.25; 95% CI, -0.01-0.51; I2 = 0%; p = 0.53), and a large effect for LDT (SMD, 4.27; 95% CI, -0.25-8.79; I2 = 94%; p = 0.00001). BA supplementation showed small effects on physical performance in aerobic-anaerobic transition zones. Evidence on acute supplementation is scarce (one study); therefore, exploration of acute supplementation with different dosages and formats on physical performance in aerobic-anaerobic transition zones is needed.


Subject(s)
Aerobiosis/physiology , Anaerobiosis/physiology , Dietary Supplements , Physical Functional Performance , Sports Nutritional Physiological Phenomena/physiology , beta-Alanine/administration & dosage , Aerobiosis/drug effects , Anaerobiosis/drug effects , Humans , beta-Alanine/pharmacology
8.
Nat Metab ; 2(9): 902-917, 2020 09.
Article in English | MEDLINE | ID: mdl-32694831

ABSTRACT

Increased aerobic exercise capacity, as a result of exercise training, has important health benefits. However, some individuals are resistant to improvements in exercise capacity, probably due to undetermined genetic and environmental factors. Here, we show that exercise-induced improvements in aerobic capacity are blunted and aerobic remodelling of skeletal muscle is impaired in several animal models associated with chronic hyperglycaemia. Our data point to chronic hyperglycaemia as a potential negative regulator of aerobic adaptation, in part, via glucose-mediated modifications of the extracellular matrix, impaired vascularization and aberrant mechanical signalling in muscle. We also observe low exercise capacity and enhanced c-Jun N-terminal kinase activation in response to exercise in humans with impaired glucose tolerance. Our work indicates that current shifts in dietary and metabolic health, associated with increasing incidence of hyperglycaemia, might impair muscular and organismal adaptations to exercise training, including aerobic capacity as one of its key health outcomes.


Subject(s)
Adaptation, Physiological/physiology , Aerobiosis/physiology , Exercise/physiology , Hyperglycemia/physiopathology , Muscle, Skeletal/physiopathology , Physical Conditioning, Animal/physiology , Signal Transduction , Adult , Anaerobic Threshold/physiology , Animals , Endothelial Cells/physiology , Enzyme Activation , Female , Glucose Intolerance/metabolism , Humans , JNK Mitogen-Activated Protein Kinases/metabolism , Male , Mice , Rats , Young Adult
9.
Sci Rep ; 10(1): 6834, 2020 04 22.
Article in English | MEDLINE | ID: mdl-32321984

ABSTRACT

The present study aimed to evaluate the chemical composition, profile and fermentative losses, microbial population and the aerobic stability of mixed silages of cactus pear and gliricidia. The treatments corresponded to the addition levels of gliricidia (Gliricidia sepium (Jacq.) Steud), in the silages of cactus pear (Opuntia ficus indica Mill.), at ratios 0%, 25%, 50%, 75% and 100% gliricidia. The data were subjected to analysis of variance and regression to evaluate the effect of the addition levels of gliricidia. The average related to the opening days were compared by the Tukey's test and the average hours of exposure to air were compared by the Student's t-test. The addition of gliricidia in cactus pear silage provided a linear increasing effect for pH, crude protein (CP), neutral detergent fibre (NDF), acid detergent fibre (ADF), acid detergent lignin (ADL), neutral detergent insoluble protein (NDIP), and increased aerobic stability (AS). The highest dry matter recovery was estimated in the silages with 58% gliricidia. Based on the fermentative, chemical composition and silage losses, all the silages tested were adequate. However, considering aerobic stability, the addition of at least 25% gliricidia is recommended to provide the animal a feed with important quality and high nutritional value.


Subject(s)
Fabaceae/chemistry , Microbial Consortia/physiology , Opuntia/chemistry , Silage/microbiology , Aerobiosis/physiology
10.
Sci Rep ; 10(1): 5878, 2020 04 03.
Article in English | MEDLINE | ID: mdl-32246034

ABSTRACT

For any dynamical system, like living organisms, an attractor state is a set of variables or mechanisms that converge towards a stable system behavior despite a wide variety of initial conditions. Here, using multi-dimensional statistics, we investigate the global gene expression attractor mechanisms shaping anaerobic to aerobic state transition (AAT) of Escherichia coli in a bioreactor at early times. Out of 3,389 RNA-Seq expression changes over time, we identified 100 sharply changing genes that are key for guiding 1700 genes into the AAT attractor basin. Collectively, these genes were named as attractor genes constituting of 6 dynamic clusters. Apart from the expected anaerobic (glycolysis), aerobic (TCA cycle) and fermentation (succinate pathways) processes, sulphur metabolism, ribosome assembly and amino acid transport mechanisms together with 332 uncharacterised genes are also key for AAT. Overall, our work highlights the importance of multi-dimensional statistical analyses for revealing novel processes shaping AAT.


Subject(s)
Aerobiosis/genetics , Escherichia coli/metabolism , Transcriptome , Aerobiosis/physiology , Anaerobiosis/genetics , Anaerobiosis/physiology , Escherichia coli/genetics , Escherichia coli/physiology , Gene Expression Profiling , Gene Expression Regulation, Bacterial/genetics , Gene Expression Regulation, Bacterial/physiology , Genes, Bacterial/physiology , Transcriptome/genetics
11.
Sci Rep ; 10(1): 2215, 2020 02 10.
Article in English | MEDLINE | ID: mdl-32042029

ABSTRACT

Biological ammonium removal via heterotrophic nitrification/aerobic denitrification (HN/AD) presents several advantages in relation to conventional removal processes, but little is known about the microorganisms and metabolic pathways involved in this process. In this study, Pseudomonas stutzeri UFV5 was isolated from an activated sludge sample from oil wastewater treatment station and its ammonium removal via HN/AD was investigated by physicochemical and molecular approaches to better understand this process and optimize the biological ammonium removal in wastewater treatment plants. Results showed that P. stutzeri UFV5 removed all the ammonium in 48-72 hours using pyruvate, acetate, citrate or sodium succinate as carbon sources, C/N ratios 6, 8, 10 and 12, 3-6% salinities, pH 7-9 and temperatures of 20-40 °C. Comparative genomics and PCR revealed that genes encoding the enzymes involved in anaerobic denitrification process are present in P. stutzeri genome, but no gene that encodes enzymes involved in autotrophic nitrification was found. Furthermore, transcriptomics showed that none of the known enzymes of autotrophic nitrification and anaerobic denitrification had their expression differentiated and an upregulation of the biosynthesis machinery and protein translation was observed, besides several genes with unknown function, indicating a non-conventional mechanism involved in HN/AD process.


Subject(s)
Ammonium Compounds/metabolism , Gene Expression Regulation, Bacterial/physiology , Pseudomonas stutzeri/metabolism , Transcriptome/physiology , Wastewater/chemistry , Aerobiosis/physiology , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Biodegradation, Environmental , Denitrification/physiology , Heterotrophic Processes/physiology , Nitrification/physiology , Pseudomonas stutzeri/chemistry , Pseudomonas stutzeri/genetics , Sewage/microbiology
12.
J Exp Biol ; 222(Pt 22)2019 11 21.
Article in English | MEDLINE | ID: mdl-31628206

ABSTRACT

Animals that inhabit environments that fluctuate in oxygen must not only contend with disruptions to aerobic metabolism, but also the potential effects of reactive oxygen species (ROS). The goal of this study was to compare aspects of ROS metabolism in response to O2 variability (6 h hypoxia or hyperoxia, with subsequent normoxic recovery) in two species of intertidal sculpin fishes (Cottidae, Actinopterygii) that can experience O2 fluctuations in their natural environment and differ in whole-animal hypoxia tolerance. To assess ROS metabolism, we measured the ratio of glutathione to glutathione disulfide as an indicator of tissue redox environment, MitoP/MitoB ratio to assess in vivo mitochondrial ROS generation, thiobarbituric acid reactive substances (TBARS) for lipid peroxidation, and total oxidative scavenging capacity (TOSC) in the liver, brain and gill. In the brain, the more hypoxia-tolerant Oligocottusmaculosus showed large increases in TBARS levels following hypoxia and hyperoxia exposure that were generally not associated with large changes in mitochondrial H2O2 In contrast, the less-tolerant Scorpaenichthysmarmoratus showed no significant changes in TBARS or mitochondrial H2O2 in the brain. More moderate increases were observed in the liver and gill of O. maculosus exposed to hypoxia and hyperoxia with normoxic recovery, whereas S. marmoratus had a greater response to O2 variability in these tissues compared with the brain. Our results show a species- and tissue-specific relationship between hypoxia tolerance and ROS metabolism.


Subject(s)
Oxygen/metabolism , Perciformes/metabolism , Reactive Oxygen Species/metabolism , Aerobiosis/physiology , Animals , Brain/metabolism , Gills/metabolism , Hypoxia/metabolism , Lipid Peroxidation , Liver/metabolism , Oxidation-Reduction , Species Specificity
13.
Cells ; 8(10)2019 09 24.
Article in English | MEDLINE | ID: mdl-31554233

ABSTRACT

The vacuolar H+-adenosine triphosphatase (ATPase) subunit V0C (ATP6V0C), a proton-conducting, pore-forming subunit of vacuolar ATPase, maintains pH homeostasis and induces organelle acidification. The intracellular and extracellular pH of cancer cells affects their growth; however, the role of ATP6V0C in highly invasive esophageal cancer cells (ECCs) remains unclear. In this study, we examined the role of ATP6V0C in glucose metabolism in ECCs. The ATP6V0C depletion attenuated ECC proliferation, invasion, and suppressed glucose metabolism, as indicated by reduced glucose uptake and decreased lactate and adenosine triphosphate (ATP) production in cells. Consistent with this, expression of glycolytic enzyme and the extracellular acidification rate (ECAR) were also decreased by ATP6V0C knockdown. Mechanistically, ATP6V0C interacted with pyruvate kinase isoform M2 (PKM2), a key regulator of glycolysis in ECCs. The ATP6V0C depletion reduced PKM2 phosphorylation at tyrosine residue 105 (Tyr105), leading to inhibition of nuclear translocation of PKM2. In addition, ATP6V0C was recruited at hypoxia response element (HRE) sites in the lactate dehydrogenase A (LDHA) gene for glycolysis. Thus, our data suggest that ATP6V0C enhances aerobic glycolysis and motility in ECCs.


Subject(s)
Carrier Proteins/metabolism , Esophageal Neoplasms/metabolism , Esophageal Neoplasms/pathology , Glycolysis/genetics , Membrane Proteins/metabolism , Thyroid Hormones/metabolism , Vacuolar Proton-Translocating ATPases/physiology , Aerobiosis/physiology , Cell Movement/genetics , Cell Proliferation/genetics , Cells, Cultured , Esophageal Neoplasms/genetics , HeLa Cells , Humans , Neoplasm Invasiveness , Phosphorylation , Protein Subunits/physiology , Protein Transport/genetics , Signal Transduction/genetics , Thyroid Hormone-Binding Proteins
14.
Sci Rep ; 9(1): 11165, 2019 08 01.
Article in English | MEDLINE | ID: mdl-31371766

ABSTRACT

Anemia defined as reduced hemoglobin levels of red blood cells may carry less oxygen to skeletal muscle and impair physical performance. Previous studies have shown that exercise intolerance was related to moderate or severe anemia, however, the relationship to mild anemia was unknown. We investigated the cross-sectional association of mild anemia defined as a hemoglobin level of 10.0-13.9 g/dL with physical fitness in 3,666 military young males in Taiwan in 2014. Aerobic fitness was evaluated by 3000-meter run test, and anaerobic fitness was evaluated by 2-minute sit-ups and 2-minute push-ups, respectively. Multiple logistic regressions for the best 10% and the worst 10% performers were used to determine the relationship. There were 343 mild anemic males in whom 47.8% were microcytic anemia and 3,323 non-anemic males for the analysis. The multiple logistic regression shows that as compared with non-anemic males, mild anemic males were more likely to be the worst 10% performers in the 3000-meter run test (odds ratios (OR) and 95% confidence intervals: 1.47, 1.01-2.14) after adjusting for age, service specialty, body mass index, waist size, mean blood pressure, unhealthy behaviors, lipid profiles, and exercise frequency. On the contrary, mild anemic males had higher possibility to be the best 10% performers in the 2-minute push-ups test (OR: 1.48, 1.08-2.04). However, there was no association between mild anemia and 2-minute sit-ups. Our findings suggest that unspecified mild anemia might be associated with lower cardiorespiratory fitness but not with anaerobic fitness in physically active military males.


Subject(s)
Anemia/physiopathology , Physical Fitness/physiology , Aerobiosis/physiology , Anaerobiosis/physiology , Anemia/metabolism , Cardiorespiratory Fitness , Cross-Sectional Studies , Exercise/physiology , Humans , Male , Military Personnel , Taiwan , Young Adult
15.
J Theor Biol ; 476: 62-73, 2019 09 07.
Article in English | MEDLINE | ID: mdl-31170405

ABSTRACT

The lifeless earth was formed around 4.5 billion years ago and the first anaerobic unicellular "organisms" may have appeared half a billion years later. Despite subsequent prokaryotes (bacteria and archaea) evolving quite complex biochemistry and some eukaryote characteristics, the transition from unicellular prokaryotes to multicellular, aerobic eukaryotes took a further 2.5 billion years to begin. The key factor or factors that eventually caused this long-delayed transition is a question that has been a focus of considerable research and a topic of discussion over many years. On the basis of the extensive literature available and consideration of some of the characteristics that distinguish multicellular eukaryotes from prokaryotes, it is proposed that, as well as the development of oxygenic photosynthesis producing high levels of environmental oxygen and the formation of vital organelles such as aerobic adenosine triphosphate-generating mitochondria, the concurrent evolution of the L-ascorbic acid redox system should be considered as a key factor that led to the evolution of multicellular eukaryotes and it remains vitally involved in the maintenance of multicellularity and many other eukaryote characteristics.


Subject(s)
Ascorbic Acid/metabolism , Eukaryotic Cells/metabolism , Evolution, Molecular , Photosynthesis/physiology , Plants/metabolism , Aerobiosis/physiology , Eukaryotic Cells/cytology
16.
Curr Issues Mol Biol ; 33: 85-100, 2019.
Article in English | MEDLINE | ID: mdl-31166186

ABSTRACT

This review is focused on recent studies of carbon metabolism in aerobic methanotrophs that specifically addressed the properties, distribution and phylogeny of some of the key enzymes involved in assimilation of carbon from methane. These include enzymes involved in sugar sythesis and cleavage, conversion of intermediates of the tricarboxylic acid cycle, as well as in osmoadaptation in halotolerant methanotrophs.


Subject(s)
Aerobiosis/physiology , Methane/metabolism , Soil Microbiology , Adaptation, Biological/genetics , Biodiversity , Carbon/metabolism , Citric Acid Cycle/genetics , Osmotic Pressure/physiology , Phylogeny
17.
Int J Food Microbiol ; 298: 51-62, 2019 Jun 02.
Article in English | MEDLINE | ID: mdl-30925356

ABSTRACT

Lactic acid bacteria (LAB) are used as starter, adjunct and/or probiotic cultures in fermented foods. Several species are recognized as oxygen-tolerant anaerobes, and aerobic and respiratory cultivations may provide them with physiological and technological benefits. In this light, mechanisms involved in the adaptation to aerobic and respiratory (supplementation with heme and menaquinone) growth conditions of the O2-tolerant strain Lactobacillus casei N87 were investigated by proteomics. In fact, in this bacterial strain, respiration induced an increase in biomass yield and robustness to oxidative, long-term starvation and freeze-drying stresses, while high concentrations of dissolved O2 (dO2 60%) negatively affected its growth and cell survival. Proteomic results well paralleled with physiological and metabolic features and clearly showed that aerobic life-style led to a higher abundance of several proteins involved in carbohydrate metabolism and stress response mechanisms and, concurrently, impaired the biosynthesis of proteins involved in nucleic acid formation and translation processes, thus providing evidence at molecular level of the significant damage to L.casei N87 fitness. On the contrary, the activation of respiratory pathways due to heme and menaquinone supplementation, led to a decreased amount of chaperones and other stress related proteins. These findings confirmed that respiration reduced oxidative stress condition, allowing to positively modulate the central carbohydrate and energy metabolism and improve growth and stress tolerance features. Results of this study could be potentially functional to develop competitive adjunct and probiotic cultures effectively focused on the improvement of quality of fermented foods and the promotion of human health.


Subject(s)
Aerobiosis/physiology , Lacticaseibacillus casei/physiology , Proteome/physiology , Heme/pharmacology , Lacticaseibacillus casei/drug effects , Lacticaseibacillus casei/genetics , Oxidation-Reduction , Oxidative Stress/physiology , Oxygen/pharmacology , Probiotics , Proteome/drug effects , Proteomics
18.
Sci Rep ; 9(1): 1341, 2019 02 04.
Article in English | MEDLINE | ID: mdl-30718700

ABSTRACT

In the present study rice straw (R, control) was mixed with Cowdung (C), Azolla (A) and cellulolytic fungus Aspergillus terreus (F) in different combinations viz. RC, RA, RF, RCF, RCA, RFA and RCFA and subjected to aerobic composting (Acom) and vermicomposting (Vcom - with Eisenia fetida). It was found that addition of azolla and cattledung to two parts straw(RCA-666: 314:20 g) caused fastest degradation (105 days), gave maximum population buildup of E. fetida (cocoons, hatchlings and worm biomass), highest decline in pH, EC, TOC and C/N ratio and maximum increase over control in N(17.72%), P(44.64%), K(43.17%), H (7.93%), S (14.85%), Ca(10.16%), Na(145.97%), Fe(68.56%), Zn(12.10%) and Cu(32.24%). Rice straw (R) took longest time for degradation i.e. 120 and 140 days and had lowest content of nutrients in Vcom as well as Acom group. RCFA was also converted into Vcom at the same time but other parameters were less than RCA except for highest content of B (19.87%), Mg(21.27%) and Mn (5.58%). Bioconversion of three parts straw (RCA-735:245:20 g) was also faster (110 days) with vermicomposting than all the mixtures of Acom group (130-140 days) but nutrient content was slightly less than RCA with 2 parts straw. The results show that azolla reduces dependence on cattledung for recycling the carbon rich rice straw and enhances its agronomic value.


Subject(s)
Aspergillus/isolation & purification , Biomass , Oryza/microbiology , Aerobiosis/physiology , Aspergillus/pathogenicity , Carbon/metabolism , Composting , Ferns/microbiology , Oryza/metabolism , Recycling
19.
Appl Physiol Nutr Metab ; 44(7): 791-795, 2019 Jul.
Article in English | MEDLINE | ID: mdl-30608872

ABSTRACT

The purpose of this study was to investigate the effect of 6 weeks of oral Echinacea purpurea supplementation on serum erythropoietin (EPO) and erythropoietic status. Twenty-four males (mean ± SE; age = 25.2 ± 1.4 years, height = 178.1 ± 1.4 cm, body mass = 78.1 ± 1.6 kg, body fat = 12.7 ± 0.9%, maximal oxygen uptake = 52.9 ± 0.9 mL·kg-1·min-1) were randomly grouped using a matched-pair, double-blind design and self-administered 8000 mg·day-1 of either E. purpurea (n = 12) or placebo (n = 12) for 42 consecutive days. Blood samples were collected prior to supplementation (day 0) and every 2 weeks during the supplementation period (days 14, 28, and 42) and were analyzed for EPO, red blood cell count, hemoglobin concentration, hematocrit, mean corpuscular volume, and mean corpuscular hemoglobin concentration. Separate 2 × 4 (group × time) factorial ANOVA with repeated measures on time were used to determine statistical differences with significance set at p ≤ 0.05. There were no significant interaction, group, or time effects observed for EPO or erythropoietic status markers for any of the measurement points (p ≤ 0.05). The present study indicated that 6 weeks of oral E. purpurea supplementation in recreationally active males with above average aerobic fitness did not enhance EPO or erythropoietic status. These findings are in contrast with previous reports of E. purpurea supplementation in untrained participants with average fitness levels, but consistent with observations in trained endurance athletes.


Subject(s)
Aerobiosis/physiology , Dietary Supplements , Echinacea/chemistry , Erythropoiesis/drug effects , Erythropoietin/blood , Physical Fitness/physiology , Adult , Anaerobic Threshold/drug effects , Double-Blind Method , Erythrocyte Count , Erythrocyte Indices , Hematocrit , Hemoglobins/analysis , Humans , Male , Young Adult
20.
Am J Physiol Regul Integr Comp Physiol ; 316(3): R255-R264, 2019 03 01.
Article in English | MEDLINE | ID: mdl-30601704

ABSTRACT

Purely diffusive O2 transport typically is insufficient to sustain aerobic metabolism in most multicellular organisms. In animals that are small enough, however, a high surface-to-volume ratio may allow passive diffusion alone to supply sufficient O2 transfer. The purpose of this study was to explore the impacts of internal convection on respiratory gas transfer in a small complex organism, the larval zebrafish ( Danio rerio). Specifically, we tested the hypothesis that internal convection is required for the normal transfer of the respiratory gases O2 and CO2 and maintenance of resting aerobic metabolic rate in larvae at 4 days postfertilization (dpf). Morpholino knockdown of the vascular endothelial growth factor (VEGF) or cardiac troponin T (TNNT2) proteins allowed an examination of gas transfer in two independent models lacking internal convection. With the use of a scanning micro-optrode technique to measure regional epithelial O2 fluxes ( Jo2), it was demonstrated that larvae lacking convection exhibited reduced Jo2 in regions spanning the head to the trunk. Moreover, the acute loss of internal convection caused by heart stoppage resulted in reduced rates of cutaneous Jo2, an effect that was reversed upon the restoration of internal convection. With the use of whole body respirometry, it was shown that loss of internal convection was associated with reduced resting rates of O2 consumption and CO2 excretion in larvae at 4 dpf. The results of these experiments clearly demonstrate that internal convection is required to maintain resting rates of respiratory gas transfer in larval zebrafish.


Subject(s)
Aerobiosis/physiology , Convection , Pulmonary Gas Exchange/physiology , Zebrafish/metabolism , Animals , Carbon Dioxide/metabolism , Eye/growth & development , Female , Gene Knockdown Techniques , Larva , Male , Oxygen Consumption/physiology , Respiratory Physiological Phenomena , Troponin T/metabolism , Vascular Endothelial Growth Factor A/metabolism , Zebrafish Proteins/metabolism
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