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1.
Nature ; 617(7962): 711-716, 2023 05.
Article in English | MEDLINE | ID: mdl-37225882

ABSTRACT

Fluorescence microscopy, with its molecular specificity, is one of the major characterization methods used in the life sciences to understand complex biological systems. Super-resolution approaches1-6 can achieve resolution in cells in the range of 15 to 20 nm, but interactions between individual biomolecules occur at length scales below 10 nm and characterization of intramolecular structure requires Ångström resolution. State-of-the-art super-resolution implementations7-14 have demonstrated spatial resolutions down to 5 nm and localization precisions of 1 nm under certain in vitro conditions. However, such resolutions do not directly translate to experiments in cells, and Ångström resolution has not been demonstrated to date. Here we introdue a DNA-barcoding method, resolution enhancement by sequential imaging (RESI), that improves the resolution of fluorescence microscopy down to the Ångström scale using off-the-shelf fluorescence microscopy hardware and reagents. By sequentially imaging sparse target subsets at moderate spatial resolutions of >15 nm, we demonstrate that single-protein resolution can be achieved for biomolecules in whole intact cells. Furthermore, we experimentally resolve the DNA backbone distance of single bases in DNA origami with Ångström resolution. We use our method in a proof-of-principle demonstration to map the molecular arrangement of the immunotherapy target CD20 in situ in untreated and drug-treated cells, which opens possibilities for assessing the molecular mechanisms of targeted immunotherapy. These observations demonstrate that, by enabling intramolecular imaging under ambient conditions in whole intact cells, RESI closes the gap between super-resolution microscopy and structural biology studies and thus delivers information key to understanding complex biological systems.


Subject(s)
Antigens, CD20 , Cells , DNA , Microscopy, Fluorescence , Biological Science Disciplines/instrumentation , Biological Science Disciplines/methods , Biological Science Disciplines/standards , Immunotherapy , Microscopy, Fluorescence/instrumentation , Microscopy, Fluorescence/methods , Microscopy, Fluorescence/standards , DNA Barcoding, Taxonomic , DNA/analysis , DNA/chemistry , Antigens, CD20/analysis , Antigens, CD20/chemistry , Cells/drug effects , Cells/metabolism
2.
Am J Clin Pathol ; 157(5): 685-690, 2022 05 04.
Article in English | MEDLINE | ID: mdl-34698343

ABSTRACT

OBJECTIVES: To assess the efficacy of a method to circumvent CD20-positive antigen masking by rituximab for flow cytometry analysis of B-cell malignancies in hematology patients. METHODS: Mononuclear cells (MNCs) from 10 healthy individuals and 5 untreated patients with B-cell malignancies were sensitized with rituximab. Patients' diagnoses included chronic lymphocytic leukemia, hairy cell leukemia, and follicular lymphoma. MNCs were isolated by gradient density centrifugation. An EDTA/glycine acid (EGA) elution method was used to dissociate CD20-rituximab complexes; afterwards, CD20-positive immunoreactivity was assessed by flow cytometry. A saturation curve was built based on serial dilutions of rituximab. Median fluorescent intensities of CD20-positive signals were obtained before sensitization with rituximab and after its elution with EGA. RESULTS: CD20-positive signals were not detectable by flow cytometry after rituximab sensitization of B cells. CD20-sensitized vs CD20-unsensitized, CD20-sensitized vs CD20-eluted, and CD20-eluted vs CD20-negative control (NC) MNC populations exhibited statistical differences (P = .001), while CD20-sensitized vs CD20-NC populations did not (P = .499), confirming CD20 antigen masking by rituximab. CONCLUSIONS: Rituximab interfered with the flow cytometry protocol for CD20 determination on normal and neoplastic B cells. The EGA method efficiently eluted rituximab, allowing for accurate identification of CD20-positive B cells.


Subject(s)
Antineoplastic Agents , Leukemia, Lymphocytic, Chronic, B-Cell , Antibodies, Monoclonal, Murine-Derived/therapeutic use , Antigens, CD20/analysis , Antigens, CD20/therapeutic use , Antineoplastic Agents/therapeutic use , B-Lymphocytes/pathology , Edetic Acid/pharmacology , Glycine/therapeutic use , Humans , Immunophenotyping , Leukemia, Lymphocytic, Chronic, B-Cell/pathology , Rituximab/therapeutic use
4.
Acta Cytol ; 65(6): 510-521, 2021.
Article in English | MEDLINE | ID: mdl-34535585

ABSTRACT

INTRODUCTION/OBJECTIVE: Liquid-based cytology (LBC) is advantageous as multiple stained specimens can be prepared and used for additional assays such as immunocytochemical and molecular-pathological investigations. Two types of preservative-fixative solutions (fixatives) are used for nongynecologic specimens used in the BD SurePath-LBC (SP-LBC) method, and their components vary. However, few studies have evaluated the differences in antigen-retaining ability between these fixatives. Therefore, we investigated and compared the antigen-retaining ability of the fixatives in immunocytochemical staining (ICC) under long-term storage conditions. MATERIALS AND METHODS: Sediments of cultured RAJI cells (derived from Burkitt's lymphoma) were added to each fixative (red and blue) and stored at room temperature for a specified period (1 h; 1 week; and 1, 3, and 6 months). The specimens were then prepared using the SP-LBC method and subjected to ICC. Positivity rate was calculated using the specimens fixed at room temperature for 1 h as a control. Antibodies against Ki67 expressed in the nucleus and against CD20 and leukocyte common antigen (LCA) expressed on the cell membrane were used. RESULTS: For CD20 and LCA, the positivity rate increased with time in the red fixative compared with that in the control. In the blue fixative, the positivity rate was highest at 1 h and was maintained at a high level throughout the storage period. In contrast, the Ki67 positivity rate was highest at 1 h in both red and blue fixatives and markedly decreased with time. Therefore, although refrigerated (8°C) storage was used, no improvement was noted. CONCLUSIONS: Long-term storage is possible for cell membrane antigens at room temperature; however, it is unsuitable for intranuclear antigens. Therefore, we conclude that suitable fixative type and storage temperature differ based on antigen location. Further investigation is warranted.


Subject(s)
Antigens, CD20/analysis , Antigens/analysis , Burkitt Lymphoma/immunology , Fixatives/chemistry , Immunohistochemistry , Ki-67 Antigen/analysis , Leukocyte Common Antigens/analysis , Tissue Fixation , Antibody Specificity , Burkitt Lymphoma/pathology , Cell Line, Tumor , Humans , Liquid Biopsy , Predictive Value of Tests , Protein Stability , Time Factors
5.
Cancer Med ; 10(13): 4387-4396, 2021 07.
Article in English | MEDLINE | ID: mdl-34061467

ABSTRACT

Moreau score has been used to differentiate chronic lymphocytic leukemia (CLL) from other mature B-cell neoplasms. However, it showed limitations in Asian patients. Therefore, we conducted a new score system replacing CD5 and CD23 with CD43 and CD180 to evaluate its diagnostic value of CLL. 237 untreated samples diagnosed with mature B-cell neoplasms were collected and were randomly divided into an exploratory and a validation cohort by a 2:1 ratio. The expression of CD5, CD19, CD20, CD23, CD43, CD79b, CD180, CD200, FMC7, and surface immunoglobulin (SmIg) were analyzed among all the samples. A proposed score was developed based on the logistic regression model. The sensitivity and specificity of the proposed score were calculated by ROC curves. CD43/CD180, CD200, FMC7, and CD79b were included in our new CLL score, which showed a sensitivity of 91.8% and a specificity of 83.1%. These results were confirmed in a validation cohort with a sensitivity of 90.5% (p = 0.808) and a specificity of 79.5% (p = 0.639). In CD5 negative or CD23 negative CLL group, the new CLL score displayed improved sensitivity of 79.4% compared to Moreau score and CLLflow score (41.2% and 47.1%, respectively). In atypical CLL group, the new CLL score showed improved sensitivity of 84.2% compared to Moreau score and CLLflow score (61.4% and 64.9%, respectively). This proposed atypical CLL score helped to offer an accurate differentiation of CLL from non-CLL together with morphological and molecular methods, particularly in Chinese patients with atypical immunophenotype.


Subject(s)
Antigens, CD/analysis , Biomarkers, Tumor/analysis , Leukemia, Lymphocytic, Chronic, B-Cell/diagnosis , Leukosialin/analysis , Antigens, CD19/analysis , Antigens, CD20/analysis , CD5 Antigens/analysis , CD79 Antigens/analysis , Diagnosis, Differential , Flow Cytometry/methods , Glycoproteins/analysis , Humans , Immunophenotyping , Leukemia, Lymphocytic, Chronic, B-Cell/metabolism , Logistic Models , Lymphoma, B-Cell/diagnosis , Lymphoma, B-Cell/metabolism , ROC Curve , Receptors, Antigen, B-Cell/analysis , Receptors, IgE/analysis , Sensitivity and Specificity
6.
Virchows Arch ; 479(3): 575-583, 2021 Sep.
Article in English | MEDLINE | ID: mdl-33655392

ABSTRACT

Burkitt lymphoma (BL) is a B cell lymphoma composed of monomorphic medium-sized blastic cells with basophilic cytoplasm and a high proliferation index. BL has a characteristic immunophenotype of CD10 and BCL6 positive and BCL2 negative and harbours MYC gene rearrangements (MYCR) in >90% of the cases. Owing to its highly aggressive nature, intensified chemotherapy regimens are usually administered, requiring an exact diagnosis. Since the diagnosis usually warrants an integration of morphologic, immunophenotypic and genetic findings and because there is a morphologic overlap with the new WHO category of high-grade B cell lymphoma, not otherwise specified (HGBL, NOS) and some cases of diffuse large B cell lymphoma (DLBCL), we wanted to test the distinctiveness of the CD10+, BCL6+, BCL2- and MYCR positive immunopheno-genotype in a large cohort of >1000 DLBCL and HGBL. Only 9/982 DLBCL classified by an expert panel of haematopathologists (0.9%) displayed a single MYCR and were CD10+, BCL6+ and BCL2-. In a similar fashion, only one out of 32 HGBL, NOS (3%) displayed the "Burkitt-like" genetic/immunophenotypic constitution. The samples of non-BL showing the BL-typic immunopheno-genotype, interestingly, harboured higher copy number variations (CNV) by OncoScan analysis (mean 7.3 CNVs/sample; range: 2-13 vs. 2.4; range 0-6) and were also distinct from pleomorphic BL cases regarding their mutational spectrum by NGS analysis. This implies that the characteristic immunophenotype of BL, in concert with a single MYCR, is uncommon in these aggressive lymphomas, and that this constellation favours BL.


Subject(s)
Biomarkers, Tumor , Burkitt Lymphoma/genetics , Burkitt Lymphoma/immunology , DNA Copy Number Variations , Gene Dosage , Lymphoma, Large B-Cell, Diffuse/genetics , Lymphoma, Large B-Cell, Diffuse/immunology , Mutation , Antigens, CD20/analysis , Biomarkers, Tumor/analysis , Biomarkers, Tumor/genetics , Burkitt Lymphoma/pathology , DNA Mutational Analysis , Genetic Predisposition to Disease , High-Throughput Nucleotide Sequencing , Humans , Immunohistochemistry , Immunophenotyping , In Situ Hybridization, Fluorescence , Lymphoma, Large B-Cell, Diffuse/pathology , Neoplasm Grading , Neprilysin/analysis , Phenotype , Proto-Oncogene Proteins c-bcl-2/analysis , Proto-Oncogene Proteins c-bcl-2/genetics , Proto-Oncogene Proteins c-bcl-6/analysis , Proto-Oncogene Proteins c-bcl-6/genetics , Proto-Oncogene Proteins c-myc/genetics , Retrospective Studies
7.
Int J Surg Pathol ; 29(4): 400-403, 2021 Jun.
Article in English | MEDLINE | ID: mdl-33252276

ABSTRACT

In this article, we report the case of a 78-year-old woman who consulted our hospital for a right breast mass detected on mammography during her cancer screening. Biopsy specimens showed atypical lymphocytic infiltration with a follicle-like growth pattern, suggesting a follicular lymphoma (FL). Immunohistochemically, the atypical lymphoid cells were diffusely and strongly positive for CD20, BCL2, and BCL6, but negative for CD10. IGH-BCL2 translocation was confirmed by fluorescence in situ hybridization analysis, leading to the diagnosis of primary breast FL. The most important differential diagnosis of this case was marginal zone lymphoma (MZL), which usually shows a CD10-/BCL2+ immunophenotype and is one of the common histological types in primary breast lymphomas. FLs with an atypical immunophenotype exist in a certain percentage of patients. Therefore, FL is considered to be a heterogeneous entity. It is important to distinguish FL from MZL in primary breast lymphomas because FLs may have a worse prognosis than MZLs.


Subject(s)
Biomarkers, Tumor/analysis , Breast Neoplasms/diagnosis , Breast/pathology , Lymphoma, Follicular/diagnosis , Neprilysin/analysis , Aged , Antigens, CD20/analysis , Antigens, CD20/metabolism , Biopsy , Breast/diagnostic imaging , Breast Neoplasms/pathology , Breast Neoplasms/radiotherapy , Diagnosis, Differential , Female , Humans , Lymphoma, B-Cell, Marginal Zone/diagnosis , Lymphoma, B-Cell, Marginal Zone/pathology , Lymphoma, Follicular/pathology , Lymphoma, Follicular/radiotherapy , Neoplasm Grading , Proto-Oncogene Proteins c-bcl-2/analysis , Proto-Oncogene Proteins c-bcl-2/metabolism , Treatment Outcome , Ultrasonography, Mammary
8.
Am J Surg Pathol ; 45(3): 384-393, 2021 03 01.
Article in English | MEDLINE | ID: mdl-33136585

ABSTRACT

Follicular lymphoma (FL) is an indolent B-cell neoplasm of germinal center origin. Standard treatment regimens consist of anti-CD20 therapy with or without chemotherapy. While high response rates to initial therapy are common, patients ultimately relapse or have progressive disease. Clinical risk factors such as the Follicular Lymphoma International Prognostic Index (FLIPI) have been identified, but there is a need for prognostic and predictive biomarkers. We studied markers of lymphoma cells and tumor microenvironment by immunohistochemistry in tissue samples from patients enrolled in 1 of 4 phase 2 trials of anti-CD20-based biological therapy for previously untreated grades 1 to 2 or 3A FL. Results were correlated with progression-free survival (PFS) and PFS status at 24 months. The 4 trials included 238 patients (51.1% male, median age: 55 y) with stage III, IV, or bulky stage II disease. By FLIPI, 24.6% had low-risk, 56.8% had intermediate-risk, and 18.6% had high-risk disease. The outcome differed significantly for patients treated with lenalidomide and rituximab (CALGB 50803) compared with the other 3 trials (median: PFS not reached vs. 3.0 y, hazard ratio=3.47, 95% confidence interval: 2.11-5.72); therefore, data were stratified by clinical trial (CALGB 50803 vs. all others) and adjusted for FLIPI risk group. Among 154 patients with available tissue, interfollicular BCL6 positivity, interfollicular CD10 positivity, and elevated Ki67 proliferation index ≥30% within neoplastic follicles were each associated with inferior PFS and a high risk of the early event by PFS status at 24 months. We identify promising biomarkers for FL risk stratification that warrant further validation in phase 3 trials.


Subject(s)
Antigens, CD20/analysis , Antineoplastic Agents, Immunological/therapeutic use , Lymphoma, Follicular/drug therapy , Rituximab/therapeutic use , Adult , Aged , Aged, 80 and over , Antineoplastic Agents, Immunological/adverse effects , Biomarkers, Tumor/analysis , Clinical Trials as Topic , Disease Progression , Female , Humans , Immunohistochemistry , Ki-67 Antigen/analysis , Lymphoma, Follicular/immunology , Lymphoma, Follicular/pathology , Male , Middle Aged , Neoplasm Staging , Neprilysin/analysis , Prospective Studies , Proto-Oncogene Proteins c-bcl-6/analysis , Recurrence , Risk Assessment , Risk Factors , Rituximab/adverse effects , Time Factors , Treatment Outcome , Tumor Microenvironment , United States , Young Adult
9.
Virchows Arch ; 479(3): 617-621, 2021 Sep.
Article in English | MEDLINE | ID: mdl-32979109

ABSTRACT

In patients with suspected lymphoma, the tissue biopsy provides lymphoma confirmation, classification, and prognostic factors, including genetic changes. We developed a deep learning algorithm to detect MYC rearrangement in scanned histological slides of diffuse large B-cell lymphoma. The H&E-stained slides of 287 cases from 11 hospitals were used for training and evaluation. The overall sensitivity to detect MYC rearrangement was 0.93 and the specificity 0.52, showing that prediction of MYC translocation based on morphology alone was possible in 93% of MYC-rearranged cases. This would allow a simple and fast prescreening, saving approximately 34% of genetic tests with the current algorithm.


Subject(s)
Biomarkers, Tumor/genetics , Deep Learning , Image Interpretation, Computer-Assisted , Lymphoma, Large B-Cell, Diffuse/genetics , Microscopy , Proto-Oncogene Proteins c-myc/genetics , Translocation, Genetic , Antigens, CD20/analysis , Biomarkers, Tumor/analysis , Genetic Predisposition to Disease , Humans , Immunohistochemistry , In Situ Hybridization, Fluorescence , Lymphoma, Large B-Cell, Diffuse/chemistry , Lymphoma, Large B-Cell, Diffuse/pathology , Phenotype , Predictive Value of Tests , Proof of Concept Study , Reproducibility of Results , Staining and Labeling
10.
Breast Cancer Res ; 22(1): 134, 2020 12 02.
Article in English | MEDLINE | ID: mdl-33267869

ABSTRACT

BACKGROUND: Inflammatory breast cancer (IBC) is a rare but aggressive carcinoma characterized by severe erythema and edema of the breast, with many patients presenting in advanced metastatic disease. The "inflammatory" nature is not due to classic immune-mediated inflammation, but instead results from tumor-mediated blockage of dermal lymphatic ducts. Previous work has shown that expression of PD-L1 on tumor cells can suppress T cell activation in triple-negative (TN) non-IBC breast cancer. In the present work, we investigated immune parameters in peripheral blood of metastatic IBC patients to determine whether cellular components of the immune system are altered, thereby contributing to pathogenesis of the disease. These immune parameters were also compared to PD-1 and PD-L1 expression in IBC tumor biopsies. METHODS: Flow cytometry-based immune phenotyping was performed using fresh peripheral blood from 14 stage IV IBC patients and compared to 11 healthy age-similar control women. Immunohistochemistry for CD20, CD3, PD-1, and PD-L1 was performed on tumor biopsies of these metastatic IBC patients. RESULTS: IBC patients with Stage IV disease had lymphopenia with significant reductions in circulating T, B, and NK cells. Reductions were observed in all subsets of CD4+ T cells, whereas reductions in CD8+ T cells were more concentrated in memory subsets. Immature cytokine-producing CD56bright NK cells expressed higher levels of FcγRIIIa and cytolytic granule components, suggesting accelerated maturation to cytolytic CD56dim cells. Immunohistochemical analysis of tumor biopsies demonstrated moderate to high expression of PD-1 in 18.2% of patients and of PD-L1 in 36.4% of patients. Interestingly, a positive correlation was observed between co-expression levels of PD-L1 and PD-1 in tumor biopsies, and higher expression of PD-L1 in tumor biopsies correlated with higher expression of cytolytic granule components in blood CD4+ T cells and CD56dim NK cells, and higher numbers of CD8+ effector memory T cells in peripheral blood. PD-1 expression in tumor also correlated with increased infiltration of CD20+ B cells in the tumor. CONCLUSIONS: Our results suggest that while lymphocyte populations are severely compromised in stage IV IBC patients, an immune response toward the tumor had occurred in some patients, providing biological rationale to evaluate PD-1/PD-L1 immunotherapies for IBC.


Subject(s)
Biomarkers, Tumor/analysis , Carcinoma/immunology , Inflammatory Breast Neoplasms/immunology , T-Lymphocytes/immunology , Adult , Aged , Antigens, CD20/analysis , Antigens, CD20/metabolism , B7-H1 Antigen/analysis , B7-H1 Antigen/metabolism , Biomarkers, Tumor/metabolism , Biopsy , Breast/immunology , Breast/pathology , CD3 Complex/analysis , CD3 Complex/metabolism , Carcinoma/blood , Carcinoma/diagnosis , Carcinoma/secondary , Case-Control Studies , Female , Flow Cytometry , Humans , Immunity, Cellular , Immunohistochemistry , Immunophenotyping/methods , Inflammatory Breast Neoplasms/blood , Inflammatory Breast Neoplasms/diagnosis , Inflammatory Breast Neoplasms/pathology , Lymphocyte Activation , Lymphocytes, Tumor-Infiltrating/immunology , Lymphocytes, Tumor-Infiltrating/metabolism , Middle Aged , Neoplasm Staging , Programmed Cell Death 1 Receptor/analysis , Programmed Cell Death 1 Receptor/metabolism , Retrospective Studies , T-Lymphocytes/metabolism
11.
J Clin Exp Hematop ; 60(3): 78-86, 2020 Sep 25.
Article in English | MEDLINE | ID: mdl-32641598

ABSTRACT

Classic Hodgkin lymphoma (CHL) is a lymphoid neoplasia characterized by the presence of large tumor cells, referred to as Hodgkin and Reed-Sternberg (HRS) cells, originating from B-cells in an inflammatory background. As the clinical significance of B-cell markers has yet to be fully elucidated, this study aimed to clarify the clinicopathological significance of CD79a in 55 patients with CHL. They were immunohistochemically divided into two groups, comprising of 20 CD79a-positive and 35 CD79a-negative patients. There was no significant correlation between CD79a and CD20 expression (rs = 0.125, P = 0.362). CD79a-positive patients were significantly older at onset (P = 0.011). There was no significant correlation between CD79a-positivity and clinical stage (P = 0.203), mediastinal involvement (P = 0.399), extranodal involvement (P = 0.749), or laboratory findings, including serum levels of lactate dehydrogenase (P = 1) and soluble interleukin-2 receptor (P = 0.251). There were significant differences in overall survival (OS) (P = 0.005) and progression-free survival (PFS) (P = 0.007) between CD79a-positive and CD79a-negative patients (5-year OS: 64.6% and 90.5%; 5-year PFS: 44.0% and 76.6%, respectively). Five patients in whom the majority (> 80%) of HRS cells expressed CD79a consisted of 4 males and 1 female aged between 52 and 81 years; 4 of them were in a limited clinical stage. We concluded that CD79a-positive CHL may have unique clinicopathological features.


Subject(s)
CD79 Antigens/analysis , Hodgkin Disease/pathology , Adolescent , Adult , Aged , Aged, 80 and over , Antigens, CD20/analysis , Female , Humans , Male , Middle Aged , Reed-Sternberg Cells/pathology , Survival Analysis , Young Adult
12.
Bioconjug Chem ; 31(9): 2103-2115, 2020 09 16.
Article in English | MEDLINE | ID: mdl-32567844

ABSTRACT

The synthesis of a polylysine polymer functionalized with the previously reported astonishingly inert [In(cb-te2pa)]+ chelate was performed. A biotin end group allowed the conjugation to biotinylated beads by the intermediary of a fluorescein isothiocyanate/neutravidin receptor. High quality imaging mass cytometry trials, based on 115In detection were performed to highlight the behavior of the material. Anti-CD20 antibody was labeled by the so-obtained In(III)-modified polylysine using the biotin/neutravidin interaction. Ramos (CD20[+]) and HL-60 (CD20[-]) cell lines were costained with the In(III)-modified bioconjugate by finding the best staining conditions. Both immunofluorescence microscopy (IF-M) and mass cytometry analyses confirmed the specific binding of anti-CD20 onto Ramos cells. CyTOF histograms constructed on the 115In detection allowed us to define and to separate, with a good signal-to-noise ratio, two populations (Ramos and HL-60). The inertness of In(III)-MCP-NAv over a three-month storage period was proved by performing new functionality tests involving Jurkat cells (CD20[-]) and multiparametric trials involving the 115In channel. The results ensure a promising future use of the previously announced [In(cb-te2pa)]+ complex-based polymers for mass cytometry.


Subject(s)
Antigens, CD20/analysis , Fluorescein-5-isothiocyanate/analogs & derivatives , Heterocyclic Compounds/chemistry , Immunoconjugates/chemistry , Indium/chemistry , Polylysine/chemistry , Antibodies, Monoclonal/chemistry , Biotinylation , Cell Line , Chelating Agents/chemistry , Flow Cytometry/methods , Fluorescent Dyes/chemistry , HL-60 Cells , Humans , Jurkat Cells , Models, Molecular
13.
J Pathol Clin Res ; 6(4): 273-282, 2020 10.
Article in English | MEDLINE | ID: mdl-32592447

ABSTRACT

The biological complexity reflected in histology images requires advanced approaches for unbiased prognostication. Machine learning and particularly deep learning methods are increasingly applied in the field of digital pathology. In this study, we propose new ways to predict risk for cancer-specific death from digital images of immunohistochemically (IHC) stained tissue microarrays (TMAs). Specifically, we evaluated a cohort of 248 gastric cancer patients using convolutional neural networks (CNNs) in an end-to-end weakly supervised scheme independent of subjective pathologist input. To account for the time-to-event characteristic of the outcome data, we developed new survival models to guide the network training. In addition to the standard H&E staining, we investigated the prognostic value of a panel of immune cell markers (CD8, CD20, CD68) and a proliferation marker (Ki67). Our CNN-derived risk scores provided additional prognostic value when compared to the gold standard prognostic tool TNM stage. The CNN-derived risk scores were also shown to be superior when systematically compared to cell density measurements or a CNN score derived from binary 5-year survival classification, which ignores time-to-event. To better understand the underlying biological mechanisms, we qualitatively investigated risk heat maps for each marker which visualised the network output. We identified patterns of biological interest that were related to low risk of cancer-specific death such as the presence of B-cell predominated clusters and Ki67 positive sub-regions and showed that the corresponding risk scores had prognostic value in multivariate Cox regression analyses (Ki67&CD20 risks: hazard ratio (HR) = 1.47, 95% confidence interval (CI) = 1.15-1.89, p = 0.002; CD20&CD68 risks: HR = 1.33, 95% CI = 1.07-1.67, p = 0.009). Our study demonstrates the potential additional value that deep learning in combination with a panel of IHC markers can bring to the field of precision oncology.


Subject(s)
Biomarkers, Tumor/analysis , Deep Learning , Image Interpretation, Computer-Assisted , Immunohistochemistry , Stomach Neoplasms/chemistry , Tumor Microenvironment , Antigens, CD/analysis , Antigens, CD20/analysis , Antigens, Differentiation, Myelomonocytic/analysis , CD8 Antigens/analysis , Cell Proliferation , Humans , Ki-67 Antigen/analysis , Neoplasm Staging , Predictive Value of Tests , Risk Assessment , Risk Factors , Stomach Neoplasms/mortality , Stomach Neoplasms/pathology , Time Factors , Tissue Array Analysis
14.
Anal Chem ; 92(8): 5741-5749, 2020 04 21.
Article in English | MEDLINE | ID: mdl-32239915

ABSTRACT

Mass cytometry (MC) is a bioanalytical technique that uses metal-tagged antibodies (Abs) for high-dimensional single-cell immunoassays. Currently, this technology can measure over 40 parameters simultaneously on individual cells using metal-chelating polymer (MCP) based reagents. However, MC can in principle detect up to 135 parameters with the development of new elemental mass tags. Here we report the development of a tantalum oxide nanoparticle (NP)-based mass tag for MC immunoassays. Uniform-sized amine-functionalized tantalum oxide NPs (d ∼ 5.7 nm) were synthesized via a one-pot two-step reverse microemulsion method. These amine-functionalized NPs were further modified with azide groups by reacting with azide-PEG2k succinimidyl carboxymethyl ester (NHS-PEG2k-N3) cross-linkers. The Ab-NP conjugates were prepared by reacting azide-functionalized NPs with dibenzocyclooctyne (DBCO)-functionalized primary or secondary Abs (DBCO-Ab) followed by fast protein size exclusion liquid chromatography (FPLC) purification. Three Ab-NP conjugates (TaO2-PEG2k-goat antimouse, TaO2-PEG2k-CD25, TaO2-PEG2k-CD196) were fabricated and tested in MC immunoassays. For the TaO2-PEG2k-goat antimouse conjugate, we showed that it can effectively detect abundant CD20 biomarkers on Ramos cells. For TaO2-PEG2k-CD25 and TaO2-PEG2k-CD196 conjugates, we demonstrated that these Ab-NP conjugates could be integrated into the commercial Ab staining panels for high-dimensional single-cell immune profiling of human peripheral blood mononuclear cells.


Subject(s)
Antibodies/chemistry , Antigens, CD20/analysis , Chelating Agents/chemistry , Flow Cytometry , Immunoassay , Nanoparticles/chemistry , Oxides/chemistry , Tantalum/chemistry , Antibodies/immunology , Antigen-Antibody Reactions , Antigens, CD20/immunology , Biomarkers/analysis , Chelating Agents/chemical synthesis , Humans , Leukocytes, Mononuclear/chemistry , Oxides/chemical synthesis
15.
J Stroke Cerebrovasc Dis ; 29(6): 104798, 2020 Jun.
Article in English | MEDLINE | ID: mdl-32249205

ABSTRACT

This is an extremely rare reported case of intravascular large B-cell lymphoma (IVLBCL) presenting with acute hemorrhages and numerous microbleeds. An 80-year-old man presented with consciousness disturbances after convulsion. Computed tomography revealed multiple hemorrhages, and susceptibility-weighted imaging (SWI) demonstrated numerous microbleeds. Brain biopsy showed CD20-positive cells in small vessels; accordingly, IVLBCL was diagnosed. IVLBCL should be considered as a differential diagnosis in multiple cerebral hemorrhages and microbleeds.


Subject(s)
Cerebral Hemorrhage/etiology , Hematoma/etiology , Lymphoma, B-Cell/complications , Vascular Neoplasms/complications , Aged, 80 and over , Antigens, CD20/analysis , Antineoplastic Combined Chemotherapy Protocols/administration & dosage , Biomarkers, Tumor/analysis , Biopsy , Cerebral Hemorrhage/diagnostic imaging , Cerebral Hemorrhage/pathology , Cyclophosphamide/administration & dosage , Diffusion Magnetic Resonance Imaging , Doxorubicin/administration & dosage , Hematoma/diagnostic imaging , Hematoma/pathology , Humans , Immunohistochemistry , Lymphoma, B-Cell/diagnostic imaging , Lymphoma, B-Cell/drug therapy , Lymphoma, B-Cell/pathology , Male , Prednisone/administration & dosage , Rituximab/administration & dosage , Tomography, X-Ray Computed , Treatment Outcome , Vascular Neoplasms/diagnostic imaging , Vascular Neoplasms/drug therapy , Vascular Neoplasms/pathology , Vincristine/administration & dosage
16.
Acta Neuropathol Commun ; 7(1): 203, 2019 11 29.
Article in English | MEDLINE | ID: mdl-31815646

ABSTRACT

Recent work has highlighted the tumor microenvironment as a central player in cancer. In particular, interactions between tumor and immune cells may help drive the development of brain tumors such as glioblastoma multiforme (GBM). Despite significant research into the molecular classification of glioblastoma, few studies have characterized in a comprehensive manner the immune infiltrate in situ and within different GBM subtypes.In this study, we use an unbiased, automated immunohistochemistry-based approach to determine the immune phenotype of the four GBM subtypes (classical, mesenchymal, neural and proneural) in a cohort of 98 patients. Tissue Micro Arrays (TMA) were stained for CD20 (B lymphocytes), CD5, CD3, CD4, CD8 (T lymphocytes), CD68 (microglia), and CD163 (bone marrow derived macrophages) antibodies. Using automated image analysis, the percentage of each immune population was calculated with respect to the total tumor cells. Mesenchymal GBMs displayed the highest percentage of microglia, macrophage, and lymphocyte infiltration. CD68+ and CD163+ cells were the most abundant cell populations in all four GBM subtypes, and a higher percentage of CD163+ cells was associated with a worse prognosis. We also compared our results to the relative composition of immune cell type infiltration (using RNA-seq data) across TCGA GBM tumors and validated our results obtained with immunohistochemistry with an external cohort and a different method. The results of this study offer a comprehensive analysis of the distribution and the infiltration of the immune components across the four commonly described GBM subgroups, setting the basis for a more detailed patient classification and new insights that may be used to better apply or design immunotherapies for GBM.


Subject(s)
Brain Neoplasms/immunology , Glioblastoma/immunology , Immunity, Cellular/immunology , Tumor Microenvironment/immunology , Antigens, CD20/analysis , Antigens, CD20/immunology , Brain Neoplasms/pathology , Glioblastoma/pathology , Humans
17.
Cancer Immunol Immunother ; 68(10): 1573-1583, 2019 Oct.
Article in English | MEDLINE | ID: mdl-31511925

ABSTRACT

Desmoid tumors (DTs) are local aggressive neoplasms, whose therapeutic approach has remained so far unsolved and in many instances controversial. Nowadays, immunotherapy appears to play a leading role in the treatment of various tumor types. Characterization of the tumor immune microenvironment (TME) and immune checkpoints can possibly help identify new immunotherapeutic targets for DTs. We performed immunohistochemistry (IHC) on 33 formalin-fixed paraffin-embedded (FFPE) tissue sections from DT samples to characterize the TME and the immune checkpoint expression profile. We stained for CD3, CD4, CD8, CD20, FoxP3, CD45RO, CD56, CD68, NKp46, granzyme B, CD27, CD70, PD1 and PD-L1. We investigated the expression of the markers in the tumoral stroma, as well as at the periphery of the tumor. We found that most of the tumors showed organization of lymphocytes into lymphoid aggregates at the periphery of the tumor, strongly resembling tertiary lymphoid organs (TLOs). The tumor expressed a significant number of memory T cells, both at the periphery and in the tumoral stroma. In the lymphoid aggregates, we also recognized a significant proportion of regulatory T cells. The immune checkpoint ligand PD-L1 was negative on the tumor cells in almost all samples. On the other hand, PD1 was partially expressed in lymphocytes at the periphery of the tumor. To conclude, we are the first to show that DTs display a strong immune infiltration at the tumor margins, with formation of lymphoid aggregates. Moreover, we demonstrated that there is no PD-L1-driven immune suppression present in the tumor cells.


Subject(s)
B7-H1 Antigen/physiology , Fibromatosis, Aggressive/immunology , Immune Tolerance , Adolescent , Adult , Aged , Antigens, CD20/analysis , CD27 Ligand/analysis , Female , Fibromatosis, Aggressive/pathology , Humans , Leukocyte Common Antigens/analysis , Male , Middle Aged , Tumor Microenvironment , Young Adult
18.
Rev. cuba. hematol. inmunol. hemoter ; 35(3): e1014, jul.-set. 2019. graf
Article in Spanish | LILACS, CUMED | ID: biblio-1093280

ABSTRACT

Introducción: El rituximab, anticuerpo quimérico que reconoce la molécula CD20 humana, se ha utilizado en el tratamiento de diversos trastornos linfoproliferativos de células B. Para la selección de los potenciales beneficiarios del tratamiento con rituximab se han desarrollado técnicas que, mediante el uso de anticuerpos monoclonales, detectan la presencia del CD20 en los linfocitos de estos pacientes. Objetivo: Obtener y caracterizar un anticuerpo recombinante IgG1 de ratón específico para la molécula CD20 humana, que contenga las regiones variables del anticuerpo rituximab. Métodos: Para la expresión estable del anticuerpo recombinante se empleó la transducción lentiviral de células de embrión de riñón humano (HEK293). La caracterización inmunoquímica del anticuerpo se realizó por la técnica de Western Blot y su capacidad de reconocimiento de la molécula CD20 humana se evaluó por citometría de flujo e inmunohistoquímica. Resultados: Se obtuvo el anticuerpo 1F5 que reconoce, por citometría de flujo, la molécula CD20 en líneas celulares humanas de origen linfoide, así como en células de sangre periférica de humanos sanos y pacientes con trstornos linfoproliferativos de células B. Sin embargo, la técnica de inmunohistoquímica solo permitió detectar con este anticuerpo la molécula CD20 en tejidos frescos, no así en los embebidos en parafina. Conclusiones: Este trabajo sugiere las potencialidades del uso del anticuerpo 1F5 para las mediciones de la expresión de CD20 por citometría de flujo en pacientes con leucemias B o linfomas B avanzados en fase de leucemización. Esto complementaría los estudios para la selección apropiada de pacientes para el tratamiento con el rituximab(AU)


Introduction: Rituximab, chimeric antibody specific for human CD20 molecule, has been widely used in the treatment of several B-cell linfoproliferative disorders. For the selection of patients with the greatest potential to benefit from the therapy with rituximab, a number of techniques using monoclonal antibodies have been developed to detect the CD20 molecule. Objective: To obtain and to characterize a mouse IgG1 recombinant antibody, specific for human CD20, that contains the variable regions of rituximab. Methods: The lentiviral transduction of human embryonic kidney cells (HEK293) was used for the stable expression of the recombinant antibody. The immunochemical characterization of the antibody was performed by Western Blot and the recognition of CD20 was evaluated by immunohistochemistry and flow cytometry. Results: We generated the antibody 1F5, able to recognize by flow cytometry the CD20 molecule expressed on lymphoid human cell lines, as well as peripheral blood mononuclear cells from healthy donors and patients with B-cell lymphoproliferative disorders. However, 1F5 antibody detected the CD20 molecule on fresh tissues, but not on formalin-fixed paraffin embedded tissues,by immunohistochemistry. Conclusions: This work suggests the potential use of 1F5 antibody for the measurement of CD20 expression by flow cytometry in patients with B-cell leukemias or B-cell lymphomas in phase of leukemization. This could complement the studies to ensure the appropriate selection of patients for the treatment with rituximab(AU)


Subject(s)
Humans , Male , Female , Immunoglobulin G/analysis , Patient Selection/ethics , Rituximab/therapeutic use , Antineoplastic Agents, Immunological/therapeutic use , Antibodies/therapeutic use , Antibody Formation , Blotting, Western/methods , Antigens, CD20/analysis
20.
Am J Dermatopathol ; 41(8): 596-601, 2019 Aug.
Article in English | MEDLINE | ID: mdl-31335415

ABSTRACT

B-cell lymphoblastic lymphoma (B-LBL) is a malignant neoplasm of immature B cells that accounts for only 10% of all cases of lymphoblastic lymphoma. Most commonly, B-LBL presents as bony lesions, but in rare cases, the disease manifests cutaneously. We present a case of simultaneous cutaneous and systemic presentation of B-LBL in an otherwise healthy 28-year-old man in which the lymphoblastic infiltrate stained positive for CD79a, Tdt, CD10, and CD20. A diagnosis of cutaneous B-LBL was made, and systemic work-up revealed widespread involvement of the skin, bone, and lymph nodes. Review of all currently described cases of cutaneous B-LBL with or without systemic involvement revealed that the most frequently positive tumor markers were CD79a (92.3%), Tdt (90.6%), and CD10 (83.3%). Systemic involvement of B-LBL was found in nearly half of all cases with cutaneous presentation.


Subject(s)
Leukemia, Lymphoid/diagnosis , Lymphoma, B-Cell/diagnosis , Skin Neoplasms/diagnosis , Adult , Antigens, CD20/analysis , Antineoplastic Combined Chemotherapy Protocols/therapeutic use , Biomarkers, Tumor/analysis , Biopsy , CD79 Antigens/analysis , DNA Nucleotidylexotransferase/antagonists & inhibitors , Dose Fractionation, Radiation , Hematopoietic Stem Cell Transplantation , Humans , Immunohistochemistry , Leukemia, Lymphoid/immunology , Leukemia, Lymphoid/pathology , Leukemia, Lymphoid/therapy , Lymphoma, B-Cell/immunology , Lymphoma, B-Cell/pathology , Lymphoma, B-Cell/therapy , Male , Neprilysin/analysis , Skin Neoplasms/immunology , Skin Neoplasms/pathology , Skin Neoplasms/therapy , Treatment Outcome
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