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1.
PLoS One ; 8(8): e69000, 2013.
Article in English | MEDLINE | ID: mdl-23990878

ABSTRACT

The concept of multifractality is currently used to describe self-similar and complex scaling properties observed in numerous biological signals. Fractals are geometric objects or dynamic variations which exhibit some degree of similarity (irregularity) to the original object in a wide range of scales. This approach determines irregularity of biologic signal as an indicator of adaptability, the capability to respond to unpredictable stress, and health. In the present work, we propose the application of multifractal analysis of wavelet-transformed proton nuclear magnetic resonance ((1)H NMR) spectra of plasma to determine nutritional insufficiency. For validation of this method on (1)H NMR signal of human plasma, standard deviation from classical statistical approach and Hurst exponent (H), left slope and partition function from multifractal analysis were extracted from (1)H NMR spectra to test whether multifractal indices could discriminate healthy subjects from unhealthy, intensive care unit patients. After validation, the multifractal approach was applied to spectra of plasma from a modified crossover study of sulfur amino acid insufficiency and tested for associations with blood lipids. The results showed that standard deviation and H, but not left slope, were significantly different for sulfur amino acid sufficiency and insufficiency. Quadratic discriminant analysis of H, left slope and the partition function showed 78% overall classification accuracy according to sulfur amino acid status. Triglycerides and apolipoprotein C3 were significantly correlated with a multifractal model containing H, left slope, and standard deviation, and cholesterol and high-sensitivity C-reactive protein were significantly correlated to H. In conclusion, multifractal analysis of (1)H NMR spectra provides a new approach to characterize nutritional status.


Subject(s)
Fractals , Nutrition Assessment , Plasma/chemistry , Adult , Aged , Aged, 80 and over , Amino Acids/chemistry , Apolipoproteins C/chemistry , Automation , Body Mass Index , Circadian Rhythm , Critical Care , Critical Illness , Cross-Over Studies , Female , Humans , Lipids/blood , Magnetic Resonance Spectroscopy , Male , Middle Aged , Signal Processing, Computer-Assisted , Sulfur/chemistry , Triglycerides/chemistry , Young Adult
2.
Rapid Commun Mass Spectrom ; 25(23): 3617-26, 2011 Dec 15.
Article in English | MEDLINE | ID: mdl-22095511

ABSTRACT

Mass spectrometry based proteomic experiments have advanced considerably over the past decade with high-resolution and mass accuracy tandem mass spectrometry (MS/MS) capabilities now allowing routine interrogation of large peptides and proteins. Often a major bottleneck to 'top-down' proteomics, however, is the ability to identify and characterize the complex peptides or proteins based on the acquired high-resolution MS/MS spectra. For biological samples containing proteins with multiple unpredicted processing events, unsupervised identifications can be particularly challenging. Described here is a newly created search algorithm (MAR) designed for the identification of experimentally detected peptides or proteins. This algorithm relies only on predefined list of 'differential' modifications (e.g. phosphorylation) and a FASTA-formatted protein database, and is not constrained to full-length proteins for identification. The algorithm is further powered by the ability to leverage identified mass differences between chromatographically separated ions within full-scan MS spectra to automatically generate a list of likely 'differential' modifications to be searched. The utility of the algorithm is demonstrated with the identification of 54 unique polypeptides from human apolipoprotein enriched from the high-density lipoprotein particle (HDL), and searching time benchmarks demonstrate scalability (12 high-resolution MS/MS scans searched per minute with modifications considered). This parallelizable algorithm provides an additional solution for converting high-quality MS/MS data of multiply processed proteins into reliable identifications.


Subject(s)
Algorithms , Databases, Protein , Proteins/chemistry , Proteomics/methods , Tandem Mass Spectrometry/methods , Amino Acid Sequence , Apolipoproteins C/chemistry , Humans , Lipoproteins, HDL/chemistry , Molecular Sequence Data , Peptides/chemistry , Proteins/classification , Sequence Analysis, Protein , Software
4.
J Lipid Res ; 51(6): 1524-34, 2010 Jun.
Article in English | MEDLINE | ID: mdl-20097930

ABSTRACT

We have shown that expression of apolipoprotein (apo) C-III promotes VLDL secretion from transfected McA-RH7777 cells under lipid-rich conditions. To determine structural elements within apoC-III that confer to this function, we contrasted wild-type apoC-III with a mutant Ala23Thr originally identified in hypotriglyceridemia subjects. Although synthesis of [(3)H]glycerol-labeled TAG was comparable between cells expressing wild-type apoC-III (C3wt cells) or Ala23Thr mutant (C3AT cells), secretion of [(3)H]TAG from C3AT cells was markedly decreased. The lowered [(3)H]TAG secretion was associated with an inability of C3AT cells to assemble VLDL(1). Moreover, [(3)H]TAG within the microsomal lumen in C3AT cells was 60% higher than that in C3wt cells, yet the activity of microsomal triglyceride-transfer protein in C3AT cells was not elevated. The accumulated [(3)H]TAG in C3AT microsomal lumen was mainly associated with lumenal IDL/LDL-like lipoproteins. Phenotypically, this [(3)H]TAG fractionation profiling resembled what was observed in cells treated with brefeldin A, which at low dose specifically blocked the second-step VLDL(1) maturation. Furthermore, lumenal [(35)S]Ala23Thr protein accumulated in IDL/LDL fractions and was absent in VLDL fractions in C3AT cells. These results suggest that the presence of Ala23Thr protein in lumenal IDL/LDL particles might prevent effective fusion between lipid droplets and VLDL precursors. Thus, the current study reveals an important structural element residing within the N-terminal region of apoC-III that governs the second step VLDL(1) maturation.


Subject(s)
Apolipoproteins C/genetics , Apolipoproteins C/metabolism , Lipid Metabolism Disorders/genetics , Mutation, Missense , Triglycerides/metabolism , Alanine/genetics , Apolipoproteins C/chemistry , Brefeldin A/pharmacology , Carrier Proteins/metabolism , Cell Line , Gene Expression Regulation , Humans , Lipoproteins, IDL/metabolism , Lipoproteins, LDL/metabolism , Lipoproteins, VLDL/metabolism , Microsomes/metabolism , Models, Molecular , Protein Binding/drug effects , Protein Structure, Secondary , Threonine/genetics
5.
J Lipid Res ; 50(9): 1842-51, 2009 Sep.
Article in English | MEDLINE | ID: mdl-19417222

ABSTRACT

Plasma cholesteryl ester transfer protein (CETP) activity is high in rabbits, intermediate in humans, and nondetectable in rodents. Human apolipoprotein CI (apoCI) was found to be a potent inhibitor of CETP. The aim of this study was to compare the ability of rabbit and human apoCI to modulate the interaction of CETP with HDLs and to evaluate to which extent apoCI contributes to plasma cholesteryl ester transfer rate in normolipidemic humans and rabbits. Rabbit apoCI gene was cloned and sequenced, rabbit and human apoCI were purified to homogeneity, and their ability to modify the surface charge properties and the CETP inhibitory potential of HDL were compared. It is demonstrated that unlike human apoCI, rabbit apoCI does not modulate cholesteryl ester transfer rate in total plasma. Whereas both human and rabbit apoCI readily associate with HDL, only human apoCI was found to modify the electrostatic charge of HDL. In humans, both CETP and apoCI at normal, physiological levels contribute significantly to the plasma cholesteryl ester transfer rate. In contrast, CETP is the sole major determinant of cholesteryl ester transfer in normolipidemic rabbit plasma as a result of the inability of rabbit apoCI to change HDL electronegativity.


Subject(s)
Apolipoproteins C/metabolism , Cholesterol Ester Transfer Proteins/blood , Cholesterol Ester Transfer Proteins/metabolism , Amino Acid Sequence , Animals , Apolipoproteins C/chemistry , Apolipoproteins C/genetics , Cloning, Molecular , Female , Humans , Lipoprotein Lipase/metabolism , Lipoproteins, HDL/metabolism , Male , Middle Aged , Rabbits , Sequence Analysis, DNA
6.
Biophys J ; 94(5): 1735-45, 2008 Mar 01.
Article in English | MEDLINE | ID: mdl-17993480

ABSTRACT

Exchangeable apolipoproteins are located in the surface of lipoprotein particles and regulate lipid metabolism through direct protein-protein and protein-lipid interactions. These proteins are characterized by the presence of tandem repeats of amphiphatic alpha-helix segments and a high surface activity in monolayers and lipoprotein surfaces. A noteworthy aspect in the description of the function of exchangeable apolipoproteins is the requirement of a quantitative account of the relation between their physicochemical and structural characteristics and changes in the mesoscopic system parameters such as the maximum surface pressure and relative stability at interfaces. To comply with this demand, we set out to establish the relations among alpha-helix amphiphilicity, surface concentration, and surface rheology of apolipoproteins ApoA-I, ApoA-II, ApoC-I, ApoC-II, and ApoC-III adsorbed at the air-water interface. Our studies render further insights into the interfacial properties of exchangeable apolipoproteins, including the kinetics of their adsorption and the physical properties of the interfacial layer.


Subject(s)
Apolipoproteins A/chemistry , Apolipoproteins C/chemistry , Adsorption , Base Sequence , Cloning, Molecular , Humans , Hydrophobic and Hydrophilic Interactions , Kinetics , Molecular Sequence Data , Rheology , Surface Properties
8.
J Lipid Res ; 47(4): 755-60, 2006 Apr.
Article in English | MEDLINE | ID: mdl-16432277

ABSTRACT

Disease-associated amyloid deposits contain both fibrillar and nonfibrillar components. The majority of these amyloid components originate or coexist in the bloodstream. To understand the nature of the interaction between the nonfibrillar and fibrillar components, we have developed a centrifugation method to isolate fibril binding proteins from human serum. Amyloid fibrils composed of either Abeta peptide or apolipoprotein C-II (apoC-II) cosedimented with specific serum proteins. Gel electrophoresis, mass spectrometry peptide fingerprinting, and Western analysis identified the major binding species as proteins found in HDL particles, including apoA-I, apoA-II, apoE, clusterin, and serum amyloid A. Sedimentation analysis showed that purified human HDL and recombinant apoA-I lipid particles bound directly to Abeta and apoC-II amyloid fibrils. These studies reveal a novel function of HDL that may contribute to the well-established protective effect of this lipoprotein class in heart disease.


Subject(s)
Amyloid beta-Peptides/metabolism , Amyloid , Apolipoproteins C , Centrifugation/methods , Lipoproteins, HDL/metabolism , Amyloid/chemistry , Amyloid/metabolism , Amyloid beta-Peptides/chemistry , Apolipoprotein C-II , Apolipoproteins C/chemistry , Apolipoproteins C/metabolism , Humans , Lipoproteins, HDL/chemistry , Serum/chemistry
9.
Biochemistry ; 44(30): 10218-26, 2005 Aug 02.
Article in English | MEDLINE | ID: mdl-16042399

ABSTRACT

High-density lipoproteins (HDL) remove cholesterol from peripheral tissues and thereby help to prevent atherosclerosis. Nascent HDL are discoidal complexes composed of a phospholipid bilayer surrounded by protein alpha-helices that are thought to form extensive stabilizing interhelical salt bridges. Earlier we showed that HDL stability, which is necessary for HDL functions, is modulated by kinetic barriers. Here we test the role of electrostatic interactions in the kinetic stability by analyzing the effects of salt, pH, and point mutations on model discoidal HDL reconstituted from human apolipoprotein C-1 (apoC-1) and dimyristoyl phosphatidylcholine (DMPC). Circular dichroism, Trp fluorescence, and light scattering data show that molar concentrations of NaCl or Na(2)SO(4) increase the apparent melting temperature of apoC-1:DMPC complexes by up to 20 degrees C and decelerate protein unfolding. Arrhenius analysis shows that 1 M NaCl stabilizes the disks by deltaDeltaG* approximately equal 3.5 kcal/mol at 37 degrees C and increases the activation energy of their denaturation and fusion by deltaE(a) approximately equal deltaDeltaH* approximately equal 13 kcal/mol, indicating that the salt-induced stabilization is enthalpy-driven. Denaturation studies in various solvent conditions (pH 5.7-8.2, 0-40% sucrose, 0-2 M trimethylamine N-oxide) suggest that the salt-induced disk stabilization results from ionic screening of unfavorable short-range Coulombic interactions. Thus, the dominant electrostatic interactions in apoC-1:DMPC disks are destabilizing. Comparison of the salt effects on the protein:lipid complexes of various composition reveals an inverse correlation between the lipoprotein stability and the salt-induced stabilization and suggests that short-range electrostatic interactions significantly contribute to lipoprotein stability: the better-optimized these interactions are, the more stable the complex is.


Subject(s)
Lipoproteins, HDL/chemistry , Lipoproteins/chemistry , Thermodynamics , Amino Acid Sequence , Apolipoprotein A-I/chemistry , Apolipoprotein C-I , Apolipoproteins C/chemistry , Calorimetry, Differential Scanning , Circular Dichroism , Dimyristoylphosphatidylcholine/chemistry , Humans , Light , Molecular Sequence Data , Scattering, Radiation , Sodium Chloride , Static Electricity , Sulfates
10.
Biol Chem ; 386(5): 441-52, 2005 May.
Article in English | MEDLINE | ID: mdl-15927888

ABSTRACT

The composition, apolipoprotein structure and lipoprotein binding to the LDL receptor were studied for very-low-density (VLDL) and low-density lipoprotein (LDL) particles isolated from subjects with apoE phenotype E3/3 (E3), E2/2 or E2/3 (E2+) and E3/4 or E4/4 (E4+) and a wide range of plasma triglyceride (TG) contents. The data combined for all three phenotype groups can be summarized as follows. (i) A decrease in accessibility of VLDL tryptophan residues to I- anions with a decrease in tryptophan surface density, concomitant with an increase in VLDL dimensions, reflects the increased efficiency of protein-protein interactions. (ii) A gradual increase in the quenching constant for LDL apoB fluorescence with an increase in TG/cholesterol (Chol) ratio reflects the 'freezing' effect of Chol molecules on apoB dynamics. (iii) Different mechanisms specific for a particular lipoprotein from E3/3 or E2/3 subjects are responsible for apoE-mediated VLDL binding and apoB-mediated LDL binding to the LDL receptor in a solid-phase binding assay. (iv) The 'spacing' effect of apoC-III molecules on apoE-mediated VLDL binding results in a decrease in the number of binding sites. (v) The maximum of the dependence of the LDL binding affinity constant on relative tryptophan density corresponds to LDL intermediate size. VLDL particles from hypertriglyceridemic E2/3 heterozygotic individuals had remnant-like properties (increased cholesterol, apoE and decreased apoC-III content) while their binding efficiency was unchanged. Based on the affinity constant value and LDL-Chol content, increased competition between VLDL and LDL for the binding to the LDL receptor upon increase in plasma TG is suggested, and LDL from hypertriglyceridemic E3/3 homozygotic individuals is the most efficient competitor.


Subject(s)
Apolipoproteins E/genetics , Hypertriglyceridemia/metabolism , Lipoproteins, LDL/metabolism , Lipoproteins, VLDL/metabolism , Receptors, LDL/metabolism , Triglycerides/blood , Animals , Apolipoprotein C-III , Apolipoproteins B/chemistry , Apolipoproteins C/chemistry , Apolipoproteins E/chemistry , Cattle , Female , Humans , Lipoproteins, LDL/chemistry , Lipoproteins, VLDL/chemistry , Male , Models, Biological , Phenotype , Protein Isoforms/chemistry , Protein Isoforms/genetics , Receptors, LDL/chemistry
11.
Proteomics ; 4(8): 2242-51, 2004 Aug.
Article in English | MEDLINE | ID: mdl-15274118

ABSTRACT

Early diagnosis and immediate therapeutic interventions are crucial factors to reduce the damage extent and the risk of death. Currently, the diagnosis of stroke relies on neurological assessment of the patient and neuro-imaging techniques including computed tomography and/or magnetic resonance imaging scan. An early diagnostic marker of stroke, ideally capable to discriminate ischemic from hemorrhagic stroke would considerably improve patient acute management. Using surface-enhanced laser desorption/ionization (SELDI) technology, we aimed at finding new early diagnostic plasmatic markers of stroke. Strong anionic exchange (SAX) SELDI profiles of plasma samples from 21 stroke patients were compared to 21 samples from healthy controls. Seven peaks appeared to be differentially expressed with significant p values (p < 0.05). Proteins were stripped from the SAX chips, separated on a one-dimensional electrophoresis (1-DE) gel and stained using mass spectrometry (MS)-compatible silver staining. Following in-gel tryptic digestion, the peptides were analyzed by MS. Four candidate proteins were identified as apolipoprotein CI (ApoC-I), apolipoprotein CIII (ApoC-III), serum amyloid A (SAA), and antithrombin-III fragment (AT-III fragment). Assessment of ApoC-I and ApoC-III levels in plasma samples using a sandwich enzyme-linked immunosorbent assay (ELISA) allowed to distinguish between hemorrhagic (n = 15) and ischemic (n = 16) stroke (p < 0.001). To the best of our knowledge, ApoC-I and ApoC-III are the first reported plasmatic biomarkers capable to accurately distinguish between ischemic and hemorrhagic stroke in a small number of patients. It requires further investigation in a large cohort of patients.


Subject(s)
Apolipoproteins C , Brain Ischemia/blood , Cerebral Hemorrhage/blood , Adult , Aged , Aged, 80 and over , Apolipoprotein C-I , Apolipoprotein C-III , Apolipoproteins C/blood , Apolipoproteins C/chemistry , Biomarkers , Brain Ischemia/diagnosis , Cerebral Hemorrhage/diagnosis , Female , Gene Expression Profiling , Humans , Male , Mass Spectrometry/methods , Middle Aged , Protein Array Analysis
12.
Biochemistry ; 43(26): 8503-9, 2004 Jul 06.
Article in English | MEDLINE | ID: mdl-15222761

ABSTRACT

The intercellular transport of cholesterol and triglycerides via lipoproteins interacting with their receptors is a critical component in human lipid metabolism. The delivery of cholesterol to cells is accomplished primarily through low-density lipoproteins (LDLs), while the transport of fatty acids to adipose and muscle tissue is accomplished primarily through the actions of very low-density lipoproteins (VLDLs). Disruption of lipoprotein structure leading to impaired binding between these lipoproteins and their obligate receptors is a known risk factor for cardiovascular disease. Because of recent investigations linking 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) exposure in humans with coronary artery disease, investigations have been carried out by fluorescence and circular dichroism to evaluate conformational changes in LDL and VLDL structure upon binding of TCDD. These studies demonstrate that, at a molar ratio of three TCDD molecules to one lipoprotein molecule, TCDD binds and disrupts the secondary and tertiary lipoprotein structure. Circular dichroism studies show that residues within the inner core of apoC-II, which compose a four-alpha-helix bundle when this apolipoprotein is associated with VLDL, are directly affected upon binding TCDD. Fluorescence also indicates the specific interaction of Trp-48 within apoC-II upon TCDD binding. We found that the TCDD/apoC-II complex suffers a 5-fold reduction in its ability to bind lipoprotein lipase compared to untreated apoC-II. The interaction of TCDD with LDL markedly altered the secondary structure of apoB reducing its alpha-helical content. These cumulative responses in lipoprotein structure may impair the LDL and VLDL cellular uptake leading to a buildup of serum lipoproteins and fats thus hastening the development of coronary artery disease.


Subject(s)
Apolipoproteins C/chemistry , Dioxins/chemistry , Lipoproteins, VLDL/chemistry , Tryptophan/chemistry , Apolipoprotein C-II , Apolipoproteins/chemistry , Cardiovascular Diseases , Circular Dichroism , Coronary Vessels/pathology , Humans , Lipoprotein Lipase/chemistry , Lipoproteins, LDL/chemistry , Models, Chemical , Polychlorinated Dibenzodioxins/adverse effects , Protein Binding , Protein Structure, Secondary , Spectrometry, Fluorescence
13.
Biochemistry ; 43(25): 8084-93, 2004 Jun 29.
Article in English | MEDLINE | ID: mdl-15209504

ABSTRACT

The structure of human apolipoprotein C-II (apoC-II) in the presence of dodecyl phosphocholine (DPC) micelles has been investigated by NMR spectroscopy. The resulting structural information is compared to that available for apoC-II in the presence of sodium dodecyl sulfate, revealing a high level of overall similarity but several significant differences. These findings further our understandings of the structural basis for apoC-II function. The interactions of the protein with the detergent micelle are probed using intermolecular nuclear Overhauser effects (NOEs) and paramagnetic agents. These interactions are seen across almost the full length of apoC-II and show the periodicity expected for an amphipathic helix interacting with the amphipathic surface of the DPC micelle. Furthermore, we observe specific contacts between lysine residues of apoC-II and protons near the phosphate group of DPC, consistent with the predictions of the so-called "snorkel hypothesis" of the structural basis for the apolipoprotein/lipid interaction (Segrest, J. P., Jackson, R. L., Morrisett, J. D., and Gotto, A. M., Jr. (1974) A molecular theory of lipid-protein interactions in the plasma lipoproteins, FEBS Lett 38, 247-258.). These findings offer the most detailed structural information available for the interaction between an apolipoprotein and the phospholipids of the lipoprotein surface and provide the first direct structural support for the snorkel hypothesis.


Subject(s)
Apolipoproteins C/chemistry , Apolipoproteins C/metabolism , Phosphorylcholine/analogs & derivatives , Phosphorylcholine/chemistry , Phosphorylcholine/metabolism , Amino Acid Sequence , Amino Acids/chemistry , Apolipoprotein C-II , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Cyclic N-Oxides/chemistry , Humans , Manganese/chemistry , Micelles , Models, Molecular , Molecular Sequence Data , Nuclear Magnetic Resonance, Biomolecular/methods , Protein Structure, Secondary , Spin Labels
14.
J Biol Chem ; 279(20): 21038-45, 2004 May 14.
Article in English | MEDLINE | ID: mdl-15031287

ABSTRACT

Amyloid deposits are proteinaceous extra-cellular aggregates associated with a diverse range of disease states. These deposits are composed predominantly of amyloid fibrils, the unbranched, beta-sheet rich structures that result from the misfolding and subsequent aggregation of many proteins. In addition, amyloid deposits contain a number of non-fibrillar components that interact with amyloid fibrils and are incorporated into the deposits in their native folded state. The influence of a number of the non-fibrillar components in amyloid-related diseases is well established; however, the mechanisms underlying these effects are poorly understood. Here we describe the effect of two of the most important non-fibrillar components, serum amyloid P component and apolipoprotein E, upon the solution behavior of amyloid fibrils in an in vitro model system. Using analytical ultracentrifugation, electron microscopy, and rheological measurements, we demonstrate that these non-fibrillar components cause soluble fibrils to condense into localized fibrillar aggregates with a greatly enhanced local density of fibril entanglements. These results suggest a possible mechanism for the observed role of non-fibrillar components as mediators of amyloid deposition and deposit stability.


Subject(s)
Amyloid/physiology , Apolipoproteins C/chemistry , Apolipoproteins C/ultrastructure , Serum Amyloid P-Component/chemistry , Serum Amyloid P-Component/ultrastructure , Amyloid/chemistry , Apolipoprotein C-II , Apolipoproteins C/isolation & purification , Humans , Kinetics , Microscopy, Electron , Neurofibrillary Tangles/ultrastructure , Rheology , Serum Amyloid P-Component/isolation & purification , Sodium Chloride/pharmacology , Viscosity
15.
Acta Crystallogr D Biol Crystallogr ; 60(Pt 3): 493-8, 2004 Mar.
Article in English | MEDLINE | ID: mdl-14993674

ABSTRACT

The blue carotenoprotein alpha-crustacyanin of Homarus gammarus lobster carapace is comprised chemically of five 20 kDa subunits. Only two genes for the proteins have been isolated (J. B. C. Findlay, personal communication) and the five apoproteins fall into two sets of homologous proteins based on their chemical properties (CRTC, consisting of apoproteins C(1), C(2) and A(1), and CRTA, consisting of apoproteins A(2) and A(3)). The diffraction quality of apo C(2) has been improved from 2.2 to 1.3 A and its structure solved. The structure is compared with the A(1) and C(1) proteins determined at 1.4 A [Cianci et al. (2001), Acta Cryst. D57, 1219-1229] and 1.15 A, respectively [Gordon et al. (2001), Acta Cryst. D57, 1230-1237] and found to be very similar. Normalized B-factor difference plots per residue of different types were used to try to find chemically modified residues; none were found at these resolutions. It remains possible that the differences between the CRTC proteins result from differences in amidation. By comparison of a crystal grown with glycerol (studied at 1.6 A) and one grown without glycerol (studied at 1.3 A) it was seen that glycerol bound at the astaxanthin site.


Subject(s)
Apolipoprotein A-I , Apolipoproteins C , Nephropidae/chemistry , Protein Processing, Post-Translational , Proteins/chemistry , Structural Homology, Protein , Animals , Apolipoprotein A-I/chemistry , Apolipoprotein A-I/metabolism , Apolipoproteins C/chemistry , Apolipoproteins C/metabolism , Carrier Proteins , Crystallization , Crystallography, X-Ray , Protein Structure, Tertiary
16.
Arterioscler Thromb Vasc Biol ; 24(2): 264-9, 2004 Feb.
Article in English | MEDLINE | ID: mdl-14670935

ABSTRACT

OBJECTIVE: Apolipoprotein C-I (apoC-I) influences lipoprotein metabolism, but little is known about its cellular effects in aortic smooth muscle cells (ASMC). METHODS AND RESULTS: In cultured human ASMC, apoC-I and immunoaffinity purified apoC-I-enriched high-density lipoproteins (HDL) markedly induced apoptosis (5- to 25-fold), compared with control cells, apoC-I-poor HDL, and apolipoprotein C-III (apoC-III) as determined by 4', 6-diamidino-2-phenylindole dihydrochloride staining and DNA ladder assay. Preincubation of cells with GW4869, an inhibitor of neutral sphingomyelinase (N-SMase), blocked apoC-I-induced apoptosis, an effect that was bypassed by C-2 ceramide. The activity of N-SMase was increased 2- to 3-fold in ASMC by apoC-I, apoC-I-enriched HDL, and tumor necrosis factor alpha (TNF-alpha) (positive control) after 10 minutes and then decreased over 60 minutes, which is a kinetic pattern not seen with controls, apoC-III, and apoC-I-poor HDL. ApoC-I and apoC-I-enriched HDL stimulated the generation of ceramide, the release of cytochrome c from mitochondria, and activation of caspase-3 greater than that found in controls, apoC-III, and apoC-I-poor HDL. GW4869 inhibited apoC-I-induced production of ceramide and cytochrome c release. CONCLUSIONS: ApoC-I and apoC-I-enriched HDL activate the N-SMase-ceramide signaling pathway, leading to apoptosis in human ASMC, which is an effect that may promote plaque rupture in vivo.


Subject(s)
Aorta/cytology , Apolipoproteins C/pharmacology , Apoptosis/drug effects , Muscle, Smooth, Vascular/drug effects , Muscle, Smooth, Vascular/enzymology , Sphingomyelin Phosphodiesterase/physiology , Aniline Compounds/pharmacology , Aorta/drug effects , Aorta/enzymology , Apolipoprotein C-I , Apolipoproteins C/chemistry , Benzylidene Compounds/pharmacology , Caspase 3 , Caspases/metabolism , Ceramides/biosynthesis , Cytochromes c/metabolism , Enzyme Activation/drug effects , Enzyme Inhibitors/pharmacology , Humans , Lipoproteins, HDL/chemistry , Lipoproteins, HDL/pharmacology , Mitochondria/metabolism , Muscle, Smooth, Vascular/cytology , Signal Transduction/drug effects , Signal Transduction/physiology , Sphingomyelin Phosphodiesterase/antagonists & inhibitors , Sphingomyelin Phosphodiesterase/metabolism
17.
Biophys J ; 85(6): 3802-12, 2003 Dec.
Article in English | MEDLINE | ID: mdl-14645070

ABSTRACT

The interactions between phospholipid molecules in suspensions have been studied by using mass spectrometry. Electrospray mass spectra of homogeneous preparations formed from three different phospholipid molecules demonstrate that under certain conditions interactions between 90 and 100 lipid molecules can be preserved. In the presence of apolipoprotein C-II, a phospholipid binding protein, a series of lipid molecules and the protein were observed in complexes. The specificity of binding was demonstrated by proteolysis; the resulting mass spectra reveal lipid-bound peptides that encompass the proposed lipid-binding domain. The mass spectra of heterogeneous suspensions and their complexes with apolipoprotein C-II demonstrate that the protein binds simultaneously to two different phospholipids. Moreover, when apolipoprotein C-II is added to lipid suspensions formed with local concentrations of the same lipid molecule, the protein is capable of remodeling the distribution to form one that is closer to a statistical arrangement. These observations demonstrate a capacity for apolipoprotein C-II to change the topology of the phospholipid surface. More generally, these results highlight the fact that mass spectrometry can be used to probe lipid interactions in both homogeneous and heterogeneous suspensions and demonstrate reorganization of the distribution of lipids upon surface binding of apolipoprotein C-II.


Subject(s)
Apolipoproteins C/chemistry , Mass Spectrometry/methods , Phospholipids/chemistry , Apolipoprotein C-II , Chymotrypsin/chemistry , Chymotrypsin/pharmacology , Escherichia coli/metabolism , Ions , Lipids/chemistry , Magnetic Resonance Spectroscopy , Models, Molecular , Protein Binding , Protein Conformation , Protein Structure, Tertiary , Sodium Dodecyl Sulfate/chemistry , Spectrometry, Mass, Electrospray Ionization
18.
Biophys J ; 85(6): 3979-90, 2003 Dec.
Article in English | MEDLINE | ID: mdl-14645087

ABSTRACT

Amyloid fibrils have historically been characterized by diagnostic dye-binding assays, their fibrillar morphology, and a "cross-beta" x-ray diffraction pattern. Whereas the latter demonstrates that amyloid fibrils have a common beta-sheet core structure, they display a substantial degree of morphological variation. One striking example is the remarkable ability of human apolipoprotein C-II amyloid fibrils to circularize and form closed rings. Here we explore in detail the structure of apoC-II amyloid fibrils using electron microscopy, atomic force microscopy, and x-ray diffraction studies. Our results suggest a model for apoC-II fibrils as ribbons approximately 2.1-nm thick and 13-nm wide with a helical repeat distance of 53 nm +/- 12 nm. We propose that the ribbons are highly flexible with a persistence length of 36 nm. We use these observed biophysical properties to model the apoC-II amyloid fibrils either as wormlike chains or using a random-walk approach, and confirm that the probability of ring formation is critically dependent on the fibril flexibility. More generally, the ability of apoC-II fibrils to form rings also highlights the degree to which the common cross-beta superstructure can, as a function of the protein constituent, give rise to great variation in the physical properties of amyloid fibrils.


Subject(s)
Amyloid/chemistry , Apolipoproteins C/chemistry , Apolipoprotein C-II , Biophysical Phenomena , Biophysics , Humans , Kinetics , Microscopy, Atomic Force , Microscopy, Electron , Monte Carlo Method , Protein Binding , Protein Conformation , Protein Structure, Secondary , X-Ray Diffraction
19.
Biophys J ; 84(4): 2562-9, 2003 Apr.
Article in English | MEDLINE | ID: mdl-12668464

ABSTRACT

A novel bead modeling technique has been developed for the analysis of the sedimentation velocity behavior of flexible fibrils. The method involves the generation of a family of bead models representing a sample of the conformations available to the molecule and the calculation of the sedimentation coefficients of these models by established techniques. This approach has been used to investigate the size distribution of amyloid fibrils formed by human apolipoprotein C-II (apoC-II). ApoC-II fibrils have a simple and homogeneous ribbon morphology with no evidence of amorphous aggregation. Freshly prepared apoC-II forms fibrils with systematically larger sedimentation coefficients upon increasing protein concentration (modes of 100, 300, and 800 for apoC-II concentrations of 0.3, 0.7, and 1.0 mg/mL, respectively). The sedimentation coefficient distributions are not affected by rotor speed, and are not significantly changed by dilution once the fibrils are formed. The kinetics of aggregation (1 mg/mL apoC-II) as assessed using thioflavin T and preparative pelleting assays reveal that monomeric apoC-II is depleted after approximately 12 h incubation at room temperature. In contrast, the sedimentation coefficient distribution of fibrils continues to grow larger over a period of 48 h to an average value of 800 S. Calculations using the bead modeling procedure suggest maximum sedimentation coefficients for individual apoC-II fibrils to be around 100 S. The larger experimentally observed sedimentation coefficients for apoC-II fibrils indicate an extensive and time-dependent tangling or association of the fibrils to form specific networks.


Subject(s)
Amyloid beta-Peptides/chemistry , Apolipoproteins C/chemistry , Fractionation, Field Flow/methods , Models, Molecular , Rheology/methods , Macromolecular Substances , Molecular Weight , Particle Size , Protein Conformation
20.
Biochemistry ; 42(16): 4751-8, 2003 Apr 29.
Article in English | MEDLINE | ID: mdl-12705839

ABSTRACT

To probe the role of protein conformation in the formation and kinetic stability of discoidal lipoproteins, thermal unfolding and refolding studies were carried out using model lipoproteins reconstituted from dimyristoylphosphatidylcholine (DMPC) and selected mutants of human apolipoprotein C-1 (apoC-1). Circular dichroism (CD) spectroscopy and electron microscopy show that the Q31P mutant, which has alpha-helical content in solution (33%) and on DMPC disks (67%) similar to that of the wild type (WT), forms disks of smaller diameter, = 13 nm, compared to 17 nm of the WT-DMPC disks. The L34P mutant, which is largely unfolded in solution, forms disks with alpha-helix content and diameter similar to those of the WT. The R23P mutant, which is fully unfolded in solution, forms disks that have similar diameter but reduced alpha-helix content (40%) compared to the WT-DMPC disks (65%). Remarkably, despite large variations in the alpha-helix content or the disk diameter among different mutant-DMPC complexes, the mutations have no significant effect on the unfolding rates or the Arrhenius activation energy of the disk denaturation, E(a) = 25-29 kcal/mol. This suggests that the kinetic stability of the discoidal complexes is dominated by the lipid-lipid rather than the protein-lipid interactions. In contrast to the heat denaturation, the lipoprotein reconstitution upon cooling monitored by CD and light scattering is significantly affected by mutations, with Q31P forming disks in the broadest and R23P in the narrowest temperature range. Our results suggest that the apolipoprotein helical structure in solution facilitates reconstitution of discoidal lipoproteins but has no significant effect on their kinetic stability.


Subject(s)
Apolipoproteins C/chemistry , Apolipoproteins C/genetics , Lipoproteins/chemistry , Apolipoprotein C-I , Circular Dichroism , Dimyristoylphosphatidylcholine/chemistry , Humans , Kinetics , Lipoproteins/ultrastructure , Models, Molecular , Mutation , Protein Denaturation , Protein Folding , Protein Structure, Secondary , Temperature
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