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1.
Int J Mol Sci ; 23(20)2022 Oct 19.
Article in English | MEDLINE | ID: mdl-36293420

ABSTRACT

d-Arabinofuranosyl-pyrimidine and -purine nucleoside analogues containing alkylthio-, acetylthio- or 1-thiosugar substituents at the C2' position were prepared from the corresponding 3',5'-O-silylene acetal-protected nucleoside 2'-exomethylenes by photoinitiated, radical-mediated hydrothiolation reactions. Although the stereochemical outcome of the hydrothiolation depended on the structure of both the thiol and the furanoside aglycone, in general, high d-arabino selectivity was obtained. The cytotoxic effect of the arabinonucleosides was studied on tumorous SCC (mouse squamous cell) and immortalized control HaCaT (human keratinocyte) cell lines by MTT assay. Three pyrimidine nucleosides containing C2'-butylsulfanylmethyl or -acetylthiomethyl groups showed promising cytotoxicity at low micromolar concentrations with good selectivity towards tumor cells. SAR analysis using a methyl ß-d-arabinofuranoside reference compound showed that the silyl-protecting group, the nucleobase and the corresponding C2' substituent are crucial for the cell growth inhibitory activity. The effects of the three most active nucleoside analogues on parameters indicative of cytotoxicity, such as cell size, division time and cell generation time, were investigated by near-infrared live cell imaging, which showed that the 2'-acetylthiomethyluridine derivative induced the most significant functional and morphological changes. Some nucleoside analogues also exerted anti-SARS-CoV-2 and/or anti-HCoV-229E activity with low micromolar EC50 values; however, the antiviral activity was always accompanied by significant cytotoxicity.


Subject(s)
COVID-19 , Pyrimidine Nucleosides , Thiosugars , Humans , Mice , Animals , Arabinonucleosides/chemistry , Arabinonucleosides/pharmacology , Nucleosides/pharmacology , Nucleosides/chemistry , Antiviral Agents/pharmacology , Acetals , Sulfhydryl Compounds/chemistry , Purines , Structure-Activity Relationship
2.
Mediators Inflamm ; 2021: 7372893, 2021.
Article in English | MEDLINE | ID: mdl-33551679

ABSTRACT

BACKGROUND: Our previous research showed the antioxidant activity of anthocyanins extracted from Aronia melanocarpa of black chokeberry in vitro. Ischemia acute kidney injury is a significant risk in developing progressive and deterioration of renal function leading to clinic chronic kidney disease. There were many attempts to protect the kidney against this progression of renal damage. Current study was designed to examine the effect of pretreatment with three anthocyanins named cyanidin-3-arabinoside, cyanidin-3-glucodise, and cyaniding-3-galactoside against acute ischemia-reperfusion injury in mouse kidney. METHODS: Acute renal injury model was initiated by 30 min clamping bilateral renal pedicle and followed by 24-hour reperfusion in C57Bl/6J mice. Four groups of mice were orally pretreated in 50 mg/g/12 h for two weeks with cyanidin-3-arabinoside, cyanidin-3-glucodise, and cyaniding-3-galactoside and anthocyanins (three-cyanidin mixture), respectively, sham-control group and the renal injury-untreated groups only with saline. RESULTS: The model resulted in renal dysfunction with high serum creatinine, blood urea nitrogen, and changes in proinflammatory cytokines (TNF-ɑ, IL-1ß, IL-6, and MCP-1), renal oxidative stress (SOD, GSH, and CAT), lipid peroxidation (TBARS and MDA), and apoptosis (caspase-9). Pretreatment of two weeks resulted in different extent amelioration of renal dysfunction and tubular damage and suppression of proinflammatory cytokines, oxidative stress, lipid peroxidation, and apoptosis, thus suggesting that cyanidins are potentially effective in acute renal ischemia by the decrease of inflammation, oxidative stress, and lipid peroxidation, as well as apoptosis. CONCLUSION: the current study provided the first attempt to investigate the role of anthocyanins purified from Aronia melanocarpa berry in amelioration of acute renal failure via antioxidant and cytoprotective effects.


Subject(s)
Anthocyanins/metabolism , Kidney Failure, Chronic/metabolism , Kidney/drug effects , Photinia/metabolism , Reperfusion Injury , Animals , Anthocyanins/chemistry , Antioxidants/chemistry , Apoptosis , Arabinonucleosides/chemistry , Body Weight , Caspase 9/metabolism , Fruit , Galactosides/chemistry , Inflammation , Kidney/metabolism , Lipid Peroxidation , Mice , Mice, Inbred C57BL , Oxidative Stress/drug effects , Reperfusion , Risk
3.
Bioorg Med Chem ; 28(16): 115611, 2020 08 15.
Article in English | MEDLINE | ID: mdl-32690266

ABSTRACT

An antisense oligonucleotide is expected as an innovative drug for cancer and hereditary diseases. In this paper, we designed and synthesized DNAs containing a novel nucleoside analog, 1-(4-C-aminomethyl-2-deoxy-2-fluoro-ß-d-arabinofuranosyl)thymine, and evaluated their properties. It was revealed that the analog slightly decreases the thermal stability of the DNA/RNA duplex but significantly increases the stability of DNA in a buffer containing bovine serum. Furthermore, it turned out that the DNA/RNA duplex containing the analog is a good substrate for Escherichia coli RNase H. Thus, DNAs containing the nucleoside analog would be good candidates for the development of therapeutic antisense oligonucleotides.


Subject(s)
Arabinonucleosides/chemistry , Arabinonucleosides/pharmacology , DNA/metabolism , Enzyme Activation/drug effects , RNA/metabolism , Ribonuclease H/metabolism , Animals , Cattle , Escherichia coli/enzymology , Hydrolysis/drug effects
4.
ACS Chem Biol ; 15(7): 1949-1963, 2020 07 17.
Article in English | MEDLINE | ID: mdl-32520524

ABSTRACT

Cytokinins are plant hormones with biological functions ranging from coordination of plant growth to the regulation of biotic and abiotic stress-related responses and senescence. The components of the plant immune system can learn from past elicitations by microbial pathogens and herbivores and adapt to new threats. It is known that plants can enter the primed state of enhanced defense induced by either natural or synthetic compounds. While the involvement of cytokinins in defense priming has been documented, no comprehensive model of their action has been provided to date. Here, we report the functional characterization of two aromatic cytokinin derivatives, 6-benzylaminopurine-9-arabinosides (BAPAs), 3-methoxy-BAPA and 3-hydroxy-BAPA, that proved to be effective in delaying senescence in detached leaves while having low interactions with the cytokinin pathway. An RNA-seq profiling study on Arabidopsis leaves treated with 3-methoxy-BAPA revealed that short and extended treatments with this compound shifted the transcriptional response markedly toward defense. Both treatments revealed upregulation of genes involved in processes associated with plant innate immunity such as cell wall remodeling and upregulation of specific MAP kinases, most importantly MPK11, which is a MAPK module involved in stress-related signaling during the pathogen-associated molecular patterns (PAMPs) response. In addition, elevated levels of JA and its metabolites, jasmonate/ethylene-driven upregulation of PLANT DEFENSIN 1.2 (PDF1.2) and other defensins, and also temporarily elevated levels of reactive oxygen species marked the plant response to 3-methoxy-BAPA treatment. Synergistic interactions were observed when plants were cotreated with 3-hydroxy-BAPA and the flagellin-derived bacterial PAMP peptide (flg22), leading to the enhanced expression of the PAMP-triggered immunity (PTI) marker gene FRK1. Our data collectively show that some BAPAs can sensitively prime the PTI responses in a low micromolar range of concentrations while having no observable negative effects on the overall fitness of the plant.


Subject(s)
Arabinonucleosides/pharmacology , Cytokinins/pharmacology , Plant Immunity/drug effects , Plant Leaves/drug effects , Arabidopsis/chemistry , Arabidopsis/metabolism , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Arabinonucleosides/chemistry , Cytokinins/chemistry , Gene Expression Regulation, Plant/drug effects , MAP Kinase Signaling System/drug effects , Mitogen-Activated Protein Kinases/genetics , Mitogen-Activated Protein Kinases/metabolism , Molecular Structure , Pathogen-Associated Molecular Pattern Molecules/pharmacology , Structure-Activity Relationship
5.
Eur J Pharm Sci ; 134: 266-273, 2019 Jun 15.
Article in English | MEDLINE | ID: mdl-31028821

ABSTRACT

Acute Lymphoblastic Leukemia (ALL) represents 30% of all childhood cancers and children younger than 5 years old have the highest risk for developing ALL. Existing ALL drugs do not respond in approximately 20% of treatment. Therefore, drug development studies against ALL must be continued with either developing existing drugs or discovering new ones. In this study, we evaluated the U.S Food and Drug Administration (FDA) approved ALL drugs according to their physicochemical and pharmaceutical properties, and Nelarabine was found to have the highest bioactivity score. Using the key strategy of bioisosterism commonly accepted by medicinal chemists, we investigated in silico ADME properties, drug-likeness, and biological activity of new designed twenty-four compounds including Nelarabine. The results were evaluated in terms of two classifications: broad spectrum biological activity and filtering of five different drug likeness criteria of the literature including Lipinski's rule of five. We interestingly observed that silicon incorporated compounds exhibited better performance on both criteria by targeting broader spectrum of drug receptors including G-protein coupled receptor (GPCR), ion channel modulator, kinase inhibitor, protease and enzyme inhibitor and by satisfying all of five different drug-likeness criteria reported in the literature. Design compound C19 appeared as a potential drug candidate for further pharmacological research.


Subject(s)
Antineoplastic Agents/chemistry , Arabinonucleosides/chemistry , Arabinonucleosides/therapeutic use , Drug Discovery/methods , Precursor Cell Lymphoblastic Leukemia-Lymphoma/drug therapy , Biological Availability , Child , Child, Preschool , Drug Design , Drug Screening Assays, Antitumor , Humans , Infant , Infant, Newborn , Silicon , United States , United States Food and Drug Administration
6.
Xenobiotica ; 49(7): 840-851, 2019 Jul.
Article in English | MEDLINE | ID: mdl-30022699

ABSTRACT

The concentrative nucleoside transporters (CNT; solute carrier family 28 (SLC28)) and the equilibrative nucleoside transporters (ENT; solute carrier family 29 (SLC29)) are important therapeutic targets but may also mediate toxicity or adverse events. To explore the relative role of the base and the monosaccharide moiety in inhibitor selectivity we selected compounds that either harbor an arabinose moiety or a cytosine moiety, as these groups had several commercially available drug members. The screening data showed that more compounds harboring a cytosine moiety displayed potent interactions with the CNTs than compounds harboring the arabinose moiety. In contrast, ENTs showed a preference for compounds with an arabinose moiety. The correlation between CNT1 and CNT3 was good as five of six compounds displayed IC50 values within the threefold threshold and one displayed a borderline 4-fold difference. For CNT1 and CNT2 as well as for CNT2 and CNT3 only two of six IC50 values correlated and one displayed a borderline 4-fold difference. Interestingly, of the six compounds that potently interacted with both ENT1 and ENT2 only nelarabine displayed selectivity. Our data show differences between inhibitor selectivities of CNTs and ENTs as well as differences within the CNT family members.


Subject(s)
Antiviral Agents , Arabinonucleosides , Equilibrative Nucleoside Transporter 1 , Membrane Transport Proteins , Animals , Antiviral Agents/chemistry , Antiviral Agents/pharmacokinetics , Antiviral Agents/pharmacology , Arabinonucleosides/chemistry , Arabinonucleosides/pharmacokinetics , Arabinonucleosides/pharmacology , Dogs , Equilibrative Nucleoside Transporter 1/antagonists & inhibitors , Equilibrative Nucleoside Transporter 1/genetics , Equilibrative Nucleoside Transporter 1/metabolism , Humans , Madin Darby Canine Kidney Cells , Membrane Transport Proteins/genetics , Membrane Transport Proteins/metabolism
7.
Nucleic Acids Res ; 45(20): 11535-11546, 2017 Nov 16.
Article in English | MEDLINE | ID: mdl-29036537

ABSTRACT

Human telomeres and promoter regions of genes fulfill a significant role in cellular aging and cancer. These regions comprise of guanine and cytosine-rich repeats, which under certain conditions can fold into G-quadruplex (G4) and i-motif structures, respectively. Herein, we use UV, circular dichroism and NMR spectroscopy to study several human telomeric sequences and demonstrate that G4/i-motif-duplex interconversion kinetics are slowed down dramatically by 2'-ß-fluorination and the presence of G4/i-motif-duplex junctions. NMR-monitored kinetic experiments on 1:1 mixtures of native and modified C- and G-rich human telomeric sequences reveal that strand hybridization kinetics are controlled by G4 or i-motif unfolding. Furthermore, we provide NMR evidence for the formation of a hybrid complex containing G4 and i-motif structures proximal to a duplex DNA segment at neutral pH. While the presence of i-motif and G4 folds may be mutually exclusive in promoter genome sequences, our results suggest that they may co-exist transiently as intermediates in telomeric sequences.


Subject(s)
Arabinonucleosides/chemistry , DNA/chemistry , G-Quadruplexes , Telomere/genetics , Base Composition/genetics , Base Sequence , Circular Dichroism , Cytosine/chemistry , Guanine/chemistry , Humans , Kinetics , Magnetic Resonance Spectroscopy , Promoter Regions, Genetic/genetics
8.
J Am Chem Soc ; 139(40): 14021-14024, 2017 10 11.
Article in English | MEDLINE | ID: mdl-28945366

ABSTRACT

Tumor-targeted drug delivery with simultaneous cancer imaging is highly desirable for personalized medicine. Herein, we report a supramolecular approach to design a promising class of multifunctional nanoparticles based on molecular recognition of nucleobases, which combine excellent tumor-targeting capability via aptamer, controlled drug release, and efficient fluorescent imaging for cancer-specific therapy. First, an amphiphilic prodrug dioleoyl clofarabine was self-assembled into micellar nanoparticles with hydrophilic nucleoside analogue clofarabine on their surface. Thereafter, two types of single-stranded DNAs that contain the aptamer motif and fluorescent probe Cy5.5, respectively, were introduced onto the surface of the nanoparticles via molecular recognition between the clofarabine and the thymine on DNA. These drug-containing multifunctional nanoparticles exhibit good capabilities of targeted clofarabine delivery to the tumor site and intracellular controlled drug release, leading to a robust and effective antitumor effect in vivo.


Subject(s)
Adenine Nucleotides/administration & dosage , Aptamers, Nucleotide/chemistry , Arabinonucleosides/administration & dosage , Delayed-Action Preparations/chemistry , Fluorescent Dyes/chemistry , Nanoparticles/chemistry , Neoplasms/drug therapy , Prodrugs/administration & dosage , Adenine Nucleotides/chemistry , Adenine Nucleotides/pharmacokinetics , Adenine Nucleotides/therapeutic use , Animals , Arabinonucleosides/chemistry , Arabinonucleosides/pharmacokinetics , Arabinonucleosides/therapeutic use , Cell Line, Tumor , Clofarabine , Drug Delivery Systems , Drug Liberation , Humans , Mice , Neoplasms/diagnostic imaging , Nucleosides/chemistry , Optical Imaging , Prodrugs/chemistry , Prodrugs/pharmacokinetics , Prodrugs/therapeutic use
9.
Expert Rev Hematol ; 10(1): 1-8, 2017 Jan.
Article in English | MEDLINE | ID: mdl-27869523

ABSTRACT

INTRODUCTION: T-cell acute lymphoblastic leukemia (ALL) and lymphoma (LBL) are aggressive hematologic neoplasms that are treated with combination chemotherapy in the frontline, but have limited options in the relapsed or refractory setting. Based on observations in patients with purine nucleoside phosphorylase (PNP) deficiency, a guanosine nucleoside analogue, arabinosylguanine (ara-G) was developed that provided T-cell specificity. Nelarabine was developed as the water-soluble, clinically useful-prodrug of ara-G and based on its activity was approved for the treatment of relapsed or refractory T-ALL/LBL. Areas covered: In this narrative review, we will summarize the preclinical studies, early dose-finding studies, and efficacy studies that led to approval of nelarabine. The review will succinctly cover response rates and safety signals reported during clinical development. We will also cover more recent work with nelarabine, including combination studies, modified dosing schedules, and frontline treatment approaches. Expert commentary: Based on evidence from the literature review and our own experience with nelarabine, we conclude that it is an effective agent in the treatment of T-cell malignancies. Understanding the factors that modulate the risk of dose-limiting neurotoxicity, how to mitigate this toxicity, and how to safely combine it with other active agents will continue to broaden its use.


Subject(s)
Antineoplastic Agents/therapeutic use , Arabinonucleosides/therapeutic use , Precursor Cell Lymphoblastic Leukemia-Lymphoma/drug therapy , Adult , Age Factors , Animals , Antineoplastic Agents/administration & dosage , Antineoplastic Agents/chemistry , Antineoplastic Agents/pharmacology , Antineoplastic Combined Chemotherapy Protocols/therapeutic use , Arabinonucleosides/chemistry , Arabinonucleosides/pharmacology , Child , Clinical Trials, Phase I as Topic , Clinical Trials, Phase II as Topic , Clinical Trials, Phase III as Topic , Drug Evaluation, Preclinical , Humans , Precursor Cell Lymphoblastic Leukemia-Lymphoma/diagnosis , Precursor Cell Lymphoblastic Leukemia-Lymphoma/mortality , Treatment Outcome
10.
J Pharm Biomed Anal ; 135: 106-115, 2017 Feb 20.
Article in English | MEDLINE | ID: mdl-28012306

ABSTRACT

The binding interaction between clofarabine, an important anticancer drug and two important carrier proteins found abundantly in human plasma, Human Serum Albumin (HSA) and α-1 acid glycoprotein (AAG) was investigated by spectroscopic and molecular modeling methods. The results obtained from fluorescence quenching experiments demonstrated that the fluorescence intensity of HSA and AAG is quenched by clofarabine and the static mode of fluorescence quenching is operative. UV-vis spectroscopy deciphered the formation of ground state complex between anticancer drug and the two studied proteins. Clofarabine was found to bind at 298K with both AAG and HSA with the binding constant of 8.128×103 and 4.120×103 for AAG and HSA, respectively. There is stronger interaction of clofarabine with AAG as compared to HSA. The Gibbs free energy change was found to be negative for the interaction of clofarabine with AAG and HSA indicating that the binding process is spontaneous. Binding of clofarabine with HSA and AAG induced ordered structures in both proteins and lead to molecular compaction. Clofarabine binds to HSA near to drug site II. Hydrogen bonding and hydrophobic interactions were the main bonding forces between HSA-clofarabine and AAG-clofarabine as revealed by docking results. This study suggests the importance of binding of anticancer drug to AAG spatially in the diseases like cancers where the plasma concentration of AAG increases many folds. Design of drug dosage can be adjusted accordingly to achieve optimal treatment outcome.


Subject(s)
Adenine Nucleotides/analysis , Adenine Nucleotides/metabolism , Arabinonucleosides/analysis , Arabinonucleosides/metabolism , Molecular Docking Simulation/methods , Serum Albumin/analysis , Serum Albumin/metabolism , Adenine Nucleotides/chemistry , Arabinonucleosides/chemistry , Clofarabine , Humans , Protein Binding/physiology , Protein Structure, Secondary , Serum Albumin/chemistry , Spectrophotometry, Ultraviolet/methods
11.
Proc Natl Acad Sci U S A ; 113(15): 4027-32, 2016 Apr 12.
Article in English | MEDLINE | ID: mdl-27035974

ABSTRACT

Deoxycytidine kinase (dCK), a rate-limiting enzyme in the cytosolic deoxyribonucleoside (dN) salvage pathway, is an important therapeutic and positron emission tomography (PET) imaging target in cancer. PET probes for dCK have been developed and are effective in mice but have suboptimal specificity and sensitivity in humans. To identify a more suitable probe for clinical dCK PET imaging, we compared the selectivity of two candidate compounds-[(18)F]Clofarabine; 2-chloro-2'-deoxy-2'-[(18)F]fluoro-9-ß-d-arabinofuranosyl-adenine ([(18)F]CFA) and 2'-deoxy-2'-[(18)F]fluoro-9-ß-d-arabinofuranosyl-guanine ([(18)F]F-AraG)-for dCK and deoxyguanosine kinase (dGK), a dCK-related mitochondrial enzyme. We demonstrate that, in the tracer concentration range used for PET imaging, [(18)F]CFA is primarily a substrate for dCK, with minimal cross-reactivity. In contrast, [(18)F]F-AraG is a better substrate for dGK than for dCK. [(18)F]CFA accumulation in leukemia cells correlated with dCK expression and was abrogated by treatment with a dCK inhibitor. Although [(18)F]CFA uptake was reduced by deoxycytidine (dC) competition, this inhibition required high dC concentrations present in murine, but not human, plasma. Expression of cytidine deaminase, a dC-catabolizing enzyme, in leukemia cells both in cell culture and in mice reduced the competition between dC and [(18)F]CFA, leading to increased dCK-dependent probe accumulation. First-in-human, to our knowledge, [(18)F]CFA PET/CT studies showed probe accumulation in tissues with high dCK expression: e.g., hematopoietic bone marrow and secondary lymphoid organs. The selectivity of [(18)F]CFA for dCK and its favorable biodistribution in humans justify further studies to validate [(18)F]CFA PET as a new cancer biomarker for treatment stratification and monitoring.


Subject(s)
Adenine Nucleotides/chemistry , Arabinonucleosides/chemistry , Biomarkers, Tumor/chemistry , Deoxycytidine Kinase/analysis , Deoxycytidine Kinase/metabolism , Positron-Emission Tomography/methods , Animals , Antineoplastic Agents/chemistry , Cell Line, Tumor , Clofarabine , Contrast Media/chemistry , Deoxycytidine Kinase/antagonists & inhibitors , Humans , Leukemia/enzymology , Mice , Neoplasms/drug therapy , Prodrugs/chemistry , Rats
12.
J Cell Biochem ; 117(5): 1126-35, 2016 May.
Article in English | MEDLINE | ID: mdl-26477689

ABSTRACT

The combination of the gene of purine nucleoside phosphorylase (PNP) from Escherichia coli and fludarabine represents one of the most promising systems in the gene therapy of solid tumors. The use of fludarabine in gene therapy is limited by the lack of an enzyme that is able to efficiently activate this prodrug which, consequently, has to be administered in high doses that cause serious side effects. In an attempt to identify enzymes with a better catalytic efficiency than E. coli PNP towards fludarabine to be used as a guidance on how to improve the activity of the bacterial enzyme, we have selected 5'-deoxy-5'-methylthioadenosine phosphorylase (SsMTAP) and 5'-deoxy-5'-methylthioadenosine phosphorylase II (SsMTAPII), two PNPs isolated from the hyperthermophilic archaeon Sulfolobus solfataricus. Substrate specificity and catalytic efficiency of SsMTAP and SsMTAPII for fludarabine were analyzed by kinetic studies and compared with E. coli PNP. SsMTAP and SsMTAPII share with E. coli PNP a comparable low affinity for the arabinonucleoside but are better catalysts of fludarabine cleavage with k(cat)/K(m) values that are 12.8-fold and 6-fold higher, respectively, than those reported for the bacterial enzyme. A computational analysis of the interactions of fludarabine in the active sites of E. coli PNP, SsMTAP, and SsMTAPII allowed to identify the crucial residues involved in the binding with this substrate, and provided structural information to improve the catalytic efficiency of E. coli PNP by enzyme redesign.


Subject(s)
Archaeal Proteins/metabolism , Escherichia coli Proteins/metabolism , Purine-Nucleoside Phosphorylase/metabolism , Sulfolobus solfataricus/enzymology , Vidarabine/analogs & derivatives , Adenosine/chemistry , Adenosine/metabolism , Arabinonucleosides/chemistry , Arabinonucleosides/metabolism , Archaeal Proteins/chemistry , Binding, Competitive , Biocatalysis , Catalytic Domain , Crystallography, X-Ray , Escherichia coli Proteins/chemistry , Isoenzymes/chemistry , Isoenzymes/metabolism , Kinetics , Models, Molecular , Molecular Structure , Protein Binding , Protein Domains , Purine-Nucleoside Phosphorylase/chemistry , Substrate Specificity , Vidarabine/chemistry , Vidarabine/metabolism
13.
Curr Med Chem ; 22(34): 3881-96, 2015.
Article in English | MEDLINE | ID: mdl-26597061

ABSTRACT

Thiarabine has demonstrated exceptional antitumor activity against numerous human tumor xenografts in mice, being superior to gemcitabine, clofarabine, or cytarabine. Unlike cytarabine, thiarabine demonstrated excellent activity against solid tumor xenografts, suggesting that this agent has the kind of robust activity in animal models that leads to clinical utility. Thiarabine is effective orally (bioavailability of approximately 16%) and with once per day dosing: Two characteristics that distinguish it from cytarabine. Although both the structure and basic mechanism of action of thiarabine are similar to that of cytarabine, there are many quantitative differences in the biochemical pharmacology of these two agents that can explain the superior antitumor activity of thiarabine. Two important attributes are the long retention time of the 5'-triphosphate of thiarabine in tumor cells and its potent inhibition of DNA synthesis. The biochemical pharmacology of thiarabine is also different from that of gemcitabine. Thiarabine has been evaluated in three phase I clinical trials, where it has demonstrated some activity in heavily pretreated patients with hematologic malignancies and solid tumors. Because of its impressive activity against numerous human tumor xenografts in mice, its unique biochemical activity, and encouraging clinical results in phase I clinical trials, we believe thiarabine should continue to be evaluated in the clinic for treatment of hematologic and/or solid tumors. The preclinical results to date (superior in vivo antitumor activity, oral bioavailability, and once per day dosing), suggest that thiarabine could replace cytarabine in the treatment of acute myelogenous leukemia.


Subject(s)
Antineoplastic Agents/chemistry , Arabinonucleosides/chemistry , Animals , Antineoplastic Agents/pharmacology , Antineoplastic Agents/therapeutic use , Arabinonucleosides/pharmacology , Arabinonucleosides/therapeutic use , Cell Survival/drug effects , Disease Models, Animal , Drug Resistance, Bacterial , Humans , Neoplasms/drug therapy , Neoplasms/metabolism , Neoplasms/pathology , Nucleosides/chemistry , Nucleosides/pharmacology , Nucleosides/therapeutic use , Transplantation, Heterologous
14.
Reprod Domest Anim ; 50(3): 423-30, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25779206

ABSTRACT

Tetraspanin CD9 is one of the egg membrane proteins known to be essential in fertilization process. The presence and localization of CD9 molecule in spermatozoa and its possible function in reproduction are still unclear. In our study, we describe the localization of CD9 on bull spermatozoa. In the immunofluorescence assay, the positive signal has been observed in the high proportion of sperm cells as a fine grains either on the apical part or through the entire anterior region of sperm head. CD9 recognized by monoclonal antibody IVA-50 was detected on freshly ejaculated (83.4 ± 3.7%) and frozen-thawed (84.3 ± 2.3%) sperm. The same reaction pattern was observed on sperm capacitated for 1 h, 2 h, 3 h and 4 h (83.6 ± 2.0%; 84.0 ± 1.5%; 85.7 ± 0.8%; 77.5 ± 10.8%). The presence of CD9 exclusively on plasma membrane of the bovine sperm has been detected by Western blot analysis of the protein fractions after the discontinuous sucrose gradient fractionation of the bull sperm. Moreover, probable role of the sperm CD9 molecule in fertilization process of cattle has been suggested as sperm treatment with anti-CD9 antibody significantly reduced (by 25%, p ≤ 0.001) the number of fertilized oocytes compared to control group in fertilization assay in vitro.


Subject(s)
Protein Transport/physiology , Sperm-Ovum Interactions/physiology , Spermatozoa/metabolism , Tetraspanin 29/metabolism , Adolescent , Animals , Antibodies , Arabinonucleosides/chemistry , Cattle , Chlortetracycline/chemistry , Fluorescent Antibody Technique, Indirect , Humans , Male , Oocytes/physiology , Sperm Capacitation/physiology , Spermatozoa/cytology , Staining and Labeling , Tetraspanin 29/genetics
15.
Antimicrob Agents Chemother ; 59(1): 186-92, 2015 Jan.
Article in English | MEDLINE | ID: mdl-25331707

ABSTRACT

The development of deoxynucleoside triphosphate (dNTP)-based drugs requires a quantitative understanding of any inhibition, activation, or hydrolysis by off-target cellular enzymes. SAMHD1 is a regulatory dNTP-triphosphohydrolase that inhibits HIV-1 replication in human myeloid cells. We describe here an enzyme-coupled assay for quantifying the activation, inhibition, and hydrolysis of dNTPs, nucleotide analogues, and nucleotide analogue inhibitors by triphosphohydrolase enzymes. The assay facilitates mechanistic studies of triphosphohydrolase enzymes and the quantification of off-target effects of nucleotide-based antiviral and chemotherapeutic agents.


Subject(s)
Acid Anhydride Hydrolases/analysis , Biological Assay/methods , Drug Evaluation, Preclinical/methods , Monomeric GTP-Binding Proteins/analysis , Monomeric GTP-Binding Proteins/metabolism , Acid Anhydride Hydrolases/genetics , Acid Anhydride Hydrolases/metabolism , Acyclovir/chemistry , Acyclovir/metabolism , Acyclovir/pharmacology , Adenine Nucleotides/chemistry , Adenine Nucleotides/pharmacology , Antiviral Agents/chemistry , Antiviral Agents/metabolism , Antiviral Agents/pharmacology , Arabinonucleosides/chemistry , Arabinonucleosides/pharmacology , Catalysis/drug effects , Clofarabine , Deoxyribonucleotides/chemistry , Deoxyribonucleotides/metabolism , Dose-Response Relationship, Drug , Ganciclovir/chemistry , Ganciclovir/pharmacology , HIV-1 , Hydrolysis , SAM Domain and HD Domain-Containing Protein 1
16.
J Org Chem ; 79(23): 11534-40, 2014 Dec 05.
Article in English | MEDLINE | ID: mdl-25375974

ABSTRACT

The formation of new nucleic acid motifs by using double-headed nucleotides is reported. Modified phosphoramidites carrying additional thymine or adenine attached to the 2'-position of arabinouridine through a methylene linker are conveniently prepared and incorporated into oligonucleotides to obtain the modified nucleotide monomers (a)U(T) and (a)U(A), respectively. The extension of a DNA double helix by one or two additional A:T base pairs is achieved by placing these modified monomers in the opposite strands in a so-called (+1)-zipper arrangement. Hence, 12 basepairs can be presented in an 11-mer or even a 10-mer duplex. The modified nucleotide monomers also behave as dinucleotides when base-paired with two complementary nucleotides from the opposite strand. A new nucleic acid motif is introduced when two (a)U(A) monomers recognize each other in the center of a duplex.


Subject(s)
Arabinonucleosides/chemistry , Arabinonucleosides/chemical synthesis , DNA/chemistry , Nucleotides/chemistry , Nucleotides/chemical synthesis , Base Pairing , Nucleic Acid Conformation , Nucleic Acid Hybridization
17.
Chemistry ; 20(47): 15473-81, 2014 Nov 17.
Article in English | MEDLINE | ID: mdl-25262950

ABSTRACT

Structurally modified nucleosides are central players in the field of nucleic acid chemistry. Adenine-thymine (AT) pyrimido[4,5-d]pyrimidine furanosyl and pyranosyl arabinonucleosides have been synthesized for the first time. Single-crystal X-ray diffraction analysis reveals novel base pairs that, in synergy with the sugar residues, direct the emergence of distinct networks containing channels and cavities. The microscopic noncovalent connections can be translated into macroscopic levels in which robust organogels are formed by the furanoside but not the pyranoside. The influences of the sugars are also displayed by the different shaped superstructures of the free nucleosides in solution. The readout of the information in the base moiety is therefore tailored by the sugar configuration, and the interplays exert subtle effects on the structures, from solid to gel and to the solution state. The potential for forming these appealing base pairs and higher structures enables these intriguing nucleosides to serve as unique building blocks in various areas or to construct innovative nucleic acid structures.


Subject(s)
Adenine/chemistry , Arabinonucleosides/chemistry , Thymine/chemistry , Adenine/metabolism , Arabinonucleosides/chemical synthesis , Arabinonucleosides/metabolism , Base Pairing , Crystallography, X-Ray , Molecular Conformation
18.
Article in English | MEDLINE | ID: mdl-24820973

ABSTRACT

A method for quantification of fludarabine (FDB) and clofarabine (CFB) in human plasma was developed with an API5000 LC-MS/MS system. FDB and CFB were extracted from EDTA plasma samples by protein precipitation with trichloroacetic acid. Briefly, 50 µL plasma sample was mixed with 25 µL internal standard (50 ng/mL aqueous 2-Cl-adensosine) and 25 µL 20% trichloroacetic acid, centrifuged at 25,000 × g (20,000 rpm) for 3 min, and then transfered to an autosampler vial. The extracted sample was injected onto an Eclipse extend C18 column (2.1 mm×150 mm, 5 µm) and eluted with 1mM NH4OH (pH 9.6) - acetonitrile in a gradient mode. Electrospray ionization in positive mode (ESI(+)) and multiple reaction monitoring (MRM) were used, and ion pairs 286/134 for FDB, 304/170 for CFB and 302/134 for the internal standard were selected for quantification. The retention times were typically 3.72 min for FDB, 4.34 min for the internal standard, 4.79 min for CFB. Total run time was 10 min per sample. Calibration range was 0.5-80 ng/mL for CFB and 2-800 ng/mL for FDB. The method was applied to a clinical pharmacokinetic study in pediatric patients.


Subject(s)
Adenine Nucleotides/blood , Arabinonucleosides/blood , Chromatography, Liquid/methods , Tandem Mass Spectrometry/methods , Vidarabine/analogs & derivatives , Adenine Nucleotides/chemistry , Adenine Nucleotides/pharmacokinetics , Arabinonucleosides/chemistry , Arabinonucleosides/pharmacokinetics , Clofarabine , Humans , Linear Models , Reproducibility of Results , Sensitivity and Specificity , Spectrometry, Mass, Electrospray Ionization/methods , Vidarabine/blood , Vidarabine/chemistry , Vidarabine/pharmacokinetics
19.
Biol Pharm Bull ; 37(5): 802-7, 2014.
Article in English | MEDLINE | ID: mdl-24790002

ABSTRACT

Sapacitabine (CS-682 or CYC682; 1-[2-C-cyano-2-deoxy-ß-D-arabino-pentfuranosyl]N4-palmitoyl cytosine), a novel antitumor 2'-deoxycytidine analogue, shows a marked reduction in the water solubility because of the fatty acid side chain on the N4 group of the cytosine moiety. Poor water solubility is one of the important reasons why sapacitabine does not exert maximum antitumor activity. Therefore, we attempted to improve the water solubility of sapacitabine using a novel surfactant, Soluplus®, which consisted of a polyvinyl caprolactam-polyvinyl acetate-polyethylene glycol graft copolymer. In this study, we examined whether Soluplus® increased the water solubility and an antitumor activity of sapacitabine. The cytotoxicity of Soluplus® alone was lower than that of Tween 80 and Kolliphor® D-α-tocopherylpolyethylene glycol 1000 succinate (TPGS). The water solubility and the chemosensitivity of sapacitabine against several tumor cell lines to sapacitabine markedly increased upon using Soluplus®. In addition, the potential of Soluplus® including sapacitabine in increasing the antitumor activity was compared with sapacitabine alone in vivo. Although the total dose in the experimental period was considerably lower than the effective dose of sapacitabine alone, the life span of mice treated with sapacitabine containing 40 mg/mL Soluplus® increased by 150%. If Soluplus® was used as the solubilizing agent in clinical trials of sapacitabine, a low administration dose was appeared to require, and thus side effects might be prevented.


Subject(s)
Antineoplastic Agents/chemistry , Antineoplastic Agents/pharmacology , Arabinonucleosides/chemistry , Arabinonucleosides/pharmacology , Cytosine/analogs & derivatives , Polyethylene Glycols/pharmacology , Polyvinyls/pharmacology , Surface-Active Agents/pharmacology , Animals , Cell Line, Tumor , Cytosine/chemistry , Cytosine/pharmacology , Dose-Response Relationship, Drug , Mice , Polyethylene Glycols/chemistry , Polysorbates/chemistry , Polysorbates/pharmacology , Polyvinyls/chemistry , Solubility/drug effects , Surface-Active Agents/chemistry , Survival Analysis , Vitamin E/analogs & derivatives , Vitamin E/chemistry , Vitamin E/pharmacology
20.
J Nat Prod ; 77(2): 227-33, 2014 Feb 28.
Article in English | MEDLINE | ID: mdl-24533857

ABSTRACT

Four new undecose nucleosides (herbicidin congeners), three known herbicidins, and 9-(ß-d-arabinofuranosyl)hypoxanthine (Ara-H) were isolated from the organic extract of a fermentation culture of Streptomyces sp. L-9-10 using proton NMR-guided fractionation. Their structures were elucidated on the basis of comprehensive 1D and 2D NMR and mass spectrometry analyses. These structures included 2'-O-demethylherbicidin F (1), 9'-deoxy-8',8'-dihydroxyherbicidin B (2), 9'-deoxy-8'-oxoherbicidin B (2a), and the 8'-epimer of herbicidin B (3). This is the first detailed assignment of proton and carbon chemical shifts for herbicidins A, B, and F. The isolated compounds were evaluated for cancer chemopreventive potential based on inhibition of tumor necrosis factor alpha (TNF-α)-induced nuclear factor-kappa B (NF-κB) activity.


Subject(s)
Purine Nucleosides/isolation & purification , Streptomyces/chemistry , Arabinonucleosides/chemistry , Arabinonucleosides/isolation & purification , Humans , Molecular Structure , NF-kappa B , Nuclear Magnetic Resonance, Biomolecular , Purine Nucleosides/chemistry , Purine Nucleosides/pharmacology , Tumor Necrosis Factor-alpha
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