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1.
Nitric Oxide ; 108: 12-19, 2021 03 01.
Article in English | MEDLINE | ID: mdl-33338599

ABSTRACT

Despite the saturating concentrations of intracellular l-arginine, nitric oxide (NO) production in endothelial cells (EC) can be stimulated by exogenous arginine. This phenomenon, termed the "arginine paradox" led to the discovery of an arginine recycling pathway in which l-citrulline is recycled to l-arginine by utilizing two important urea cycle enzymes argininosuccinate synthetase (ASS) and argininosuccinate lyase (ASL). Prior work has shown that ASL is present in a NO synthetic complex containing hsp90 and endothelial NO synthase (eNOS). However, it is unclear whether hsp90 forms functional complexes with ASS and ASL and if it is involved regulating their activity. Thus, elucidating the role of hsp90 in the arginine recycling pathway was the goal of this study. Our data indicate that both ASS and ASL are chaperoned by hsp90. Inhibiting hsp90 activity with geldanamycin (GA), decreased the activity of both ASS and ASL and decreased cellular l-arginine levels in bovine aortic endothelial cells (BAEC). hsp90 inhibition led to a time-dependent decrease in ASS and ASL protein, despite no changes in mRNA levels. We further linked this protein loss to a proteasome dependent degradation of ASS and ASL via the E3 ubiquitin ligase, C-terminus of Hsc70-interacting protein (CHIP) and the heat shock protein, hsp70. Transient over-expression of CHIP was sufficient to stimulate ASS and ASL degradation while the over-expression of CHIP mutant proteins identified both TPR- and U-box-domain as essential for ASS and ASL degradation. This study provides a novel insight into the molecular regulation l-arginine recycling in EC and implicates the proteasome pathway as a possible therapeutic target to stimulate NO signaling.


Subject(s)
Arginine/metabolism , HSP90 Heat-Shock Proteins/metabolism , Proteasome Endopeptidase Complex/metabolism , Ubiquitin/metabolism , Animals , Argininosuccinate Lyase/chemistry , Argininosuccinate Lyase/metabolism , Argininosuccinate Synthase/chemistry , Argininosuccinate Synthase/metabolism , Cattle , Endothelial Cells , Proteolysis , Ubiquitin-Protein Ligases/metabolism , Ubiquitination
2.
Genomics ; 112(3): 2247-2260, 2020 05.
Article in English | MEDLINE | ID: mdl-31884157

ABSTRACT

The air-breathing magur catfish (Clarias magur) is a potential ureogenic teleost because of its functional ornithine-urea cycle (OUC), unlike typical freshwater teleosts. The ability to convert ammonia waste to urea was a significant step towards land-based life forms from aquatic predecessors. Here we investigated the molecular characterization of some OUC genes and the molecular basis of stimulation of ureogenesis via the OUC in magur catfish. The deduced amino acid sequences from the complete cDNA coding sequences of ornithine transcarbamyolase, argininosuccinate synthase, and argininosuccinate lyase indicated that phylogenetically magur catfish is very close to other ureogenic catfishes. Ammonia exposure led to a significant induction of major OUC genes and the gene products in hepatic and in certain non-hepatic tissues of magur catfish. Hence, it is reasonable to assume that the induction of ureogenesis in magur catfish under hyper-ammonia stress is mediated through the activation of OUC genes as an adaptational strategy.


Subject(s)
Argininosuccinate Lyase/metabolism , Argininosuccinate Synthase/metabolism , Catfishes/metabolism , Fish Proteins/metabolism , Ornithine Carbamoyltransferase/metabolism , Ornithine/metabolism , Urea/metabolism , Ammonia/toxicity , Animals , Argininosuccinate Lyase/biosynthesis , Argininosuccinate Lyase/chemistry , Argininosuccinate Lyase/genetics , Argininosuccinate Synthase/biosynthesis , Argininosuccinate Synthase/chemistry , Argininosuccinate Synthase/genetics , Catfishes/genetics , Fish Proteins/biosynthesis , Fish Proteins/chemistry , Fish Proteins/genetics , Ornithine Carbamoyltransferase/biosynthesis , Ornithine Carbamoyltransferase/chemistry , Ornithine Carbamoyltransferase/genetics , Phylogeny , RNA, Messenger/metabolism , Sequence Alignment , Sequence Analysis, Protein , Tissue Distribution
3.
Zhonghua Yi Xue Yi Chuan Xue Za Zhi ; 35(3): 429-433, 2018 Jun 10.
Article in Chinese | MEDLINE | ID: mdl-29896748

ABSTRACT

OBJECTIVE: To carry out rapid genetic diagnosis for a child affected with citrullinemia type Ⅰ. METHODS: Peripheral venous blood samples were obtained from the two-day-old child and his parents as well as 100 healthy controls. Serum ammonia and citrulline was determined by biochemical test and tandem mass spectrometry. Sixteen pairs of primers were designed for high-resolution melting (HRM) analysis of all exons and adjacent intronic sequences of the ASS1 gene in the proband, parents and healthy controls. Suspected mutations were confirmed by DNA sequencing, while the mRNA transcripts of the ASS1 gene were determined by reverse transcription (RT)-PCR. Functional impact of the mutation sites was predicted with PolyPhen-2 and SIFT Blink software. RESULTS: Blood ammonia and citrulline of the proband have respectively reached 286 µmol/L and 487.69 µmol/L, which far superseded the normal values. HRM analysis and DNA sequencing have identified in the child a homozygous c.380G>A (p.R127Q) mutation in exon 6 of the ASS1 gene, in addition with a homozygous IVS8+60G>A substitution in intron 8, while his parents were heterozygous carriers for both mutations. RT-PCR assay indicated that the IVS8+60G>A mutation did not result in abnormal splicing of the ASS1 gene transcripts. Bioinformatic analysis suggested that the site for p.R127Q was conserved among 45 species of vertebrates and may play a crucial role in citrulline metabolism. CONCLUSION: The severe urea cycle disorder in the proband was probably due to the compound homozygous R127Q and IVS8+60G>A mutations of the ASS1 gene.


Subject(s)
Argininosuccinate Synthase/genetics , Citrullinemia/enzymology , Citrullinemia/genetics , Mutation , Argininosuccinate Synthase/chemistry , Base Sequence , Citrulline/blood , Citrullinemia/blood , Exons , Heterozygote , Homozygote , Humans , Infant, Newborn , Introns , RNA Splicing , Transition Temperature
4.
Hum Mutat ; 38(5): 471-484, 2017 05.
Article in English | MEDLINE | ID: mdl-28111830

ABSTRACT

Citrullinemia type 1 is an autosomal recessive urea cycle disorder caused by defects in the argininosuccinate synthetase (ASS) enzyme due to mutations in ASS1 gene. An impairment of ASS function can lead to a wide spectrum of phenotypes, from life-threatening neonatal hyperammonemia to a later onset with mild symptoms, and even some asymptomatic patients exhibiting an only biochemical phenotype. The disease is panethnic. In this update, we report 137 mutations (64 of which are novel), consisting of 89 missense mutations, 19 nonsense mutations, 17 mutations that affect splicing, and 12 deletions. The change p.Gly390Arg is by far the most common mutation and is widely spread throughout the world. Other frequent mutations (p.Arg157His, p.Trp179Arg, p.Val263Met, p.Arg304Trp, p.Gly324Ser, p.Gly362Val, and p.Arg363Trp), each found in at least 12 independent families, are mainly carried by patients from the Indian subcontinent, Turkey, Germany, and Japan. To better understand the disease, we collected clinical data of >360 patients, including all published information available. This information is related to the patients' genetic background, the conservation of the mutated residues and a structural rationalization of the effect of the most frequent mutations. In addition, we review ASS regulation, animal models, diagnostic strategies, newborn screening, and treatment options.


Subject(s)
Argininosuccinate Synthase/genetics , Citrullinemia/diagnosis , Citrullinemia/genetics , Mutation , Alleles , Amino Acid Sequence , Animals , Argininosuccinate Synthase/chemistry , Argininosuccinate Synthase/metabolism , Citrullinemia/epidemiology , Citrullinemia/therapy , Disease Models, Animal , Enzyme Activation , Genetic Association Studies , Genotype , Geography, Medical , Humans , Models, Molecular , Phenotype , Position-Specific Scoring Matrices , Prenatal Diagnosis , Protein Conformation , Severity of Illness Index , Structure-Activity Relationship
5.
Clin Chim Acta ; 438: 323-9, 2015 Jan 01.
Article in English | MEDLINE | ID: mdl-25179242

ABSTRACT

BACKGROUND: Classical citrullinemia (CTLN1) is an inborn error of the urea cycle caused by reduced/abolished activity of argininosuccinate synthetase due to mutations in the ASS1 gene. To determine the pathogenicity of novel variants detected in patients is often a huge challenge in molecular diagnosis. The purpose of our study was to characterize novel ASS1 gene mutations identified in CTLN1 patients. METHODS: Exon trapping assay with pSPL3 was used to confirm splice aberrations while bioinformatics structural analysis predicted the possible effects of missense mutations. RESULTS: Novel donor site (c.174+1G>A) and missense (p.V141G) mutations were detected in a patient exhibiting a biochemical phenotype only. The splice mutation provoked exon skipping hence the truncated product. The mutation p.V141G, is predicted to disturb a hydrophobic pocket in the ATP binding domain in the ASS. Both mutations are predicted to lower binding of ATP. The second patient presented with early onset neonatal citrullinemia marked by an elevated biochemical profile and a clinical phenotype. Analysis revealed a donor site (c.773+1G>A) mutation leading to both exon skipping and intron retention. Subsequent introduction of premature stop codons would result in severely truncated products likely to be degraded. A previously reported R265C is predicted to distort the citrulline binding site. CONCLUSIONS: Three novel mutations are reported in this study. They expand the spectrum of genetic pathology underlying CTLN1. Overall this study provides new insight of CTLN1 and illustrates a comprehensive protocol investigating inborn errors of metabolism at the molecular level.


Subject(s)
Argininosuccinate Synthase/genetics , Citrullinemia/genetics , Mutation , RNA Splicing , Adenosine Triphosphate/chemistry , Adenosine Triphosphate/metabolism , Amino Acid Sequence , Argininosuccinate Synthase/chemistry , Argininosuccinate Synthase/metabolism , Base Sequence , Citrulline/chemistry , Citrulline/metabolism , Citrullinemia/diagnosis , Citrullinemia/enzymology , Citrullinemia/pathology , Exons , Female , Humans , Infant , Introns , Male , Models, Molecular , Molecular Sequence Data , Pedigree , Protein Binding
6.
Zhonghua Yi Xue Yi Chuan Xue Za Zhi ; 28(6): 630-3, 2011 Dec.
Article in Chinese | MEDLINE | ID: mdl-22161093

ABSTRACT

OBJECTIVE: To investigate potential mutation of the ASS1 gene in a male infant with acute citrullinemia type I. METHODS: Genomic DNA was prepared from peripheral blood samples of the family members. Mutation analysis of the 14 ASS1 exons was carried out by PCR and direct DNA sequencing. RESULTS: A homozygous missense mutation of c.970G>A located in exon 13, which results in p.G324S, was identified in the child. Sequencing of the parents showed a heterozygous status for the same mutation. CONCLUSION: A missense mutation of c.970G>A in the ASS1 gene is responsible for the pathogenesis of the disease in the infant.


Subject(s)
Argininosuccinate Synthase/genetics , Citrullinemia/genetics , Mutation, Missense , Amino Acid Sequence , Amino Acid Substitution , Argininosuccinate Synthase/chemistry , Base Sequence , Gene Order , Humans , Infant , Male , Models, Molecular , Molecular Sequence Data , Protein Conformation , Sequence Alignment , Sequence Analysis, DNA
7.
Biochem Biophys Res Commun ; 385(4): 512-7, 2009 Aug 07.
Article in English | MEDLINE | ID: mdl-19477162

ABSTRACT

N(2)-(2-Carboxyethyl)arginine synthase (CEAS), an unusual thiamin diphosphate (ThDP)-dependent enzyme, catalyses the committed step in the biosynthesis of the b-lactamase inhibitor clavulanic acid in Streptomyces clavuligerus. Crystal structures of tetrameric CEAS-ThDP in complex with the substrate analogues 5-guanidinovaleric acid (GVA) and tartrate, and a structure reflecting a possible enol(ate)-ThDP reaction intermediate are described. The structures suggest overlapping binding sites for the substrates D-glyceraldehyde-3-phosphate (D-G3P) and L-arginine, and are consistent with the proposed CEAS mechanism in which D-G3P binds at the active site and reacts to form an alpha,beta-unsaturated intermediate,which subsequently undergoes (1,4)-Michael addition with the alpha-amino group of L-arginine. Additional solution studies are presented which probe the amino acid substrate tolerance of CEAS, providing further insight into the L-arginine binding site. These findings may facilitate the engineering of CEAS towards the synthesis of alternative beta-amino acid products.


Subject(s)
Argininosuccinate Lyase/chemistry , Argininosuccinate Synthase/chemistry , Multienzyme Complexes/chemistry , Streptomyces/enzymology , Arginine/biosynthesis , Arginine/chemistry , Arginine/metabolism , Argininosuccinate Lyase/genetics , Argininosuccinate Lyase/metabolism , Argininosuccinate Synthase/genetics , Argininosuccinate Synthase/metabolism , Binding Sites , Crystallography, X-Ray , Multienzyme Complexes/genetics , Multienzyme Complexes/metabolism , Protein Conformation , Protein Engineering , Tartrates/chemistry , Tartrates/metabolism , Valerates/chemistry , Valerates/metabolism
8.
Acta Crystallogr D Biol Crystallogr ; 64(Pt 3): 279-86, 2008 Mar.
Article in English | MEDLINE | ID: mdl-18323623

ABSTRACT

Argininosuccinate synthetase catalyzes the transformation of citrulline and aspartate into argininosuccinate and pyrophosphate using the hydrolysis of ATP to AMP and pyrophosphate. This enzymatic process constitutes the rate-limiting step in both the urea and arginine-citrulline cycles. Previous studies have investigated the crystal structures of argininosuccinate synthetase from bacterial species. In this work, the first crystal structure of human argininosuccinate synthetase in complex with the substrates citrulline and aspartate is presented. The human enzyme is compared with structures of argininosuccinate synthetase from bacteria. In addition, the structure also provides new insights into the function of the numerous clinical mutations identified in patients with type I citrullinaemia (also known as classic citrullinaemia).


Subject(s)
Argininosuccinate Synthase/chemistry , Models, Molecular , Adenosine Triphosphate/chemistry , Adenosine Triphosphate/metabolism , Amino Acid Sequence , Argininosuccinate Synthase/genetics , Binding Sites , Crystallography, X-Ray , Humans , Molecular Sequence Data , Protein Conformation , Sequence Analysis, Protein , Substrate Specificity
9.
Proteins ; 71(2): 670-83, 2008 May 01.
Article in English | MEDLINE | ID: mdl-17975834

ABSTRACT

Experimentally determined protein tertiary structures are rapidly accumulating in a database, partly due to the structural genomics projects. Included are proteins of unknown function, whose function has not been investigated by experiments and was not able to be predicted by conventional sequence-based search. Those uncharacterized protein structures highlight the urgent need of computational methods for annotating proteins from tertiary structures, which include function annotation methods through characterizing protein local surfaces. Toward structure-based protein annotation, we have developed VisGrid algorithm that uses the visibility criterion to characterize local geometric features of protein surfaces. Unlike existing methods, which only concerns identifying pockets that could be potential ligand-binding sites in proteins, VisGrid is also aimed to identify large protrusions, hollows, and flat regions, which can characterize geometric features of a protein structure. The visibility used in VisGrid is defined as the fraction of visible directions from a target position on a protein surface. A pocket or a hollow is recognized as a cluster of positions with a small visibility. A large protrusion in a protein structure is recognized as a pocket in the negative image of the structure. VisGrid correctly identified 95.0% of ligand-binding sites as one of the three largest pockets in 5616 benchmark proteins. To examine how natural flexibility of proteins affects pocket identification, VisGrid was tested on distorted structures by molecular dynamics simulation. Sensitivity decreased approximately 20% for structures of a root mean square deviation of 2.0 A to the original crystal structure, but specificity was not much affected. Because of its intuitiveness and simplicity, the visibility criterion will lay the foundation for characterization and function annotation of local shape of proteins.


Subject(s)
Protein Structure, Tertiary , 3-alpha-Hydroxysteroid Dehydrogenase (B-Specific)/chemistry , Acetylcholinesterase/chemistry , Algorithms , Argininosuccinate Synthase/chemistry , Binding Sites , Computer Simulation , Elapid Venoms/chemistry , HSP90 Heat-Shock Proteins/chemistry , Ligands , Models, Molecular , Oxidoreductases/chemistry , Phosphate-Binding Proteins/chemistry , Phospholipid Transfer Proteins/chemistry , Sensitivity and Specificity , Tetrahydrofolate Dehydrogenase/chemistry
10.
Mycol Res ; 111(Pt 4): 493-502, 2007 Apr.
Article in English | MEDLINE | ID: mdl-17512708

ABSTRACT

Accumulation of high quantities of urea in fruiting bodies is a known feature of larger basidiomycetes. Argininosuccinate synthetase (ASS) and argininosuccinate lyase (ASL) are two ornithine cycle enzymes catalysing the last two steps in the arginine biosynthetic pathway. Arginine is the main precursor for urea formation. In this work the nucleotide sequences of the genes and corresponding cDNAs encoding argininosuccinate synthetase (ass) and argininosuccinate lyase (asl) from Agaricus bisporus were determined. Eight and six introns were present in the ass and asl gene, respectively. The location of four introns in the asl gene were conserved among vertebrate asl genes. Deduced amino acid sequences, representing the first homobasidiomycete ASS and ASL protein sequences, were analysed and compared with their counterparts in other organisms. The ass ORF encoded for a protein of 425 amino acids with a calculated molecular mass of 47266Da. An alignment with ASS proteins from other organisms revealed high similarity with fungal and mammalian ASS proteins, 61-63% and 51-55% identity, respectively. The asl open reading frame (ORF) encoded a protein of 464 amino acids with an calculated mass of 52337Da and similar to ASS shared the highest similarity with fungal ASL proteins, 59-60% identity. Northern analyses of ass and asl during fruiting body formation and post-harvest development revealed that expression was significantly up-regulated from developmental stage 3 on for all the tissues studied. The expression reached a maximum at the later stages of fruiting body growth, stages 6 and 7. Both ass and asl genes were up-regulated within 3h after harvest showing that the induction mechanism is very sensitive to the harvest event and emphasizes the importance of the arginine biosynthetic pathway/ornithine cycle in post-harvest physiology.


Subject(s)
Agaricus/enzymology , Argininosuccinate Lyase/genetics , Argininosuccinate Synthase/genetics , Fungal Proteins/genetics , Ornithine/metabolism , Agaricus/growth & development , Amino Acid Sequence , Argininosuccinate Lyase/metabolism , Argininosuccinate Synthase/chemistry , Argininosuccinate Synthase/metabolism , Base Sequence , Fungal Proteins/metabolism , Gene Expression Regulation, Fungal , Genes, Fungal , Molecular Sequence Data , Phylogeny , Promoter Regions, Genetic/genetics , Sequence Alignment , Sequence Homology, Amino Acid , Up-Regulation
11.
J Biol Chem ; 279(7): 5685-92, 2004 Feb 13.
Article in English | MEDLINE | ID: mdl-14623876

ABSTRACT

The initial step in the biosynthesis of the clinically important beta-lactamase inhibitor clavulanic acid involves condensation of two primary metabolites, D-glyceraldehyde 3-phosphate and L-arginine, to give N2-(2-carboxyethyl)arginine, a beta-amino acid. This unusual N-C bond forming reaction is catalyzed by the thiamin diphosphate (ThP2)-dependent enzyme N2-(2-carboxyethyl)arginine synthase. Here we report the crystal structure of N2-(2-carboxyethyl)arginine synthase, complexed with ThP2 and Mg2+, to 2.35-A resolution. The structure was solved in two space groups, P2(1)2(1)2(1) and P2(1)2(1)2. In both, the enzyme is observed in a tetrameric form, composed of a dimer of two more tightly associated dimers, consistent with both mass spectrometric and gel filtration chromatography studies. Both ThP2 and Mg2+ cofactors are present at the active site, with ThP2 in a "V" conformation as in related enzymes. A sulfate anion is observed in the active site of the enzyme in a location proposed as a binding site for the phosphate group of the d-glyceraldehyde 3-phosphate substrate. The mechanistic implications of the active site arrangement are discussed, including the potential role of the aminopyrimidine ring of the ThP2. The structure will form a basis for future mechanistic and structural studies, as well as engineering aimed at production of alternative beta-amino acids.


Subject(s)
Argininosuccinate Lyase/chemistry , Argininosuccinate Synthase/chemistry , Clavulanic Acid/chemistry , Multienzyme Complexes/chemistry , Amino Acids/chemistry , Binding Sites , Chromatography, Gel , Clavulanic Acid/biosynthesis , Crystallography, X-Ray , Dimerization , Magnesium/chemistry , Mass Spectrometry , Models, Chemical , Models, Molecular , Streptomyces/enzymology
12.
J Biol Chem ; 278(25): 22964-71, 2003 Jun 20.
Article in English | MEDLINE | ID: mdl-12684518

ABSTRACT

Argininosuccinate synthetase reversibly catalyzes the ATP-dependent condensation of a citrulline with an aspartate to give argininosuccinate. The structures of the enzyme from Thermus thermophilus HB8 complexed with intact ATP and substrates (citrulline and aspartate) and with AMP and product (argininosuccinate) have been determined at 2.1- and 2.0-A resolution, respectively. The enzyme does not show the ATP-induced domain rotation observed in the enzyme from Escherichia coli. In the enzyme-substrate complex, the reaction sites of ATP and the bound substrates are adjacent and are sufficiently close for the reaction to proceed without the large conformational change at the domain level. The mobility of the triphosphate group in ATP and the side chain of citrulline play an important role in the catalytic action. The protonated amino group of the bound aspartate interacts with the alpha-phosphate of ATP and the ureido group of citrulline, thus stimulating the adenylation of citrulline. The enzyme-product complex explains how the citrullyl-AMP intermediate is bound to the active site. The stereochemistry of the catalysis of the enzyme is clarified on the basis of the structures of tAsS (argininosuccinate synthetase from T. thermophilus HB8) complexes.


Subject(s)
Adenosine Monophosphate/metabolism , Adenosine Triphosphate/metabolism , Argininosuccinate Synthase/chemistry , Argininosuccinate Synthase/metabolism , Binding Sites , Cloning, Molecular , Crystallography, X-Ray , Escherichia coli/enzymology , Kinetics , Models, Molecular , Protein Structure, Secondary , Substrate Specificity , Thermus thermophilus/enzymology
13.
Acta Crystallogr D Biol Crystallogr ; 58(Pt 12): 2096-101, 2002 Dec.
Article in English | MEDLINE | ID: mdl-12454470

ABSTRACT

The structure of Escherichia coli argininosuccinate synthetase (EAS) has been determined using S-SAD, Se-SAD and S/Se-SIRAS data measured with Cu Kalpha radiation. EAS contains 16 methionines and three cysteines in 455 amino acids. At a wavelength of 1.54 A (Cu Kalpha), the native (S-Met) and derivative (Se-Met) proteins yield anomalous signals of approximately 0.86 and 1.6%, respectively. Highly redundant data were measured to 2.0 A from native and derivative EAS crystals. All three structure determinations were carried out in a highly automated manner using SnB and SOLVE/RESOLVE. Despite the minute Bijvoet differences at 1.54 A, the signal was sufficient to determine the heavy-atom substructure and produce high-quality electron-density maps in all three cases. These maps were readily interpretable by the RESOLVE automated building algorithm, which modeled greater than 75% of all three structures. The success of these methods has profound implications for crystallographers experiencing difficulty with heavy-atom incorporation or with limited access to a synchrotron source.


Subject(s)
Argininosuccinate Synthase/chemistry , Escherichia coli/enzymology , Argininosuccinate Synthase/isolation & purification , Protein Conformation , Synchrotrons
14.
Hum Genet ; 110(4): 327-33, 2002 Apr.
Article in English | MEDLINE | ID: mdl-11941481

ABSTRACT

Deficiency of argininosuccinate synthetase (ASS) causes citrullinemia, an autosomal recessive inherited defect of the urea cycle. Most patients described so far have presented with the classical form of the disease. There are also patients with a mild form of citrullinemia in whom the exact molecular basis and clinical relevance are uncertain. Mutations in the human ASS gene have not yet been described in mildly affected or asymptomatic patients with citrullinemia. The genomic sequence of the human ASS gene is not precisely known making mutation analysis difficult. Here, the entire genomic DNA sequence and mutations in the ASS gene of patients with the classical and mild form of the disease are described. The mutations c.1168G-->A (G390R) and IVS13+5 G-->A and the novel mutation c.323G-->T (R108L) have been found to be associated with classical citrullinemia, whereas the novel mutations c.535T-->G (W179R), and c.1085G-->T (G362V) have been detected on alleles of the mildly affected patients. Thus, mutations found in the human ASS gene of asymptomatic children with biochemical abnormalities and in some cases enzymatically proven citrullinemia have allowed us to classify these cases as ASS-deficient patients. The elucidation of the structure of the human ASS gene has made possible the use of intronic primers for molecular analysis of patients with mild disease and the classical form, and provides another option for prenatal diagnostics in affected families with the severe type.


Subject(s)
Argininosuccinate Synthase/genetics , Citrullinemia/diagnosis , Amino Acid Sequence , Argininosuccinate Synthase/chemistry , Base Sequence , Citrullinemia/genetics , DNA Primers , DNA, Complementary , Humans , Molecular Sequence Data , Sequence Homology, Amino Acid
15.
J Biol Chem ; 277(18): 15890-6, 2002 May 03.
Article in English | MEDLINE | ID: mdl-11844799

ABSTRACT

Argininosuccinate synthetase catalyzes the ATP-dependent condensation of a citrulline with an aspartate to give argininosuccinate. The three-dimensional structures of the enzyme from Thermus thermophilus HB8 in its free form, complexed with intact ATP, and complexed with an ATP analogue (adenylyl imidodiphosphate) and substrate analogues (arginine and succinate) have been determined at 2.3-, 2.3-, and 1.95-A resolution, respectively. The structure is essentially the same as that of the Escherichia coli argininosuccinate synthetase. The small domain has the same fold as that of a new family of "N-type" ATP pyrophosphatases with the P-loop specific for the pyrophosphate of ATP. However, the enzyme shows the P-loop specific for the gamma-phosphate of ATP. The structure of the complex form is quite similar to that of the native one, indicating that no conformational change occurs upon the binding of ATP and the substrate analogues. ATP and the substrate analogues are bound to the active site with their reaction sites close to one another and located in a geometrical orientation favorable to the catalytic action. The reaction mechanism so far proposed seems to be consistent with the locations of ATP and the substrate analogues. The reaction may proceed without the large conformational change of the enzyme proposed for the catalytic process.


Subject(s)
Argininosuccinate Synthase/chemistry , Thermus thermophilus/enzymology , Adenosine Triphosphate/chemistry , Adenosine Triphosphate/metabolism , Amino Acid Sequence , Crystallization , Crystallography, X-Ray/methods , Hydrogen Bonding , Models, Molecular , Protein Conformation , Protein Structure, Secondary
16.
J Biol Chem ; 277(15): 13074-81, 2002 Apr 12.
Article in English | MEDLINE | ID: mdl-11809762

ABSTRACT

Argininosuccinate synthetase (AS) is the rate-limiting enzyme of both the urea and arginine-citrulline cycles. In mammals, deficiency of AS leads to citrullinemia, a debilitating and often fatal autosomal recessive urea cycle disorder, whereas its overexpression for sustained nitric oxide production via the arginine-citrulline cycle leads to the potentially fatal hypotension associated with septic and cytokine-induced circulatory shock. The crystal structures of Escherichia coli argininosuccinate synthetase (EAS) in complex with ATP and with ATP and citrulline have been determined at 2.0-A resolution. These are the first EAS structures to be solved in the presence of a nucleotide substrate and clearly identify the residues that interact with both ATP and citrulline. Two distinct conformations are revealed for ATP, both of which are believed to be catalytically relevant. In addition, comparisons of these EAS structures with those of the apoenzyme and EAS complexed with aspartate and citrulline (Lemke, C. T., and Howell, P. L. (2001) Structure (Lond.) 9, 1153-1164) provide structural evidence of ATP-induced conformational changes in the nucleotide binding domain. Combined, these structures also provide structural explanations of some of the observed kinetic properties of the enzyme and have enabled a detailed enzymatic mechanism of AS catalysis to be proposed.


Subject(s)
Argininosuccinate Synthase/metabolism , Argininosuccinate Synthase/chemistry , Catalysis , Crystallography, X-Ray , Protein Conformation , Substrate Specificity
17.
Structure ; 9(12): 1153-64, 2001 Dec.
Article in English | MEDLINE | ID: mdl-11738042

ABSTRACT

BACKGROUND: Argininosuccinate synthetase (AS) is the rate-limiting enzyme of both the urea and arginine-citrulline cycles. In mammals, deficiency of AS leads to citrullinemia, a debilitating and often fatal autosomal recessive urea cycle disorder, whereas its overexpression for sustained nitric oxide production via the arginine-citrulline cycle leads to the potentially fatal hypotension associated with septic and cytokine-induced circulatory shock. RESULTS: The crystal structure of E. coli AS (EAS) has been determined by the use of selenomethionine incorporation and MAD phasing. The structure has been refined at 1.6 A resolution in the absence of its substrates and at 2.0 A in the presence of aspartate and citrulline (EAS*CIT+ASP). Each monomer of this tetrameric protein has two structural domains: a nucleotide binding domain similar to that of the "N-type" ATP pyrophosphatase class of enzymes, and a novel catalytic/multimerization domain. The EAS*CIT+ASP structure clearly describes the binding of citrulline at the cleft between the two domains and of aspartate to a loop of the nucleotide binding domain, whereas homology modeling with the N-type ATP pyrophosphatases has provided the location of ATP binding. CONCLUSIONS: The first three-dimensional structures of AS are reported. The fold of the nucleotide binding domain confirms AS as the fourth structurally defined member of the N-type ATP pyrophosphatases. The structures identify catalytically important residues and suggest the requirement for a conformational change during the catalytic cycle. Sequence similarity between the bacterial and human enzymes has been used for providing insight into the structural and functional effects of observed clinical mutations.


Subject(s)
Argininosuccinate Synthase/chemistry , Argininosuccinate Synthase/genetics , Escherichia coli/enzymology , Adenosine Triphosphate/metabolism , Amino Acid Sequence , Animals , Aspartic Acid/chemistry , Binding Sites , Catalysis , Citrulline/chemistry , Crystallography, X-Ray , Dimerization , Humans , Models, Chemical , Models, Molecular , Molecular Sequence Data , Mutation , Nucleotides/metabolism , Protein Conformation , Protein Structure, Secondary , Protein Structure, Tertiary , Sequence Homology, Amino Acid
18.
Biochem J ; 352 Pt 3: 773-81, 2000 Dec 15.
Article in English | MEDLINE | ID: mdl-11104685

ABSTRACT

In a search for autophagosome-associated proteins, two-dimensional gel separations of proteins from purified autophagosomes, postnuclear supernatant, cytosol, lysosomes, mitochondria, endosomes and a cytomembrane fraction (mostly endoplasmic reticulum) were compared. Three proteins, with monomeric molecular masses of 43, 35 and 31 kDa, were enriched in total or sedimentable fractions of autophagosomes relative to the corresponding fractions of postnuclear supernatant, suggesting an association with the autophagosomal delimiting membrane. These proteins were also present on lysosomal membranes, but they were absent from mitochondria, and detected only in small amounts in the cytomembrane fraction and in endosomes, indicating that they were not associated with organelles sequestered by autophagy. However, all three proteins were present in the cytosol, suggesting that they were cytosolic proteins binding peripherally to the delimiting membrane of autophagosomes, probably to its innermost surface as indicated by their resistance to treatment of intact autophagosomes with proteinase or protein-stripping agents. Amino acid sequencing identified these proteins as an isoform of argininosuccinate synthase, an N-truncated variant of glyceraldehyde-3-phosphate dehydrogenase, and a sequence variant of short-chain 2-enoyl-CoA hydratase.


Subject(s)
Autophagy , Cytosol/enzymology , Isoenzymes/metabolism , Phagosomes/enzymology , Amino Acid Sequence , Animals , Argininosuccinate Synthase/chemistry , Argininosuccinate Synthase/metabolism , Cell Size , Cytosol/chemistry , Electrophoresis, Gel, Two-Dimensional , Endosomes/chemistry , Endosomes/enzymology , Enoyl-CoA Hydratase/chemistry , Enoyl-CoA Hydratase/metabolism , Freeze Fracturing , Glyceraldehyde-3-Phosphate Dehydrogenases/chemistry , Glyceraldehyde-3-Phosphate Dehydrogenases/metabolism , Humans , Intracellular Membranes/chemistry , Intracellular Membranes/enzymology , Isoenzymes/chemistry , Lysosomes/chemistry , Lysosomes/enzymology , Lysosomes/ultrastructure , Microscopy, Electron , Mitochondria/chemistry , Mitochondria/enzymology , Molecular Sequence Data , Molecular Weight , Phagosomes/chemistry , Phagosomes/ultrastructure , Sequence Alignment , Sequence Analysis, Protein
19.
Protein Sci ; 8(11): 2424-7, 1999 Nov.
Article in English | MEDLINE | ID: mdl-10595545

ABSTRACT

The gene thiI encodes a protein (ThiI) that plays a role in the transfer of sulfur from cysteine to both thiamin and 4-thiouridine, but the reaction catalyzed by ThiI remains undetermined. Based upon sequence alignments, ThiI shares a unique "P-loop" motif with the PPi synthetase family, four enzymes that catalyze adenylation and subsequent substitution of carbonyl oxygens. To test whether or not this motif is critical for ThiI function, the Asp in the motif was converted to Ala (D189A), and a screen for in vivo 4-thiouridine production revealed the altered enzyme to be inactive. Further scrutiny of sequence data and the crystal structures of two members of the PPi synthetase family implicated Lys321 in the proposed adenylation function of ThiI, and the critical nature of Lys321 has been demonstrated by site-directed mutagenesis and genetic screening. Our results, then, indicate that ThiI catalyzes the adenylation of a substrate at the expense of ATP, a narrowing of possible reactions that provides a strong new basis for deducing the early steps in the transfer of sulfur from cysteine to both thiamin and 4-thiouridine.


Subject(s)
Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Escherichia coli Proteins , Sulfurtransferases , Amide Synthases/chemistry , Amide Synthases/metabolism , Amino Acid Sequence , Argininosuccinate Synthase/chemistry , Argininosuccinate Synthase/metabolism , Aspartate-Ammonia Ligase/chemistry , Aspartate-Ammonia Ligase/metabolism , Bacterial Proteins/genetics , Carbon-Nitrogen Ligases/chemistry , Carbon-Nitrogen Ligases/metabolism , Escherichia coli/genetics , Escherichia coli/metabolism , Genetic Complementation Test , Molecular Sequence Data , Sequence Alignment , Sequence Homology, Amino Acid , Thiamine/biosynthesis , Thiouridine/metabolism
20.
Acta Crystallogr D Biol Crystallogr ; 55(Pt 12): 2028-30, 1999 Dec.
Article in English | MEDLINE | ID: mdl-10666579

ABSTRACT

A recombinant form of Escherichia coli argininosuccinate synthetase with a C-terminal polyhistidine affinity tag has been expressed, purified and subsequently crystallized using the hanging-drop vapour-diffusion technique. The crystals grow as large rectangular chunks with unit-cell dimensions a = 79.70, b = 105.84, c = 127.33 A, alpha = beta = gamma = 90 degrees. The crystals exhibit the symmetry of space group I222 and diffract to a minimum d-spacing of 1.6 A at station X8C of the National Synchrotron Light Source, Brookhaven National Laboratory. On the basis of density calculations, one monomer of this homotetrameric protein is predicted per asymmetric unit (Matthews coefficient V(m) = 2.69 A(3) Da(-1)).


Subject(s)
Argininosuccinate Synthase/chemistry , Argininosuccinate Synthase/genetics , Argininosuccinate Synthase/isolation & purification , Crystallization , Crystallography, X-Ray , Escherichia coli/enzymology , Escherichia coli/genetics , Gene Expression , Genes, Bacterial , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification
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