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1.
PLoS One ; 16(11): e0257114, 2021.
Article in English | MEDLINE | ID: mdl-34813599

ABSTRACT

PURPOSE: Allergens present in the feces or frass of cockroaches can cause allergic sensitization in humans. The use of fecal and frass extracts for immunotherapy has been previously investigated but has not yet been fully standardized. Here, we treated cockroaches with ampicillin to produce extracts with reduced amounts of total bacteria. METHODS: We performed targeted high-throughput sequencing of 16S rDNA to compare the microbiomes of ampicillin-treated and untreated (control) cockroaches. RNA-seq was performed to identify differentially expressed genes (DEGs) in ampicillin-treated cockroaches. RESULTS: Analysis of the microbiome revealed that alpha diversity was lower in the ampicillin-treated group than in the control group. Beta diversity analysis indicated that ampicillin treatment altered bacterial composition in the microbiome of cockroaches. Quantitative polymerase chain reaction revealed that almost all bacteria were removed from ampicillin-treated cockroaches. RNA-seq analysis revealed 1,236 DEGs in ampicillin-treated cockroaches (compared to untreated cockroaches). Unlike bacterial composition, the DEGs varied between the two groups. Among major allergens, the expression of Bla g 2 decreased significantly in ampicillin-treated cockroaches (compared to untreated group). CONCLUSIONS: In this study, the reduced level of allergens observed in cockroaches may be related to lower amounts of total bacteria caused by treatment with antibiotics. It is possible to make a protein extract with few bacteria for use in immunotherapy.


Subject(s)
Allergens/isolation & purification , Ampicillin/pharmacology , Anti-Bacterial Agents/pharmacology , Aspartic Acid Endopeptidases/isolation & purification , Cockroaches/drug effects , Microbiota/drug effects , Animals , Cockroaches/microbiology
2.
Sci Rep ; 11(1): 14501, 2021 07 14.
Article in English | MEDLINE | ID: mdl-34262119

ABSTRACT

Cynara cardunculus L. or cardoon is a plant that is used as a source of milk clotting enzymes during traditional cheese manufacturing. This clotting activity is due to aspartic proteases (APs) found in the cardoon flower, named cyprosins and cardosins. APs from cardoon flowers display a great degree of heterogeneity, resulting in variable milk clotting activities and directly influencing the final product. Producing these APs using alternative platforms such as bacteria or yeast has proven challenging, which is hampering their implementation on an industrial scale. We have developed tobacco BY2 cell lines as an alternative plant-based platform for the production of cardosin B. These cultures successfully produced active cardosin B and a purification pipeline was developed to obtain isolated cardosin B. The enzyme displayed proteolytic activity towards milk caseins and milk clotting activity under standard cheese manufacturing conditions. We also identified an unprocessed form of cardosin B and further investigated its activation process. The use of protease-specific inhibitors suggested a possible role for a cysteine protease in cardosin B processing. Mass spectrometry analysis identified three cysteine proteases containing a granulin-domain as candidates for cardosin B processing. These findings suggest an interaction between these two groups of proteases and contribute to an understanding of the mechanisms behind the regulation and processing of plant APs. This work also paves the way for the use of tobacco BY2 cells as an alternative production system for active cardosins and represents an important advancement towards the industrial production of cardoon APs.


Subject(s)
Aspartic Acid Endopeptidases/genetics , Aspartic Acid Endopeptidases/metabolism , Nicotiana/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism , Animals , Aspartic Acid Endopeptidases/isolation & purification , Caseins/metabolism , Cysteine Proteases/metabolism , Hydrogen-Ion Concentration , Milk , Plant Cells , Plant Extracts/chemistry , Plant Proteins/isolation & purification , Plants, Genetically Modified , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Temperature , Nicotiana/cytology , Nicotiana/genetics
3.
Food Chem ; 345: 128741, 2021 May 30.
Article in English | MEDLINE | ID: mdl-33601650

ABSTRACT

Bovine whey protein was hydrolysed using cardosins A and B purified from dried flowers of Cynara cardunculus by combining diafiltration, anion-exchange chromatography and ultrafiltration. The proteolysis experiments were performed using different whey protein concentrations and enzyme/substrate (E/S) ratios. Complete hydrolysis of the main whey proteins, ß-Lactoglobulin (ß-Lg) and α-lactalbumin (α-La), was achieved after 4 h, at E/S ratios of 1/150 U/mg, regardless the initial protein concentration. In previous reports, the authors suggested that cardosins could not hydrolyse ß-lactoblogulin. However, our promising results open up new possibilities to further explore the action of cardosins on whey proteins for the production of bioactive peptides.


Subject(s)
Aspartic Acid Endopeptidases/metabolism , Cynara/enzymology , Lactoglobulins/metabolism , Plant Proteins/metabolism , Animals , Antioxidants/metabolism , Aspartic Acid Endopeptidases/isolation & purification , Cattle , Chromatography, High Pressure Liquid , Chromatography, Reverse-Phase , Flowers/enzymology , Flowers/metabolism , Hydrolysis , Lactalbumin/metabolism , Lactoglobulins/analysis , Plant Proteins/isolation & purification , Substrate Specificity
4.
Molecules ; 25(2)2020 Jan 09.
Article in English | MEDLINE | ID: mdl-31936569

ABSTRACT

A molecular imaging probe to fluorescently image the ß-site of the amyloid precursor protein (APP) cleaving enzyme 1 (BACE1) and cathepsin D (CatD) enzymes associated with Alzheimer's disease (AD) was designed and synthesized. This imaging probe was built upon iron oxide nanoparticles (cross-linked dextran iron oxide nanoparticles, or CLIO). Peptide substrates containing a terminal near-infrared fluorochrome (fluorophore emitting at 775 nm for CatD or fluorophore emitting at 669 nm for BACE1) were conjugated to the CLIO nanoparticles. The CatD substrate contained a phenylalanine-phenylalanine cleavage site more specific to CatD than BACE1. The BACE1 substrate contained the sequence surrounding the leucine-asparagine cleavage site of the BACE1 found in the Swedish mutation of APP, which is more specific to BACE1 than CatD. These fluorescently-labeled peptide substrates were then conjugated to the nanoparticle. The nanoparticle probes were purified by gel filtration, and their fluorescence intensities were determined using a fluorescence plate reader. The CatD peptide substrate demonstrated a 15.5-fold increase in fluorescence when incubated with purified CatD enzyme, and the BACE1 substrate exhibited a 31.5-fold increase in fluorescence when incubated with purified BACE1 enzyme. Probe specificity was also demonstrated in the human H4 neuroglioma cells and the H4 cells stably transfected with BACE1 in which the probe monitored enzymatic cleavage. In the H4 and H4-BACE1 cells, BACE1 and active CatD activity increased, an occurrence that was reflected in enzyme expression levels as determined by immunoblotting. These results demonstrate the applicability of this probe for detecting potential Alzheimer's enzyme biomarkers.


Subject(s)
Alzheimer Disease/diagnosis , Amyloid Precursor Protein Secretases/chemistry , Aspartic Acid Endopeptidases/chemistry , Cathepsin D/chemistry , Molecular Imaging , Alzheimer Disease/genetics , Amino Acid Sequence/genetics , Amyloid Precursor Protein Secretases/genetics , Amyloid Precursor Protein Secretases/isolation & purification , Amyloid beta-Protein Precursor/chemistry , Amyloid beta-Protein Precursor/genetics , Amyloid beta-Protein Precursor/isolation & purification , Aspartic Acid Endopeptidases/genetics , Aspartic Acid Endopeptidases/isolation & purification , Biomarkers/chemistry , Cathepsin D/genetics , Cathepsin D/isolation & purification , Fluorescent Dyes/chemistry , Fluorescent Dyes/isolation & purification , Humans
5.
Int J Biol Macromol ; 144: 325-333, 2020 Feb 01.
Article in English | MEDLINE | ID: mdl-31830451

ABSTRACT

In this study, label-free quantitative proteomics was used to investigate the biological functions of M. oleifera seed proteins, which resulted in the identification of milk-clotting proteases. In total, 921 proteins were identified, and proteins within the molecular weight range of 30-50 kDa were abundant. The identified proteins were mainly involved in catalytic activity and metabolic processes associated with carbohydrate and protein metabolism, among which, proteases in the observed molecular weight range could possibly be responsible for the previously reported milk-clotting activity. An aspartic-type endopeptidase with molecular mass of 45,517 Da was purified from M. oleifera seeds using ammonium sulfate precipitation, ultrafiltration, and preparative high performance liquid chromatography, and was characterized using liquid chromatography-mass spectrometry (LC-MS)/MS. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis revealed that the purified protease exhibited hydrolase activity and was involved in several metabolic pathways, which further confirmed that proteomic analysis can assist in the purification of the milk-clotting protease. The optimal temperature and pH required for protease activity were 60 °C and 5.0, respectively. The high thermal stability and good pH stability of the protease indicated that it can be used in the dairy industry.


Subject(s)
Aspartic Acid Endopeptidases/metabolism , Milk/chemistry , Moringa oleifera/enzymology , Proteomics , Animals , Aspartic Acid Endopeptidases/isolation & purification , Chromatography, Liquid , Gene Ontology , Hot Temperature , Hydrogen-Ion Concentration , Mass Spectrometry , Moringa oleifera/chemistry , Plant Proteins/isolation & purification , Plant Proteins/metabolism , Seeds/chemistry , Seeds/enzymology
6.
Biochemistry ; 58(44): 4424-4435, 2019 11 05.
Article in English | MEDLINE | ID: mdl-31549827

ABSTRACT

BACE1 (Beta-site Amyloid Precursor Protein (APP) Cleaving Enzyme 1) is a promising therapeutic target for Alzheimer's Disease (AD). However, efficient expression, purification, and crystallization systems are not well described or detailed in the literature nor are approaches for treatment of enzyme kinetic data for potent inhibitors well described. We therefore developed a platform for expression and purification of BACE1, including protein refolding from E.coli inclusion bodies, in addition to optimizing a reproducible crystallization procedure of BACE1 bound with inhibitors. We also report a detailed approach to the proper analysis of enzyme kinetic data for compounds that exhibit either rapid-equilibrium or tight-binding mechanisms. Our methods allow for the purification of ∼15 mg of BACE1 enzyme from 1 L of culture which is higher than reported yields in the current literature. To evaluate the data analysis approach developed here, a well-known potent inhibitor and two of its derivatives were tested, analyzed, and compared. The inhibitory constants (Ki) obtained from the kinetic studies are in agreement with dissociation constants (Kd) that were also determined using isothermal titration calorimetry (ITC) experiments. The X-ray structures of these three compounds in complex with BACE1 were readily obtained and provide important insight into the structure and thermodynamics of the BACE1-inhibitor interactions.


Subject(s)
Amyloid Precursor Protein Secretases/isolation & purification , Amyloid Precursor Protein Secretases/metabolism , Aspartic Acid Endopeptidases/isolation & purification , Aspartic Acid Endopeptidases/metabolism , Macrocyclic Compounds/chemistry , Protease Inhibitors/chemistry , Amyloid Precursor Protein Secretases/antagonists & inhibitors , Aspartic Acid Endopeptidases/antagonists & inhibitors , Catalytic Domain , Cell Line, Tumor , Crystallization , Crystallography, X-Ray , Drug Discovery , Enzyme Assays , Humans , Kinetics , Macrocyclic Compounds/metabolism , Protease Inhibitors/metabolism , Protein Binding , Protein Refolding
7.
Nano Lett ; 18(1): 381-385, 2018 01 10.
Article in English | MEDLINE | ID: mdl-29231738

ABSTRACT

The function of integral membrane proteins is critically dependent on their naturally surrounding lipid membrane. Detergent-solubilized and purified membrane proteins are therefore often reconstituted into cell-membrane mimics and analyzed for their function with single-molecule microscopy. Expansion of this approach toward a broad range of pharmaceutically interesting drug targets and biomarkers however remains hampered by the fact that these proteins have low expression levels, and that detergent solubilization and reconstitution often cause protein conformational changes and loss of membrane-specific cofactors, which may impair protein function. To overcome this limitation, we here demonstrate how antibody-modified nanoparticles can be used to achieve affinity purification and enrichment of selected integral membrane proteins directly from cell membrane preparations. Nanoparticles were first bound to the ectodomain of ß-secretase 1 (BACE1) contained in cell-derived membrane vesicles. In a subsequent step, these were merged into a continuous supported membrane in a microfluidic channel. Through the extended nanoparticle tag, a weak (∼fN) hydrodynamic force could be applied, inducing directed in-membrane movement of targeted BACE1 exclusively. This enabled selective thousand-fold enrichment of the targeted membrane protein while preserving a natural lipid environment. In addition, nanoparticle-targeting also enabled simultaneous tracking analysis of each individual manipulated protein, revealing how their mobility changed when moved from one lipid environment to another. We therefore believe this approach will be particularly useful for separation in-line with single-molecule analysis, eventually opening up for membrane-protein sorting devices analogous to fluorescence-activated cell sorting.


Subject(s)
Antibodies, Immobilized/chemistry , Cell Membrane/chemistry , Membrane Proteins/isolation & purification , Nanoparticles/chemistry , Amyloid Precursor Protein Secretases/isolation & purification , Animals , Aspartic Acid Endopeptidases/isolation & purification , Cell Line , Humans , Lab-On-A-Chip Devices , Lipid Bilayers/chemistry , Liposomes/chemistry
8.
Int J Biol Macromol ; 98: 847-854, 2017 May.
Article in English | MEDLINE | ID: mdl-28202335

ABSTRACT

Withania coagulans fruit has traditionally been used as milk coagulant. The present study reports the purification and characterization of an aspartic protease from W. coagulans fruit. The enzyme was purified via fractional ammonium sulfate precipitation and cation exchange chromatography. SDS-PAGE analysis revealed the presence of a monomeric protein with molecular weight of 31kDa. Proteolytic activity (PA) of the protease was evaluated using casein, and the milk-clotting activity (MCA) was analyzed by skim milk. The Km and Vmax values of the enzyme for casein were obtained to be 1.29mg/ml and 0.035µmol Tyr/min, respectively. Optimal temperature and pH were 65°C and 5.5, respectively. After incubation of enzyme at 65°C for 1h, 73% of PA was remained which demonstrated high thermal stability of the enzyme. Mass spectrometry analysis of the purified protease and enzyme assays in the presence of protease inhibitors indicated that aspartic protease was the only responsible enzyme in milk coagulation. Furthermore, by investigating the effect of salts on enzyme activity, it was observed that both NaCl and CaCl2 reduced enzyme activity. These characteristics of the protease suggest that the enzyme may be suitable for producing low salt content cheeses.


Subject(s)
Aspartic Acid Endopeptidases/isolation & purification , Aspartic Acid Proteases/isolation & purification , Caseins/chemistry , Animals , Aspartic Acid Endopeptidases/chemistry , Aspartic Acid Proteases/chemistry , Cattle , Enzyme Stability , Fruit/enzymology , Hydrolysis , Milk/chemistry , Molecular Weight , Withania/enzymology
9.
Methods Enzymol ; 584: 127-155, 2017.
Article in English | MEDLINE | ID: mdl-28065261

ABSTRACT

Intramembrane proteases catalyze peptide bond hydrolysis in the lipid bilayer and play a key role in numerous cellular processes. These integral membrane enzymes consist of four classes: site-2 protease (S2P), rhomboid serine protease, Rce1-type glutamyl protease, and aspartyl protease exemplified by presenilin and signal peptide peptidase (SPP). Structural elucidation of these enzymes is important for mechanistic understanding of their functions, particularly their roles in cell signaling and debilitating diseases such as Parkinson's disease and Alzheimer's disease. In the past decade, rigorous effort has led to determination of the crystal structures of S2P from archaebacterium, rhomboid serine protease from E. coli (GlpG), and presenilin/SPP from archaebacterium (PSH). A novel method has been developed to express well-behaved human γ-secretase, which facilitated its structure determination by cryoelectron microscopy (cryo-EM). In this chapter, we will discuss the expression and purification of intramembrane proteases including human γ-secretase and describe the enzymatic activity assays for these intramembrane proteases.


Subject(s)
Aspartic Acid Endopeptidases/chemistry , Cell Membrane/enzymology , Cryoelectron Microscopy/methods , Molecular Biology/methods , Alzheimer Disease/enzymology , Amyloid Precursor Protein Secretases/chemistry , Amyloid Precursor Protein Secretases/genetics , Amyloid Precursor Protein Secretases/isolation & purification , Aspartic Acid Endopeptidases/genetics , Aspartic Acid Endopeptidases/isolation & purification , Cell Membrane/chemistry , Endopeptidases/chemistry , Endopeptidases/genetics , Endopeptidases/isolation & purification , Escherichia coli/genetics , Humans , Metalloendopeptidases/chemistry , Metalloendopeptidases/genetics , Metalloendopeptidases/isolation & purification , Parkinson Disease/enzymology , Signal Transduction , Substrate Specificity
10.
Biosci Biotechnol Biochem ; 80(9): 1681-92, 2016 Sep.
Article in English | MEDLINE | ID: mdl-27151561

ABSTRACT

This paper describes the modern enzymology in Japanese bioindustries. The invention of Takadiastase by Jokiti Takamine in 1894 has revolutionized the world of industrial enzyme production by fermentation. In 1949, a new γ-amylase (glucan 1,4-α-glucosidase, EC 3.2.1.3) from A. luchuensis (formerly designated as A. awamori), was found by Kitahara. RNase T1 (guanyloribonuclease, EC 3.1.27.3) was discovered by Sato and Egami. Ando discovered Aspergillus nuclease S1 (single-stranded nucleate endonuclease, EC 3.1.30.1). Aspergillopepsin I (EC 3.4.23.18) from A. tubingensis (formerly designated as A. saitoi) activates trypsinogen to trypsin. Shintani et al. demonstrated Asp76 of aspergillopepsin I as the binding site for the basic substrate, trypsinogen. The new oligosaccharide moieties Man10GlcNAc2 and Man11GlcNAc2 were identified with α-1,2-mannosidase (EC 3.2.1.113) from A. tubingensis. A yeast mutant compatible of producing Man5GlcNAc2 human compatible sugar chains on glycoproteins was constructed. The acid activation of protyrosinase from A. oryzae at pH 3.0 was resolved. The hyper-protein production system of glucoamylase was established in a submerged culture.


Subject(s)
Aspergillus oryzae/enzymology , Biotechnology , Fermentation , Aspartic Acid Endopeptidases/isolation & purification , Aspartic Acid Endopeptidases/metabolism , Aspergillus oryzae/metabolism , Fungal Proteins/isolation & purification , Fungal Proteins/metabolism , Glucan 1,4-alpha-Glucosidase/isolation & purification , Glucan 1,4-alpha-Glucosidase/metabolism , Humans , Japan , Ribonuclease T1/isolation & purification , Ribonuclease T1/metabolism , Single-Strand Specific DNA and RNA Endonucleases/isolation & purification , Single-Strand Specific DNA and RNA Endonucleases/metabolism , Trypsinogen/metabolism
11.
Nanomedicine ; 12(4): 1033-1043, 2016 May.
Article in English | MEDLINE | ID: mdl-26767511

ABSTRACT

When inhaled nanoparticles deposit in the lungs, they transit through respiratory tract lining fluid (RTLF) acquiring a biomolecular corona reflecting the interaction of the RTLF with the nanomaterial surface. Label-free snapshot proteomics was used to generate semi-quantitative profiles of corona proteins formed around silica (SiO2) and poly(vinyl) acetate (PVAc) nanoparticles in RTLF, the latter employed as an archetype drug delivery vehicle. The evolved PVAc corona was significantly enriched compared to that observed on SiO2 nanoparticles (698 vs. 429 proteins identified); however both coronas contained a substantial contribution from innate immunity proteins, including surfactant protein A, napsin A and complement (C1q and C3) proteins. Functional protein classification supports the hypothesis that corona formation in RTLF constitutes opsonisation, preparing particles for phagocytosis and clearance from the lungs. These data highlight how an understanding of the evolved corona is necessary for the design of inhaled nanomedicines with acceptable safety and tailored clearance profiles. FROM THE CLINICAL EDITOR: Inhaled nanoparticles often acquire a layer of protein corona while they go through the respiratory tract. Here, the authors investigated the identity of these proteins. The proper identification would improve the understanding of the use of inhaled nanoparticles in future therapeutics.


Subject(s)
Drug Delivery Systems , Nanoparticles/administration & dosage , Protein Corona , Respiratory System/metabolism , Adult , Aspartic Acid Endopeptidases/biosynthesis , Aspartic Acid Endopeptidases/isolation & purification , Body Fluids/metabolism , Complement C1q/biosynthesis , Complement C1q/isolation & purification , Complement C3/biosynthesis , Complement C3/isolation & purification , Female , Gene Expression Regulation/drug effects , Humans , Male , Nanoparticles/adverse effects , Proteomics , Pulmonary Surfactant-Associated Protein A/biosynthesis , Pulmonary Surfactant-Associated Protein A/isolation & purification , Respiratory System/drug effects , Silicon Dioxide/administration & dosage , Silicon Dioxide/chemistry
12.
Bioorg Med Chem ; 23(13): 3260-8, 2015 Jul 01.
Article in English | MEDLINE | ID: mdl-26001341

ABSTRACT

The BACE1 enzyme is a key target for Alzheimer's disease. During our BACE1 research efforts, fragment screening revealed that bicyclic thiazine 3 had low millimolar activity against BACE1. Analysis of the co-crystal structure of 3 suggested that potency could be increased through extension toward the S3 pocket and through conformational constraint of the thiazine core. Pursuit of S3-binding groups produced low micromolar inhibitor 6, which informed the S3-design for constrained analogs 7 and 8, themselves prepared via independent, multi-step synthetic routes. Biological characterization of BACE inhibitors 6-8 is described.


Subject(s)
Amyloid Precursor Protein Secretases/antagonists & inhibitors , Aspartic Acid Endopeptidases/antagonists & inhibitors , Bridged Bicyclo Compounds/chemical synthesis , Protease Inhibitors/chemical synthesis , Thiazines/chemical synthesis , Amyloid Precursor Protein Secretases/chemistry , Amyloid Precursor Protein Secretases/isolation & purification , Animals , Aspartic Acid Endopeptidases/chemistry , Aspartic Acid Endopeptidases/isolation & purification , Brain Chemistry , Bridged Bicyclo Compounds/chemistry , Crystallography, X-Ray , Drug Design , Humans , Mice , Molecular Conformation , Molecular Docking Simulation , Protease Inhibitors/chemistry , Stereoisomerism , Thiazines/chemistry
13.
Mol Biochem Parasitol ; 201(1): 5-15, 2015 May.
Article in English | MEDLINE | ID: mdl-25986559

ABSTRACT

Plasmepsin V from Plasmodium falciparum (PfPMV) is responsible for the cleavage of the Plasmodium export element (PEXEL) motif at the N-terminus of several hundreds of the exported proteins. PfPMV is necessary for parasite viability and has become a novel promising target for antimalarial therapy. The first recombinant expression of soluble, active PfPMV as thioredoxin fusion proteins is reported herein. Two truncated forms of PfPMV were fused to thioredoxin (Trx) to generate Trx-PfPMVp37 and Trx-PfPMVm84. The fusion proteins were successfully purified using Ni(2+) affinity chromatography in combination with ATP treatment to eliminate Escherichia coli HSP60 contaminant. Trx-PfPMVm84 could hydrolyze the PEXEL-containing peptides more efficiently than Trx-PfPMVp37. Interestingly, both Trx-PfPMVs preferred to cleave PfEMP2 peptide over HRPII peptide. The replacement of Ser with Val or Glu at P1' position created a substrate with 75% reduction in the enzyme activity, whereas the substitution of Ile with Lys or Glu at P2 position reduced the cleavage efficiency by 30%. The activity of Trx-PfPMVm84 was inhibited by PMSF and nelfinavir but not by pepstatin A. After the removal of Trx domain, activities of both enzymes toward PfEMP2 and HRPII peptides were fitted to the Michaelis-Menten model to determine kinetic parameters. The Km values toward both peptides were apparently much lower than the previously reported data although with similar kcat values. Along with an improved PfPMV preparation protocol, these findings have provided insights into its substrate specificity at P2 and P1' positions as well as interactions among the enzyme, substrates, and inhibitors.


Subject(s)
Aspartic Acid Endopeptidases/metabolism , Plasmodium falciparum/enzymology , Recombinant Fusion Proteins/metabolism , Amino Acid Sequence , Aspartic Acid Endopeptidases/chemistry , Aspartic Acid Endopeptidases/genetics , Aspartic Acid Endopeptidases/isolation & purification , Catalytic Domain , Chromatography, Affinity , Escherichia coli/genetics , Gene Expression , Kinetics , Molecular Sequence Data , Molecular Weight , Mutagenesis, Site-Directed , Mutant Proteins/chemistry , Mutant Proteins/genetics , Mutant Proteins/isolation & purification , Mutant Proteins/metabolism , Proteolysis , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/isolation & purification , Substrate Specificity
14.
Hum Vaccin Immunother ; 11(6): 1474-88, 2015.
Article in English | MEDLINE | ID: mdl-25905574

ABSTRACT

Over 400 million people living in the world's poorest developing nations are infected with hookworms, mostly of the genus Necator americanus. A bivalent human hookworm vaccine composed of the Necator americanus Glutathione S-Transferase-1 (Na-GST-1) and the Necator americanus Aspartic Protease-1 (Na-APR-1 (M74)) is currently under development by the Sabin Vaccine Institute Product Development Partnership (Sabin PDP). Both monovalent vaccines are currently in Phase 1 trials. Both Na-GST-1 and Na-APR-1 antigens are expressed as recombinant proteins. While Na-GST-1 was found to express with high yields in Pichia pastoris, the level of expression of Na-APR-1 in this host was too low to be suitable for a manufacturing process. When the tobacco plant Nicotiana benthamiana was evaluated as an expression system, acceptable levels of solubility, yield, and stability were attained. Observed expression levels of Na-APR-1 (M74) using this system are ∼300 mg/kg. Here we describe the achievements and obstacles encountered during process development as well as characterization and stability of the purified Na-APR-1 (M74) protein and formulated vaccine. The expression, purification and analysis of purified Na-APR-1 (M74) protein obtained from representative 5 kg reproducibility runs performed to qualify the Na-APR-1 (M74) production process is also presented. This process has been successfully transferred to a pilot plant and a 50 kg scale manufacturing campaign under current Good Manufacturing Practice (cGMP) has been performed. The 50 kg run has provided a sufficient amount of protein to support the ongoing hookworm vaccine development program of the Sabin PDP.


Subject(s)
Antigens, Helminth/isolation & purification , Antigens, Helminth/metabolism , Aspartic Acid Endopeptidases/isolation & purification , Aspartic Acid Endopeptidases/metabolism , Necator americanus/enzymology , Vaccines, Synthetic/isolation & purification , Vaccines, Synthetic/metabolism , Animals , Antigens, Helminth/genetics , Aspartic Acid Endopeptidases/genetics , Biotechnology/methods , Gene Expression , Necator americanus/genetics , Plants, Genetically Modified/genetics , Plants, Genetically Modified/metabolism , Technology, Pharmaceutical/methods , Nicotiana/genetics , Nicotiana/metabolism , Vaccines, Synthetic/genetics
15.
Mol Biochem Parasitol ; 204(2): 51-63, 2015 Dec.
Article in English | MEDLINE | ID: mdl-26795263

ABSTRACT

Plasmepsin V (PMV) is a Plasmodium aspartic protease responsible for the cleavage of the Plasmodium export element (PEXEL) motif, which is an essential step for export of PEXEL containing proteins and crucial for parasite viability. Here we describe the genetic polymorphism of Plasmodium vivax PMV (PvPMV) Thailand isolates, followed by cloning, expression, purification and characterization of PvPMV-Thai, presenting the pro- and mature-form of PvPMV-Thai. With our refolding and purification method, approximately 1mg of PvPMV-Thai was obtained from 1g of washed inclusion bodies. Unlike PvPMV-Ind and PvPMV-Sal-1, PvPMV-Thai contains a four-amino acid insertion (SVSE) at residues 246-249. We have confirmed that this insertion did not interfere with the catalytic activity as it is located in the long loop (R241-E272) pointing away from the substrate-binding pocket. PvPMV-Thai exhibited similar activity to PfPMV counterparts in which PfEMP2 could be hydrolyzed more efficiently than HRPII. Substrate specificity studies at P1' showed that replacing Ser by Val or Glu of the PfEMP2 peptide markedly reduced the enzyme activity of PvPMV similar to that of PfPMV whereas replacing His by Val or Ser of the HRPII peptide increased the cleavage activity. However, the substitution of amino acids at the P2 position with Glu dramatically reduced the cleavage efficiency by 80% in PvPMV in contrast to 30% in PfPMV, indicating subtle differences around the S2 binding pocket of both PfPMV and PvPMV. Four inhibitors were also evaluated for PvPMV-Thai activity including PMSF, pepstatin A, nelfinavir, and menisporopsin A-a macrocyclic polylactone. We are the first to show that menisporopsin A partially inhibits the PvPMV-Thai activity at high concentration. Taken together, these findings provide insights into recombinant production, substrate specificity and inhibition of PvPMV-Thai.


Subject(s)
Aspartic Acid Endopeptidases/chemistry , Aspartic Acid Endopeptidases/metabolism , Malaria, Vivax/parasitology , Plasmodium vivax/enzymology , Protozoan Proteins/chemistry , Protozoan Proteins/metabolism , Amino Acid Motifs , Aspartic Acid Endopeptidases/genetics , Aspartic Acid Endopeptidases/isolation & purification , Enzyme Stability , Erythrocytes/parasitology , Humans , Kinetics , Plasmodium vivax/chemistry , Plasmodium vivax/genetics , Plasmodium vivax/isolation & purification , Protozoan Proteins/genetics , Protozoan Proteins/isolation & purification , Substrate Specificity , Thailand
16.
Anal Chem ; 86(19): 9945-53, 2014 Oct 07.
Article in English | MEDLINE | ID: mdl-25207962

ABSTRACT

Despite the recent advances in structural analysis of monoclonal antibodies with bottom-up, middle-down, and top-down mass spectrometry (MS), further improvements in analysis accuracy, depth, and speed are needed. The remaining challenges include quantitatively accurate assignment of post-translational modifications, reduction of artifacts introduced during sample preparation, increased sequence coverage per liquid chromatography (LC) MS experiment, and ability to extend the detailed characterization to simple antibody cocktails and more complex antibody mixtures. Here, we evaluate the recently introduced extended bottom-up proteomics (eBUP) approach based on proteolysis with secreted aspartic protease 9, Sap9, for analysis of monoclonal antibodies. Key findings of the Sap9-based proteomics analysis of a single antibody include: (i) extensive antibody sequence coverage with up to 100% for the light chain and up to 99-100% for the heavy chain in a single LC-MS run; (ii) connectivity of complementarity-determining regions (CDRs) via Sap9-produced large proteolytic peptides (3.4 kDa on average) containing up to two CDRs per peptide; (iii) reduced artifact introduction (e. g., deamidation) during proteolysis with Sap9 compared to conventional bottom-up proteomics workflows. The analysis of a mixture of six antibodies via Sap9-based eBUP produced comparable results. Due to the reasons specified above, Sap9-produced proteolytic peptides improve the identification confidence of antibodies from the mixtures compared to conventional bottom-up proteomics dealing with shorter proteolytic peptides.


Subject(s)
Antibodies, Monoclonal/chemistry , Aspartic Acid Endopeptidases/chemistry , Fungal Proteins/chemistry , Immunoglobulin G/chemistry , Peptides/isolation & purification , Proteomics/methods , Aspartic Acid Endopeptidases/isolation & purification , Candida albicans/chemistry , Candida albicans/enzymology , Chromatography, Liquid , Complementarity Determining Regions , Fungal Proteins/isolation & purification , Humans , Mass Spectrometry , Proteolysis
17.
PLoS One ; 9(2): e89424, 2014.
Article in English | MEDLINE | ID: mdl-24586769

ABSTRACT

Plasmodium falciparum plasmepsin-I (PM-I) has been considered a potential drug target for the parasite that causes fatal malaria in human. Determination of PM-I structures for rational design of its inhibitors is hindered by the difficulty in obtaining large quantity of soluble enzyme. Nearly all attempts for its heterologous expression in Escherichia coli result in the production of insoluble proteins in both semi-pro-PM-I and its truncated form, and thus require protein refolding. Moreover, the yields of purified, soluble PM-I from all reported studies are very limited. Exclusion of truncated semi-pro-PM-I expression in E. coli C41(DE3) is herein reported. We also show that the low preparation yield of purified semi-pro-PM-I with autoprocessing ability is mainly a result of structural instability of the refolded enzyme in acidic conditions due to incomplete formation of disulfide linkages. Upon formation of at least one of the two natural disulfide bonds, nearly all of the refolded semi-pro-PM-I could be activated to its mature form. A significantly improved yield of 10 mg of semi-pro-PM-I per liter of culture, which resulted in 6-8 mg of the mature PM-I, was routinely obtained using this strategy.


Subject(s)
Aspartic Acid Endopeptidases/isolation & purification , Aspartic Acid Endopeptidases/metabolism , Disulfides/chemistry , Inclusion Bodies/metabolism , Plasmodium falciparum/metabolism , Protein Refolding , Recombinant Proteins/isolation & purification , Amino Acid Sequence , Aspartic Acid Endopeptidases/genetics , Disulfides/metabolism , Humans , Molecular Sequence Data , Plasmodium falciparum/genetics , Protein Engineering , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Substrate Specificity
18.
Ann Allergy Asthma Immunol ; 112(3): 256-60, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24491312

ABSTRACT

BACKGROUND: Home characteristics and aeroallergen exposure in rural US children with asthma are poorly described. OBJECTIVE: To examine the relationship between cockroach and mouse allergen concentrations and home characteristics of children with asthma in the rural Arkansas Delta. METHODS: The home environments of rural children with asthma were examined using home environment questionnaire and home inspection. Bedroom and kitchen dust was analyzed for cockroach and mouse allergen concentrations. RESULTS: The median age of participants was 9 years, and 84% were African American. Most participants (78%) resided in single-family homes. Evidence of cockroaches was detected in 13% of homes and evidence of rodents was detected in 23% of homes. Detectable Bla g 1 was found in 58% of kitchens and 43% of bedrooms, Bla g 2 was detected in 37% of kitchens and 28% of bedrooms, and Mus m 1 was found in 81% of kitchens and 97% of bedrooms. Evidence of cockroaches in any room was associated with Bla g 1 concentrations of ≥2 U/g (odds ratio 21.71, 95% confidence interval 4.26-118.39) and Bla g 2 concentrations of ≥2 U/g (odds ratio 21.90 95% confidence interval 4.30-138.91). Multifamily vs single-family dwellings were more likely to have Bla g 2 concentrations of ≥2 U/g (odds ratio 3.52, 95% confidence interval 1.0-11.82). Home characteristics were not associated with Mus m 1. CONCLUSION: Mouse and cockroach allergens were detected in most rural homes; however, concentrations were relatively low compared with those previously reported in inner-city homes. Few home characteristics predicted allergen concentrations. Further studies are needed to establish clinically relevant associations that might place rural children with asthma at risk for poor clinical outcomes. TRIAL REGISTRATION: ClinicalTrials.gov Identifier: NCT00590304.


Subject(s)
Allergens/isolation & purification , Aspartic Acid Endopeptidases/isolation & purification , Asthma/immunology , Cockroaches/immunology , Environmental Exposure/adverse effects , Black or African American , Air Pollution, Indoor , Allergens/immunology , Animals , Arkansas , Aspartic Acid Endopeptidases/immunology , Child , Dust/analysis , Dust/immunology , Female , Humans , Male , Mice , Rural Population , Surveys and Questionnaires , White People
19.
Parasit Vectors ; 6: 175, 2013 Jun 14.
Article in English | MEDLINE | ID: mdl-23768047

ABSTRACT

BACKGROUND: Toxoplasma gondii is an obligate intracellular parasite that can pose a serious threat to human health by causing toxoplasmosis. There are no drugs that target the chronic cyst stage of this infection; therefore, development of an effective vaccine would be an important advance. Aspartic proteases play essential roles in the T. gondii lifecycle. The parasite has four aspartic protease encoding genes, which are called toxomepsin 1, 2, 3 and 5 (TgASP1, 2, 3 and 5, respectively). METHODS: Bioinformatics approaches have enabled us to identify several promising linear-B cell epitopes and potential Th-cell epitopes on TgASP1, thus supporting its potential as a DNA vaccine against toxoplasmosis. We expressed TgASP1 in Escherichia coli and used the purified protein to immunize BALB/c mice. The antibodies obtained were used to determine where TgASP1 was localized in the parasite. We also made a TgASP1 DNA vaccine construct and evaluated it for the level of protection conferred to mice against infection with the virulent RH strain of T. gondii. RESULTS: TgASP1 appears to be a membrane protein located primarily at the tip of the T. gondii tachyzoite. Investigation of its potential as a DNA vaccine showed that it elicited strong humoral and cellular immune responses in mice, and that these responses were mediated by Th-1 cells. Mice immunized with the vaccine had greater levels of protection against mortality following challenge with T. gondii RH tachyzoites than did those immunized with PBS or the empty vector control. CONCLUSIONS: TgASP1 is a novel candidate DNA vaccine that merits further investigation.


Subject(s)
Antigens, Protozoan/immunology , Aspartic Acid Endopeptidases/immunology , Protozoan Vaccines/immunology , Toxoplasma/enzymology , Toxoplasma/immunology , Toxoplasmosis, Animal/prevention & control , Vaccines, DNA/immunology , Animals , Antibodies, Protozoan/blood , Antigens, Protozoan/genetics , Antigens, Protozoan/isolation & purification , Aspartic Acid Endopeptidases/genetics , Aspartic Acid Endopeptidases/isolation & purification , Disease Models, Animal , Escherichia coli/genetics , Female , Gene Expression , Leukocytes, Mononuclear/immunology , Mice , Mice, Inbred BALB C , Protozoan Vaccines/administration & dosage , Protozoan Vaccines/genetics , Protozoan Vaccines/isolation & purification , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Survival Analysis , Th1 Cells/immunology , Toxoplasma/genetics , Vaccines, DNA/administration & dosage , Vaccines, DNA/genetics , Vaccines, DNA/isolation & purification , Vaccines, Synthetic/administration & dosage , Vaccines, Synthetic/genetics , Vaccines, Synthetic/immunology , Vaccines, Synthetic/isolation & purification
20.
Phytochemistry ; 92: 16-32, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23701679

ABSTRACT

Aqueous extracts of thistle flowers from the genus Cynara-Cardueae tribe Cass. (Cynareae Less.), Asteraceae Dumortier-are traditionally used in the Mediterranean region for production of artisanal cheeses. This is because of the presence of aspartic proteases (APs) with the ability to coagulate milk. Plant APs, collectively known as phytepsins (EC 3.4.23.40), are bilobed endopeptidases present in an ample variety of plant species with activity mainly at acidic pHs, and have two aspartic residues located on each side of a catalytic cleft that are responsible for catalysis. The cleavage of the scissile peptide-bond occurs primarily between residues with large hydrophobic side-chains. Even when aspartylendopeptidase activity in plants is normally present at relatively low levels overall, the flowers of several species of the Cardueae tribe possess APs with extremely high specific activities in certain tissues. For this reason, in the last two decades, APs present in thistle flowers have been the subject of intensive study. Present here is a compilation of work that summarizes the known chemical and biological properties of these proteases, as well as their biomedical and biotechnological applications.


Subject(s)
Aspartic Acid Endopeptidases/isolation & purification , Cathepsins/isolation & purification , Centaurea/chemistry , Flowers/chemistry , Aspartic Acid Endopeptidases/chemistry , Aspartic Acid Endopeptidases/metabolism , Cathepsins/chemistry , Cathepsins/metabolism , Centaurea/enzymology , Cheese , Flowers/enzymology , Molecular Structure , Peptides/chemistry , Peptides/metabolism
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