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1.
World J Microbiol Biotechnol ; 37(8): 144, 2021 Aug 05.
Article in English | MEDLINE | ID: mdl-34351499

ABSTRACT

Spores of many species of the orders Bacillales and Clostridiales can be vectors for food spoilage, human diseases and intoxications, and biological warfare. Many agents are used for spore killing, including moist heat in an autoclave, dry heat at elevated temperatures, UV radiation at 254 and more recently 222 and 400 nm, ionizing radiation of various types, high hydrostatic pressures and a host of chemical decontaminants. An alternative strategy is to trigger spore germination, as germinated spores are much easier to kill than the highly resistant dormant spores-the so called "germinate to eradicate" strategy. Factors important to consider in choosing methods for spore killing include the: (1) cost; (2) killing efficacy and kinetics; (3) ability to decontaminate large areas in buildings or outside; and (4) compatibility of killing regimens with the: (i) presence of people; (ii) food quality; (iii) presence of significant amounts of organic matter; and (iv) minimal damage to equipment in the decontamination zone. This review will summarize research on spore killing and point out some common flaws which can make results from spore killing research questionable.


Subject(s)
Bacillales/growth & development , Clostridiales/growth & development , Disinfection/methods , Spores, Bacterial/growth & development , Bacillales/drug effects , Clostridiales/radiation effects , Disinfection/instrumentation , Hot Temperature , Humans , Spores, Bacterial/radiation effects , Ultraviolet Rays
2.
Sci Rep ; 11(1): 4573, 2021 02 25.
Article in English | MEDLINE | ID: mdl-33633359

ABSTRACT

Thermostability and substrate specificity of proteases are major factors in their industrial applications. rEla is a novel recombinant cysteine protease obtained from a thermophilic bacterium, Cohnella sp.A01 (PTCC No: 1921). Herein, we were interested in recombinant production and characterization of the enzyme and finding the novel features in comparison with other well-studied cysteine proteases. The bioinformatics analysis showed that rEla is allosteric cysteine protease from DJ-1/ThiJ/PfpI superfamily. The enzyme was heterologously expressed and characterized and the recombinant enzyme molecular mass was 19.38 kD which seems to be smaller than most of the cysteine proteases. rEla exhibited acceptable activity in broad pH and temperature ranges. The optimum activity was observed at 50℃ and pH 8 and the enzyme showed remarkable stability by keeping 50% of residual activity after 100 days storage at room temperature. The enzyme Km and Vmax values were 21.93 mM, 8 U/ml, respectively. To the best of our knowledge, in comparison with the other characterized cysteine proteases, rEla is the only reported cysteine protease with collagen specificity. The enzymes activity increases up to 1.4 times in the presence of calcium ion (2 mM) suggesting it as the enzyme's co-factor. When exposed to surfactants including Tween20, Tween80, Triton X-100 and SDS (1% and 4% v/v) the enzyme activity surprisingly increased up to 5 times.


Subject(s)
Bacillales/enzymology , Cysteine Proteases/metabolism , Amino Acid Sequence , Bacillales/drug effects , Bacillales/genetics , Binding Sites , Cysteine Proteases/chemistry , Cysteine Proteases/genetics , Enzyme Activation/drug effects , Enzyme Stability/drug effects , Hydrogen-Ion Concentration , Molecular Docking Simulation , Molecular Dynamics Simulation , Phylogeny , Protein Binding , Protein Conformation , Sequence Analysis, DNA , Structure-Activity Relationship , Temperature
3.
Lett Appl Microbiol ; 70(6): 407-412, 2020 Jun.
Article in English | MEDLINE | ID: mdl-32133659

ABSTRACT

Inactivation of Bacillales and Clostridiales spores is of interest, since some cause food spoilage and human diseases. A recent publication (mSphere 3: e00597-1, 2018) reported that glycerol monolaurate (GML) in a non-aqueous gel (GMLg) effectively killed spores of Bacillus subtilis, Bacillus cereus and Clostridioides difficile, and Bacillus anthracis spores to a lesser extent. We now show that (i) the B. subtilis spores prepared as in the prior work were impure; (ii) if spore viability was measured by diluting spores 1/10 in GMLg, serially diluting incubations 10-fold and spotting aliquots on recovery plates, there was no colony formation from the 1/10 to 1/1000 dilutions due to GMLg carryover, although thorough ethanol washes of incubated spores eliminated this problem and (iii) GMLg did not kill highly purified spores of B. subtilis, B. cereus, Bacillus megaterium and C. difficile in 3-20 h in the conditions used in the recent publication. GMLg also gave no killing of crude B. subtilis spores prepared as in the recent publication in 5 h but gave ~1·5 log killing at 24 h. Thus, GMLg does not appear to be an effective sporicide, although the gel likely inhibits spore germination and could kill spores somewhat upon long incubations. SIGNIFICANCE AND IMPACT OF THE STUDY: Given potential deleterious effects of spores of Bacillales and Clostridiales, there is an ongoing interest in new ways of spore killing. A recent paper (mSphere 3: e00597-1, 2018) reported that glycerol monolaurate (GML) in a non-aqueous gel (GMLg) effectively killed spores of many species. We now find that (i) the Bacillus subtilis spores prepared as in the previous report were impure and (ii) GMLg gave no killing of purified spores of Bacillales and Clostridiales species in ≤5 h under the published conditions. Thus, GMLg is not an effective sporicide, though may prevent spore germination or kill germinated spores.


Subject(s)
Anti-Bacterial Agents/pharmacology , Bacillales/drug effects , Clostridiales/drug effects , Laurates/pharmacology , Monoglycerides/pharmacology , Spores, Bacterial/drug effects , Spores, Bacterial/growth & development , Bacillales/growth & development , Bacillus cereus/drug effects , Bacillus megaterium/drug effects , Bacillus subtilis/drug effects , Clostridiales/growth & development , Clostridioides difficile/drug effects , Food Microbiology , Gels/pharmacology
4.
ACS Chem Biol ; 14(8): 1727-1736, 2019 08 16.
Article in English | MEDLINE | ID: mdl-31310497

ABSTRACT

Bacterial resistance represents a major health threat worldwide, and the development of new therapeutics, including innovative antibiotics, is urgently needed. We describe a discovery platform, centered on in silico screening and in vivo bioluminescence resonance energy transfer in yeast cells, for the identification of new antimicrobials that, by targeting the protein-protein interaction between the ß'-subunit and the initiation factor σ70 of bacterial RNA polymerase, inhibit holoenzyme assembly and promoter-specific transcription. Out of 34 000 candidate compounds, we identified seven hits capable of interfering with this interaction. Two derivatives of one of these hits proved to be effective in inhibiting transcription in vitro and growth of the Gram-positive pathogens Staphylococcus aureus and Listeria monocytogenes. Upon supplementation of a permeability adjuvant, one derivative also effectively inhibited Escherichia coli growth. On the basis of the chemical structures of these inhibitors, we generated a ligand-based pharmacophore model that will guide the rational discovery of increasingly effective antibacterial agents.


Subject(s)
Anti-Bacterial Agents/pharmacology , Bacterial Proteins/antagonists & inhibitors , DNA-Directed RNA Polymerases/antagonists & inhibitors , Indoles/pharmacology , Sigma Factor/antagonists & inhibitors , Anti-Bacterial Agents/toxicity , Bacillales/drug effects , Bacterial Proteins/metabolism , DNA-Directed RNA Polymerases/metabolism , Drug Discovery , Erythrocytes/drug effects , Escherichia coli/drug effects , Hemolysis/drug effects , Holoenzymes/metabolism , Humans , Indoles/toxicity , Ligands , Microbial Sensitivity Tests , Proof of Concept Study , Protein Binding/drug effects , Saccharomyces cerevisiae/drug effects , Sigma Factor/metabolism
5.
Int. microbiol ; 22(1): 41-48, mar. 2019. graf, tab
Article in English | IBECS | ID: ibc-184812

ABSTRACT

Microalgal-bacterial co-cultures were employed for the treatment of artificially prepared metal-rich wastewaters in this study. For the purpose, highly metal-resistant microalgal and bacterial species were isolated from a leading wastewater channel flowing through Lahore, Pakistan, and characterized at the molecular level. The microbial identities were proved after BLAST analysis. The microalgal (Chlorella vulgaris-BH1) and bacterial (Exiguobacterium profundum-BH2) species were then co-cultured in five different proportions. Five different proportions of potentially mutualistic microbial co-cultures (comprising of microalgal to bacterial cells in ratios of 1:3, 2:3, 3:3, 3:1, and 3:2) prepared thus were employed to remediate artificially prepared metal-loaded wastewaters. Three randomly selected toxic metals (Cu, Cr, and Ni) were used in this study to prepare metal-rich wastewaters. The microalgal-bacterial co-cultures were then exposed independently to the wastewaters containing 100 ppm of each of the above mentioned metals. The inoculated wastewaters were incubated maximally for a period of 15 days. The metal uptake was noted periodically after every 5 days. The results of the present study depicted that maximally about 78.7, 56.4, and 80% of Cu, Cr, and Ni were removed, respectively after an incubation period of 15 days. The microbial co-culture consisting of microalgal to bacterial cells in a ratio of 3:1 showed the highest remedial potential. The findings of the present study will be helpful in developing effective microalgal-bacterial consortia for economical, efficient, and environment-friendly rehabilitation of the polluted sites


No disponible


Subject(s)
Bacillales/metabolism , Chlorella vulgaris/metabolism , Coculture Techniques , Metals/metabolism , Water Pollutants, Chemical/metabolism , Bacillales/drug effects , Bacillales/growth & development , Chlorella vulgaris/drug effects , Chlorella vulgaris/growth & development , Water Pollutants, Chemical/toxicity , Drug Resistance , Metals/toxicity , Pakistan
6.
Int Microbiol ; 22(1): 41-48, 2019 Mar.
Article in English | MEDLINE | ID: mdl-30810930

ABSTRACT

Microalgal-bacterial co-cultures were employed for the treatment of artificially prepared metal-rich wastewaters in this study. For the purpose, highly metal-resistant microalgal and bacterial species were isolated from a leading wastewater channel flowing through Lahore, Pakistan, and characterized at the molecular level. The microbial identities were proved after BLAST analysis. The microalgal (Chlorella vulgaris-BH1) and bacterial (Exiguobacterium profundum-BH2) species were then co-cultured in five different proportions. Five different proportions of potentially mutualistic microbial co-cultures (comprising of microalgal to bacterial cells in ratios of 1:3, 2:3, 3:3, 3:1, and 3:2) prepared thus were employed to remediate artificially prepared metal-loaded wastewaters. Three randomly selected toxic metals (Cu, Cr, and Ni) were used in this study to prepare metal-rich wastewaters. The microalgal-bacterial co-cultures were then exposed independently to the wastewaters containing 100 ppm of each of the above mentioned metals. The inoculated wastewaters were incubated maximally for a period of 15 days. The metal uptake was noted periodically after every 5 days. The results of the present study depicted that maximally about 78.7, 56.4, and 80% of Cu, Cr, and Ni were removed, respectively after an incubation period of 15 days. The microbial co-culture consisting of microalgal to bacterial cells in a ratio of 3:1 showed the highest remedial potential. The findings of the present study will be helpful in developing effective microalgal-bacterial consortia for economical, efficient, and environment-friendly rehabilitation of the polluted sites.


Subject(s)
Bacillales/metabolism , Chlorella vulgaris/metabolism , Coculture Techniques , Metals/metabolism , Wastewater/microbiology , Water Pollutants, Chemical/metabolism , Bacillales/drug effects , Bacillales/growth & development , Chlorella vulgaris/drug effects , Chlorella vulgaris/growth & development , Drug Resistance , Metals/toxicity , Pakistan , Water Pollutants, Chemical/toxicity
7.
J Appl Microbiol ; 126(2): 348-358, 2019 Feb.
Article in English | MEDLINE | ID: mdl-30106202

ABSTRACT

The purpose of this article is to highlight some areas of research with spores of bacteria of Firmicute species in which the methodology too commonly used is not optimal and generates misleading results. As a consequence, conclusions drawn from data obtained are often flawed or not appropriate. Topics covered in the article include the following: (i) the importance of using well-purified bacterial spores in studies on spore resistance, composition, killing, disinfection and germination; (ii) methods for obtaining good purification of spores of various species; (iii) appropriate experimental approaches to determine mechanisms of spore resistance and spore killing by a variety of agents, as well as known mechanisms of spore resistance and killing; (iv) common errors made in drawing conclusions about spore killing by various agents, including failure to neutralize chemical agents before plating for viable spore enumeration, and equating correlations between changes in spore properties accompanying spore killing with causation. It is hoped that a consideration of these topics will improve the quality of spore research going forward.


Subject(s)
Bacillales/drug effects , Clostridiales/drug effects , Spores, Bacterial/drug effects , Drug Resistance, Bacterial , Spores, Bacterial/isolation & purification
8.
BMC Pharmacol Toxicol ; 19(1): 7, 2018 02 13.
Article in English | MEDLINE | ID: mdl-29439722

ABSTRACT

BACKGROUND: Tomatidine (TO) is a plant steroidal alkaloid that possesses an antibacterial activity against the small colony variants (SCVs) of Staphylococcus aureus. We report here the spectrum of activity of TO against other species of the Bacillales and the improved antibacterial activity of a chemically-modified TO derivative (FC04-100) against Listeria monocytogenes and antibiotic multi-resistant S. aureus (MRSA), two notoriously difficult-to-kill microorganisms. METHODS: Bacillus and Listeria SCVs were isolated using a gentamicin selection pressure. Minimal inhibitory concentrations (MICs) of TO and FC04-100 were determined by a broth microdilution technique. The bactericidal activity of TO and FC04-100 used alone or in combination with an aminoglycoside against planktonic bacteria was determined in broth or against bacteria embedded in pre-formed biofilms by using the Calgary Biofilm Device. Killing of intracellular SCVs was determined in a model with polarized pulmonary cells. RESULTS: TO showed a bactericidal activity against SCVs of Staphylococcus aureus, Bacillus cereus, B. subtilis and Listeria monocytogenes with MICs of 0.03-0.12 µg/mL. The combination of an aminoglycoside and TO generated an antibacterial synergy against their normal phenotype. In contrast to TO, which has no relevant activity by itself against Bacillales of the normal phenotype (MIC > 64 µg/mL), the TO analog FC04-100 showed a MIC of 8-32 µg/mL. Furthermore, FC04-100 showed a strong bactericidal activity against L. monocytogenes SCVs in kill kinetics experiments, while TO did not. The addition of FC04-100 (4 µg/mL) to a cefalexin:kanamycin (3:2) combination improved the activity of the combination by 32 fold against cefalexin and kanamycin-resistant MRSA strains. In combination with gentamicin, FC04-100 also exhibited a strong bactericidal activity against biofilm-embedded S. aureus. Also, FC04-100 and TO showed comparable intracellular killing of S. aureus SCVs. CONCLUSIONS: Chemical modifications of TO allowed improvement of its antibacterial activity against prototypical S. aureus and of its bactericidal activity against L. monocytogenes. Antibacterial activities against such prominent pathogens could be useful to prevent Listeria contamination in the food chain or as treatment for MRSA infections.


Subject(s)
Anti-Bacterial Agents/pharmacology , Bacillales/drug effects , Tomatine/analogs & derivatives , Bacillales/growth & development , Drug Resistance, Bacterial , Microbial Sensitivity Tests , Tomatine/pharmacology
9.
Int J Biol Macromol ; 103: 89-98, 2017 Oct.
Article in English | MEDLINE | ID: mdl-28501604

ABSTRACT

A catalase-producing thermophilic bacterium, Ureibacillus thermosphaericus FZSF03, was isolated from high-temperature compost. Catalase production in this strain increased 31 times and reached 57,630U/mL after optimization in a shake flask, which might represent the highest catalase activity level among reported wild strains. This catalase was further purified and identified. The purified enzyme showed a specific activity of 219,360U/mg, higher than many other catalases. The molecular weight of this enzyme is 52kDa according to sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), and the enzyme was identified as a monofunctional haeme catalase of Ureibacillus thermosphaericus by liquid chromatography-mass spectrometry (LC-MS)/MS. The optimal reaction temperature for this catalase was found to be 60°C. Stability was observed at 60°C and at a pH of 10.0, indicating the superiority of this enzyme at a high temperature and under alkaline conditions. Therefore, this catalase is a prospective candidate for industrial production and applications. The gene encoding this catalase is 1503bp. As the amino acid sequence shows low similarity with other catalases, we suggest that this is a novel monofunctional haeme catalase.


Subject(s)
Bacillales/enzymology , Catalase/biosynthesis , Catalase/genetics , Temperature , Amino Acid Sequence , Bacillales/drug effects , Bacillales/genetics , Bacillales/physiology , Carbon/pharmacology , Catalase/isolation & purification , Catalase/metabolism , Cloning, Molecular , Dose-Response Relationship, Drug , Fermentation/drug effects , Hydrogen-Ion Concentration , Kinetics , Nitrogen/pharmacology
10.
BMC Genomics ; 17(1): 882, 2016 11 07.
Article in English | MEDLINE | ID: mdl-27821051

ABSTRACT

BACKGROUND: Gram-positive bacteria of the Bacillales are important producers of antimicrobial compounds that might be utilized for medical, food or agricultural applications. Thanks to the wide availability of whole genome sequence data and the development of specific genome mining tools, novel antimicrobial compounds, either ribosomally- or non-ribosomally produced, of various Bacillales species can be predicted and classified. Here, we provide a classification scheme of known and putative antimicrobial compounds in the specific context of Bacillales species. RESULTS: We identify and describe known and putative bacteriocins, non-ribosomally synthesized peptides (NRPs), polyketides (PKs) and other antimicrobials from 328 whole-genome sequenced strains of 57 species of Bacillales by using web based genome-mining prediction tools. We provide a classification scheme for these bacteriocins, update the findings of NRPs and PKs and investigate their characteristics and suitability for biocontrol by describing per class their genetic organization and structure. Moreover, we highlight the potential of several known and novel antimicrobials from various species of Bacillales. CONCLUSIONS: Our extended classification of antimicrobial compounds demonstrates that Bacillales provide a rich source of novel antimicrobials that can now readily be tapped experimentally, since many new gene clusters are identified.


Subject(s)
Anti-Infective Agents/metabolism , Antibiosis , Bacillales/physiology , Bacteriocins/biosynthesis , Anti-Infective Agents/pharmacology , Bacillales/classification , Bacillales/drug effects , Bacteriocins/genetics , Bacteriocins/pharmacology , Genome, Bacterial , Multigene Family , Peptide Biosynthesis, Nucleic Acid-Independent , Peptides/genetics , Peptides/metabolism , Peptides/pharmacology , Phylogeny , Polyketides/metabolism , Polyketides/pharmacology , Protein Processing, Post-Translational , Ribosomes/metabolism
11.
Bioprocess Biosyst Eng ; 38(10): 1993-2001, 2015 Oct.
Article in English | MEDLINE | ID: mdl-26216317

ABSTRACT

The impact of lignocellulose-derived inhibitors on the cell growth and D-lactic production of Sporolactobacillus inulinus YBS1-5 was investigated. At high concentrations, both furans and phenolics, such as furfural, HMF, syringaldehyde and vanillin, affected cell growth and D-lactic acid production and syringaldehyde exhibited the highest. Further experiments showed that only vanillin caused cellular membrane damage. Based on the Biolog approach, in vivo studies on intact S. inulinus cells indicated that phenolics had a stronger inhibitory effect than furan derivatives on the metabolic activity of the concerned substrates related with the key enzymes of D-lactic acid fermentation. The direct in vitro inhibitory effect of the model compounds on the four key enzymes displayed similar patterns. Syringaldehyde was the strongest inhibitor. In general, comparison with published results for other microorganisms indicated that strain YBS1-5 was a robust microorganism against inhibitors of lignocellulose hydrolysate. Notably, in concentrated corn stover hydrolysate, S. inulinus YBS1-5 produced 70.7 g/L D-lactic acid, which was 87.7 % of the yield from the control experiment. However, the fermentation time was prolonged 36 h. In order to improve fermentation rate, a detoxification technology or more robust mutant to phenolics especially syringaldehyde should be developed.


Subject(s)
Bacillales/drug effects , Bacillales/physiology , Furans/administration & dosage , Lactic Acid/biosynthesis , Phenols/administration & dosage , Zea mays/microbiology , Bacillales/classification , Bacillales/cytology , Cell Proliferation/drug effects , Cell Proliferation/physiology , Dose-Response Relationship, Drug , Furans/chemistry , Lignin/chemistry , Phenols/chemistry , Species Specificity
12.
Mar Drugs ; 13(4): 2526-40, 2015 Apr 22.
Article in English | MEDLINE | ID: mdl-25913707

ABSTRACT

Eleven new polyphenols namely spiromastols A-K (1-11) were isolated from the fermentation broth of a deep sea-derived fungus Spiromastix sp. MCCC 3A00308. Their structures were determined by extensive NMR data and mass spectroscopic analysis in association with chemical conversion. The structures are classified as diphenyl ethers, diphenyl esters and isocoumarin derivatives, while the n-propyl group in the analogues is rarely found in natural products. Compounds 1-3 exhibited potent inhibitory effects against a panel of bacterial strains, including Xanthomanes vesicatoria, Pseudomonas lachrymans, Agrobacterium tumefaciens, Ralstonia solanacearum, Bacillus thuringensis, Staphylococcus aureus and Bacillus subtilis, with minimal inhibitory concentration (MIC) values ranging from 0.25 to 4 µg/mL. The structure-activity relationships are discussed, while the polychlorinated analogues 1-3 are assumed to be a promising structural model for further development as antibacterial agents.


Subject(s)
Anti-Bacterial Agents/isolation & purification , Aquatic Organisms/chemistry , Ascomycota/chemistry , Chlorophenols/isolation & purification , Drug Discovery , Halogenated Diphenyl Ethers/isolation & purification , Phenyl Ethers/isolation & purification , Polyphenols/isolation & purification , Altitude , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , Atlantic Ocean , Bacillales/drug effects , Bacillales/growth & development , Chlorophenols/chemistry , Chlorophenols/pharmacology , Circular Dichroism , Fermentation , Gram-Negative Aerobic Bacteria/drug effects , Gram-Negative Aerobic Bacteria/growth & development , Halogenated Diphenyl Ethers/chemistry , Halogenated Diphenyl Ethers/pharmacology , Halogenation , Magnetic Resonance Spectroscopy , Methylation , Microbial Sensitivity Tests , Molecular Structure , Phenyl Ethers/chemistry , Phenyl Ethers/pharmacology , Polyphenols/chemistry , Polyphenols/pharmacology , Soil Microbiology , Spectrometry, Mass, Electrospray Ionization , Structure-Activity Relationship
13.
Appl Biochem Biotechnol ; 173(5): 1236-49, 2014 Jul.
Article in English | MEDLINE | ID: mdl-24781982

ABSTRACT

A biosurfactant-producing thermophile was isolated from the Kahrizak landfill of Tehran and identified as a bacterium belonging to the genus Aneurinibacillus. A thermostable lipopeptide-type biosurfactant was purified from the culture medium of this bacterium and showed stability in the temperature range of 20-90 °C and pH range of 5-10. The produced biosurfactant could reduce the surface tension of water from 72 to 43 mN/m with a CMC of 1.21 mg/mL. The strain growing at a temperature of 45 °C produces a substantial amount of 5 g/L of biosurfactant in the medium supplemented with sunflower oil as the sole carbon source. Response surface methodology was employed to optimize the biosurfactant production using sunflower oil, sodium nitrate, and yeast extract as variables. The optimization resulted in 6.75 g/L biosurfactant production, i.e., 35% improved as compared to the unoptimized condition. Thin-layer chromatography, FTIR spectroscopy, 1H-NMR spectroscopy, and biochemical composition analysis confirmed the lipopeptide structure of the biosurfactant.


Subject(s)
Bacillales/chemistry , Cities , Lipopeptides/isolation & purification , Surface-Active Agents/isolation & purification , Waste Disposal Facilities , Bacillales/drug effects , Bacillales/growth & development , Bacillales/metabolism , Carbon/pharmacology , Drug Stability , Hydrogen-Ion Concentration , Kinetics , Lipopeptides/chemistry , Lipopeptides/metabolism , Species Specificity , Surface-Active Agents/chemistry , Surface-Active Agents/metabolism , Temperature
14.
Appl Environ Microbiol ; 80(4): 1482-8, 2014 Feb.
Article in English | MEDLINE | ID: mdl-24362420

ABSTRACT

The genus Exiguobacterium can adapt readily to, and survive in, diverse environments. Our study demonstrated that Exiguobacterium sp. strain S3-2, isolated from marine sediment, is resistant to five antibiotics. The plasmid pMC1 in this strain carries seven putative resistance genes. We functionally characterized these resistance genes in Escherichia coli, and genes encoding dihydrofolate reductase and macrolide phosphotransferase were considered novel resistance genes based on their low similarities to known resistance genes. The plasmid G+C content distribution was highly heterogeneous. Only the G+C content of one block, which shared significant similarity with a plasmid from Exiguobacterium arabatum, fit well with the mean G+C content of the host. The remainder of the plasmid was composed of mobile elements with a markedly lower G+C ratio than the host. Interestingly, five mobile elements located on pMC1 showed significant similarities to sequences found in pathogens. Our data provided an example of the link between resistance genes in strains from the environment and the clinic and revealed the aggregation of antibiotic resistance genes in bacteria isolated from fish farms.


Subject(s)
Anti-Bacterial Agents/pharmacology , Bacillales/drug effects , Bacillales/isolation & purification , Drug Resistance, Multiple, Bacterial , Geologic Sediments/microbiology , Animals , Aquaculture , Bacillales/genetics , Base Composition , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , Escherichia coli/genetics , Interspersed Repetitive Sequences , Molecular Sequence Data , Plasmids , Sequence Analysis, DNA
15.
Appl Biochem Biotechnol ; 171(1): 246-60, 2013 Sep.
Article in English | MEDLINE | ID: mdl-23832861

ABSTRACT

Exiguobacterium sp. VSG-1 was isolated from the soil sample and characterized for the production of lignocellulolytic enzymes. Production of these enzymes by the strain VSG-1 was carried out using steam-exploded sugarcane bagasse (SCB) and found to secrete cellulase, pectinase, mannanase, xylanase, and tannase. The growth and enzyme production were found to be optimum at pH 9.0 and 37 °C. Upon steam explosion of SCB, the cellulose increased by 42 %, whereas hemicelluloses and lignin decreased by 40 and 62 %, respectively. Enzymatic hydrolysis of steam-exploded SCB yielded 640 g/l of total sugars. Fermentation of sugars produced from pretreated SCB was carried out by using Saccharomyces cerevisiae at pH 5.0 and 30 °C. The alcohol produced was calculated and found to be 62.24 g/l corresponding to 78 % of the theoretical yield of ethanol. Hence, the strain VSG-1 has an industrial importance for the production of fermentable sugars for biofuels.


Subject(s)
Bacillales/enzymology , Biofuels/microbiology , Cellulose/metabolism , Ethanol/metabolism , Fermentation , Lignin/metabolism , Saccharum/chemistry , Bacillales/drug effects , Bacillales/growth & development , Bacillales/metabolism , Dose-Response Relationship, Drug , Glucose/metabolism , Hydrogen-Ion Concentration , Saccharomyces cerevisiae/metabolism , Sodium Chloride/pharmacology , Temperature
16.
Extremophiles ; 17(3): 421-31, 2013 May.
Article in English | MEDLINE | ID: mdl-23525943

ABSTRACT

The North-Western part of Argentina is particularly rich in wetlands located in the Puna in an altitude between 3,600 and 4,600 m above sea level. Most of these high-altitude Andean lakes are inhospitable areas due to extreme habitat conditions such as high contents of toxic elements, particularly arsenic. Exiguobacterium sp. S17, isolated from stromatolites in Laguna Socompa, exhibited remarkable tolerance to high arsenic concentration, i.e., it tolerated arsenic concentration such as 10 mM of As(III) and 150 mM of As(V). A proteomics approach was conducted to reveal the mechanisms that provide the observed outstanding resistance of Exiguobacterium sp. S17 against arsenic. A comparative analysis of S17, exposed and unexposed to arsenic revealed 25 differentially expressed proteins. Identification of these proteins was performed by MALDI-TOF/MS revealing upregulation of proteins involved in energy metabolism, stress, transport, and in protein synthesis being expressed under arsenic stress. To our knowledge, this work represents the first proteomic study of arsenic tolerance in an Exiguobacterium strain.


Subject(s)
Adaptation, Physiological/genetics , Arsenic/pharmacology , Bacillales/metabolism , Proteomics , Altitude , Argentina , Bacillales/drug effects , Bacillales/genetics , Bacterial Proteins/metabolism , Ecosystem , Geologic Sediments/microbiology , Lakes/microbiology , Stress, Physiological
17.
Microbiology (Reading) ; 158(Pt 12): 3072-3082, 2012 Dec.
Article in English | MEDLINE | ID: mdl-23103974

ABSTRACT

Antibiotic production as a defence mechanism is a characteristic of a wide variety of organisms. In natural evolutionary adaptation, cellular events such as sporulation, biofilm formation and resistance to antibiotics enable some micro-organisms to survive environmental and antibiotic stress conditions. The two antimicrobial cyclic peptides in this study, gramicidin S (GS) from Aneurinibacillus migulanus and the lipopeptide surfactin (Srf) from Bacillus subtilis, have been shown to affect both membrane and intercellular components of target organisms. Many functions, other than that of antimicrobial activity, have been assigned to Srf. We present evidence that an additional function may exist for Srf, namely that of a detoxifying agent that protects its producer from the lytic activity of GS. We observed that Srf producers were more resistant to GS and could be co-cultured with the GS producer. Furthermore, exogenous Srf antagonized the activity of GS against both Srf-producing and non-producing bacterial strains. A molecular interaction between the anionic Srf and the cationic GS was observed with circular dichroism and electrospray MS. Our results indicate that the formation of an inactive complex between GS and Srf supports resistance towards GS, with the anionic Srf forming a chemical barrier to protect its producer. This direct detoxification combined with the induction of protective stress responses in B. subtilis by Srf confers resistance toward GS from A. migulanus and allows survival in mixed cultures.


Subject(s)
Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/pharmacokinetics , Antibiosis , Bacillales/drug effects , Gramicidin/pharmacokinetics , Inactivation, Metabolic , Lipopeptides/pharmacology , Peptides, Cyclic/pharmacology , Anti-Bacterial Agents/metabolism , Bacillales/metabolism , Circular Dichroism , Drug Resistance, Bacterial , Gramicidin/metabolism , Lipopeptides/metabolism , Peptides, Cyclic/metabolism , Protein Binding , Spectrometry, Mass, Electrospray Ionization
18.
J Med Food ; 15(9): 835-9, 2012 Sep.
Article in English | MEDLINE | ID: mdl-22871061

ABSTRACT

The chemical composition, antimicrobial activity, total phenol content, total antioxidant activity, and total oxidant status of the essential oil from Micromeria congesta Boiss. & Hausskn. ex Boiss. were investigated. Steam distillation was used to obtain the essential oil, and the chemical analyses were performed by gas chromatography-mass spectrometry. The antimicrobial activity was tested by an agar disc diffusion method against the tested microorganisms: Bacillus subtilis NRRL B-744, Bacillus cereus NRRL B-3711, Staphylococcus aureus ATCC 12598, S. aureus ATCC 25923, S. aureus ATCC 25933, Escherichia coli 0157H7, E. coli ATCC25922, Micrococcus luteus NRLL B-4375, Enterococcus faecalis ATCC 19433, Proteus vulgaris RSKK 96026, and Yersinia enterecolitica RSKK 1501. The major compounds found in volatiles of M. congesta were piperitone oxide, linalool oxide, veratrole, pulegone, dihydro carvone, naphthalene, iso-menthone, para-menthone, and cyclohexanone. Compared to that of reference antibiotics, the antibacterial activity of the essential oil is considered as significant. Results showed that M. congesta has the potential for being used in food and medicine depending on its antioxidant and antibacterial activity.


Subject(s)
Anti-Infective Agents/pharmacology , Antioxidants/pharmacology , Lamiaceae/chemistry , Oils, Volatile/pharmacology , Plant Components, Aerial/chemistry , Anti-Infective Agents/chemistry , Anti-Infective Agents/isolation & purification , Antioxidants/chemistry , Antioxidants/isolation & purification , Bacillales/drug effects , Bacillales/growth & development , Disk Diffusion Antimicrobial Tests , Ethnopharmacology , Food Preservatives/chemistry , Food Preservatives/isolation & purification , Food Preservatives/pharmacology , Gram-Negative Bacteria/drug effects , Gram-Negative Bacteria/growth & development , Hydrocarbons, Cyclic/analysis , Lamiaceae/growth & development , Oils, Volatile/chemistry , Oils, Volatile/isolation & purification , Phenols/analysis , Plant Components, Aerial/growth & development , Preservatives, Pharmaceutical/chemistry , Preservatives, Pharmaceutical/isolation & purification , Preservatives, Pharmaceutical/pharmacology , Terpenes/analysis , Turkey
19.
Antimicrob Agents Chemother ; 56(7): 3563-7, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22547628

ABSTRACT

The cfr gene encodes the Cfr methyltransferase that methylates a single adenine in the peptidyl transferase region of bacterial ribosomes. The methylation provides resistance to several classes of antibiotics that include drugs of clinical and veterinary importance. This paper describes a first step toward elucidating natural residences of the worrisome cfr gene and functionally similar genes. Three cfr-like genes from the order Bacillales were identified from BLAST searches and cloned into plasmids under the control of an inducible promoter. Expression of the genes was induced in Escherichia coli, and MICs for selected antibiotics indicate that the cfr-like genes confer resistance to PhLOPSa (phenicol, lincosamide, oxazolidinone, pleuromutilin, and streptogramin A) antibiotics in the same way as the cfr gene. In addition, modification at A2503 on 23S rRNA was confirmed by primer extension. Finally, expression of the Cfr-like proteins was verified by SDS gel electrophoresis of whole-cell extracts. The work shows that cfr-like genes exist in the environment and that Bacillales are natural residences of cfr-like genes.


Subject(s)
Anti-Bacterial Agents/pharmacology , Bacillales/drug effects , Bacillales/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Diterpenes/pharmacology , Drug Resistance, Microbial , Electrophoresis, Polyacrylamide Gel , Escherichia coli/drug effects , Lincosamides/pharmacology , Microbial Sensitivity Tests , Oxazolidinones/pharmacology , Polycyclic Compounds , Streptogramin A/pharmacology , Pleuromutilins
20.
Acta Pharm ; 61(2): 171-85, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21684845

ABSTRACT

A series of 6-aryl-5-cyano-2-thiouracil derivatives (1a-d) was synthesized by the reaction of ethyl cyanoacetate with thiourea and aldehydes. These products were used as intermediate compounds for the synthesis of a number of thiouracil derivatives (2a-d to 10a-d). All compounds were screened for antibacterial and antifungal activities. Some of the prepared compounds, 6-(4-fluorophenyl)-4-oxo-2-thioxo-1,2,3,4-tetrahydropyrimidine-5-carboxamide (2a), 4-oxo-2-thioxo-6-(3,4,5-trimethoxyphenyl)-1,2,3,4-tetrahydropyrimidine-5-carboxamide (2d), 6-(4-fluorophenyl)-4-hydrazino-2-thioxo-1,2-dihydropyrimidine-5-cabonitrile (7a) and 4-hydrazino-2-thioxo-6-(3,4,5-trimethoxyphenyl)-1,2-dihydropyrimidine-5-carbonitrile (7d) revealed promising antimicrobial activity.


Subject(s)
Anti-Bacterial Agents/chemical synthesis , Anti-Bacterial Agents/pharmacology , Antifungal Agents/chemical synthesis , Antifungal Agents/pharmacology , Nitriles/chemical synthesis , Nitriles/pharmacology , Uracil/analogs & derivatives , Acetates/chemistry , Aldehydes/chemistry , Anti-Bacterial Agents/chemistry , Antifungal Agents/chemistry , Bacillales/drug effects , Chemical Phenomena , Disk Diffusion Antimicrobial Tests , Drug Design , Escherichia coli/drug effects , Indicators and Reagents/chemistry , Magnetic Resonance Spectroscopy , Mass Spectrometry , Mitosporic Fungi/drug effects , Molecular Structure , Nitriles/chemistry , Spectrophotometry, Infrared , Structure-Activity Relationship , Thiourea/chemistry , Transition Temperature , Uracil/chemistry
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