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1.
Int J Mol Sci ; 22(9)2021 May 07.
Article in English | MEDLINE | ID: mdl-34066922

ABSTRACT

Human gut microbiota harbors numerous microbial species with molecular enzymatic potential that impact on the eubiosis/dysbiosis and health/disease balances. Microbiota species isolation and description of their specific molecular features remain largely unexplored. In the present study, we focused on the cultivation and selection of species able to tolerate or biodegrade the endocrine disruptor bisphenol A (BPA), a xenobiotic extensively found in food plastic containers. Chemical xenobiotic addition methods for the directed isolation, culturing, Whole Genome Sequencing (WGS), phylogenomic identification, and specific gene-encoding searches have been applied to isolate microorganisms, assess their BPA metabolization potential, and describe encoded catabolic pathways. BPA-tolerant strains were isolated from 30% of infant fecal microbial culture libraries analyzed. Most isolated strains were phylogenetically related to the operational taxonomic group Bacillus amyloliquefaciens spp. Importantly, WGS analysis of microbial representative strain, Bacillus sp. AM1 identified the four complete molecular pathways involved on BPA degradation indicating its versatility and high potential to degrade BPA. Pathways for Exopolysaccharide (EPS) and Polyhydroxyalkanates (PHA) biopolymer synthesis were also identified and phenotypically confirmed by transmission electronic microscopy (TEM). These microbial biopolymers could generally contribute to capture and/or deposit xenobiotics.


Subject(s)
Bacillus/metabolism , Benzhydryl Compounds/metabolism , Gastrointestinal Microbiome , Phenols/metabolism , Signal Transduction , Anti-Bacterial Agents/pharmacology , Bacillus/cytology , Bacillus/genetics , Bacillus/ultrastructure , Benzhydryl Compounds/chemistry , Biodegradation, Environmental , Genome, Bacterial , Humans , Microbial Sensitivity Tests , Phenols/chemistry , Phylogeny , RNA, Ribosomal, 16S/genetics
2.
Bull Exp Biol Med ; 171(2): 234-237, 2021 May.
Article in English | MEDLINE | ID: mdl-34173101

ABSTRACT

We studied the influence of microorganisms isolated from permafrost on the psychophysiological parameters of birds. Significant effect of the microbiota of the paleoecosystems of the cryolithozone on locomotor activity, psycho-emotional state, and psychophysiological lateralization of brain function of Gallus gallus chickens. The involvement of both the autonomic and the higher central nervous systems in this regulatory process via synthesis of neuropeptides by symbionts is discussed.


Subject(s)
Behavior, Animal/physiology , Chickens/physiology , Microbiota/physiology , Permafrost/microbiology , Animals , Bacillus/isolation & purification , Bacillus/ultrastructure , Chickens/microbiology , Ecosystem , Locomotion/physiology , Nervous System Physiological Phenomena , Paleontology
3.
Int J Food Microbiol ; 349: 109231, 2021 Jul 02.
Article in English | MEDLINE | ID: mdl-34022614

ABSTRACT

Bacterial spores are important in food processing due to their ubiquity, resistance to high temperature and chemical inactivation. This work aims to study the effect of ultraviolet C (UVC) on the spores of Bacillus subtilis and Bacillus velezensis at a molecular and individual level to guide in deciding on the right parameters that must be applied during the processing of liquid foods. The spores were treated with UVC using phosphate buffer saline (PBS) as a suspension medium and their lethality rate was determined for each sample. Purified spore samples of B. velezensis and B. subtilis were treated under one pass in a UVC reactor to inactivate the spores. The resistance pattern of the spores to UVC treatment was determined using dipicolinic acid (Ca-DPA) band of spectral analysis obtained from Raman spectroscopy. Flow cytometry analysis was also done to determine the effect of the UVC treatment on the spore samples at the molecular level. Samples were processed for SEM and the percentage spore surface hydrophobicity was also determined using the Microbial Adhesion to Hydrocarbon (MATH) assay to predict the adhesion strength to a stainless-steel surface. The result shows the maximum lethality rate to be 6.5 for B. subtilis strain SRCM103689 (B47) and highest percentage hydrophobicity was 54.9% from the sample B. velezensis strain LPL-K103 (B44). The difference in surface hydrophobicity for all isolates was statistically significant (P < 0.05). Flow cytometry analysis of UVC treated spore suspensions clarifies them further into sub-populations unaccounted for by plate counting on growth media. The Raman spectroscopy identified B4002 as the isolate possessing the highest concentration of Ca-DPA. The study justifies the critical role of Ca-DPA in spore resistance and the possible sub-populations after UVC treatment that may affect product shelf-life and safety. UVC shows a promising application in the inactivation of resistant spores though there is a need to understand the effects at the molecular level to design the best parameters during processing.


Subject(s)
Bacillus subtilis/radiation effects , Bacillus/radiation effects , Milk/microbiology , Pasteurization/methods , Spores, Bacterial/radiation effects , Animals , Bacillus/physiology , Bacillus/ultrastructure , Bacillus subtilis/physiology , Bacillus subtilis/ultrastructure , Bacterial Adhesion/radiation effects , Hydrophobic and Hydrophilic Interactions/radiation effects , Microbial Viability/radiation effects , Spores, Bacterial/physiology , Spores, Bacterial/ultrastructure , Ultraviolet Rays
4.
Int J Biol Macromol ; 181: 410-417, 2021 Jun 30.
Article in English | MEDLINE | ID: mdl-33775761

ABSTRACT

Polyhydroxybutyrate (PHB) is a biodegradable plastic that can be used as an alternative to petrochemical-based plastics. PHB is produced by various microorganisms such as Ralstonia, Halomonas, and Bacillus species. However, there are very few strains that produce PHB using xylose, an abundant and inexpensive carbon source. In this study, ten xylose-utilizing PHB producers isolated from South Korean marine environments were screened and characterized. Among these isolates, Bacillus sp. SM01, a newly identified strain, produced the highest amount of PHB using xylose. Under optimal conditions, the maximum dry cell weight (DCW) was 3.41 ± 0.09 g/L, with 62% PHB content, and Bacillus sp. SM01 showed Poly (3-hydroxybutyrate-co-3-hydroxyvalerate) copolymer production with propionate; however, the growth of Bacillus sp. SM01 was greatly inhibited by the presence of glucose. Co-culturing Bacillus sp. SM01 with Cupriavidus necator NCIMB 11599 resulted in increased DCW, PHB production, and utilization of glucose and xylose, the main sugar of lignocellulosic biomass, compared with the monoculture. Our results indicated that this co-culture system can be used to increase PHB production and overcome the limitation of sugar consumption associated with Bacillus sp. SM01 and C. necator.


Subject(s)
Bacillus/metabolism , Cupriavidus necator/metabolism , Hydroxybutyrates/metabolism , Xylose/metabolism , Bacillus/genetics , Bacillus/isolation & purification , Bacillus/ultrastructure , Calorimetry, Differential Scanning , Coculture Techniques , Cupriavidus necator/ultrastructure , Drug Resistance, Microbial/genetics , Pentanoic Acids/metabolism , RNA, Ribosomal, 16S/genetics , Time Factors
5.
J Microbiol Methods ; 182: 106151, 2021 03.
Article in English | MEDLINE | ID: mdl-33592223

ABSTRACT

Aerobic plate counts, the standard for bacterial enumeration in the probiotic industry, can be biased towards fast-growing organisms that replicate on synthetic media and can significantly underestimate total bacterial abundance. Culture-independent approaches such as fluorescence in situ hybridization (FISH) hold promise as a means to rapidly and accurately enumerate bacteria in probiotic products. In addition, FISH has the potential to more accurately represent bacterial growth dynamics in the environment in which products are applied without imposing additional growth constraints that are required for enumeration via plate counts. In this study, we designed and optimized three new FISH probes to visualize and quantify Bacillus amyloliquefaciens, Bacillus pumilus, and Bacillus licheniformis within probiotic products. Microscopy-based estimates were consistent or higher than label claims for Pediococcus acidilactici, Pediococcus pentosaceus, Lactobacillus plantarum, Bacillus subtilis, Bacillus amyloliquefaciens, Bacillus licheniformis and Bacillus pumilus in both a direct fed microbial (DFM) product as well as a crop microbial biostimulant (CMB) product. Quantification with FISH after a germination experiment revealed the potential for this approach to be used after application of the product.


Subject(s)
Bacillus/ultrastructure , In Situ Hybridization, Fluorescence/methods , Microscopy/methods , Probiotics , Fluorescence
6.
Biotechnol Lett ; 43(2): 479-494, 2021 Feb.
Article in English | MEDLINE | ID: mdl-33047274

ABSTRACT

Here we report heterologous expression, enzymatic characterization and structure homology modeling of a subtilisin-like alkaline serine protease (ASP) from Bacillus halodurans C-125. Encoding gene was successfully obtained by PCR and cloned into pMA0911 shuttle vector under the control of strong HpaII promoter and expressed extracellularly. ASP enzyme was successfully expressed in B. subtilis WB800 cell line lacking eight extracellular proteases and produced extracellularly in the culture medium. Km, Vmax and specific activity parameters of the recombinantly produced ASP were identified as 0.2899 mg/ml, 76.12 U/ml and 9500 U/mg, respectively. The purified enzyme revealed remarkable proteolytic activity at highly alkaline conditions with a pH optimum 12.0 and notable thermostability with temperature optimum at 60 °C. Furthermore, substrate-free enzyme revealed remarkable pH stability at pH 12.0 and maintained 93% of its initial activity when incubated at 37 °C for 24 h and 60% of its initial activity upon incubation at 60 °C for 1 h. Theoretically calculated molecular mass of ASP protein was confirmed through SDS-PAGE and western blot analysis (Mw: 28.3 kDa). The secondary and tertiary structures of ASP protein were also identified through homology modeling and further examined in detail. ASP harbors a typical S8/S53 peptidase domain comprising 17 ß-sheets and 9 α-helixes within its secondary structure. The structure dynamics analysis of modeled 3D structure further revealed that transient inactivating propeptide chain is the most dynamic region of ASP enzyme with 8.52 Å2 ß-Factor value. Additional residue-dependent fluctuation plot analysis also confirmed the elevated structure dynamics patterning of ASP N-terminus which could be the potential prerequisite for the autonomous propeptide removal of alkaline serine peptidases. Yet the functional domain of ASP becomes quite stable after autonomous exclusion of its propeptide. Although the sequence homology between ASP and commercial detergent additive B. lentus protease (PDB ID:1GCI) was moderate (65.4% sequence similarity), their overlaid 3D structures revealed much higher similarity (98.14%) within 0.80 Å RMSD. In conclusions, with remarkable pH stability, notable thermostability and particularly high specific activity at extreme alkaline conditions, the unveiled ASP protein stands out as a novel protease candidate for various industrial sectors such as textile, detergent, leather, feed, waste, pharmaceutical and others.


Subject(s)
Bacillus/ultrastructure , Models, Molecular , Serine Proteases/ultrastructure , Subtilisin/genetics , Bacillus/chemistry , Bacillus subtilis/genetics , Bacillus subtilis/ultrastructure , Cloning, Molecular , Enzyme Stability/genetics , Gene Expression Regulation, Bacterial/genetics , Hydrogen-Ion Concentration , Molecular Dynamics Simulation , Proteolysis , Serine Proteases/chemistry , Substrate Specificity , Subtilisin/chemistry , Temperature
7.
PLoS One ; 15(3): e0230443, 2020.
Article in English | MEDLINE | ID: mdl-32191752

ABSTRACT

Polyhydroxybutyrate (PHB) is a biodegradable biopolymer which is useful for various applications including packing, medical and coating materials. An endospore-forming bacterium (strain BP17) was isolated from composted soil and evaluated for PHB production. Strain BP17, taxonomically identified as Bacillus drentensis, showed enhanced PHB accumulation and was selected for further studies. To achieve maximum PHB production, the culture conditions for B. drentensis BP17 were optimized through response surface methodology (RSM) employing central composite rotatable design (CCRD). The final optimum fermentation conditions included: pineapple peel solution, 11.5% (v/v); tryptic soy broth (TSB), 60 g/L; pH, 6.0; inoculum size, 10% (v/v) and temperature, 28°C for 36 h. This optimization yielded 5.55 g/L of PHB compared to the non-optimized condition (0.17 g/L). PHB accumulated by B. drentensis BP17 had a polydispersity value of 1.59 and an average molecular weight of 1.15x105 Da. Thermal analyses revealed that PHB existed as a thermally stable semi-crystalline polymer, exhibiting a thermal degradation temperature of 228°C, a melting temperature of 172°C and an apparent melting enthalpy of fusion of 83.69 J/g. It is evident that B. drentensis strain BP17 is a promising bacterium candidate for PHB production using agricultural waste, such as pineapple peel as a low-cost alternative carbon source for PHB production.


Subject(s)
Ananas/chemistry , Bacillus/metabolism , Hydroxybutyrates/metabolism , Plastics/metabolism , Waste Products , Analysis of Variance , Bacillus/cytology , Bacillus/ultrastructure , Phylogeny , Proton Magnetic Resonance Spectroscopy , RNA, Ribosomal, 16S/genetics , Time Factors , Transition Temperature
8.
J Hazard Mater ; 388: 122065, 2020 04 15.
Article in English | MEDLINE | ID: mdl-31954306

ABSTRACT

Bioremediation of cadmium polluted soil using biochar (BC) and plant growth promotion bacteria (PGPB) have been widely concerned. In our study, a novel Cd immobilizing PGPB strain TZ5 was isolated based on the Cd immobilizing potential and plant growth promotion (PGP) traits. Further, changes of surface morphology and functional groups of TZ5 cells were observed after exposed to Cd2+ by SEM-EDS and FTIR analyses. Then, the strain TZ5 was successfully loaded on BC as biochemical composites material (BCM). Pot experiment indicated that the percentage of acetic acid-extractable Cd in BCM treatments significantly decreased by 11.34 % than control. Meanwhile, BCM significantly increased the dry weight of ryegrass by 77.78 %, and decreased the Cd concentration of ryegrass by 48.49 %, compared to control. Microbial counts and soil enzyme activities in rhizosphere were both significantly improved by BCM. Furthermore, the proportion of relative abundance of Bacillus genus was enhanced after treated by BCM, which indicated that the strain TZ5 was successfully colonized in the rhizosphere. This study provided a practical strategy for bioremediation of Cd contaminated soil.


Subject(s)
Bacillus/metabolism , Cadmium/metabolism , Charcoal , Lolium , Soil Pollutants/metabolism , Bacillus/genetics , Bacillus/ultrastructure , Biodegradation, Environmental , DNA, Bacterial , Microscopy, Electron, Scanning , RNA, Ribosomal, 16S , Soil Microbiology
9.
Sci Rep ; 9(1): 18994, 2019 12 12.
Article in English | MEDLINE | ID: mdl-31831778

ABSTRACT

In this study, electrospun cellulose acetate - poly(ethylene oxide) nanofibrous membrane was found to be unique in immobilizing bacterial cells. Here, removal of methylene blue in aqueous media was achieved by using isolated species of bacteria (Bacillus paramycoides) from industrial wastewater and immobilized on cellulose acetate- poly(ethylene oxide) nanofibers using DMSO as a solvent. The decolorization time was varied from 0 to 72 h, different dye concentrations from 20 to 200 mg/L and bacterial cells count was investigated to achieve the maximum MB removal by bacteria-immobilized CA/PEO nanofibrous membrane. The effective dye decolorization was achieved within 48 h and MB removal % was around 93%. Furthermore, reusability of the bacteria-immobilized CA/PEO nanofibrous membrane was tested. It was found that after the 4th usage, 44% of the dye decolorization capacity still could be achieved. These results are promising and suggest that bacteria-immobilized CA/PEO nanofibrous membrane could be economically feasible and eco-friendly when used in MB removal from industrial wastewater. Combination of both adsorption and biodegradation methods was found to be effective in MB removal from aqueous media.


Subject(s)
Bacillus/metabolism , Cellulose/analogs & derivatives , Membranes, Artificial , Nanofibers/chemistry , Polyethylene Glycols/chemistry , Wastewater , Water Purification , Adsorption , Bacillus/ultrastructure , Cellulose/chemistry , Cellulose/ultrastructure , Methylene Blue/isolation & purification , Nanofibers/ultrastructure , Temperature , Time Factors
10.
PLoS One ; 14(11): e0224689, 2019.
Article in English | MEDLINE | ID: mdl-31738781

ABSTRACT

The manganese transport regulator MntR is a metal-ion activated transcriptional repressor of manganese transporter genes to maintain manganese ion homeostasis. MntR, a member of the diphtheria toxin repressor (DtxR) family of metalloregulators, selectively responds to Mn2+ and Cd2+ over Fe2+, Co2+ and Zn2+. The DtxR/MntR family members are well conserved transcriptional repressors that regulate the expression of metal ion uptake genes by sensing the metal ion concentration. MntR functions as a homo-dimer with one metal ion binding site per subunit. Each MntR subunit contains two domains: an N-terminal DNA binding domain, and a C-terminal dimerization domain. However, it lacks the C-terminal SH3-like domain of DtxR/IdeR. The metal ion binding site of MntR is located at the interface of the two domains, whereas the DtxR/IdeR subunit contains two metal ion binding sites, the primary and ancillary sites, separated by 9 Å. In this paper, we reported the crystal structures of the apo and Mn2+-bound forms of MntR from Bacillus halodurans, and analyze the structural basis of the metal ion binding site. The crystal structure of the Mn2+-bound form is almost identical to the apo form of MntR. In the Mn2+-bound structure, one subunit contains a binuclear cluster of manganese ions, the A and C sites, but the other subunit forms a mononuclear complex. Structural data about MntR from B. halodurans supports the previous hypothesizes about manganese-specific activation mechanism of MntR homologues.


Subject(s)
Bacillus/ultrastructure , Bacterial Proteins/ultrastructure , Manganese/metabolism , Repressor Proteins/ultrastructure , Allosteric Site , Amino Acid Sequence , Bacillus/metabolism , Bacterial Proteins/isolation & purification , Bacterial Proteins/metabolism , Crystallography, X-Ray , Models, Molecular , Protein Domains , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Recombinant Proteins/ultrastructure , Repressor Proteins/isolation & purification , Repressor Proteins/metabolism , Sequence Alignment
11.
J Basic Microbiol ; 59(10): 979-991, 2019 Oct.
Article in English | MEDLINE | ID: mdl-31469183

ABSTRACT

This study investigates the effect of metals (cadmium, lead, mercury, and tellurium) and organic pollutants (benzene, diesel, lindane, and xylene) on a dinoflagellate-Prorocentrum sigmoides Böhm-and its associated culturable bacteria. Two bacterial cultures (Bacillus subtilis strain PD005 and B. xiamensis strain PD006) were isolated from P. sigmoides and characterized by scanning electron microscopy, 16S ribosomal RNA sequencing, biochemical analyses, and growth curve studies. This study points to a mutualistic relationship between P. sigmoides and its associated Bacillus isolates. P. sigmoides enhanced the growth of its associated Bacillus spp., through the secretion of extracellular exudates. In return, both Bacillus isolates contributed to the resistance of P. sigmoides to metals and organic pollutants. P. sigmoides and both Bacillus isolates exhibited concentration-dependent responses to metals and organic pollutants. An intriguing feature was the similar response of P. sigmoides and its associated Bacillus isolates to mercury and cadmium, indicating a co-selection of mercury and cadmium resistance. This provides support to the "dinoflagellate host-phycosphere bacteria" behaving as a single functional unit. However, the sensitivity profiles of P. sigmoides and its associated Bacillus isolates are different with respect to metals versus organic pollutants. These aspects need to be addressed in future studies to unravel the effect of metal and organic pollutants on dinoflagellates, an important component of the phytoplankton community, and to discern the influence of associated "phycosphere" bacteria on the response of dinoflagellates to pollutants.


Subject(s)
Bacillus/drug effects , Dinoflagellida/drug effects , Dinoflagellida/microbiology , Hydrocarbons/pharmacology , Metals/pharmacology , Water Pollutants, Chemical/pharmacology , Bacillus/genetics , Bacillus/growth & development , Bacillus/ultrastructure , Biological Coevolution , DNA, Bacterial/genetics , Dinoflagellida/metabolism , Drug Resistance , Microscopy, Electron, Scanning , RNA, Ribosomal, 16S/genetics , Symbiosis
12.
An Acad Bras Cienc ; 91(3): e20181295, 2019 Aug 19.
Article in English | MEDLINE | ID: mdl-31432907

ABSTRACT

The banana tree is associated with different species of endophytic bacteria that can stimulate plant growth. However, further studies are needed to better understand the relationships between this group of bacteria and the host plant. The objective of this study was to investigate the localization of the EB-40 (Bacillus sp.) through anatomical and ultrastructural analyses in micropropagated banana plantlets. The results demonstrated the effective colonization of the EB-40 isolate in the intercellular and intracellular spaces, as well as in the rhizosphere region. The wall of endophytic bacteria contains calcium and nitrogen. The EB-40 isolate was also observed to associate with the plasma membrane and cell wall. These results further our understanding of the mechanisms involved in the colonization of plant cells by endophytic bacteria in micropropagated banana plantlets.


Subject(s)
Bacillus/physiology , Endophytes/ultrastructure , Musa/microbiology , Plant Development , Plant Roots/microbiology , Bacillus/ultrastructure , Microscopy, Electron, Scanning , Musa/growth & development , Musa/ultrastructure , Plant Roots/growth & development
13.
J Microbiol Biotechnol ; 29(6): 887-896, 2019 Jun 28.
Article in English | MEDLINE | ID: mdl-31216842

ABSTRACT

Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS)-based pathogen identification relies on the ribosomal protein spectra provided in the proprietary database. Although these mass spectra can discern various pathogens at species level, the spectra-based method still has limitations in identifying closely-related microbial species. In this study, to overcome the limits of the current MALDI-TOF MS identification method using ribosomal protein spectra, we applied MALDI-TOF MS of low-mass profiling to the identification of two genetically related Bacillus species, the food-borne pathogen Bacillus cereus, and the insect pathogen Bacillus thuringiensis. The mass spectra of small molecules from 17 type strains of two bacilli were compared to the morphological, biochemical, and genetic identification methods of pathogens. The specific mass peaks in the low-mass range (m/z 500- 3,000) successfully identified various closely-related strains belonging to these two reference species. The intensity profiles of the MALDI-TOF mass spectra clearly revealed the differences between the two genetically-related species at strain level. We suggest that small molecules with low molecular weight, 714.2 and 906.5 m/z can be potential mass biomarkers used for reliable identification of B. cereus and B. thuringiensis.


Subject(s)
Bacillus cereus/chemistry , Bacillus cereus/classification , Bacterial Proteins/chemistry , Bacterial Typing Techniques/methods , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Bacillus/chemistry , Bacillus/classification , Bacillus/ultrastructure , Bacillus cereus/ultrastructure , Bacillus thuringiensis/chemistry , Bacillus thuringiensis/classification , Bacillus thuringiensis/ultrastructure , Biomarkers/chemistry , DNA, Bacterial/genetics , Foodborne Diseases/microbiology , Polymerase Chain Reaction , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Species Specificity
14.
Curr Microbiol ; 75(10): 1378-1383, 2018 Oct.
Article in English | MEDLINE | ID: mdl-29931384

ABSTRACT

Bacillus sp. SJ-10 (KCCM 90078, JCM 15709) is a halotolerant bacterium isolated from a traditional Korean food, i.e., salt-fermented fish (jeotgal). The bacterium can survive and engage in metabolism at high salt concentrations. Here, we reported complete genome sequence of Bacillus sp. SJ-10, which has a single circular chromosome of 4,041,649 base pairs with a guanine-cytosine content of 46.39%. Bacillus sp. SJ-10 encodes a subunit of poly-γ-glutamic acid (γ-PGA) with a molecular weight of approximately 400 kDa, which contains four γ-PGA synthases (pgsB, pgsC, pgsAA and pgsE) and one γ-PGA-releasing gene (pgsS). This bacterium also able to produce salt-stable enzymes such as protease, ß-glucosidase, and ß-1,3-1,4-glucanase. This affords significant insights into strategies employed by halotolerant bacteria to survive at high salt concentrations. The sequence contains information on secondary metabolites biosynthetic gene cluster, and most importantly enzymes produced by the bacterium may be valuable with respect to food, beverage, detergent, animal feed, and certain commercial contexts.


Subject(s)
Bacillus/genetics , Bacillus/metabolism , Genome, Bacterial , Polyglutamic Acid/analogs & derivatives , Whole Genome Sequencing , Bacillus/isolation & purification , Bacillus/ultrastructure , Computational Biology/methods , Molecular Sequence Annotation , Phylogeny , Polyglutamic Acid/biosynthesis , RNA, Ribosomal, 16S/genetics
15.
Colloids Surf B Biointerfaces ; 167: 516-523, 2018 Jul 01.
Article in English | MEDLINE | ID: mdl-29729629

ABSTRACT

The present study aims to evaluate the interactions between four exopolysaccharides (EPS) produced by probiotic bacteria and sodium caseinate (Cas) in order to simulate their behavior in dairy products. Complexation between the produced EPS samples and Cas was investigated as a function of polysaccharide to protein ratio. The highest turbidity and average size of complexes were formed at an EPS/Cas ratio of 3 (corresponding to 1 g/L of EPS and 0.33 g/L of Cas) as a result of the combination of individual complexes to form aggregates. Zeta potential measurements and Cas surface hydrophobicity results suggested that complex formation occurred essentially through electrostatic attractions with a possible contribution of hydrophobic interaction for EPS-GM which was produced by Bacillus tequilensis-GM. Afterwards, the effect of pH on the complexation between biopolymers was studied when EPS and Cas concentrations were maintained constant at 1 and 0.33 g/L, respectively. pH was adjusted to 3.0 and 3.5, respectively. Results showed that the highest amount and sizes of EPS/Cas complexes were formed at pH 3.5 and that EPS-GM enabled to obtain the biggest and highest amount of aggregates. Therefore, the obtained results support the fact that the simultaneous presence of EPS and Cas in dairy products results in complexes formation via electrostatic interactions depending on EPS/Cas ratio and pH of the medium.


Subject(s)
Bacillus/metabolism , Caseins/metabolism , Polysaccharides, Bacterial/metabolism , Probiotics/metabolism , Anions/chemistry , Anions/metabolism , Bacillus/ultrastructure , Caseins/chemistry , Caseins/ultrastructure , Hydrogen-Ion Concentration , Microscopy, Electron, Scanning , Microscopy, Fluorescence , Particle Size , Polysaccharides, Bacterial/chemistry , Polysaccharides, Bacterial/ultrastructure , Protein Binding , Static Electricity
16.
Colloids Surf B Biointerfaces ; 162: 220-227, 2018 Feb 01.
Article in English | MEDLINE | ID: mdl-29190473

ABSTRACT

Antifouling function of copper-based layers is usually gained through the release of cuprous or copper ions to damage most fouling species. In this research the intervening mechanisms of copper ions in formation of simplified conditioning layer comprising marine polysaccharide alginate and subsequent adhesion of typical marine bacteria and algae were studied. Fast interaction of Cu2+ with alginate with the formation of copper alginate multimers was observed for the first time by negative-staining electron microscopy. Interconnecting chains of alginate and copper alginate upon adsorption on silicon wafer and tangled structure of the conditioning layer were further characterized by atomic force microscopy. Adhesion testing showed that consumption of copper ions by their linking with alginate in incubation solutions resulted in mitigated toxicity of the ions to the microorganisms Bacillus sp., Chlorella pyrenoidosa and Phaeodactylum tricornutum. The results would give insight into understanding and regulating the formation of conditioning layer for desired antifouling performances.


Subject(s)
Alginates/chemistry , Anti-Infective Agents/pharmacology , Biofouling/prevention & control , Copper/pharmacology , Adsorption , Anti-Infective Agents/chemistry , Bacillus/drug effects , Bacillus/growth & development , Bacillus/ultrastructure , Bacterial Adhesion/drug effects , Chlorella/drug effects , Chlorella/growth & development , Chlorella/ultrastructure , Copper/chemistry , Diatoms/drug effects , Diatoms/growth & development , Diatoms/ultrastructure , Glucuronic Acid/chemistry , Hexuronic Acids/chemistry , Silicon/chemistry
17.
Nat Commun ; 8(1): 746, 2017 09 29.
Article in English | MEDLINE | ID: mdl-28963463

ABSTRACT

Bacteria that produce Mn oxides are extraordinarily skilled engineers of nanomaterials that contribute significantly to global biogeochemical cycles. Their enzyme-based reaction mechanisms may be genetically tailored for environmental remediation applications or bioenergy production. However, significant challenges exist for structural characterization of the enzymes responsible for biomineralization. The active Mn oxidase in Bacillus sp. PL-12, Mnx, is a complex composed of a multicopper oxidase (MCO), MnxG, and two accessory proteins, MnxE and MnxF. MnxG shares sequence similarity with other, structurally characterized MCOs. MnxE and MnxF have no similarity to any characterized proteins. The ~200 kDa complex has been recalcitrant to crystallization, so its structure is unknown. Here, we show that native mass spectrometry defines the subunit topology and copper binding of Mnx, while high-resolution electron microscopy visualizes the protein and nascent Mn oxide minerals. These data provide critical structural information for understanding Mn biomineralization by such unexplored enzymes.Significant challenges exist for structural characterization of enzymes responsible for biomineralization. Here the authors show that native mass spectrometry and high resolution electron microscopy can define the subunit topology and copper binding of a manganese oxidizing complex, and describe early stage formation of its mineral products.


Subject(s)
Bacillus/metabolism , Bacterial Proteins/metabolism , Copper/metabolism , Manganese Compounds/metabolism , Nanoparticles/metabolism , Oxides/metabolism , Oxidoreductases/metabolism , Bacillus/ultrastructure , Bacterial Proteins/ultrastructure , Manganese/metabolism , Mass Spectrometry , Microscopy, Electron, Transmission , Nanoparticles/ultrastructure , Oxidoreductases/ultrastructure
18.
Appl Environ Microbiol ; 83(20)2017 10 15.
Article in English | MEDLINE | ID: mdl-28802269

ABSTRACT

Radioactive strontium (90Sr) leaked into saline environments, including the ocean, from the Fukushima Daiichi Nuclear Power Plant after a nuclear accident. Since the removal of 90Sr using general adsorbents (e.g., zeolite) is not efficient at high salinity, a suitable alternative immobilization method is necessary. Therefore, we incorporated soluble Sr into biogenic carbonate minerals generated by urease-producing microorganisms from a saline solution. An isolate, Bacillus sp. strain TK2d, from marine sediment removed >99% of Sr after contact for 4 days in a saline solution (1.0 × 10-3 mol liter-1 of Sr, 10% marine broth, and 3% [wt/vol] NaCl). Transmission electron microscopy and energy-dispersive X-ray spectroscopy showed that Sr and Ca accumulated as phosphate minerals inside the cells and adsorbed at the cell surface at 2 days of cultivation, and then carbonate minerals containing Sr and Ca developed outside the cells after 2 days. Energy-dispersive spectroscopy revealed that Sr, but not Mg, was present in the carbonate minerals even after 8 days. X-ray absorption fine-structure analyses showed that a portion of the soluble Sr changed its chemical state to strontianite (SrCO3) in biogenic carbonate minerals. These results indicated that soluble Sr was selectively solidified into biogenic carbonate minerals by the TK2d strain in highly saline environments.IMPORTANCE Radioactive nuclides (134Cs, 137Cs, and 90Sr) leaked into saline environments, including the ocean, from the Fukushima Daiichi Nuclear Power Plant accident. Since the removal of 90Sr using general adsorbents, such as zeolite, is not efficient at high salinity, a suitable alternative immobilization method is necessary. Utilizing the known concept that radioactive 90Sr is incorporated into bones by biomineralization, we got the idea of removing 90Sr via incorporation into biominerals. In this study, we revealed the ability of the isolated ureolytic bacterium to remove Sr under high-salinity conditions and the mechanism of Sr incorporation into biogenic calcium carbonate over a longer duration. These findings indicated the mechanism of the biomineralization by the urease-producing bacterium and the possibility of the biomineralization application for a new purification method for 90Sr in highly saline environments.


Subject(s)
Bacillus/metabolism , Carbonates/metabolism , Environmental Restoration and Remediation/methods , Sodium Chloride/metabolism , Strontium Radioisotopes/metabolism , Bacillus/ultrastructure , Biodegradation, Environmental , Calcium Carbonate/metabolism , Microscopy, Electron, Transmission , Strontium/metabolism
19.
Sci Rep ; 7(1): 6027, 2017 07 20.
Article in English | MEDLINE | ID: mdl-28729734

ABSTRACT

Mural paintings in the hypogeal environment of the Tomba degli Scudi in Tarquinia, Italy, show a quite dramatic condition: the plaster mortar lost his cohesion and a white layer coating is spread over almost all the wall surfaces. The aim of this research is to verify if the activity of microorganisms could be one of the main causes of deterioration and if the adopted countermeasures (conventional biocide treatments) are sufficient to stop it. A biocide treatment of the whole environment has been carried out before the conservative intervention and the tomb has been closed for one month. When the tomb was opened again, we sampled the microorganisms present on the frescoes and we identified four Bacillus species and one mould survived to the biocide treatment. These organisms are able to produce spores, a highly resistant biological form, which has permitted the survival despite the biocide treatment. We show that these Bacillus strains are able to produce calcium carbonate and could be responsible for the white deposition that was damaging and covering the entire surface of the frescoes. Our results confirm that the sanitation intervention is non always resolutive and could even be deleterious in selecting harmful microbial communities.


Subject(s)
Environmental Microbiology , Microbiota , Paintings , Bacillus/isolation & purification , Bacillus/ultrastructure , Italy
20.
Water Sci Technol ; 75(5-6): 1071-1083, 2017 Mar.
Article in English | MEDLINE | ID: mdl-28272037

ABSTRACT

The presence of heavy metals in the environment due to industrial activities is of serious concern because of their toxic behaviour towards humans and other forms of life. Biosorption of Pb(II) using dry bacterial biomass of Bacillus badius AK, previously isolated from water hyacinth compost, has been undertaken in batch system. The optimum conditions of biosorption were determined by investigating the initial pH, contact time, initial biomass dosage at constant temperature of 40 °C, initial metal concentration of 100 mg/L and rotational speed of 150 rpm. The optimum pH was found to be 5 and equilibrium contact time was 2.5 h. The maximum biosorption capacity of Pb(II) on Bacillus badius AK was 138.8 mg/g at an initial concentration of 100 mg/L. A kinetics study revealed that the adsorption process followed pseudo second order rate kinetics. The experimental data were fitted to the Langmuir isotherm. Characterization of the biomass indicated the presence of several functional groups. The results indicated that the bacterium Bacillus badius AK is efficient for the removal of Pb(II).


Subject(s)
Bacillus/metabolism , Eichhornia/metabolism , Lead/isolation & purification , Soil , Adsorption , Bacillus/ultrastructure , Biodegradation, Environmental , Biomass , Hydrogen-Ion Concentration , Kinetics , Spectrometry, X-Ray Emission , Spectroscopy, Fourier Transform Infrared , Temperature , Time Factors , Water Pollutants, Chemical/isolation & purification
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