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1.
Int J Mol Sci ; 25(12)2024 Jun 12.
Article in English | MEDLINE | ID: mdl-38928160

ABSTRACT

Aflatoxin B1 (AFB1) contamination is a serious threat to nutritional safety and public health. The CotA-laccase from Bacillus licheniformis ANSB821 previously reported by our laboratory showed great potential to degrade AFB1 without redox mediators. However, the use of this CotA-laccase to remove AFB1 in animal feed is limited because of its low catalytic efficiency and low expression level. In order to make better use of this excellent enzyme to effectively degrade AFB1, twelve mutants of CotA-laccase were constructed by site-directed mutagenesis. Among these mutants, E186A and E186R showed the best degradation ability of AFB1, with degradation ratios of 82.2% and 91.8% within 12 h, which were 1.6- and 1.8-times higher than those of the wild-type CotA-laccase, respectively. The catalytic efficiencies (kcat/Km) of E186A and E186R were found to be 1.8- and 3.2-times higher, respectively, than those of the wild-type CotA-laccase. Then the expression vectors pPICZαA-N-E186A and pPICZαA-N-E186R with an optimized signal peptide were constructed and transformed into Pichia pastoris GS115. The optimized signal peptide improved the secretory expressions of E186A and E186R in P. pastoris GS115. Collectively, the current study provided ideal candidate CotA-laccase mutants for AFB1 detoxification in food and animal feed and a feasible protocol, which was desperately needed for the industrial production of CotA-laccases.


Subject(s)
Aflatoxin B1 , Bacillus licheniformis , Bacterial Proteins , Laccase , Aflatoxin B1/metabolism , Bacillus licheniformis/genetics , Bacillus licheniformis/metabolism , Bacillus licheniformis/enzymology , Bacterial Proteins/metabolism , Bacterial Proteins/genetics , Laccase/metabolism , Laccase/genetics , Mutagenesis, Site-Directed , Recombinant Proteins/metabolism , Recombinant Proteins/genetics , Saccharomycetales
2.
Front Biosci (Elite Ed) ; 16(2): 15, 2024 May 16.
Article in English | MEDLINE | ID: mdl-38939914

ABSTRACT

BACKGROUND: Fall armyworm (Spodoptera frugiperda) is a highly destructive maize pest that significantly threatens agricultural productivity. Existing control methods, such as chemical insecticides and entomopathogens, lack effectiveness, necessitating alternative approaches. METHODS: Gut-associated bacteria were isolated from the gut samples of fall armyworm and screened based on their chitinase and protease-producing ability before characterization through 16S rRNA gene sequence analysis. The efficient chitinase-producing Bacillus licheniformis FGE4 and Enterobacter cloacae FGE18 were chosen to test the biocontrol efficacy. As their respective cell suspensions and extracted crude chitinase enzyme, these two isolates were applied topically on the larvae, supplemented with their feed, and analyzed for their quantitative food use efficiency and survivability. RESULTS: Twenty-one high chitinase and protease-producing bacterial isolates were chosen. Five genera were identified by 16S rRNA gene sequencing: Enterobacter, Enterococcus, Bacillus, Pantoea, and Kocuria. In the biocontrol efficacy test, the consumption index and relative growth rate were lowered in larvae treated with Enterobacter cloacae FGE18 by topical application and feed supplementation. Similarly, topical treatment of Bacillus licheniformis FGE4 to larvae decreased consumption index, relative growth rate, conversion efficiency of ingested food, and digested food values. CONCLUSION: The presence of gut bacteria with high chitinase activity negatively affects insect health. Utilizing gut-derived bacterial isolates with specific insecticidal traits offers a promising avenue to control fall armyworms. This research suggests a potential strategy for future pest management.


Subject(s)
Chitinases , Spodoptera , Animals , Spodoptera/microbiology , Chitinases/metabolism , Chitinases/genetics , RNA, Ribosomal, 16S/genetics , Bacteria/enzymology , Bacillus licheniformis/genetics , Bacillus licheniformis/enzymology , Enterobacter cloacae/genetics , Enterobacter cloacae/enzymology , Larva/microbiology , Pest Control, Biological/methods , Gastrointestinal Tract/microbiology
3.
Talanta ; 276: 126152, 2024 Aug 15.
Article in English | MEDLINE | ID: mdl-38718642

ABSTRACT

To enhance food safety, the need for swift and precise detection of B. licheniformis, a bacterium prevalent in various environments, including soil and food products, is paramount. This study presents an innovative and cost-effective bioassay designed to specifically identify the foodborne pathogen, B. licheniformis, utilizing a colorimetric signal approach. The biosensor, featuring a 3D-printed architecture, incorporates a casein-based liquid-proof gelatine film, selectively liquefying in response to the caseinolytic/proteolytic activity of external enzymes from the pathogen. As the sample liquefies, it progresses through a color layer, causing the migration of dye to an absorbent layer, resulting in a distinct positive signal. This bioassay exhibits exceptional sensitivity, detecting concentrations as low as 1 CFU/mL within a 9.3-h assay duration. Notably, this cost-efficient bioassay outperforms conventional methods in terms of efficacy and cost-effectiveness, offering a straightforward solution for promptly detecting B. licheniformis in food samples.


Subject(s)
Bacillus licheniformis , Biosensing Techniques , Food Microbiology , Food Safety , Biosensing Techniques/methods , Food Microbiology/methods , Bacillus licheniformis/enzymology , Colorimetry/methods , Food Contamination/analysis
4.
Open Biol ; 14(5): 240014, 2024 May.
Article in English | MEDLINE | ID: mdl-38745462

ABSTRACT

Most successes in computational protein engineering to date have focused on enhancing one biophysical trait, while multi-trait optimization remains a challenge. Different biophysical properties are often conflicting, as mutations that improve one tend to worsen the others. In this study, we explored the potential of an automated computational design strategy, called CamSol Combination, to optimize solubility and stability of enzymes without affecting their activity. Specifically, we focus on Bacillus licheniformis α-amylase (BLA), a hyper-stable enzyme that finds diverse application in industry and biotechnology. We validate the computational predictions by producing 10 BLA variants, including the wild-type (WT) and three designed models harbouring between 6 and 8 mutations each. Our results show that all three models have substantially improved relative solubility over the WT, unaffected catalytic rate and retained hyper-stability, supporting the algorithm's capacity to optimize enzymes. High stability and solubility embody enzymes with superior resilience to chemical and physical stresses, enhance manufacturability and allow for high-concentration formulations characterized by extended shelf lives. This ability to readily optimize solubility and stability of enzymes will enable the rapid and reliable generation of highly robust and versatile reagents, poised to contribute to advancements in diverse scientific and industrial domains.


Subject(s)
Bacterial Proteins , Enzyme Stability , Protein Engineering , Solubility , alpha-Amylases , alpha-Amylases/chemistry , alpha-Amylases/metabolism , alpha-Amylases/genetics , Protein Engineering/methods , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Bacterial Proteins/genetics , Mutation , Bacillus licheniformis/enzymology , Bacillus licheniformis/genetics , Algorithms , Models, Molecular
5.
J Microbiol Biotechnol ; 34(5): 1154-1163, 2024 May 28.
Article in English | MEDLINE | ID: mdl-38563097

ABSTRACT

Glucosylation is a well-known approach to improve the solubility, pharmacological, and biological properties of flavonoids, making flavonoid glucosides a target for large-scale biosynthesis. However, the low yield of products coupled with the requirement of expensive UDP-sugars limits the application of enzymatic systems for large-scale. C. glutamicum is a Gram-positive and generally regarded as safe (GRAS) bacteria frequently employed for the large-scale production of amino acids and bio-fuels. Due to the versatility of its cell factory system and its non-endotoxin producing properties, it has become an attractive system for the industrial-scale biosynthesis of alternate products. Here, we explored the cell factory of C. glutamicum for efficient glucosylation of flavonoids using apigenin as a model flavonoid, with the heterologous expression of a promiscuous glycosyltransferase, YdhE from Bacillus licheniformis and the endogenous overexpression of C. glutamicum genes galU1 encoding UDP-glucose pyrophosphorylase and pgm encoding phosphoglucomutase involved in the synthesis of UDP-glucose to create a C. glutamicum cell factory system capable of efficiently glucosylation apigenin with a high yield of glucosides production. Consequently, the production of various apigenin glucosides was controlled under different temperatures yielding almost 4.2 mM of APG1(apigenin-4'-O-ß-glucoside) at 25°C, and 0.6 mM of APG2 (apigenin-7-O-ß-glucoside), 1.7 mM of APG3 (apigenin-4',7-O-ß-diglucoside) and 2.1 mM of APG4 (apigenin-4',5-O-ß-diglucoside) after 40 h of incubation with the supplementation of 5 mM of apigenin and 37°C. The cost-effective developed system could be used to modify a wide range of plant secondary metabolites with increased pharmacokinetic activities on a large scale without the use of expensive UDP-sugars.


Subject(s)
Apigenin , Corynebacterium glutamicum , Glucosides , Metabolic Engineering , Corynebacterium glutamicum/metabolism , Corynebacterium glutamicum/genetics , Apigenin/metabolism , Metabolic Engineering/methods , Glucosides/metabolism , Glucosides/biosynthesis , Glycosylation , Bacillus licheniformis/metabolism , Bacillus licheniformis/genetics , Bacillus licheniformis/enzymology , Uridine Diphosphate Glucose/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , UTP-Glucose-1-Phosphate Uridylyltransferase/metabolism , UTP-Glucose-1-Phosphate Uridylyltransferase/genetics , Glycosyltransferases/metabolism , Glycosyltransferases/genetics
6.
World J Microbiol Biotechnol ; 40(6): 181, 2024 Apr 26.
Article in English | MEDLINE | ID: mdl-38668833

ABSTRACT

In view of the extensive potential applications of chitinase (ChiA) in various fields such as agriculture, environmental protection, medicine, and biotechnology, the development of a high-yielding strain capable of producing chitinase with enhanced activity holds significant importance. The objective of this study was to utilize the extracellular chitinase from Bacillus thuringiensis as the target, and Bacillus licheniformis as the expression host to achieve heterologous expression of ChiA with enhanced activity. Initially, through structural analysis and molecular dynamics simulation, we identified key amino acids to improve the enzymatic performance of chitinase, and the specific activity of chitinase mutant D116N/E118N was 48% higher than that of the natural enzyme, with concomitant enhancements in thermostability and pH stability. Subsequently, the expression elements of ChiA(D116N/E118N) were screened and modified in Bacillus licheniformis, resulting in extracellular ChiA activity reached 89.31 U/mL. Further efforts involved the successful knockout of extracellular protease genes aprE, bprA and epr, along with the gene clusters involved in the synthesis of by-products such as bacitracin and lichenin from Bacillus licheniformis. This led to the development of a recombinant strain, DW2△abelA, which exhibited a remarkable improvement in chitinase activity, reaching 145.56 U/mL. To further improve chitinase activity, a chitinase expression frame was integrated into the genome of DW2△abelA, resulting in a significant increas to 180.26 U/mL. Optimization of fermentation conditions and medium components further boosted shake flask enzyme activity shake flask enzyme activity, achieving 200.28 U/mL, while scale-up fermentation experiments yielded an impressive enzyme activity of 338.79 U/mL. Through host genetic modification, expression optimization and fermentation optimization, a high-yielding ChiA strain was successfully constructed, which will provide a solid foundation for the extracellular production of ChiA.


Subject(s)
Bacillus licheniformis , Bacterial Proteins , Chitinases , Bacillus licheniformis/genetics , Bacillus licheniformis/enzymology , Bacillus thuringiensis/genetics , Bacillus thuringiensis/enzymology , Bacitracin , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Chitinases/biosynthesis , Enzyme Stability , Hydrogen-Ion Concentration , Molecular Dynamics Simulation , Multigene Family , Recombinant Proteins/biosynthesis , Temperature
7.
Int J Biol Macromol ; 266(Pt 1): 130818, 2024 May.
Article in English | MEDLINE | ID: mdl-38479659

ABSTRACT

Alkaline protease AprE, produced by Bacillus licheniformis 2709 is an important edible hydrolase, which has potential applications in nutrient acquisition and medicine. The expression of AprE is finely regulated by a complex transcriptional regulation system. However, there is little study on transcriptional regulation mechanism of AprE biosynthesis in Bacillus licheniformis, which limits system engineering and further enhancement of AprE. Here, the severely depressed expression of aprE in degU and degS deletion mutants illustrated that the regulator DegU and its phosphorylation played a crucial part in AprE biosynthesis. Further electrophoretic mobility shift assay (EMSA) in vitro indicated that phosphorylated DegU can directly bind to the regulatory region though the DNase I foot-printing experiments failed to observe protected region. The plasmid-mediated overexpression of degU32 (Hy) obviously improved the yield of AprE by 41.6 % compared with the control strain, which demonstrated the importance of phosphorylation state of DegU on the transcription of aprE in vivo. In this study, the putative binding sequence of aprE (5'-TAAAT……AAAAT…….AACAT…TAAAA-3') located upstream -91 to -87 bp, -101 to -97 bp, -195 to -191 bp, -215 to -211 bp of the transcription start site (TSS) in B. licheniformis was computationally identified based on the DNA-binding sites of DegU in Bacillus subtilis. Overall, we systematically investigated the influence of the interplay between phosphorylated DegU and its cognate DNA sequence on expression of aprE, which not only contributes to the further AprE high-production in a genetically modified host in the future, but also significantly increases our understanding of the aprE transcription mechanism.


Subject(s)
Bacillus licheniformis , Bacterial Proteins , Endopeptidases , Gene Expression Regulation, Bacterial , Membrane Transport Proteins , Bacillus licheniformis/genetics , Bacillus licheniformis/enzymology , Bacillus licheniformis/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Endopeptidases/genetics , Endopeptidases/metabolism , Phosphorylation , Promoter Regions, Genetic
8.
J Sci Food Agric ; 104(9): 5176-5185, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38284560

ABSTRACT

BACKGROUND: The present study was conducted to investigate the effects of dietary novel alkaline protease from Bacillus licheniformis on the growth performance, meat quality, antioxidant status and intestinal morphology of broilers. In total, 4000 broilers were randomly assigned into five groups and treated with normal control, normal control + 100 mg kg-1 protease, normal control + 200 mg kg-1 protease, normal control + 300 mg kg-1 protease and normal control + 400 mg kg-1 protease. RESULTS: Supplementing protease impacted final body weight (linear, P = 0.003; quadratic, P = 0.006) and decreased feed conversion rate (linear, P = 0.036) in broilers. Moreover, dietary protease significantly increased breast muscle rate (linear, P = 0.005; quadratic, P = 0.021) and decreased drip loss (linear, P < 0.001; quadratic, P < 0.001). In addition, dietary protease notably increased protein digestibility (linear, P = 0.001; quadratic, P = 0.006) and trypsin activity (linear, P = 0.002; quadratic, P = 0.009) in jejunum. Light microscopy revealed that the jejunum villi in the 300 mg kg-1 and 400 mg kg-1 groups exhibited greater height and a denser arrangement compared to those in the control group. The addition of protease decreased malondialdehyde content (linear, P < 0.001; quadratic, P < 0.001) and increased total antioxidant capacity (linear, P = 0.001; quadratic, P < 0.001) in pectoral muscles. CONCLUSION: The results of the present study suggest that dietary novel alkaline protease from B. licheniformis improved growth performance by affecting trypsin activity, protein digestibility, antioxidant capacity and intestinal health. © 2024 Society of Chemical Industry.


Subject(s)
Animal Feed , Antioxidants , Bacillus licheniformis , Bacterial Proteins , Chickens , Endopeptidases , Intestines , Meat , Animals , Chickens/growth & development , Chickens/metabolism , Bacillus licheniformis/enzymology , Bacillus licheniformis/growth & development , Bacillus licheniformis/metabolism , Antioxidants/metabolism , Endopeptidases/metabolism , Endopeptidases/chemistry , Animal Feed/analysis , Meat/analysis , Intestines/growth & development , Bacterial Proteins/metabolism , Male , Dietary Supplements/analysis , Feathers/chemistry , Feathers/metabolism , Feathers/growth & development , Diet/veterinary , Digestion
9.
Biotechnol Lett ; 45(2): 299-307, 2023 Feb.
Article in English | MEDLINE | ID: mdl-36592259

ABSTRACT

OBJECTIVES: To find glycine oxidase genes that can be applied to the breeding of glyphosate resistant crops. RESULTS: The glycine oxidase (GO, EC 1.4.3.19) gene (GenBank No: KC831746) from Bacillus licheniformis (B. licheniformis) was chemically synthesized and transformed into glyphosate-sensitive Escherichia coli (E. coli). The GO gene was transformed into Arabidopsis and rice through Agrobacterium-mediated transformation. The test results confirmed that transgenic plants containing GO genes are more resistant to glyphosate than wild-type plants. On solid Murashige and Skoog (MS) (Murashige and Skoog1962 ) medium containing 200 µM glyphosate, transgenic Arabidopsis thaliana grew normally, while wild-type plants were stunted and root growth was restricted. In a solution containing 500 µM glyphosate, wild-type rice showed severe yellowing, while transgenic rice grew normally. In addition, when sprayed with 10 mM glyphosate solution, wild-type rice withered and died, while transgenic rice grew well. The function of GO gene in glyphosate resistance and the application value of GO gene in the cultivation of glyphosate-resistant crops is proved. CONCLUSIONS: The glycine oxidase gene from B. licheniformis enhances the resistance of E. coli, Arabidopsis and rice to glyphosate.


Subject(s)
Bacillus licheniformis , Herbicide Resistance , Herbicides , Oryza , Plants, Genetically Modified , Arabidopsis/drug effects , Arabidopsis/genetics , Bacillus licheniformis/enzymology , Escherichia coli/genetics , Herbicides/toxicity , Plant Breeding , Plants, Genetically Modified/drug effects , Plants, Genetically Modified/genetics , Oryza/drug effects , Oryza/genetics , Glyphosate
10.
Molecules ; 26(18)2021 Sep 16.
Article in English | MEDLINE | ID: mdl-34577096

ABSTRACT

To adapt to various ecological niches, the members of genus Bacillus display a wide spectrum of glycoside hydrolases (GH) responsible for the hydrolysis of cellulose and lignocellulose. Being abundant and renewable, cellulose-containing plant biomass may be applied as a substrate in second-generation biotechnologies for the production of platform chemicals. The present study aims to enhance the natural cellulase activity of two promising 2,3-butanediol (2,3-BD) producers, Bacillus licheniformis 24 and B. velezensis 5RB, by cloning and heterologous expression of cel8A and cel48S genes of Acetivibrio thermocellus. In B. licheniformis, the endocellulase Cel8A (GH8) was cloned to supplement the action of CelA (GH9), while in B. velezensis, the cellobiohydrolase Cel48S (GH48) successfully complemented the activity of endo-cellulase EglS (GH5). The expression of the natural and heterologous cellulase genes in both hosts was demonstrated by reverse-transcription PCR. The secretion of clostridial cellulases was additionally enhanced by enzyme fusion to the subtilisin-like signal peptide, reaching a significant increase in the cellulase activity of the cell-free supernatants. The results presented are the first to reveal the possibility of genetic complementation for enhancement of cellulase activity in bacilli, thus opening the prospect for genetic improvement of strains with an important biotechnological application.


Subject(s)
Bacillus licheniformis/enzymology , Bacillus licheniformis/genetics , Bacillus/enzymology , Bacillus/genetics , Cellulases/genetics , Cellulases/metabolism , Clostridium/genetics , Bacterial Proteins/biosynthesis , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Cellulose/metabolism , Cloning, Molecular , Hydrolysis , Recombinant Proteins/biosynthesis , Recombinant Proteins/genetics , Recombinant Proteins/metabolism
11.
Folia Microbiol (Praha) ; 66(5): 787-795, 2021 Oct.
Article in English | MEDLINE | ID: mdl-34128186

ABSTRACT

Bacillus licheniformis HJ4 showing strong fibrinolytic activity was isolated from Hwangseokae jeotgal. aprEHJ4, a major fibrinolytic gene, was cloned by PCR, and an ORF consisting of 379 amino acids was located. The mature enzyme was expected to be 27 kDa in size after processing, but a 24-kDa protein was observed by SDS-PAGE and fibrin zymography, indicating additional processing. RT-qPCR showed that expression level of aprEHJ4 in culture with 0% salt (control) was the highest followed by culture with 8% salt (89.7% of control) and 5% salt (74.2%) at 84 h. The expression level in culture with 15% salt was 46.9%. The results matched with the fibrinolytic activity measurements of cultures and indicated that AprEHJ4 maintained significant activity in the presence of salt up to 15% (w/v). AprEHJ4 was overproduced in Escherichia coli, and mature 27 kDa protein was purified after in vitro renaturation. The optimum pH and temperature of AprEHJ4 were pH 8 and 40 ℃, respectively.


Subject(s)
Bacillus licheniformis , Fermented Foods , Seafood , Bacillus licheniformis/enzymology , Enzyme Activation/drug effects , Fermented Foods/microbiology , Hydrogen-Ion Concentration , Peptide Hydrolases/metabolism , Republic of Korea , Seafood/microbiology , Sodium Chloride/pharmacology
12.
Chem Commun (Camb) ; 57(36): 4460-4463, 2021 May 04.
Article in English | MEDLINE | ID: mdl-33949502

ABSTRACT

We report a facile and reversible method to immobilize a broad range of His6-tagged proteins on the E. coli cell surface through Fe(iii)-metal complexes. A His6-tagged eGFP and four His6-tagged enzymes were successfully immobilized on the cell surface. Additionally, a hydrogel sheath around E. coli cells was generated by immobilized His6-tagged HRP.


Subject(s)
Alcohol Oxidoreductases/metabolism , Escherichia coli/metabolism , Ferric Compounds/metabolism , Green Fluorescent Proteins/metabolism , Laccase/metabolism , Lipase/metabolism , Alcohol Oxidoreductases/chemistry , Bacillus licheniformis/enzymology , Bacillus subtilis/enzymology , Candida tropicalis/enzymology , Cell Membrane/chemistry , Cell Membrane/metabolism , Escherichia coli/chemistry , Escherichia coli/cytology , Ferric Compounds/chemistry , Green Fluorescent Proteins/chemistry , Histidine/chemistry , Histidine/metabolism , Laccase/chemistry , Lipase/chemistry , Oligopeptides/chemistry , Oligopeptides/metabolism
13.
Vet Res ; 52(1): 59, 2021 Apr 16.
Article in English | MEDLINE | ID: mdl-33863379

ABSTRACT

The unconventional infectious agents of transmissible spongiform encephalopathies (TSEs) are prions. Their infectivity co-appears with PrPSc, aberrant depositions of the host's cellular prion protein (PrPC). Successive heat treatment in the presence of detergent and proteolysis by a keratinase from Bacillus licheniformis PWD-1 was shown before to destroy PrPSc from bovine TSE (BSE) and sheep scrapie diseased brain, however data regarding expected reduction of infectivity were still lacking. Therefore, transgenic Tgbov XV mice which are highly BSE susceptible were used to quantify infectivity before and after the bovine brain treatment procedure. Also four immunochemical analyses were applied to compare the levels of PrPSc. After heating at 115 °C with or without subsequent proteolysis, the original BSE infectivity of 106.2-6.4 ID50 g-1 was reduced to a remaining infectivity of 104.6-5.7 ID50 g-1 while strain characteristics were unaltered, even after precipitation with methanol. Surprisingly, PrPSc depletion was 5-800 times higher than the loss of infectivity. Similar treatment was applied on other prion strains, which were CWD1 in bank voles, 263 K scrapie in hamsters and sheep PG127 scrapie in tg338 ovinized mice. In these strains however, infectivity was already destroyed by heat only. These findings show the unusual heat resistance of BSE and support a role for an additional factor in prion formation as suggested elsewhere when producing prions from PrPC. Leftover material in the remaining PrPSc depleted BSE preparation offers a unique substrate for searching additional elements for prion infectivity and improving our concept about the nature of prions.


Subject(s)
Bacillus licheniformis/chemistry , Encephalopathy, Bovine Spongiform/etiology , Hot Temperature , Peptide Hydrolases/metabolism , Prion Proteins/chemistry , Proteolysis , Animals , Bacillus licheniformis/enzymology , Cattle , Mice, Transgenic
14.
Carbohydr Polym ; 264: 118059, 2021 Jul 15.
Article in English | MEDLINE | ID: mdl-33910709

ABSTRACT

Processive cellulases are highly efficient molecular engines involved in the cellulose breakdown process. However, the mechanism that processive bacterial enzymes utilize to recruit and retain cellulose strands in the catalytic site remains poorly understood. Here, integrated enzymatic assays, protein crystallography and computational approaches were combined to study the enzymatic properties of the processive BlCel48B cellulase from Bacillus licheniformis. Hydrolytic efficiency, substrate binding affinity, cleavage patterns, and the apparent processivity of bacterial BlCel48B are significantly impacted by the cellulose size and its surface morphology. BlCel48B crystallographic structure was solved with ligands spanning -5 to -2 and +1 to +2 subsites. Statistical coupling analysis and molecular dynamics show that co-evolved residues on active site are critical for stabilizing ligands in the catalytic tunnel. Our results provide mechanistic insights into BlCel48B molecular-level determinants of activity, substrate binding, and processivity on insoluble cellulose, thus shedding light on structure-activity correlations of GH48 family members in general.


Subject(s)
Bacillus licheniformis/enzymology , Cellulase/chemistry , Cellulase/metabolism , Cellulose/metabolism , Bacillus licheniformis/chemistry , Catalytic Domain , Cellulases/chemistry , Cellulases/metabolism , Cellulose/chemistry , Crystallography, X-Ray/methods , Hydrolysis , Models, Molecular , Molecular Dynamics Simulation , Protein Binding , Substrate Specificity
15.
Int J Biol Macromol ; 180: 677-683, 2021 Jun 01.
Article in English | MEDLINE | ID: mdl-33757855

ABSTRACT

L-asparaginase (EC 3.5.1.1) showed great commercial value owing to its effective treatment of acute lymphoblastic leukemia (ALL), lymphoid system malignancies and Hodgkin disease, and also to its use in the prevention of acrylamide formation in fried and baked foods. In this study, a type I L-asparaginase gene from Bacillus licheniformis Z-1 (BlAase) was cloned and expressed in Bacillus subtilis RIK 1285. Results showed that even without the mediation of any N-terminal signal peptides, BlAase can efficiently secrete into the medium. Further investigation indicated that the secretion of the BlAase was via neither Sec- nor Tat-dependent secretion pathway, and both the N- and C-terminal regions of the BlAase were essential for its expression and secretion, implying that BlAase might be secreted via a non-classical secretion pathway. To explore its secretion ability, BlAase was used as a signal peptide to direct the secretion of various heterologous proteins, where two of five proteins were successfully secreted with the mediation of BlAase. To the best of our knowledge, this is the first time to achieve extracellular expression of L-asparaginase via non-classical protein secretion pathway in B. subtilis, and provide a potential tool for secretion of recombinant proteins expressed in B. subtilis using BlAase as a signal peptide.


Subject(s)
Asparaginase/metabolism , Bacillus licheniformis/enzymology , Bacillus subtilis/metabolism , Bacterial Proteins/metabolism , Recombinant Proteins/metabolism , Asparaginase/genetics , Bacillus licheniformis/genetics , Bacillus subtilis/genetics , Bacterial Proteins/genetics , Blotting, Western , Computational Biology/methods , Protein Sorting Signals/genetics
16.
Food Chem ; 354: 129475, 2021 Aug 30.
Article in English | MEDLINE | ID: mdl-33744660

ABSTRACT

The α-amylases are the most widely used industrial enzymes, and are particularly useful as liquifying enzymes in industrial processes based upon starch. Since starch liquefication is carried out at evaluated temperatures, typically above 60 °C, there is substantial demand for thermostable α -amylases. Most naturally occurring α -amylases exhibit moderate thermostability, so substantial effort has been invested in attempts to increase their thermostability. One structural feature that has the potential to increase protein thermostability is the introduction of salt bridges. However, not every salt bridge contributes to protein thermostability. The salt bridges in amylases have their characteristics in terms of distribution, configuration and location. The summary of these features helps to introduce new salt bridges based on the characteristics. This review focuses on salt bridges of α-amylases, both naturally present and introduced using mutagenesis. Its aim is to provide a bird's eye view of distribution, configuration, location of desirable salt bridges.


Subject(s)
Salts/chemistry , alpha-Amylases/metabolism , Bacillus licheniformis/enzymology , Binding Sites , Enzyme Stability , Metals/chemistry , Molecular Dynamics Simulation , Temperature , alpha-Amylases/chemistry
17.
Biotechnol Bioeng ; 118(7): 2559-2571, 2021 07.
Article in English | MEDLINE | ID: mdl-33788275

ABSTRACT

Keratinase is an attractive industrial enzyme that can specifically catalyze keratin waste to obtain value-added products. A challenge to the application of keratinase is improving catalytic capacity to achieve efficient hydrolysis. In this study, we effectively expressed the keratinase gene from Bacillus licheniformis BBE11-1 in Bacillus subtilis WB600 based on pro-peptide engineering. Partial deletion of the pro-peptide sequence and the substitution of amino acid at the pro-peptide cleavage site (P1) suggested that the "chaperone effect" and "cleavage efficiency" of the pro-peptide determine the activity of the mature enzyme. Subsequently, seven target sites that can increase the activity of the mature enzyme by 16%-66% were obtained through the multiple sequence alignment of pro-peptides and site-directed mutation. We further performed combinatorial mutations at six sites based on the design principle of three-codon saturation mutations and obtained mutant 2-D12 (236.8 KU/mg) with a mature enzyme activity of 186% of the original (127.6 KU/mg). Finally, continuous fermentation was carried out in a 5-L bioreactor for 22 h, and the activity of the 2-D12 mature enzyme was increased to 391.6 KU/mg. Most importantly, 2-D12 could degrade more than 90% of feather waste into amino acids and peptides within 12 h with the aid of sulfite.


Subject(s)
Bacillus licheniformis/enzymology , Bacillus subtilis/enzymology , Bacterial Proteins/chemistry , Feathers/chemistry , Keratins/chemistry , Peptide Hydrolases/chemistry , Amino Acid Substitution , Animals , Bacillus licheniformis/genetics , Bacillus subtilis/genetics , Bacterial Proteins/genetics , Catalysis , Mutation, Missense , Peptide Hydrolases/genetics
18.
J Food Sci ; 86(4): 1475-1487, 2021 Apr.
Article in English | MEDLINE | ID: mdl-33655547

ABSTRACT

Cypermethrin (CY) is a synthetic pyrethroid widely used to control insect pests and it elicits a toxic effect on the human body. In this study, Bacillus licheniformis B-1 isolated from tea garden soil was used to degrade CY effectively. A specific enzyme was mainly localized in the extracellular compartments of B-1. This enzyme was identified as an esterase that could be produced without CY. The enzyme was purified 23.03-fold to apparent homogeneity with 8.38% overall recovery by ammonium sulfate precipitation, anion exchange chromatography, and gel filtration chromatography. The molecular mass of the CY-degrading enzyme was 66.4 kDa, and its optimal pH and temperature were 8.5 and 40 °C, respectively. Appropriate Zn2+ , Mn2+ , Mg2+ , Tween 80, SDS, Triton X-100, and BSA concentrations could greatly increase the activity of this enzyme. By contrast, EDTA, 1,10-phenanthroline, NaF, and PMSF strongly inhibited its activity. The purified enzyme showed Km and Vmax values were 5.532 nmol/mL and 33.445 nmol/min. The CY residue in lettuce and cherry tomatoes could be removed more than 50% under the conditions of the treatment concentration for 500 mg/L and the enzyme preparation dilution of 100 times. These results suggested that the CY-degrading enzyme, a constitutive enzyme that mainly exists in the extracellular space, was a novel esterase that might be used to detoxify CY, and could remove CY in vegetables effectively. PRACTICAL APPLICATION: Our research found a novel cypermethrin-hydrolyzing esterase from Bacillus licheniformis B-1 and proved that the enzyme could remove cypermethrin in vegetables effectively.


Subject(s)
Bacillus licheniformis/enzymology , Esterases/isolation & purification , Esterases/metabolism , Pyrethrins/metabolism , Chromatography, Gel , Enzyme Stability , Esterases/chemistry , Humans , Hydrogen-Ion Concentration , Hydrolysis , Molecular Weight , Temperature
19.
Int J Biol Macromol ; 176: 126-136, 2021 Apr 15.
Article in English | MEDLINE | ID: mdl-33548313

ABSTRACT

Enzymatic degradation has become the most promising approach to degrading organic ester compounds. In this study, Bacillus licheniformis NCU CS-5 was isolated from the spoilage of Cinnamomum camphora seed kernel, and its extracellular lipase was purified, with a specific activity of 192.98 U/mg. The lipase was found to be a trimeric protein as it showed a single band of 27 kDa in SDS-PAGE and 81 kDa in Native-PAGE. It was active in a wide range of temperatures (5-55 °C) and pH values (6.0-9.0), and the optimal temperature and pH value were 40 °C and 8.0, respectively. The enzyme was active in the presence of various organic solvents, metal ions, inhibitors and surfactants. Both crude and purified lipase retained more than 80% activity after 5 h in the presence of commercial detergents, suggesting its great application potential in detergent industry. The highest activity was found to be towards medium- and long-chain fatty acids (C6-C18). Peptide mass spectrometric analysis of the purified lipase showed similarity to the lipase family of B. licheniformis. Furthermore, it degraded more than 90% 2,4-D butyl ester to its hydrolysate 2,4-D within 24 h, indicating that the novel lipase may be applied to degrade organic ester pesticides.


Subject(s)
2,4-Dichlorophenoxyacetic Acid/analogs & derivatives , Bacillus licheniformis/enzymology , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Lipase/chemistry , Lipase/metabolism , 2,4-Dichlorophenoxyacetic Acid/metabolism , Bacillus licheniformis/genetics , Bacillus licheniformis/isolation & purification , Bacterial Proteins/genetics , Biocatalysis , Biodegradation, Environmental , Cinnamomum camphora/microbiology , Detergents , Enzyme Stability , Herbicides/metabolism , Industrial Microbiology , Lipase/genetics , Molecular Weight , Peptide Mapping , Phylogeny , Solvents , Substrate Specificity , Surface-Active Agents
20.
Molecules ; 26(2)2021 Jan 13.
Article in English | MEDLINE | ID: mdl-33451050

ABSTRACT

This work describes a novel approach for the synthesis of (-)-epigallocatechin gallate (EGCG) palmitate by a chemical-synthesis method, where the elevated stability of the EGCG derivative is achieved. Various parameters affecting the acylation process, such as the base, solvent, as well as the molar ratio of palmitoyl chloride, have been studied to optimize the acylation procedure. The optimized reaction condition was set as follows: EGCG/palmitoyl chloride/sodium acetate was under a molar ratio of 1:2:2, with acetone as the solvent, and the reaction temperature was 40 °C. Under the optimized condition, the yield reached 90.6%. The EGCG palmitate (PEGCG) was isolated and identified as 4'-O-palmitoyl EGCG. Moreover, the stability of PEGCG under different conditions was proved significantly superior to EGCG. Finally, PEGCG showed better inhibition towards α-amylase and α-glucosidase, which was 4.5 and 52 times of EGCG, respectively. Molecular docking simulations confirmed the in vitro assay results. This study set a novel and practical synthetic approach for the derivatization of EGCG, and suggest that PEGCG may act as an antidiabetic agent.


Subject(s)
Catechin/analogs & derivatives , Enzyme Inhibitors/pharmacology , Hypoglycemic Agents/pharmacology , Palmitates/pharmacology , Polyphenols/chemistry , Tea/chemistry , Bacillus licheniformis/enzymology , Catechin/chemical synthesis , Catechin/chemistry , Catechin/pharmacology , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/chemistry , Hypoglycemic Agents/chemical synthesis , Hypoglycemic Agents/chemistry , Ligands , Molecular Docking Simulation , Palmitates/chemical synthesis , Palmitates/chemistry , Saccharomyces cerevisiae/enzymology , alpha-Amylases/antagonists & inhibitors , alpha-Amylases/metabolism , alpha-Glucosidases/metabolism
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