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1.
J Biol Chem ; 299(12): 105386, 2023 Dec.
Article in English | MEDLINE | ID: mdl-37898401

ABSTRACT

Aggregation behavior provides bacteria protection from harsh environments and threats to survival. Two uncharacterized proteases, LapX and Lap, are important for Vibrio cholerae liquid-based aggregation. Here, we determined that LapX is a serine protease with a preference for cleavage after glutamate and glutamine residues in the P1 position, which processes a physiologically based peptide substrate with a catalytic efficiency of 180 ± 80 M-1s-1. The activity with a LapX substrate identified by a multiplex substrate profiling by mass spectrometry screen was 590 ± 20 M-1s-1. Lap shares high sequence identity with an aminopeptidase (termed VpAP) from Vibrio proteolyticus and contains an inhibitory bacterial prepeptidase C-terminal domain that, when eliminated, increases catalytic efficiency on leucine p-nitroanilide nearly four-fold from 5.4 ± 4.1 × 104 M-1s-1 to 20.3 ± 4.3 × 104 M-1s-1. We demonstrate that LapX processes Lap to its mature form and thus amplifies Lap activity. The increase is approximately eighteen-fold for full-length Lap (95.7 ± 5.6 × 104 M-1s-1) and six-fold for Lap lacking the prepeptidase C-terminal domain (11.3 ± 1.9 × 105 M-1s-1). In addition, substrate profiling reveals preferences for these two proteases that could inform in vivo function. Furthermore, purified LapX and Lap restore the timing of the V. cholerae aggregation program to a mutant lacking the lapX and lap genes. Both proteases must be present to restore WT timing, and thus they appear to act sequentially: LapX acts on Lap, and Lap acts on the substrate involved in aggregation.


Subject(s)
Bacterial Proteins , Leucyl Aminopeptidase , Serine Proteases , Vibrio cholerae , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/physiology , Leucyl Aminopeptidase/chemistry , Leucyl Aminopeptidase/genetics , Leucyl Aminopeptidase/physiology , Peptides , Serine Proteases/chemistry , Serine Proteases/genetics , Serine Proteases/physiology , Substrate Specificity , Vibrio cholerae/enzymology , Vibrio cholerae/genetics , Vibrio cholerae/physiology , Catalysis
2.
Science ; 379(6637): 1149-1156, 2023 03 17.
Article in English | MEDLINE | ID: mdl-36927025

ABSTRACT

Therapeutic manipulation of the gut microbiota holds great potential for human health. The mechanisms bacteria use to colonize the gut therefore present valuable targets for clinical intervention. We now report that bacteria use phase separation to enhance fitness in the mammalian gut. We establish that the intrinsically disordered region (IDR) of the broadly and highly conserved transcription termination factor Rho is necessary and sufficient for phase separation in vivo and in vitro in the human commensal Bacteroides thetaiotaomicron. Phase separation increases transcription termination by Rho in an IDR-dependent manner. Moreover, the IDR is critical for gene regulation in the gut. Our findings expose phase separation as vital for host-commensal bacteria interactions and relevant for novel clinical applications.


Subject(s)
Bacterial Proteins , Bacteroides thetaiotaomicron , Gastrointestinal Microbiome , Genetic Fitness , Intrinsically Disordered Proteins , RNA Helicases , Rho Factor , Animals , Humans , Bacteroides thetaiotaomicron/genetics , Bacteroides thetaiotaomicron/physiology , Gastrointestinal Microbiome/genetics , Gastrointestinal Microbiome/physiology , Intrinsically Disordered Proteins/chemistry , Intrinsically Disordered Proteins/genetics , Intrinsically Disordered Proteins/physiology , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/physiology , RNA Helicases/chemistry , RNA Helicases/genetics , RNA Helicases/physiology , Rho Factor/chemistry , Rho Factor/genetics , Rho Factor/physiology , Transcription Termination, Genetic , Protein Domains , Mice , Germ-Free Life , Mice, Inbred C57BL , Male , Female
3.
Nat Commun ; 14(1): 61, 2023 01 04.
Article in English | MEDLINE | ID: mdl-36599845

ABSTRACT

The multifunctional GSDMB protein is an important molecule in human immunity. The pyroptotic and bactericidal activity of GSDMB is a host response to infection by the bacterial pathogen Shigella flexneri, which employs the virulence effector IpaH7.8 to ubiquitinate and target GSDMB for proteasome-dependent degradation. Furthermore, IpaH7.8 selectively targets human but not mouse GSDMD, suggesting a non-canonical mechanism of substrate selection. Here, we report the crystal structure of GSDMB in complex with IpaH7.8. Together with biochemical and functional studies, we identify the potential membrane engagement sites of GSDMB, revealing general and unique features of gasdermin proteins in membrane recognition. We further illuminate how IpaH7.8 interacts with GSDMB, and delineate the mechanism by which IpaH7.8 ubiquitinates and suppresses GSDMB. Notably, guided by our structural model, we demonstrate that two residues in the α1-α2 loop make the mouse GSDMD invulnerable to IpaH7.8-mediated degradation. These findings provide insights into the versatile functions of GSDMB, which could open new avenues for therapeutic interventions for diseases, including cancers and bacterial infections.


Subject(s)
Gasdermins , Pyroptosis , Shigella flexneri , Humans , Bacterial Proteins/metabolism , Bacterial Proteins/physiology , Cell Death , Gasdermins/metabolism , Gasdermins/physiology , Pore Forming Cytotoxic Proteins , Shigella flexneri/metabolism , Shigella flexneri/pathogenicity
4.
Can J Microbiol ; 68(12): 747-757, 2022 Dec 01.
Article in English | MEDLINE | ID: mdl-36194898

ABSTRACT

Legionella pneumophila is a Gram-negative bacterium found in natural and man-made water systems where it replicates within amoebas and ciliates. In humans, once inside the lungs, L. pneumophila replicates in alveolar macrophages and causes Legionnaires' disease, a severe pneumonia. The Icm/Dot type IVb secretion system is a major virulence factor required for intracellular multiplication. The Icm/Dot system allows the secretion of effectors into the cytoplasm of the host cell. These effectors modify host cell vesicular trafficking and prevent maturation of the phagosome. The innate immune response is crucial in restricting L. pneumophila proliferation. TNF-α is one of the major cytokines involved in this process as it renders macrophages more resistant to L. pneumophila infection and induces apoptosis of L. pneumophila-infected macrophages. Tail-specific proteases (Tsp) are involved in tolerating thermal stress and in virulence. We have previously characterized the Tsp encoded by L. pneumophila, showing that it is important for surviving thermal stress and for infection of amoeba when a temperature change occurs during infection. Here, we demonstrated that Tsp is required for intracellular multiplication in macrophages. Absence of tsp is associated with higher production of TNF-α by macrophages in response to L. pneumophila infection. This effect is independent of the Icm/Dot secretion system.


Subject(s)
Legionella pneumophila , Legionnaires' Disease , Humans , Tumor Necrosis Factor-alpha , Legionnaires' Disease/microbiology , Endopeptidases , Bacterial Proteins/physiology
5.
Proc Natl Acad Sci U S A ; 119(33): e2202661119, 2022 08 16.
Article in English | MEDLINE | ID: mdl-35939668

ABSTRACT

In Staphylococcus aureus, virulence is under the control of a quorum sensing (QS) circuit encoded in the accessory gene regulator (agr) genomic locus. Key to this pathogenic behavior is the production and signaling activity of a secreted pheromone, the autoinducing peptide (AIP), generated following the ribosomal synthesis and posttranslational modification of a precursor polypeptide, AgrD, through two discrete cleavage steps. The integral membrane protease AgrB is known to catalyze the first processing event, generating the AIP biosynthetic intermediate, AgrD (1-32) thiolactone. However, the identity of the second protease in this biosynthetic pathway, which removes an N-terminal leader sequence, has remained ambiguous. Here, we show that membrane protease regulator of agr QS (MroQ), an integral membrane protease recently implicated in the agr response, is directly involved in AIP production. Genetic complementation and biochemical experiments reveal that MroQ proteolytic activity is required for AIP biosynthesis in agr specificity group I and group II, but not group III. Notably, as part of this effort, the biosynthesis and AIP-sensing arms of the QS circuit were reconstituted together in vitro. Our experiments also reveal the molecular features guiding MroQ cleavage activity, a critical factor in defining agr specificity group identity. Collectively, our study adds to the molecular understanding of the agr response and Staphylococcus aureus virulence.


Subject(s)
Bacterial Proteins , Membrane Proteins , Peptide Hydrolases , Pheromones , Quorum Sensing , Staphylococcus aureus , Trans-Activators , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Bacterial Proteins/physiology , Membrane Proteins/physiology , Peptide Hydrolases/genetics , Peptide Hydrolases/physiology , Pheromones/biosynthesis , Quorum Sensing/genetics , Staphylococcus aureus/pathogenicity , Trans-Activators/genetics , Trans-Activators/metabolism , Virulence
6.
Sci Rep ; 12(1): 3068, 2022 02 23.
Article in English | MEDLINE | ID: mdl-35197500

ABSTRACT

Serratia marcescens is an opportunistic bacterium that infects a wide range of hosts including humans. It is a potent pathogen in a septic injury model of Drosophila melanogaster since a few bacteria directly injected in the body cavity kill the insect within a day. In contrast, flies do not succumb to ingested bacteria for days even though some bacteria cross the intestinal barrier into the hemolymph within hours. The mechanisms by which S. marcescens attacks enterocytes and damages the intestinal epithelium remain uncharacterized. To better understand intestinal infections, we performed a genetic screen for loss of virulence of ingested S. marcescens and identified FliR, a structural component of the flagellum, as a virulence factor. Next, we compared the virulence of two flagellum mutants fliR and flhD in two distinct S. marcescens strains. Both genes are required for S. marcescens to escape the gut lumen into the hemocoel, indicating that the flagellum plays an important role for the passage of bacteria through the intestinal barrier. Unexpectedly, fliR but not flhD is involved in S. marcescens-mediated damages of the intestinal epithelium that ultimately contribute to the demise of the host. Our results therefore suggest a flagellum-independent role for fliR in bacterial virulence.


Subject(s)
Bacterial Proteins/genetics , Bacterial Proteins/physiology , Drosophila melanogaster/microbiology , Flagella/genetics , Flagella/physiology , Gastroenteritis/microbiology , Intestinal Mucosa/microbiology , Membrane Proteins/genetics , Membrane Proteins/physiology , Serratia Infections , Serratia marcescens/genetics , Serratia marcescens/pathogenicity , Animals , Disease Models, Animal , Intestinal Mucosa/pathology , Mutation , Virulence/genetics
7.
Proc Natl Acad Sci U S A ; 119(8)2022 02 22.
Article in English | MEDLINE | ID: mdl-35165190

ABSTRACT

Mycobacterium tuberculosis has a lipid-rich cell envelope that is remodeled throughout infection to enable adaptation within the host. Few transcriptional regulators have been characterized that coordinate synthesis of mycolic acids, the major cell wall lipids of mycobacteria. Here, we show that the mycolic acid desaturase regulator (MadR), a transcriptional repressor of the mycolate desaturase genes desA1 and desA2, controls mycolic acid desaturation and biosynthesis in response to cell envelope stress. A madR-null mutant of M. smegmatis exhibited traits of an impaired cell wall with an altered outer mycomembrane, accumulation of a desaturated α-mycolate, susceptibility to antimycobacterials, and cell surface disruption. Transcriptomic profiling showed that enriched lipid metabolism genes that were significantly down-regulated upon madR deletion included acyl-coenzyme A (aceyl-CoA) dehydrogenases, implicating it in the indirect control of ß-oxidation pathways. Electromobility shift assays and binding affinities suggest a unique acyl-CoA pool-sensing mechanism, whereby MadR is able to bind a range of acyl-CoAs, including those with unsaturated as well as saturated acyl chains. MadR repression of desA1/desA2 is relieved upon binding of saturated acyl-CoAs of chain length C16 to C24, while no impact is observed upon binding of shorter chain and unsaturated acyl-CoAs. We propose this mechanism of regulation as distinct to other mycolic acid and fatty acid synthesis regulators and place MadR as the key regulatory checkpoint that coordinates mycolic acid remodeling during infection in response to host-derived cell surface perturbation.


Subject(s)
Bacterial Proteins/metabolism , Mycobacterium/metabolism , Mycolic Acids/metabolism , Racemases and Epimerases/metabolism , Acyl Coenzyme A/metabolism , Bacterial Proteins/physiology , Cell Wall/metabolism , Fatty Acid Desaturases/metabolism , Fatty Acids/metabolism , Lipid Metabolism/physiology , Mycobacterium Infections , Mycobacterium tuberculosis/metabolism , Racemases and Epimerases/physiology , Transcription Factors/metabolism
8.
Sci Rep ; 12(1): 3003, 2022 02 22.
Article in English | MEDLINE | ID: mdl-35194033

ABSTRACT

Bacterial kidney disease (BKD) is a chronic bacterial disease affecting both wild and farmed salmonids. The causative agent for BKD is the Gram-positive fish pathogen Renibacterium salmoninarum. As treatment and prevention of BKD have proven to be difficult, it is important to know and identify the key bacterial proteins that interact with the host. We used subcellular fractionation to report semi-quantitative data for the cytosolic, membrane, extracellular, and membrane vesicle (MV) proteome of R. salmoninarum. These data can aid as a backbone for more targeted experiments regarding the development of new drugs for the treatment of BKD. Further analysis was focused on the MV proteome, where both major immunosuppressive proteins P57/Msa and P22 and proteins involved in bacterial adhesion were found in high abundance. Interestingly, the P22 protein was relatively enriched only in the extracellular and MV fraction, implicating that MVs may play a role in host-pathogen interaction. Compared to the other subcellular fractions, the MVs were also relatively enriched in lipoproteins and all four cell wall hydrolases belonging to the New Lipoprotein C/Protein of 60 kDa (NlpC/P60) family were detected, suggesting an involvement in the formation of the MVs.


Subject(s)
Cytoplasmic Vesicles/physiology , Proteome/genetics , Proteomics , Virulence , Animals , Bacterial Adhesion/genetics , Bacterial Proteins/metabolism , Bacterial Proteins/physiology , Cytoplasmic Vesicles/metabolism , Fish Diseases/microbiology , Fishes/microbiology , Host-Parasite Interactions , Kidney Diseases/microbiology , Kidney Diseases/veterinary , Lipoproteins/metabolism , Renibacterium/cytology , Renibacterium/genetics , Renibacterium/pathogenicity , Subcellular Fractions/physiology , Virulence/genetics
9.
Microbiologyopen ; 11(1): e1264, 2022 02.
Article in English | MEDLINE | ID: mdl-35212475

ABSTRACT

Adaptation of opportunistic pathogens to their host environment requires reprogramming of a vast array of genes to facilitate survival in the host. Burkholderia cenocepacia, a Gram-negative bacterium with a large genome of ∼8 Mb that colonizes environmental niches, is exquisitely adaptable to the hypoxic environment of the cystic fibrosis lung and survives in macrophages. We previously identified an immunoreactive acidic protein encoded on replicon 3, BCAS0292. Deletion of the BCAS0292 gene significantly altered the abundance of 979 proteins by 1.5-fold or more; 19 proteins became undetectable while 545 proteins showed ≥1.5-fold reduced abundance, suggesting the BCAS0292 protein is a global regulator. Moreover, the ∆BCAS0292 mutant showed a range of pleiotropic effects: virulence and host-cell attachment were reduced, antibiotic susceptibility was altered, and biofilm formation enhanced. Its growth and survival were impaired in 6% oxygen. In silico prediction of its three-dimensional structure revealed BCAS0292 presents a dimeric ß-structure with a negative surface charge. The ΔBCAS0292 mutant displayed altered DNA supercoiling, implicated in global regulation of gene expression. Three proteins were identified in pull-downs with FLAG-tagged BCAS0292, including the Histone H1-like protein, HctB, which is recognized as a global transcriptional regulator. We propose that BCAS0292 protein, which we have named Burkholderia negatively surface-charged regulatory protein 1 (Bnr1), acts as a DNA-mimic and binds to DNA-binding proteins, altering DNA topology and regulating the expression of multiple genes, thereby enabling the adaptation of B. cenocepacia to highly diverse environments.


Subject(s)
Adaptation, Physiological/physiology , Bacterial Proteins/physiology , Burkholderia cenocepacia/physiology , DNA, Bacterial/physiology , Molecular Mimicry/physiology , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Burkholderia cenocepacia/genetics , Burkholderia cenocepacia/pathogenicity , DNA, Bacterial/genetics , DNA, Bacterial/metabolism , DNA-Binding Proteins/metabolism , Gene Expression Regulation, Bacterial , Multigene Family/genetics , Virulence
10.
Toxins (Basel) ; 14(1)2022 01 13.
Article in English | MEDLINE | ID: mdl-35051032

ABSTRACT

The insecticidal Vip3 proteins, secreted by Bacillus thuringiensis (Bt) during its vegetative growth phase, are currently used in Bt crops to control insect pests, and are genetically distinct from known insecticidal Cry proteins. Compared with Cry toxins, the mechanisms of Vip3 toxins are still poorly understood. Here, the responses of Spodoptera frugiperda larvae after Vip3Aa challenge are characterized. Using an integrative analysis of transcriptomics and proteomics, we found that Vip3Aa has enormous implications for various pathways. The downregulated genes and proteins were mainly enriched in metabolic pathways, including the insect hormone synthesis pathway, whereas the upregulated genes and proteins were mainly involved in the caspase-mediated apoptosis pathway, along with the MAPK signaling and endocytosis pathways. Moreover, we also identified some important candidate genes involved in apoptosis and MAPKs. The present study shows that exposure of S. frugiperda larvae to Vip3Aa activates apoptosis pathways, leading to cell death. The results will promote our understanding of the host response process to the Vip3Aa, and help us to better understand the mode of action of Vip3A toxins.


Subject(s)
Bacterial Proteins/physiology , Insect Proteins/genetics , Proteome/genetics , Spodoptera/genetics , Transcriptome , Animals , Digestive System/metabolism , Insect Proteins/metabolism , Larva/drug effects , Larva/genetics , Larva/growth & development , Larva/microbiology , Proteome/metabolism , Spodoptera/drug effects , Spodoptera/growth & development , Spodoptera/microbiology
11.
Gene ; 817: 146175, 2022 Apr 05.
Article in English | MEDLINE | ID: mdl-35031422

ABSTRACT

Brucella canis is responsible for canine brucellosis, a neglected zoonotic disease. The omp25 gene has been described as an important marker for Brucella intra-species differentiation, in addition to the ability to interact with the host immune system. Therefore, this study investigated the omp25 sequence from B. canis strains associated to a phylogenetic characterization and the unveiling of the molecular structure. In vitro analyses comprised DNA extraction, PCR, and sequencing of omp25 from 19 B. canis strains. Moreover, in silico analyses were performed at nucleotide level for phylogenetic characterization and evolutionary history of B. canis omp25 gene; and in amino acid level including modeling, dynamics, and epitope prediction of B. canis Omp25 protein. Here, we identified a new mutation, L109P, which diverges the worldwide omp25 sequences in two large branches. Interestingly, this mutation appears to have epidemiology importance, based on a geographical distribution of B. canis strains. Structural and molecular dynamics analyses of Omp25 revealed that Omp25L109P does not sustain its native ß-barrel. Likewise, the conformation of B-cell epitope on the mutated region was changed in Omp25L109P protein. Even without an evolutive marker, the new identified mutation appears to affect the basic function of B. canis Omp25 protein, which could indicate virulence adaptation for some B. canis strains in a context of geographical disposition.


Subject(s)
Bacterial Proteins , Brucella canis , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/physiology , Brucella canis/classification , Brucella canis/genetics , Brucella canis/physiology , Evolution, Molecular , Genes, Bacterial , Models, Molecular , Mutation , Phylogeny , Polymerase Chain Reaction , Protein Conformation , Sequence Analysis, DNA
12.
Sci Rep ; 12(1): 831, 2022 01 17.
Article in English | MEDLINE | ID: mdl-35039556

ABSTRACT

Roles for the non-coding small RNA RyhB in quorum-sensing and iron-dependent gene modulation in the human pathogen V. vulnificus were assessed in this study. Both the quorum sensing master regulator SmcR and the Fur-iron complex were observed to bind to the region upstream of the non-coding small RNA RyhB gene to repress expression, which suggests that RyhB is associated with both quorum-sensing and iron-dependent signaling in this pathogen. We found that expression of LuxS, which is responsible for the biosynthesis of autoinducer-2 (AI-2), was higher in wild type than in a ryhB-deletion isotype. RyhB binds directly to the 5'-UTR (untranslated region) of the luxS transcript to form a heteroduplex, which not only stabilizes luxS mRNA but also disrupts the secondary structure that normally obscures the translational start codon and thereby allows translation of LuxS to begin. The binding of RyhB to luxS mRNA requires the chaperone protein Hfq, which stabilizes RyhB. These results demonstrate that the small RNA RyhB is a key element associated with feedback control of AI-2 production, and that it inhibits quorum-sensing signaling in an iron-dependent manner. This study, taken together with previous studies, shows that iron availability and cell density signals are funneled to SmcR and RyhB, and that these regulators coordinate cognate signal pathways that result in the proper balance of protein expression in response to environmental conditions.


Subject(s)
Genes, Bacterial/genetics , Homoserine/analogs & derivatives , Iron/metabolism , Lactones/metabolism , Quorum Sensing/physiology , RNA, Small Untranslated/genetics , RNA, Small Untranslated/physiology , Vibrio vulnificus/genetics , Vibrio vulnificus/physiology , 5' Untranslated Regions , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Bacterial Proteins/physiology , Carbon-Sulfur Lyases/genetics , Carbon-Sulfur Lyases/metabolism , Carbon-Sulfur Lyases/physiology , Gene Expression Regulation, Bacterial/genetics , Homoserine/biosynthesis , Homoserine/metabolism , RNA, Messenger , Signal Transduction/genetics , Signal Transduction/physiology , Vibrio vulnificus/metabolism
13.
Sci Rep ; 12(1): 1251, 2022 01 24.
Article in English | MEDLINE | ID: mdl-35075262

ABSTRACT

Staphylococcus aureus is an opportunistic, pathogenic bacteria that causes significant morbidity and mortality. As antibiotic resistance by S. aureus continues to be a serious concern, developing novel drug therapies to combat these infections is vital. Quorum sensing inhibitors (QSI) dampen S. aureus virulence and facilitate clearance by the host immune system by blocking quorum sensing signaling that promotes upregulation of virulence genes controlled by the accessory gene regulator (agr) operon. While QSIs have shown therapeutic promise in mouse models of S. aureus skin infection, their further development has been hampered by the suggestion that agr inhibition promotes biofilm formation. In these studies, we investigated the relationship between agr function and biofilm growth across various S. aureus strains and experimental conditions, including in a mouse model of implant-associated infection. We found that agr deletion was associated with the presence of increased biofilm only under narrow in vitro conditions and, crucially, was not associated with enhanced biofilm development or enhanced morbidity in vivo.


Subject(s)
Bacterial Proteins/physiology , Biofilms/growth & development , Staphylococcus aureus/physiology , Trans-Activators/physiology , Animals , Culture Techniques , Female , Mice, Inbred BALB C , Quorum Sensing
14.
Bull Exp Biol Med ; 172(2): 164-168, 2021 Dec.
Article in English | MEDLINE | ID: mdl-34855091

ABSTRACT

We studied the effect of bacterial wall peptidoglycan of 7 bacterial species on the competitive properties of human-associated microorganisms. Addition of peptidoglycan to the culture medium did not change the growth characteristics of the test cultures; however, an increase in the antagonism and hydrophobicity of Bifidobacterium sp. and Enterococcus sp. was observed, while the effect on enterobacteria was predominantly indifferent or inhibitory. The effect did not depend much on the source of peptidoglycan and was equally manifested on both indigenous and probiotic strains. The observed new property of peptidoglycan indicates its participation in the formation and functioning of microbiota. The obtained data on the regulation of the properties of microorganisms provide new possibilities for the correction and maintenance of host homeostasis through host-associated microbiota.


Subject(s)
Antibiosis/physiology , Cell Wall/physiology , Peptidoglycan/metabolism , Bacillus subtilis/physiology , Bacterial Proteins/metabolism , Bacterial Proteins/physiology , Bifidobacterium/physiology , Candida/physiology , Cell Wall/chemistry , Cell Wall/metabolism , Enterobacter/physiology , Enterococcus faecalis/physiology , Escherichia coli/physiology , Female , Humans , Lacticaseibacillus casei/physiology , Microbiological Techniques , Peptidoglycan/analysis , Staphylococcus aureus/physiology
15.
Physiol Rep ; 9(23): e15122, 2021 12.
Article in English | MEDLINE | ID: mdl-34877802

ABSTRACT

Resistance exercise (RE) with blood flow restriction (BFR) is recognized as a beneficial strategy in increasing skeletal muscle mass and strength. However, the effects of BFR on changes in perceptual parameters, particularly those related to exercise adherence, induced by RE are not completely understood. In this study, we examined the exercise adherence-related perceptual responses to low-load BFR-RE. Sixteen young males performed both BFR and non-BFR (NBFR) sessions in a crossover design. The bilateral knee extensor low-load RE was performed with a standard BFR-RE protocol, consisting of four sets (total 75 repetitions), using 20% of one-repetition maximum. BFR-RE was performed with 200 mmHg pressure cuffs placed around the proximal region of the thighs. NBFR-RE was performed without pressure cuffs. The ratings of perceived exertion and leg discomfort measured using the Borg's Scales were higher for BFR-RE session than for NBFR-RE session (both p < 0.001 for interaction effect). The Feeling Scale-measured affect and Task Motivation Scale-measured task motivation were lower for BFR-RE session than for NBFR-RE session (both p < 0.05 for interaction effect); by contrast, the Numerical Rating Scale-measured perceived pain was higher for BFR-RE session than for NBFR-RE session (p < 0.001 for interaction effect). The Physical Activity Enjoyment Scale-measured enjoyment immediately after RE was lower with BFR than with NBFR (p < 0.001). These findings suggest that BFR exacerbates the exercise adherence-related perceptual responses to low-load RE in young males. Therefore, further studies are needed to develop effective strategies that minimize the BFR-RE-induced negative effects on perceptual responses.


Subject(s)
Exercise/physiology , Muscle, Skeletal/physiology , Regional Blood Flow/physiology , Resistance Training , Affect/physiology , Bacterial Proteins/physiology , Blood Glucose , Cross-Over Studies , Electromyography , Heart Rate/physiology , Humans , Lactic Acid/blood , Male , Membrane Proteins/physiology , Pilot Projects , Thigh/blood supply , Young Adult
16.
PLoS One ; 16(12): e0260981, 2021.
Article in English | MEDLINE | ID: mdl-34898610

ABSTRACT

Carbon Storage Regulator A (CsrA) is a well-characterized post-transcriptional global regulator that plays a critical role in response to environmental changes in many bacteria. CsrA has been reported to regulate several metabolic pathways, motility, biofilm formation, and virulence-associated genes. The role of csrA in Leptospira spp., which are able to survive in different environmental niches and infect a wide variety of reservoir hosts, has not been characterized. To investigate the role of csrA as a gene regulator in Leptospira, we generated a L. biflexa csrA deletion mutant (ΔcsrA) and csrA overexpressing Leptospira strains. The ΔcsrA L. biflexa displayed poor growth under starvation conditions. RNA sequencing revealed that in rich medium only a few genes, including the gene encoding the flagellar filament protein FlaB3, were differentially expressed in the ΔcsrA mutant. In contrast, 575 transcripts were differentially expressed when csrA was overexpressed in L. biflexa. Electrophoretic mobility shift assay (EMSA) confirmed the RNA-seq data in the ΔcsrA mutant, showing direct binding of recombinant CsrA to flaB3 mRNA. In the pathogen L. interrogans, we were not able to generate a csrA mutant. We therefore decided to overexpress csrA in L. interrogans. In contrast to the overexpressing strain of L. biflexa, the overexpressing L. interrogans strain had poor motility on soft agar. The overexpressing strain of L. interrogans also showed significant upregulation of the flagellin flaB1, flaB2, and flaB4. The interaction of L. interrogans rCsrA and flaB4 was confirmed by EMSA. Our results demonstrated that CsrA may function as a global regulator in Leptospira spp. under certain conditions that cause csrA overexpression. Interestingly, the mechanisms of action and gene targets of CsrA may be different between non-pathogenic and pathogenic Leptospira strains.


Subject(s)
Bacterial Proteins/physiology , Carbon/metabolism , Leptospira/physiology , RNA-Binding Proteins/physiology , Alleles , Bacterial Proteins/genetics , Gene Deletion , Genes, Bacterial , Leptospira/genetics , Phenotype , RNA-Binding Proteins/genetics
17.
Molecules ; 26(22)2021 Nov 10.
Article in English | MEDLINE | ID: mdl-34833876

ABSTRACT

Barnase is an extracellular ribonuclease secreted by Bacillus amyloliquefaciens that was originally studied as a small stable enzyme with robust folding. The identification of barnase intracellular inhibitor barstar led to the discovery of an incredibly strong protein-protein interaction. Together, barnase and barstar provide a fully genetically encoded toxin-antitoxin pair having an extremely low dissociation constant. Moreover, compared to other dimerization systems, the barnase-barstar module provides the exact one-to-one ratio of the complex components and possesses high stability of each component in a complex and high solubility in aqueous solutions without self-aggregation. The unique properties of barnase and barstar allow the application of this pair for the engineering of different variants of targeted anticancer compounds and cytotoxic supramolecular complexes. Using barnase in suicide gene therapy has also found its niche in anticancer therapy. The application of barnase and barstar in contemporary experimental cancer therapy is reflected in the review.


Subject(s)
Bacterial Proteins/metabolism , Drug Delivery Systems/methods , Ribonucleases/metabolism , Bacillus/metabolism , Bacterial Proteins/antagonists & inhibitors , Bacterial Proteins/physiology , Humans , Kinetics , Models, Molecular , Nanotechnology/methods , Neoplasms/drug therapy , Protein Conformation/drug effects , Ribonucleases/antagonists & inhibitors , Ribonucleases/physiology
18.
Molecules ; 26(22)2021 Nov 11.
Article in English | MEDLINE | ID: mdl-34833903

ABSTRACT

Multi-drug resistance (MDR) bacterial pathogens pose a threat to global health and warrant the discovery of new therapeutic molecules, particularly those that can neutralize their virulence and stop the evolution of new resistant mechanisms. The superbug nosocomial pathogen, Pseudomonas aeruginosa, uses a multiple virulence factor regulator (MvfR) to regulate the expression of multiple virulence proteins during acute and persistent infections. The present study targeted MvfR with the intention of designing novel anti-virulent compounds, which will function in two ways: first, they will block the virulence and pathogenesis P. aeruginosa by disrupting the quorum-sensing network of the bacteria, and second, they will stop the evolution of new resistant mechanisms. A structure-based virtual screening (SBVS) method was used to screen druglike compounds from the Asinex antibacterial library (~5968 molecules) and the comprehensive marine natural products database (CMNPD) (~32 thousand compounds), against the ligand-binding domain (LBD) of MvfR, to identify molecules that show high binding potential for the relevant pocket. In this way, two compounds were identified: Top-1 (4-((carbamoyloxy)methyl)-10,10-dihydroxy-2,6-diiminiodecahydropyrrolo[1,2-c]purin-9-yl sulfate) and Top-2 (10,10-dihydroxy-2,6-diiminio-4-(((sulfonatocarbamoyl)oxy)methyl)decahydropyrrolo[1,2-c]purin-9-yl sulfate), in contrast to the co-crystallized M64 control. Both of the screened leads were found to show deep pocket binding and interactions with several key residues through a network of hydrophobic and hydrophilic interactions. The docking results were validated by a long run of 200 ns of molecular dynamics simulation and MM-PB/GBSA binding free energies. All of these analyses confirmed the presence of strong complex formation and rigorous intermolecular interactions. An additional analysis of normal mode entropy and a WaterSwap assay were also performed to complement the aforementioned studies. Lastly, the compounds were found to show an acceptable range of pharmacokinetic properties, making both compounds potential candidates for further experimental studies to decipher their real biological potency.


Subject(s)
Anti-Bacterial Agents/pharmacology , Pseudomonas aeruginosa/pathogenicity , Virulence Factors/antagonists & inhibitors , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacokinetics , Bacterial Proteins/antagonists & inhibitors , Bacterial Proteins/chemistry , Bacterial Proteins/physiology , Binding Sites , Databases, Pharmaceutical , Drug Design , Drug Evaluation, Preclinical , Drug Resistance, Multiple, Bacterial , Humans , Hydrogen Bonding , Hydrophobic and Hydrophilic Interactions , Ligands , Microbial Sensitivity Tests , Molecular Dynamics Simulation , Pseudomonas aeruginosa/drug effects , Pseudomonas aeruginosa/physiology , Small Molecule Libraries , User-Computer Interface , Virulence Factors/chemistry , Virulence Factors/physiology
19.
Front Immunol ; 12: 757909, 2021.
Article in English | MEDLINE | ID: mdl-34804044

ABSTRACT

Salmonella Infantis has emerged as a major clinical pathogen causing gastroenteritis worldwide in recent years. As an intracellular pathogen, Salmonella has evolved to manipulate and benefit from the cell death signaling pathway. In this study, we discovered that S. Infantis inhibited apoptosis of infected Caco-2 cells by phosphorylating Akt. Notably, Akt phosphorylation was observed in a discontinuous manner: immediately 0.5 h after the invasion, then before peak cytosolic replication. Single-cell analysis revealed that the second phase was only induced by cytosolic hyper-replicating bacteria at 3-4 hpi. Next, Akt-mediated apoptosis inhibition was found to be initiated by Salmonella SopB. Furthermore, Akt phosphorylation increased mitochondrial localization of Bcl-2 to prevent Bax oligomerization on the mitochondrial membrane, maintaining the mitochondrial network homeostasis to resist apoptosis. In addition, S. Infantis induced pyroptosis, as evidenced by increased caspase-1 (p10) and GSDMS-N levels. In contrast, cells infected with the ΔSopB strain displayed faster but less severe pyroptosis and had less bacterial load. The results indicated that S. Infantis SopB-mediated Akt phosphorylation delayed pyroptosis, but aggravated its severity. The wild-type strain also caused more severe diarrhea and intestinal inflammatory damage than the ΔSopB strain in mice. These findings revealed that S. Infantis delayed the cells' death by intermittent activation of Akt, allowing sufficient time for replication, thereby causing more severe inflammation.


Subject(s)
Bacterial Load , Bacterial Proteins/physiology , Epithelial Cells/microbiology , Intestinal Mucosa/microbiology , Proto-Oncogene Proteins c-akt/metabolism , Salmonella enterica/physiology , Animals , Apoptosis , Bacterial Proteins/genetics , Cell Line, Tumor , Cytosol/microbiology , Epithelial Cells/metabolism , Epithelial Cells/pathology , Humans , Male , Mice, Inbred C57BL , Mitochondria/physiology , Phosphorylation , Protein Processing, Post-Translational , Pyroptosis , Salmonella Infections, Animal/microbiology , Salmonella enterica/enzymology , Salmonella enterica/genetics , Salmonella enterica/isolation & purification , Swine , Swine Diseases/microbiology , Vacuoles/microbiology
20.
Proc Natl Acad Sci U S A ; 118(45)2021 11 09.
Article in English | MEDLINE | ID: mdl-34725157

ABSTRACT

Neisseria meningitidis utilizes type IV pili (T4P) to adhere to and colonize host endothelial cells, a process at the heart of meningococcal invasive diseases leading to meningitis and sepsis. T4P are polymers of an antigenically variable major pilin building block, PilE, plus several core minor pilins that initiate pilus assembly and are thought to be located at the pilus tip. Adhesion of N. meningitidis to human endothelial cells requires both PilE and a conserved noncore minor pilin PilV, but the localization of PilV and its precise role in this process remains to be clarified. Here, we show that both PilE and PilV promote adhesion to endothelial vessels in vivo. The substantial adhesion defect observed for pilV mutants suggests it is the main adhesin. Consistent with this observation, superresolution microscopy showed the abundant distribution of PilV throughout the pilus. We determined the crystal structure of PilV and modeled it within the pilus filament. The small size of PilV causes it to be recessed relative to adjacent PilE subunits, which are dominated by a prominent hypervariable loop. Nonetheless, we identified a conserved surface-exposed adhesive loop on PilV by alanine scanning mutagenesis. Critically, antibodies directed against PilV inhibit N. meningitidis colonization of human skin grafts. These findings explain how N. meningitidis T4P undergo antigenic variation to evade the humoral immune response while maintaining their adhesive function and establish the potential of this highly conserved minor pilin as a vaccine and therapeutic target for the prevention and treatment of N. meningitidis infections.


Subject(s)
Bacterial Adhesion , Bacterial Proteins/physiology , Fimbriae, Bacterial/physiology , Neisseria meningitidis/physiology , Animals , Antibodies/therapeutic use , Bacterial Proteins/chemistry , Bacterial Proteins/ultrastructure , Cell Line , Drug Evaluation, Preclinical , Female , Fimbriae, Bacterial/chemistry , Fimbriae, Bacterial/ultrastructure , Humans , Meningococcal Infections/drug therapy , Mice, SCID
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