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1.
J Hered ; 115(3): 241-252, 2024 May 09.
Article in English | MEDLINE | ID: mdl-38567866

ABSTRACT

Although spiders are one of the most diverse groups of arthropods, the genetic architecture of their evolutionary adaptations is largely unknown. Specifically, ancient genome-wide duplication occurring during arachnid evolution ~450 mya resulted in a vast assembly of gene families, yet the extent to which selection has shaped this variation is understudied. To aid in comparative genome sequence analyses, we provide a chromosome-level genome of the Western black widow spider (Latrodectus hesperus)-a focus due to its silk properties, venom applications, and as a model for urban adaptation. We used long-read and Hi-C sequencing data, combined with transcriptomes, to assemble 14 chromosomes in a 1.46 Gb genome, with 38,393 genes annotated, and a BUSCO score of 95.3%. Our analyses identified high repetitive gene content and heterozygosity, consistent with other spider genomes, which has led to challenges in genome characterization. Our comparative evolutionary analyses of eight genomes available for species within the Araneoidea group (orb weavers and their descendants) identified 1,827 single-copy orthologs. Of these, 155 exhibit significant positive selection primarily associated with developmental genes, and with traits linked to sensory perception. These results support the hypothesis that several traits unique to spiders emerged from the adaptive evolution of ohnologs-or retained ancestrally duplicated genes-from ancient genome-wide duplication. These comparative spider genome analyses can serve as a model to understand how positive selection continually shapes ancestral duplications in generating novel traits today within and between diverse taxonomic groups.


Subject(s)
Black Widow Spider , Evolution, Molecular , Gene Duplication , Genome , Animals , Black Widow Spider/genetics , Chromosomes/genetics , Phylogeny , Transcriptome , Spiders/genetics , Biological Evolution , Molecular Sequence Annotation , Selection, Genetic
2.
Gigascience ; 112022 05 25.
Article in English | MEDLINE | ID: mdl-35639632

ABSTRACT

BACKGROUND: The black widow spider has both extraordinarily neurotoxic venom and three-dimensional cobwebs composed of diverse types of silk. However, a high-quality reference genome for the black widow spider was still unavailable, which hindered deep understanding and application of the valuable biomass. FINDINGS: We assembled the Latrodectus elegans genome, including a genome size of 1.57 Gb with contig N50 of 4.34 Mb and scaffold N50 of 114.31 Mb. Hi-C scaffolding assigned 98.08% of the genome to 14 pseudo-chromosomes, and with BUSCO, completeness analysis revealed that 98.4% of the core eukaryotic genes were completely present in this genome. Annotation of this genome identified that repetitive sequences account for 506.09 Mb (32.30%) and 20,167 protein-coding genes, and specifically, we identified 55 toxin genes and 26 spidroins and provide preliminary analysis of their composition and evolution. CONCLUSIONS: We present the first chromosome-level genome assembly of a black widow spider and provide substantial toxin and spidroin gene resources. These high-qualified genomic data add valuable resources from a representative spider group and contribute to deep exploration of spider genome evolution, especially in terms of the important issues on the diversification of venom and web-weaving pattern. The sequence data are also firsthand templates for further application of the spider biomass.


Subject(s)
Black Widow Spider , Fibroins , Animals , Black Widow Spider/genetics , Chromosomes , Fibroins/genetics , Genome , Silk/genetics , Venoms
3.
Sheng Wu Gong Cheng Xue Bao ; 37(2): 635-645, 2021 Feb 25.
Article in Chinese | MEDLINE | ID: mdl-33645161

ABSTRACT

One of the distinct characters of Latrodectus tredecimguttatus is that its toxic components exist not only in the venomous glands, but also in the tissues outside the venomous glands and even in the eggs. Investigation on the toxins outside the venomous glands can deepen our understanding of spider toxins and discover new lead molecules with important application prospects. In order to explore the low-abundance proteinaceous toxins in the L. tredecimguttatus eggs, we used bioinformatic strategies to mine a gene sequence encoding a peptide toxin from the transcriptome of L. tredecimguttatus eggs, and then heterologously expressed the gene successfully with a 3'-RACE combined with nest PCR strategy. Biological activity analyses indicated that the expressed peptide toxin, named latroeggtoxin-Ⅵ (LETX-Ⅵ), could inhibit Na⁺ channel currents in ND7/23 cells and promote dopamine release from PC12 cells, without obvious toxicity against Periplaneta americana and bacteria as well as fungi including Staphylococcus aureus and Candida albicans, demonstrating that LETX-Ⅵ is a mammal-specific neurotoxin with a potential application prospect in development of the tool reagents for neurobiological study and the drugs for treating related diseases.


Subject(s)
Black Widow Spider , Spider Venoms , Animals , Arthropod Proteins/genetics , Black Widow Spider/genetics , Cloning, Molecular , Rats , Spider Venoms/genetics , Transcriptome
4.
Chinese Journal of Biotechnology ; (12): 635-645, 2021.
Article in Chinese | WPRIM (Western Pacific) | ID: wpr-878588

ABSTRACT

One of the distinct characters of Latrodectus tredecimguttatus is that its toxic components exist not only in the venomous glands, but also in the tissues outside the venomous glands and even in the eggs. Investigation on the toxins outside the venomous glands can deepen our understanding of spider toxins and discover new lead molecules with important application prospects. In order to explore the low-abundance proteinaceous toxins in the L. tredecimguttatus eggs, we used bioinformatic strategies to mine a gene sequence encoding a peptide toxin from the transcriptome of L. tredecimguttatus eggs, and then heterologously expressed the gene successfully with a 3'-RACE combined with nest PCR strategy. Biological activity analyses indicated that the expressed peptide toxin, named latroeggtoxin-Ⅵ (LETX-Ⅵ), could inhibit Na⁺ channel currents in ND7/23 cells and promote dopamine release from PC12 cells, without obvious toxicity against Periplaneta americana and bacteria as well as fungi including Staphylococcus aureus and Candida albicans, demonstrating that LETX-Ⅵ is a mammal-specific neurotoxin with a potential application prospect in development of the tool reagents for neurobiological study and the drugs for treating related diseases.


Subject(s)
Animals , Rats , Arthropod Proteins/genetics , Black Widow Spider/genetics , Cloning, Molecular , Spider Venoms/genetics , Transcriptome
5.
Genes (Basel) ; 11(1)2020 01 12.
Article in English | MEDLINE | ID: mdl-31940922

ABSTRACT

Due to their abundance and ability to invade diverse environments, many arthropods have become pests of economic and health concern, especially in urban areas. Transcriptomic analyses of arthropod ovaries have provided insight into life history variation and fecundity, yet there are few studies in spiders despite their diversity within arthropods. Here, we generated a de novo ovarian transcriptome from 10 individuals of the western black widow spider (Latrodectus hesperus), a human health pest of high abundance in urban areas, to conduct comparative ovarian transcriptomic analyses. Biological processes enriched for metabolism-specifically purine, and thiamine metabolic pathways linked to oocyte development-were significantly abundant in L. hesperus. Functional and pathway annotations revealed overlap among diverse arachnid ovarian transcriptomes for highly-conserved genes and those linked to fecundity, such as oocyte maturation in vitellogenin and vitelline membrane outer layer proteins, hormones, and hormone receptors required for ovary development, and regulation of fertility-related genes. Comparative studies across arachnids are greatly needed to understand the evolutionary similarities of the spider ovary, and here, the identification of ovarian proteins in L. hesperus provides potential for understanding how increased fecundity is linked to the success of this urban pest.


Subject(s)
Black Widow Spider , Gene Expression Profiling , Ovary/metabolism , Transcriptome , Animals , Black Widow Spider/genetics , Black Widow Spider/metabolism , Female , Humans , Urban Health
6.
Toxins (Basel) ; 10(11)2018 Nov 02.
Article in English | MEDLINE | ID: mdl-30400202

ABSTRACT

As a black widow spider, Latrodectus tredecimguttatus has poisonous components not only in venomous glands but also in eggs. Our previous work had carried out a transcriptome analysis of the spider eggs in an attempt to probe into the molecular basis of the egg toxicity. A proteinaceous toxin, named Latroeggtoxin-V, was mined from the identified transcriptome. In this study, the gene of Latroeggtoxin-V was cloned and heterologously expressed, and the anticancer activity of the recombinant Latroeggtoxin-V (rLatroeggtoxin-V) was characterized. Activity assay found that rLatroeggtoxin-V could selectively act on breast cancer line MDA-MB-231 cells, not only arresting their cell cycle, inhibiting their proliferation and migration, but also inducing their apoptosis. Bioinformatics analysis suggested that Latroeggtoxin-V belongs to the ATPase inhibitor protein family and the further activity assay showed that the rLatroeggtoxin-V inhibited the activity of the Na⁺/K⁺-ATPase in MDA-MB-231 cells in a concentration-dependent manner, suggesting that the anticancer activity of Latroeggtoxin-V is based on its affecting the ion transport and receptor functions of Na⁺/K⁺-ATPase. The present work not only laid the foundation for the utilization of Latroeggtoxin-V in the anticancer drug development and the related fields, but also provided a new paradigm for exploration of the proteinaceous toxins under the direction of transcriptomics and bioinformatics.


Subject(s)
Black Widow Spider/genetics , Breast Neoplasms/pathology , Ovum/chemistry , Transcriptome , Amino Acid Sequence , Animals , Antineoplastic Agents/pharmacology , Apoptosis/drug effects , Base Sequence , Breast Neoplasms/enzymology , Cell Cycle Checkpoints/drug effects , Cell Line, Tumor , Cell Movement/drug effects , Cloning, Molecular , Drug Screening Assays, Antitumor , Female , Sequence Homology, Amino Acid , Sodium-Potassium-Exchanging ATPase/antagonists & inhibitors
7.
Sci Rep ; 8(1): 15956, 2018 10 29.
Article in English | MEDLINE | ID: mdl-30374029

ABSTRACT

Spider dragline silk is a remarkable material that shows excellent mechanical properties, diverse applications, biocompatibility and biodegradability. Transgenic silkworm technology was used to obtain four types of chimeric silkworm/spider (termed composite) silk fibres, including different lengths of recombinant Major ampullate Spidroin1 (re-MaSp1) or recombinant Major ampullate Spidroin2 (re-MaSp2) from the black widow spider, Latrodectus hesperus. The results showed that the overall mechanical properties of composite silk fibres improved as the re-MaSp1 chain length increased, and there were significant linear relationships between the mechanical properties and the re-MaSp1 chain length (p < 0.01). Additionally, a stronger tensile strength was observed for the composite silk fibres that included re-MaSp1, which only contained one type of repetitive motif, (GA)n/An, to provide tensile strength, compared with the silk fibres that includedre-MaSp2, which has the same protein chain length as re-MaSp1 but contains multiple types of repetitive motifs, GPGXX and (GA)n/An. Therefore, the results indicated that the nature of various repetitive motifs in the primary structure played an important role in imparting excellent mechanical properties to the protein-based silk fibres. A silk protein with a single type of repetitive motif and sufficiently long chains was determined to be an additional indispensable factor. Thus, this study forms a foundation for designing and optimizing the structure of re-silk protein using a heterologous expression system.


Subject(s)
Black Widow Spider/genetics , Bombyx/genetics , Fibroins/chemistry , Silk/chemistry , Animals , Animals, Genetically Modified , Bombyx/metabolism , Chromosomes, Artificial, Bacterial , Exons/genetics , Fibroins/genetics , Genes, Insect , Genes, Synthetic , Genetic Vectors , Genotype , Microscopy, Electron, Scanning , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Repetitive Sequences, Amino Acid , Silk/ultrastructure , Stress, Mechanical , Tensile Strength
8.
Proc Biol Sci ; 285(1884)2018 08 01.
Article in English | MEDLINE | ID: mdl-30068686

ABSTRACT

As urbanization drastically alters the natural landscape and generates novel habitats within cities, the potential for changes to gene flow for urban-dwelling species increases. The western black widow spider (Latrodectus hesperus) is a medically relevant urban adapter pest species, for which we have previously identified population genetic signatures consistent with urbanization facilitating gene flow, likely due to human-mediated transport. Here, in an analysis of 1.9 million genome-wide SNPs, we contrast broad-scale geographical analyses of 10 urban and 11 non-urban locales with fine-scale within-city analyses including 30 urban locales across the western USA. These hierarchical datasets enable us to test hypotheses of how urbanization impacts multiple urban cities and their genetic connectivity at different spatial scales. Coupled fine-scale and broad-scale analyses reveal contrasting patterns of high and low genetic differentiation among locales within cities as a result of low and high genetic connectivity, respectively, of these cities to the overall population network. We discuss these results as they challenge the use of cities as replicates of urban eco-evolution, and have implications for conservation and human health in a rapidly growing urban habitat.


Subject(s)
Black Widow Spider/genetics , Gene Flow , Animals , Cities , Genetic Variation , Polymorphism, Single Nucleotide , United States
9.
Chromosoma ; 126(5): 645-654, 2017 10.
Article in English | MEDLINE | ID: mdl-28233057

ABSTRACT

During meiosis I, homologous chromosomes join together to form bivalents. Through trial and error, bivalents achieve stable bipolar orientations (attachments) on the spindle that eventually allow the segregation of homologous chromosomes to opposite poles. Bipolar orientations are stable through tension generated by poleward forces to opposite poles. Unipolar orientations lack tension and are stereotypically not stable. The behavior of sex chromosomes during meiosis I in the male black widow spider Latrodectus mactans (Araneae, Theridiidae) challenges the principles governing such a scenario. We found that male L. mactans has two distinct X chromosomes, X1 and X2. The X chromosomes join together to form a connection that is present in prometaphase I but is lost during metaphase I, before the autosomes disjoin at anaphase I. We found that both X chromosomes form stable unipolar orientations to the same pole that assure their co-segregation at anaphase I. Using micromanipulation, immunofluorescence microscopy, and electron microscopy, we studied this unusual chromosome behavior to explain how it may fit the current dogma of chromosome distribution during cell division.


Subject(s)
Black Widow Spider/genetics , Chromosome Segregation , Meiosis , Sex Chromosomes/genetics , Animals , Male
10.
Toxins (Basel) ; 7(12): 5055-67, 2015 Nov 27.
Article in English | MEDLINE | ID: mdl-26633495

ABSTRACT

Widow spiders have received much attention due to the frequently reported human and animal injures caused by them. Elucidation of the molecular composition and action mechanism of the venoms and toxins has vast implications in the treatment of latrodectism and in the neurobiology and pharmaceutical research. In recent years, the studies of the widow spider venoms and the venom toxins, particularly the α-latrotoxin, have achieved many new advances; however, the mechanism of action of the venom toxins has not been completely clear. The widow spider is different from many other venomous animals in that it has toxic components not only in the venom glands but also in other parts of the adult spider body, newborn spiderlings, and even the eggs. More recently, the molecular basis for the toxicity outside the venom glands has been systematically investigated, with four proteinaceous toxic components being purified and preliminarily characterized, which has expanded our understanding of the widow spider toxins. This review presents a glance at the recent advances in the study on the venoms and toxins from the Latrodectus species.


Subject(s)
Black Widow Spider , Spider Venoms , Animals , Arthropod Proteins/analysis , Arthropod Proteins/genetics , Black Widow Spider/genetics , Research , Spider Venoms/chemistry , Spider Venoms/genetics , Spider Venoms/toxicity , Transcriptome
11.
PLoS One ; 10(11): e0142503, 2015.
Article in English | MEDLINE | ID: mdl-26606730

ABSTRACT

Noninvasive genetic sampling enables biomonitoring without the need to directly observe or disturb target organisms. This paper describes a novel and promising source of noninvasive spider and insect DNA from spider webs. Using black widow spiders (Latrodectus spp.) fed with house crickets (Acheta domesticus), we successfully extracted, amplified, and sequenced mitochondrial DNA from spider web samples that identified both spider and prey to species. Detectability of spider DNA did not differ between assays with amplicon sizes from 135 to 497 base pairs. Spider and prey DNA remained detectable at least 88 days after living organisms were no longer present on the web. Spider web DNA as a proof-of-concept may open doors to other practical applications in conservation research, pest management, biogeography studies, and biodiversity assessments.


Subject(s)
Black Widow Spider/genetics , DNA/genetics , Fibroins/genetics , Gryllidae/genetics , Polymerase Chain Reaction/methods , Animals , Conservation of Natural Resources , DNA/isolation & purification , DNA Barcoding, Taxonomic/methods , DNA Primers/chemical synthesis , Female , Fibroins/isolation & purification , Predatory Behavior/physiology
12.
Gen Comp Endocrinol ; 210: 63-80, 2015 Jan 01.
Article in English | MEDLINE | ID: mdl-25449184

ABSTRACT

Technological advancements in high-throughput sequencing have resulted in the production/public deposition of an ever-growing number of arthropod transcriptomes. While most sequencing projects have focused on hexapods, transcriptomes have also been generated for members of the Chelicerata. One chelicerate for which a large transcriptome has recently been released is the Western black widow Latrodectus hesperus, a member of the Araneae (true spiders). Here, a neuropeptidome for L. hesperus was predicted using this resource. Thirty-eight peptide-encoding transcripts were mined from the L. hesperus transcriptome, with 216 distinct peptides predicted from the deduced pre/preprohormones. The identified peptides included members of the allatostatin A, allatostatin B, allatostatin C, allatotropin, bursicon α, bursicon ß, CAPA/periviscerokinin/pyrokinin, CCHamide, corazonin, crustacean cardioactive peptide, crustacean hyperglycemic hormone/ion transport peptide, diuretic hormone 31, diuretic hormone 44, FMRFamide-like peptide (FLP), GSEFLamide, insulin-like peptide, neuropeptide F (NPF), orcokinin, proctolin, short neuropeptide F, SIFamide, sulfakinin and tachykinin-related peptide (TRP) families. Of particular note were the identifications of a carboxyl (C)-terminally extended corazonin, FLPs possessing -IMRFamide, -MMYFamide, and -MIHFamide C-termini, a NPF and a sulfakinin each ending in -RYamide rather than -RFamide, a precursor whose orcokinins include C-terminally amidated isoforms, and a collection of TRPs possessing -FXPXLamide rather than the stereotypical -FXGXLamide C-termini. The L. hesperus peptidome is by far the largest thus far published for any member of the Chelicerata. Taken collectively, these data serve as a reference for future neuropeptide discovery in the Araneae and provide a foundation for future studies of peptidergic control in L. hesperus and other spiders.


Subject(s)
Black Widow Spider/metabolism , Neuropeptides/metabolism , Proteome/analysis , Amino Acid Sequence , Animals , Black Widow Spider/genetics , Computer Simulation , FMRFamide/genetics , FMRFamide/metabolism , Insect Hormones/genetics , Insect Hormones/metabolism , Insect Proteins/genetics , Insect Proteins/metabolism , Invertebrate Hormones/genetics , Invertebrate Hormones/metabolism , Molecular Sequence Data , Neuropeptides/genetics , Oligopeptides/genetics , Oligopeptides/metabolism , Proteome/metabolism , Transcriptome
13.
J Vis Exp ; (93): e51618, 2014 Nov 03.
Article in English | MEDLINE | ID: mdl-25407635

ABSTRACT

Venoms are chemically complex secretions typically comprising numerous proteins and peptides with varied physiological activities. Functional characterization of venom proteins has important biomedical applications, including the identification of drug leads or probes for cellular receptors. Spiders are the most species rich clade of venomous organisms, but the venoms of only a few species are well-understood, in part due to the difficulty associated with collecting minute quantities of venom from small animals. This paper presents a protocol for the collection of venom from spiders using electrical stimulation, demonstrating the procedure on the Western black widow (Latrodectus hesperus). The collected venom is useful for varied downstream analyses including direct protein identification via mass spectrometry, functional assays, and stimulation of venom gene expression for transcriptomic studies. This technique has the advantage over protocols that isolate venom from whole gland homogenates, which do not separate genuine venom components from cellular proteins that are not secreted as part of the venom. Representative results demonstrate the detection of known venom peptides from the collected sample using mass spectrometry. The venom collection procedure is followed by a protocol for dissecting spider venom glands, with results demonstrating that this leads to the characterization of venom-expressed proteins and peptides at the sequence level.


Subject(s)
Black Widow Spider/chemistry , Black Widow Spider/genetics , Spider Venoms/chemistry , Spider Venoms/genetics , Amino Acid Sequence , Animals , Black Widow Spider/metabolism , Electric Stimulation , Female , Gene Expression Profiling/methods , Mass Spectrometry/methods , Microdissection , Molecular Sequence Data , Proteomics/methods , Spider Venoms/analysis , Spider Venoms/isolation & purification
14.
FEBS Lett ; 588(21): 3891-7, 2014 Nov 03.
Article in English | MEDLINE | ID: mdl-25217831

ABSTRACT

Black widow venom contains α-latrotoxin, infamous for causing intense pain. Combining 33 kb of Latrodectus hesperus genomic DNA with RNA-Seq, we characterized the α-latrotoxin gene and discovered a paralog, 4.5 kb downstream. Both paralogs exhibit venom gland specific transcription, and may be regulated post-transcriptionally via musashi-like proteins. A 4 kb intron interrupts the α-latrotoxin coding sequence, while a 10 kb intron in the 3' UTR of the paralog may cause non-sense-mediated decay. Phylogenetic analysis confirms these divergent latrotoxins diversified through recent tandem gene duplications. Thus, latrotoxin genes have more complex structures, regulatory controls, and sequence diversity than previously proposed.


Subject(s)
Black Widow Spider/genetics , Evolution, Molecular , Spider Venoms/genetics , Animals , DNA Transposable Elements , Female , Gene Expression Regulation , Introns/genetics , Regulatory Sequences, Nucleic Acid , Spider Venoms/metabolism
15.
BMC Genomics ; 15: 366, 2014 Jun 11.
Article in English | MEDLINE | ID: mdl-24916504

ABSTRACT

BACKGROUND: Animal venoms attract enormous interest given their potential for pharmacological discovery and understanding the evolution of natural chemistries. Next-generation transcriptomics and proteomics provide unparalleled, but underexploited, capabilities for venom characterization. We combined multi-tissue RNA-Seq with mass spectrometry and bioinformatic analyses to determine venom gland specific transcripts and venom proteins from the Western black widow spider (Latrodectus hesperus) and investigated their evolution. RESULTS: We estimated expression of 97,217 L. hesperus transcripts in venom glands relative to silk and cephalothorax tissues. We identified 695 venom gland specific transcripts (VSTs), many of which BLAST and GO term analyses indicate may function as toxins or their delivery agents. ~38% of VSTs had BLAST hits, including latrotoxins, inhibitor cystine knot toxins, CRISPs, hyaluronidases, chitinase, and proteases, and 59% of VSTs had predicted protein domains. Latrotoxins are venom toxins that cause massive neurotransmitter release from vertebrate or invertebrate neurons. We discovered ≥ 20 divergent latrotoxin paralogs expressed in L. hesperus venom glands, significantly increasing this biomedically important family. Mass spectrometry of L. hesperus venom identified 49 proteins from VSTs, 24 of which BLAST to toxins. Phylogenetic analyses showed venom gland specific gene family expansions and shifts in tissue expression. CONCLUSIONS: Quantitative expression analyses comparing multiple tissues are necessary to identify venom gland specific transcripts. We present a black widow venom specific exome that uncovers a trove of diverse toxins and associated proteins, suggesting a dynamic evolutionary history. This justifies a reevaluation of the functional activities of black widow venom in light of its emerging complexity.


Subject(s)
Arthropod Proteins/analysis , Black Widow Spider/genetics , Genomics/methods , Mass Spectrometry/methods , Spider Venoms/chemistry , Spider Venoms/genetics , Animals , Black Widow Spider/metabolism , Molecular Sequence Data , Phylogeny , Proteome/analysis , Sequence Analysis, RNA , Silk/genetics , Silk/metabolism , Spider Venoms/metabolism , Transcriptome
16.
BMC Genomics ; 15: 365, 2014 May 23.
Article in English | MEDLINE | ID: mdl-24916340

ABSTRACT

BACKGROUND: Spiders (Order Araneae) are essential predators in every terrestrial ecosystem largely because they have evolved potent arsenals of silk and venom. Spider silks are high performance materials made almost entirely of proteins, and thus represent an ideal system for investigating genome level evolution of novel protein functions. However, genomic level resources remain limited for spiders. RESULTS: We de novo assembled a transcriptome for the Western black widow (Latrodectus hesperus) from deeply sequenced cDNAs of three tissue types. Our multi-tissue assembly contained ~100,000 unique transcripts, of which > 27,000 were annotated by homology. Comparing transcript abundance among the different tissues, we identified 647 silk gland-specific transcripts, including the few known silk fiber components (e.g. six spider fibroins, spidroins). Silk gland specific transcripts are enriched compared to the entire transcriptome in several functions, including protein degradation, inhibition of protein degradation, and oxidation-reduction. Phylogenetic analyses of 37 gene families containing silk gland specific transcripts demonstrated novel gene expansions within silk glands, and multiple co-options of silk specific expression from paralogs expressed in other tissues. CONCLUSIONS: We propose a transcriptional program for the silk glands that involves regulating gland specific synthesis of silk fiber and glue components followed by protecting and processing these components into functional fibers and glues. Our black widow silk gland gene repertoire provides extensive expansion of resources for biomimetic applications of silk in industry and medicine. Furthermore, our multi-tissue transcriptome facilitates evolutionary analysis of arachnid genomes and adaptive protein systems.


Subject(s)
Black Widow Spider/genetics , Silk/genetics , Tissue Array Analysis/methods , Animals , Evolution, Molecular , Female , Gene Expression Profiling , Genes, Insect , High-Throughput Nucleotide Sequencing , Multigene Family , Organ Specificity , Phylogeny , Sequence Analysis, DNA , Silk/metabolism
17.
Gene ; 536(2): 366-75, 2014 Feb 25.
Article in English | MEDLINE | ID: mdl-24316130

ABSTRACT

Venoms have attracted enormous attention because of their potent physiological effects and dynamic evolution, including the convergent recruitment of homologous genes for venom expression. Here we provide novel evidence for the recruitment of genes from the Crustacean Hyperglycemic Hormone (CHH) and arthropod Ion Transport Peptide (ITP) superfamily for venom expression in black widow spiders. We characterized latrodectin peptides from venom gland cDNAs from the Western black widow spider (Latrodectus hesperus), the brown widow (Latrodectus geometricus) and cupboard spider (Steatoda grossa). Phylogenetic analyses of these sequences with homologs from other spider, scorpion and wasp venom cDNAs, as well as CHH/ITP neuropeptides, show latrodectins as derived members of the CHH/ITP superfamily. These analyses suggest that CHH/ITP homologs are more widespread in spider venoms, and were recruited for venom expression in two additional arthropod lineages. We also found that the latrodectin 2 gene and nearly all CHH/ITP genes include a phase 2 intron in the same position, supporting latrodectin's placement within the CHH/ITP superfamily. Evolutionary analyses of latrodectins suggest episodes of positive selection along some sequence lineages, and positive and purifying selection on specific codons, supporting its functional importance in widow venom. We consider how this improved understanding of latrodectin evolution informs functional hypotheses regarding its role in black widow venom as well as its potential convergent recruitment for venom expression across arthropods.


Subject(s)
Black Widow Spider/genetics , Insect Proteins/genetics , Neuropeptides/genetics , Spider Venoms/genetics , Amino Acid Sequence , Animals , Molecular Sequence Data , Phylogeny , Sequence Alignment
18.
BMC Genomics ; 14: 846, 2013 Dec 02.
Article in English | MEDLINE | ID: mdl-24295234

ABSTRACT

BACKGROUND: Orb-web and cob-web weaving spiders spin dragline silk fibers that are among the strongest materials known. Draglines are primarily composed of MaSp1 and MaSp2, two spidroins (spider fibrous proteins) expressed in the major ampullate (MA) silk glands. Prior genetic studies of dragline silk have focused mostly on determining the sequence of these spidroins, leaving other genetic aspects of silk synthesis largely uncharacterized. RESULTS: Here, we used deep sequencing to profile gene expression patterns in the Western black widow, Latrodectus hesperus. We sequenced millions of 3'-anchored "tags" of cDNAs derived either from MA glands or control tissue (cephalothorax) mRNAs, then associated the tags with genes by compiling a reference database from our newly constructed normalized L. hesperus cDNA library and published L. hesperus sequences. We were able to determine transcript abundance and alternative polyadenylation of each of three loci encoding MaSp1. The ratio of MaSp1:MaSp2 transcripts varied between individuals, but on average was similar to the estimated ratio of MaSp1:MaSp2 in dragline fibers. We also identified transcription of TuSp1 in MA glands, another spidroin family member that encodes the primary component of egg-sac silk, synthesized in tubuliform glands. In addition to the spidroin paralogs, we identified 30 genes that are more abundantly represented in MA glands than cephalothoraxes and represent new candidates for involvement in spider silk synthesis. CONCLUSIONS: Modulating expression rates of MaSp1 variants as well as MaSp2 and TuSp1 could lead to differences in mechanical properties of dragline fibers. Many of the newly identified candidate genes likely encode secreted proteins, suggesting they could be incorporated into dragline fibers or assist in protein processing and fiber assembly. Our results demonstrate previously unrecognized transcript complexity in spider silk glands.


Subject(s)
Black Widow Spider/genetics , Fibroins/genetics , Gene Expression Profiling/methods , Animals , Fibroins/biosynthesis , Gene Library , Sequence Analysis, DNA
19.
Evol Dev ; 15(3): 205-12, 2013 May.
Article in English | MEDLINE | ID: mdl-23607304

ABSTRACT

Variation in sperm production is strongly influenced by mating system across taxa. Recent work in spiders suggests that males of some species show termination of spermatogenesis before their adult molt and thus an inability to produce sperm after maturation. This permanent sperm depletion (PSD) has been hypothesized to co-occur with monogyny, genital mutilation, or sexual cannibalism because the maintenance of continual sperm supplies is not necessary for species where males can expect only one mating opportunity. Here we test this hypothesis in two congeners exhibiting genital mutilation: the sexually cannibalistic, monogynous Australian redback spider Latrodectus hasselti and the polygynous Western black widow Latrodectus hesperus. We report that PSD does not occur in adult males of either species, and show that males transfer sperm into their copulatory organs multiple times as adults. These data suggest evolutionary links between mating system and investment in sperm production may be more complex than currently appreciated.


Subject(s)
Black Widow Spider/physiology , Spermatozoa/metabolism , Animals , Biological Evolution , Black Widow Spider/genetics , Linear Models , Male , Reproduction/genetics , Reproduction/physiology , Sexual Behavior, Animal , Sperm Count , Spermatogenesis , Spiders/genetics , Spiders/physiology
20.
Mol Biol Evol ; 30(3): 589-601, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23155003

ABSTRACT

Spider silk fibers have impressive mechanical properties and are primarily composed of highly repetitive structural proteins (termed spidroins) encoded by a single gene family. Most characterized spidroin genes are incompletely known because of their extreme size (typically >9 kb) and repetitiveness, limiting understanding of the evolutionary processes that gave rise to their unusual gene architectures. The only complete spidroin genes characterized thus far form the dragline in the Western black widow, Latrodectus hesperus. Here, we describe the first complete gene sequence encoding the aciniform spidroin AcSp1, the primary component of spider prey-wrapping fibers. L. hesperus AcSp1 contains a single enormous (∼19 kb) exon. The AcSp1 repeat sequence is exceptionally conserved between two widow species (∼94% identity) and between widows and distantly related orb-weavers (∼30% identity), consistent with a history of strong purifying selection on its amino acid sequence. Furthermore, the 16 repeats (each 371-375 amino acids long) found in black widow AcSp1 are, on average, >99% identical at the nucleotide level. A combination of stabilizing selection on amino acid sequence, selection on silent sites, and intragenic recombination likely explains the extreme homogenization of AcSp1 repeats. In addition, phylogenetic analyses of spidroin paralogs support a gene duplication event occurring concomitantly with specialization of the aciniform glands and the tubuliform glands, which synthesize egg-case silk. With repeats that are dramatically different in length and amino acid composition from dragline spidroins, our L. hesperus AcSp1 expands the knowledge base for developing silk-based biomimetic technologies.


Subject(s)
Black Widow Spider/genetics , Fibroins/genetics , Amino Acid Sequence , Animals , Conserved Sequence , Likelihood Functions , Molecular Sequence Data , Phylogeny , Repetitive Sequences, Amino Acid , Sequence Analysis, DNA
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