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1.
Physiol Plant ; 176(3): e14315, 2024.
Article in English | MEDLINE | ID: mdl-38693794

ABSTRACT

Rapeseed (Brassica napus L.) is an oil-containing crop of great economic value but with considerable nitrogen requirement. Breeding root systems that efficiently absorb nitrogen from the soil could be a driver to ensure genetic gains for more sustainable rapeseed production. The aim of this study is to identify genomic regions that regulate root morphology in response to nitrate availability. The natural variability offered by 300 inbred lines was screened at two experimental locations. Seedlings grew hydroponically with low or elevated nitrate levels. Fifteen traits related to biomass production and root morphology were measured. On average across the panel, a low nitrate level increased the root-to-shoot biomass ratio and the lateral root length. A large phenotypic variation was observed, along with important heritability values and genotypic effects, but low genotype-by-nitrogen interactions. Genome-wide association study and bulk segregant analysis were used to identify loci regulating phenotypic traits. The first approach nominated 319 SNPs that were combined into 80 QTLs. Three QTLs identified on the A07 and C07 chromosomes were stable across nitrate levels and/or experimental locations. The second approach involved genotyping two groups of individuals from an experimental F2 population created by crossing two accessions with contrasting lateral root lengths. These individuals were found in the tails of the phenotypic distribution. Co-localized QTLs found in both mapping approaches covered a chromosomal region on the A06 chromosome. The QTL regions contained some genes putatively involved in root organogenesis and represent selection targets for redesigning the root morphology of rapeseed.


Subject(s)
Brassica napus , Nitrogen , Phenotype , Plant Roots , Quantitative Trait Loci , Plant Roots/genetics , Plant Roots/anatomy & histology , Plant Roots/growth & development , Plant Roots/metabolism , Nitrogen/metabolism , Quantitative Trait Loci/genetics , Brassica napus/genetics , Brassica napus/growth & development , Brassica napus/anatomy & histology , Brassica napus/metabolism , Genotype , Genome-Wide Association Study , Polymorphism, Single Nucleotide/genetics , Biomass , Nitrates/metabolism , Chromosome Mapping , Genetic Variation
2.
Braz. J. Pharm. Sci. (Online) ; 58: e18785, 2022. graf
Article in English | LILACS | ID: biblio-1364421

ABSTRACT

We were carried out to investigate the efficacy of Rape (Rapeseed, Brassica napus L.) flower on BPH (benign prostatic hyperplasia) in rats. We found that the extract from Rape flower prevented hyperplasia in testosterone-induced BPH model, the relevant animal model of human BPH. Extract reduced the weight of prostate and induced significantly cell apoptosis in prostate in BPH model. In addition, the extract controlled expression of TGF-ß1 in prostate gland and promoted urinary output in dose-dependence in BPH model. Our data provide that Rape flower may be useful for treatment of BPH


Subject(s)
Animals , Male , Rats , Prostatic Hyperplasia/pathology , Efficacy , Brassica napus/anatomy & histology , Flowers/classification , Testosterone , Plant Extracts/analysis , Models, Animal
3.
Bioengineered ; 12(2): 9341-9355, 2021 12.
Article in English | MEDLINE | ID: mdl-34951555

ABSTRACT

Drought is one of the most important abiotic stressors that affect crop yield. Therefore, the aim of the present study was to investigate correlations between germination-stage drought tolerance and the microscopic testa (i.e., seed coat) characteristics (color and papilla morphology) and imbibition abilities of 35 rapeseed (Brassica napus L.) accessions. After 2 h imbibition, seed water uptake (fresh weight increase) was significantly positively correlated with testa hue (HHSB), brightness (BHSB,), blue (BRGB), and lightness (L*), with correlation coefficients of 0.38, 0.34, 0.53, and 0.36, respectively, and significantly negatively correlated with saturation (SHSB), greenness-redness (a*), blueness-yellowness (b*), magenta (M), and yellow components (Y), with correlation coefficients of -0.53, -0.40, -0.53, -0.39, and -0.55, respectively. Furthermore, 5-h seed water uptake was significantly positively correlated with number of papillae (No.P), mean papillae area (APA), the papillae area ratio (PAR), gray value of red channel of papillae, with correlation coefficients of 33, 0.36, 0.43, and 0.43, respectively. Under drought conditions, genotypes with more rapid water absorption exhibited higher germination rates and stronger drought tolerance, and the germination rate and drought tolerance of black-seeded accessions were highest, followed by red-seeded accessions and then yellow-seeded accessions, which exhibited the lowest germination rate and drought tolerance. Germination rate was significantly negatively correlated with BRGB, HHSB, L*, Dg, and Db and significantly positively correlated with SHSB and Y, regardless of drought conditions. At the germination stage, DbTP was negatively correlated with drought tolerance.


Subject(s)
Adaptation, Physiological , Brassica napus/anatomy & histology , Brassica napus/physiology , Droughts , Germination , Pigmentation , Seeds/anatomy & histology , Water/metabolism , Ecotype , Electric Conductivity , Principal Component Analysis
4.
Int J Mol Sci ; 22(9)2021 Apr 24.
Article in English | MEDLINE | ID: mdl-33923211

ABSTRACT

A critical barrier to improving crop yield is the trade-off between seed weight (SW) and seed number (SN), which has been commonly reported in several crops, including Brassica napus. Despite the agronomic relevance of this issue, the molecular factors involved in the interaction between SW and SN are largely unknown in crops. In this work, we performed a detailed transcriptomic analysis of 48 seed samples obtained from two rapeseed spring genotypes subjected to different source-sink (S-S) ratios in order to examine the relationship between SW and SN under different field conditions. A multifactorial analysis of the RNA-seq data was used to identify a group of 1014 genes exclusively regulated by the S-S ratio. We found that a reduction in the S-S ratio during seed filling induces the expression of genes involved in sucrose transport, seed weight, and stress responses. Moreover, we identified five co-expression modules that are positively correlated with SW and negatively correlated with SN. Interestingly, one of these modules was significantly enriched in transcription factors (TFs). Furthermore, our network analysis predicted several NAC TFs as major hubs underlying SW and SN compensation. Taken together, our study provides novel insights into the molecular factors associated with the SW-SN relationship in rapeseed and identifies TFs as potential targets when improving crop yield.


Subject(s)
Brassica napus/genetics , Gene Expression Regulation, Plant , Plant Proteins/metabolism , Seeds/genetics , Transcriptome , Brassica napus/anatomy & histology , Brassica napus/growth & development , Genotype , Organ Size , Plant Proteins/genetics , Quantitative Trait Loci , Seeds/anatomy & histology , Seeds/chemistry , Seeds/growth & development
5.
Int J Mol Sci ; 22(2)2021 Jan 11.
Article in English | MEDLINE | ID: mdl-33440867

ABSTRACT

The swollen root is an important agronomic trait and is a determinant of yield for turnips, which are cultivated as both vegetables and fodder. However, the genetic mechanism of swollen root formation is poorly understood. In this study, we analyzed the F2 and BC1P2 populations derived from a cross between "10601" (European turnip with swollen root, Brassica rapa ssp. rapifera, AA, 2n = 2× = 20) and "10603" (Chinese cabbage with normal root, Brassica rapa ssp. pekinensis, AA, 2n = 2× = 20), and suggested that the swollen root is a quantitative trait. Two major quantitative trait loci (QTLs), FR1.1 (Fleshy root 1.1) and FR7.1 (Fleshy root 7.1), were identified by QTL-seq analysis and further confirmed by QTL mapping in F2 and BC1P2 populations. The QTL FR1.1 with a likelihood of odd (LOD) of 7.01 explained 17.2% of the total phenotypic variations for root diameter and the QTL FR7.1 explained 23.0% (LOD = 9.38) and 31.0% (LOD = 13.27) of the total phenotypic variations in root diameter and root weight, respectively. After a recombinant screening, the major QTL FR7.1 was further narrowed down to a 220 kb region containing 47 putative genes. A candidate gene, Bra003652, which is a homolog of AT1G78240 that plays an essential role in cell adhesion and disorganized tumor-like formation in Arabidopsis thaliana, was identified in this region. In addition, expression and parental allele analysis supported that Bra003652 was a possible candidate gene of QTL FR7.1 for swollen root formation in turnip. Our research may provide new insight into the molecular mechanism of swollen root formation in root crops.


Subject(s)
Brassica napus/growth & development , Brassica napus/genetics , Chromosome Mapping , Plant Roots/growth & development , Plant Roots/genetics , Quantitative Trait Loci , Brassica napus/anatomy & histology , Genes, Plant , Genetic Linkage , Genetic Markers , Histocytochemistry , Phenotype , Plant Roots/anatomy & histology , Quantitative Trait, Heritable
6.
PLoS One ; 16(1): e0243292, 2021.
Article in English | MEDLINE | ID: mdl-33434207

ABSTRACT

Two winter rapeseed cultivars, "NS" (cold tolerant) and "NF" (cold sensitive), were used to reveal the morphological, physiological, and proteomic characteristics in leaves of plants after treatment at -4°C for 12 h(T1) and 24 h(T2), and at room temperature(T0), to understand the molecular mechanisms of cold tolerance. Antioxidant activity and osmotic adjustment ability were higher, and plasma membrane injury was less obvious, in NS than in NF under cold stress. We detected different abundant proteins (DAPs) related to cold tolerance in winter rapeseed through data-independent acquisition (DIA). Compared with NF, A total of 1,235 and 1,543 DAPs were identified in the NSs under T1 and T2, respectively. Compared with NF, 911 proteins were more abundant in NS only after cold treatment. Some of these proteins were related to ROS scavenging through four metabolic pathways: lysine degradation; phenylalanine, tyrosine, and tryptophan; flavonoid biosynthesis; and ubiquinone and other terpenoid-quinone biosynthesis. Analysis of these proteins in the four candidate pathways revealed that they were rapidly accumulated to quickly enhance ROS scavenging and improve the cold tolerance of NS. These proteins were noticeably more abundant during the early stage of cold stress, which was critical for avoiding ROS damage.


Subject(s)
Adaptation, Physiological , Brassica napus/metabolism , Brassica napus/physiology , Cold Temperature , Free Radical Scavengers/metabolism , Proteomics , Reactive Oxygen Species/metabolism , Seasons , Brassica napus/anatomy & histology , Brassica napus/genetics , Gene Ontology , Molecular Sequence Annotation , Plant Proteins/metabolism , Reproducibility of Results , Seedlings/physiology , Transcription, Genetic
7.
Plant Reprod ; 33(3-4): 143-158, 2020 12.
Article in English | MEDLINE | ID: mdl-32651727

ABSTRACT

KEY MESSAGE: In vitro embryo development is highly plastic; embryo cell fate can be re-established in tissue culture through different pathways. In most angiosperms, embryo development from the single-celled zygote follows a defined pattern of cell divisions in which apical (embryo proper) and basal (root and suspensor) cell fates are established within the first cell divisions. By contrast, embryos that are induced in vitro in the absence of fertilization show a less regular initial cell division pattern yet develop into histodifferentiated embryos that can be converted into seedlings. We used the Brassica napus microspore embryogenesis system, in which the male gametophyte is reprogrammed in vitro to form haploid embryos, to identify the developmental fates of the different types of embryogenic structures found in culture. Using time-lapse imaging of LEAFY COTYLEDON1-expressing cells, we show that embryogenic cell clusters with very different morphologies are able to form haploid embryos. The timing of surrounding pollen wall (exine) rupture is a major determinant of cell fate in these clusters, with early exine rupture leading to the formation of suspensor-bearing embryos and late rupture to suspensorless embryos. In addition, we show that embryogenic callus, which develops into suspensor-bearing embryos, initially expresses transcripts associated with both basal- and apical-embryo cell fates, suggesting that these two cell fates are fixed later in development. This study reveals the inherent plasticity of in vitro embryo development and identifies new pathways by which embryo cell fate can be established.


Subject(s)
Brassica napus , Seeds , Brassica napus/anatomy & histology , Brassica napus/embryology , Brassica napus/genetics , Cell Plasticity , Haploidy , Pollen , Seeds/anatomy & histology , Totipotent Stem Cells/cytology
8.
BMC Plant Biol ; 20(1): 8, 2020 Jan 06.
Article in English | MEDLINE | ID: mdl-31906856

ABSTRACT

BACKGROUND: Photoperiod and/or thermo-sensitive male sterility is an effective pollination control system in crop two-line hybrid breeding. We previously discovered the spontaneous mutation of a partially male sterile plant and developed a thermo-sensitive genic male sterile (TGMS) line 373S in Brassica napus L. The present study characterized this TGMS line through cytological observation, photoperiod/ temperature treatments, and genetic investigation. RESULTS: Microscopic observation revealed that the condensed cytoplasm and irregular exine of microspores and the abnormal degradation of tapetum are related to pollen abortion. Different temperature and photoperiod treatments in field and growth cabinet conditions indicated that the fertility alteration of 373S was mainly caused by temperature changes. The effects of photoperiod and interaction between temperature and photoperiod were insignificant. The critical temperature leading to fertility alteration ranged from 10 °C (15 °C/5 °C) to 12 °C (17 °C/7 °C), and the temperature-responding stage was coincident with anther development from pollen mother cell formation to meiosis stages. Genetic analysis indicated that the TGMS trait in 373S was controlled by one pair of genes, with male sterility as the recessive. Multiplex PCR analysis revealed that the cytoplasm of 373S is pol type. CONCLUSIONS: Our study suggested that the 373S line in B. napus has a novel thermo-sensitive gene Bnmst1 in Pol CMS cytoplasm background, and its fertility alteration is mainly caused by temperature changes. Our results will broaden the TGMS resources and lay the foundation for two-line hybrid breeding in B. napus.


Subject(s)
Brassica napus/genetics , Flowers/cytology , Plant Infertility/genetics , Brassica napus/anatomy & histology , Flowers/genetics , Genes, Plant , Photoperiod , Pollen/genetics , Temperature
9.
Theor Appl Genet ; 133(3): 771-783, 2020 Mar.
Article in English | MEDLINE | ID: mdl-31844964

ABSTRACT

KEY MESSAGE: A candidate branching-controlling gene for qDBA09 was identified after delimiting a Brassica napus recessive locus within a 270-kb interval on chromosome A09. Although branching is an important trait associated with the adaptation and yield potential of rapeseed (Brassica napus), the genetic mechanisms underlining branching in this crop remain poorly understood. In this study, we characterized a naturally occurring rapeseed mutant, db1, which showed an ultrahigh branching density phenotype. By combining bulked segregant analysis (BSA) and the Brassica 60K SNP BeadChip Array, we identified two major quantitative trait loci (QTLs), qDBA09 and qDBC06, which were subsequently confirmed using the traditional QTL-mapping approach. Analysis of 208 individuals from a BC1F3 population indicated that the qDBA09 locus is a single Mendelian factor and that the dense branching phenotype is controlled by a single recessive gene. Furthermore, QTL analysis confirmed that qDBA09 explained between 9.5 and 70.5% of the variation in branching-related traits. Using 7785 individuals from the BC1F3 population, we mapped qDBA09 to a DNA fragment of approximately 270 kb in length that contained 27 predicted genes, three of which were identified as potentially involved in the control of the dense branching trait. Based on the reported function of these genes, together with sequence comparisons and co-segregation analysis, we identified a potential candidate gene for the qDBA09 locus. The present findings lay the foundations for further in-depth research on the branching mechanisms of B. napus.


Subject(s)
Brassica napus/genetics , Brassica napus/anatomy & histology , Brassica napus/growth & development , Chromosome Mapping , Chromosomes, Plant , Crosses, Genetic , Genes, Plant , Genes, Recessive , Genetic Association Studies , Genetic Linkage , Genomics , Mutation , Phenotype , Polymorphism, Single Nucleotide , Quantitative Trait Loci
10.
PLoS One ; 14(8): e0221699, 2019.
Article in English | MEDLINE | ID: mdl-31461492

ABSTRACT

The phenotypic, biochemical and genetic variability was studied in M2-M5 generations of ethyl methansulfonat (EMS, 0.2%) mutagenized rapeseed lines generated from canola, '00', B. napus cv. Vikros. EMS mutagenesis induced extensive diversity in morphological and agronomic traits among mutant progeny resulted in selection of EMS populations of B. napus- and B. rapa-morphotypes. The seeds of the obtained mutant lines were high-protein, low in oil and stabilized in contents of main fatty acids which make them useful for feed production. Despite the increased level of various meiotic abnormalities revealed in EMS populations, comparative karyotype analysis and FISH-based visualization of 45S and 5S rDNA indicated a high level of karyotypic stability in M2-M5 plants, and therefore, the obtained mutant lines could be useful in further rapeseed improvement. The revealed structural chromosomal reorganizations in karyotypes of several plants of B. rapa-type indicate that rapeseed breeding by chemical mutagenesis can result in cytogenetic instability in the mutant progeny, and therefore, it should include the karyotype examination. Our findings demonstrate that EMS at low concentrations has great potential in rapeseed improvement.


Subject(s)
Brassica napus/genetics , Genetic Variation , Genome, Plant , Mutagenesis/genetics , Mutation/genetics , Alleles , Brassica napus/anatomy & histology , Chromosomes, Plant/genetics , DNA, Ribosomal/genetics , Fatty Acids/analysis , Karyotype , Meiosis , Phenotype , Pollen/cytology , Pollen/ultrastructure , Seeds/metabolism
11.
BMC Plant Biol ; 19(1): 324, 2019 Jul 19.
Article in English | MEDLINE | ID: mdl-31324149

ABSTRACT

BACKGROUND: Leaf shape development research is important because leaf shapes such as moderate curling can help to improve light energy utilization efficiency. Leaf growth and development includes initiation of the leaf primordia and polar differentiation of the proximal-distal, adaxial-abaxial, and centrolateral axes. Changes in leaf adaxial-abaxial polarity formation, auxin synthesis and signaling pathways, and development of sclerenchyma and cuticle can cause abnormal leaf shapes such as up-curling leaf. Although many genes related to leaf shape development have been reported, the detailed mechanism of leaf development is still unclear. Here, we report an up-curling leaf mutant plant from our Brassica napus germplasm. We studied its inheritance, mapped the up-curling leaf locus BnUC1, built near-isogenic lines for the Bnuc1 mutant, and evaluated the effect of the dominant leaf curl locus on leaf photosynthetic efficiency and agronomic traits. RESULTS: The up-curling trait was controlled by one dominant locus in a progeny population derived from NJAU5734 and Zhongshuang 11 (ZS11). This BnUC1 locus was mapped in an interval of 2732.549 kb on the A05 chromosome of B. napus using Illumina Brassica 60 K Bead Chip Array. To fine map BnUC1, we designed 201 simple sequence repeat (SSR) primers covering the mapping interval. Among them, 16 polymorphic primers that narrowed the mapping interval to 54.8 kb were detected using a BC6F2 family population with 654 individuals. We found six annotated genes in the mapping interval using the B. napus reference genome, including BnaA05g18250D and BnaA05g18290D, which bioinformatics and gene expression analyses predicted may be responsible for leaf up-curling. The up-curling leaf trait had negative effects on the agronomic traits of 30 randomly selected individuals from the BC6F2 population. The near-isogenic line of the up-curling leaf (ZS11-UC1) was constructed to evaluate the effect of BnUC1 on photosynthetic efficiency. The results indicated that the up-curling leaf trait locus was beneficial to improve the photosynthetic efficiency. CONCLUSIONS: An up-curling leaf mutant Bnuc1 was controlled by one dominant locus BnUC1. This locus had positive effects on photosynthetic efficiency, negative effects on some agronomic traits, and may help to increase planting density in B. napus.


Subject(s)
Brassica napus/genetics , Genes, Plant/genetics , Plant Leaves/anatomy & histology , Brassica napus/anatomy & histology , Chlorophyll/metabolism , Chromosome Mapping , Genes, Plant/physiology , Genetic Loci , Mutation , Photosynthesis , Real-Time Polymerase Chain Reaction
12.
Plant Cell Rep ; 38(8): 883-897, 2019 Aug.
Article in English | MEDLINE | ID: mdl-31011789

ABSTRACT

KEY MESSAGE: BnaIAA7 crosstalk with BR signaling is mediated by the interaction between BnaARF8 and BnaBZR1 to regulate rapeseed plant morphogenesis. Auxin (indole-3-acetic acid, IAA) and brassinosteroids (BRs) are essential regulators of plant morphogenesis. However, their roles in rapeseed have not been reported. Here, we identified an extremely dwarf1 (ed1) mutant of rapeseed that displays reduced stature, short hypocotyls, as well as wavy and curled leaves. We isolated ED1 by map-based cloning, and found that it encodes a protein homologous to AtIAA7. ED1 acts as a repressor of IAA signaling, and IAA induces its degradation through its degron motif. A genomic-synteny analysis revealed that ED1 has four homologs in rapeseed, but two were not expressed. Analyses of transcriptomes and of various mutant BnaIAA7s in transgenic plants revealed that the three expressed BnaIAA7 homologs had diverse expression patterns. ED1/BnaC05.IAA7 predominantly functioned in stem elongation, BnaA05.IAA7 was essential for reproduction, while BnaA03.IAA7 had the potential to reduce plant height. Physical interaction assays revealed that the three BnaIAA7 homologs interacted in different ways with BnaTIRs/AFBs and BnaARFs, which may regulate the development of specific organs. Furthermore, BnaARF8 could directly interact with the BnaIAA7s and BnaBZR1. We propose that BnaIAA7s interact with BR signaling via BnaARF8 and BnaBZR1 to regulate stem elongation in rapeseed.


Subject(s)
Brassica napus/metabolism , Brassinosteroids/metabolism , Indoleacetic Acids/metabolism , Plant Proteins/metabolism , Brassica napus/anatomy & histology , Gene Expression Regulation, Plant/genetics , Gene Expression Regulation, Plant/physiology , Plant Proteins/genetics , Signal Transduction/genetics , Signal Transduction/physiology
13.
Plant J ; 98(3): 524-539, 2019 05.
Article in English | MEDLINE | ID: mdl-30664290

ABSTRACT

Rapeseed (Brassica napus L.) is a model plant for polyploid crop research and the second-leading source of vegetable oil worldwide. Silique length (SL) and seed weight are two important yield-influencing traits in rapeseed. Using map-based cloning, we isolated qSLWA9, which encodes a P450 monooxygenase (BnaA9.CYP78A9) and functions as a positive regulator of SL. The expression level of BnaA9.CYP78A9 in silique valves of the long-silique variety is much higher than that in the regular-silique variety, which results in elongated cells and a prolonged phase of silique elongation. Plants of the long-silique variety and transgenic plants with high expression of BnaA9.CYP78A9 had a higher concentration of auxin in the developing silique; this induced a number of auxin-related genes but no genes in well-known auxin biosynthesis pathways, suggesting that BnaA9.CYP78A9 may influence auxin concentration by affecting auxin metabolism or an unknown auxin biosynthesis pathway. A 3.7-kb CACTA-like transposable element (TE) inserted in the 3.9-kb upstream regulatory sequence of BnaA9.CYP78A9 elevates the expression level, suggesting that the CACTA-like TE acts as an enhancer to stimulate high gene expression and silique elongation. Marker and sequence analysis revealed that the TE in B. napus had recently been introgressed from Brassica rapa by interspecific hybridization. The insertion of the TE is consistently associated with long siliques and large seeds in both B. napus and B. rapa collections. However, the frequency of the CACTA-like TE in rapeseed varieties is still very low, suggesting that this allele has not been widely used in rapeseed breeding programs and would be invaluable for yield improvement in rapeseed breeding.


Subject(s)
Brassica napus/anatomy & histology , Brassica napus/metabolism , Brassica napus/genetics , DNA Transposable Elements/genetics , Plants, Genetically Modified/anatomy & histology , Plants, Genetically Modified/genetics , Plants, Genetically Modified/metabolism , Quantitative Trait Loci/genetics , Seeds/anatomy & histology , Seeds/genetics , Seeds/metabolism
14.
Plant Physiol ; 179(1): 329-347, 2019 01.
Article in English | MEDLINE | ID: mdl-30455286

ABSTRACT

Rapeseed (Brassica napus) is an important oil crop worldwide. However, severe inhibition of rapeseed production often occurs in the field due to nitrogen (N) deficiency. The root system is the main organ to acquire N for plant growth, but little is known about the mechanisms underlying rapeseed root adaptions to N deficiency. Here, dynamic changes in root architectural traits of N-deficient rapeseed plants were evaluated by 3D in situ quantification. Root proteome responses to N deficiency were analyzed by the tandem mass tag-based proteomics method, and related proteins were characterized further. Under N deficiency, rapeseed roots become longer, with denser cells in the meristematic zone and larger cells in the elongation zone of root tips, and also become softer with reduced solidity. A total of 171 and 755 differentially expressed proteins were identified in short- and long-term N-deficient roots, respectively. The abundance of proteins involved in cell wall organization or biogenesis was highly enhanced, but most identified peroxidases were reduced in the N-deficient roots. Notably, peroxidase activities also were decreased, which might promote root elongation while lowering the solidity of N-deficient roots. These results were consistent with the cell wall components measured in the N-deficient roots. Further functional analysis using transgenic Arabidopsis (Arabidopsis thaliana) plants demonstrated that the two root-related differentially expressed proteins contribute to the enhanced root growth under N deficiency conditions. These results provide insights into the global changes of rapeseed root responses to N deficiency and may facilitate the development of rapeseed cultivars with high N use efficiency through root-based genetic improvements.


Subject(s)
Adaptation, Physiological , Brassica napus/growth & development , Nitrogen/metabolism , Plant Proteins/metabolism , Stress, Physiological , Brassica napus/anatomy & histology , Brassica napus/physiology , Cell Wall/metabolism , Peroxidase/metabolism , Plant Proteins/genetics , Plant Proteins/physiology , Plant Roots/anatomy & histology , Plant Roots/growth & development , Plant Roots/physiology , Proteomics
15.
New Phytol ; 222(2): 837-851, 2019 04.
Article in English | MEDLINE | ID: mdl-30536633

ABSTRACT

Plant architecture is the key factor affecting overall yield in many crops. The genetic basis underlying plant architecture in rapeseed (Brassica napus), a key global oil crop, is elusive. We characterized an ethyl methanesulfonate (EMS)-mutagenized rapeseed mutant, sca, which had multiple phenotypic alterations, including crinkled leaves, semi-dwarf stature, narrow branch angles and upward-standing siliques. We identified the underlying gene, which encodes an Aux/IAA protein (BnaA3.IAA7). A G-to-A mutation changed the glycine at the 84th position to glutamic acid (G84E), disrupting the conserved degron motif GWPPV and reducing the affinity between BnaA3.IAA7 and TIR1 (TRANSPORT INHIBITOR RESPONSE 1) in an auxin dosage-dependent manner. This change repressed the degradation of BnaA3.IAA7 and therefore repressed auxin signaling at low levels of auxin that reduced the length of internodes. The G84E mutation reduced branch angles by enhancing the gravitropic response. The heterozygote +/sca closely resembled a proposed ideal plant architecture, displaying strong yield heterosis through single-locus overdominance by improving multiple component traits. Our findings demonstrate that a weak gain-of-function mutation in BnaA3.IAA7 contributes to yield heterosis by improving plant architecture and would be valuable for breeding superior rapeseed hybrid cultivars and such a mutation may increase the yield in other Brassica crops.


Subject(s)
Brassica napus/anatomy & histology , Brassica napus/genetics , Genes, Plant , Hybrid Vigor/genetics , Indoleacetic Acids/metabolism , Signal Transduction , Cell Nucleus/metabolism , Genetic Loci , Gravitropism , Heterozygote , Homozygote , Inheritance Patterns/genetics , Mutation/genetics , Phenotype , Plant Proteins/genetics , Plant Proteins/metabolism , Proteolysis , Signal Transduction/genetics
16.
Theor Appl Genet ; 131(12): 2699-2708, 2018 Dec.
Article in English | MEDLINE | ID: mdl-30219987

ABSTRACT

KEY MESSAGE: BnA10.LMI1 positively regulates the development of leaf lobes in Brassica napus, and cis-regulatory divergences cause the different allele effects. Leaf shape is an important agronomic trait, and large variations in this trait exist within the Brassica germplasm. The lobed leaf is a unique morphological characteristic for Brassica improvement. Nevertheless, the molecular basis of leaf lobing in Brassica is poorly understood. Here, we show that an incompletely dominant locus, BnLLA10, is responsible for the lobed-leaf shape in rapeseed. A LATE MERISTEM IDENTITY1 (LMI1)-like gene (BnA10.LMI1) encoding an HD-Zip I transcription factor is the causal gene underlying the BnLLA10 locus. Sequence analysis of parental alleles revealed no sequence variations in the coding sequences, whereas abundant variations were identified in the regulatory region. Consistent with this finding, the expression levels of BnLMI1 were substantially elevated in the lobed-leaf parent compared with its near-isogenic line. The knockout mutations of BnA10.LMI1 gene were induced using the CRISPR/Cas9 system in both HY (the lobed-leaf parent) and J9707 (serrated leaf) genetic backgrounds. BnA10.LMI1 null mutations in the HY background were sufficient to produce unlobed leaves, whereas null mutations in the J9707 background showed no obvious changes in leaf shape compared with the control. Collectively, our results indicate that BnA10.LMI1 positively regulates the development of leaf lobes in B. napus, with cis-regulatory divergences causing the different allelic effects, providing new insights into the molecular mechanism of leaf lobe formation in Brassica crops.


Subject(s)
Brassica napus/genetics , Genes, Homeobox , Genes, Plant , Plant Leaves/anatomy & histology , Promoter Regions, Genetic , Alleles , Amino Acid Sequence , Brassica napus/anatomy & histology , CRISPR-Cas Systems , Chromosome Mapping , Genetic Linkage , Plant Proteins/genetics , Plants, Genetically Modified/genetics , Transcription Factors/genetics
17.
Plant Biotechnol J ; 16(7): 1336-1348, 2018 07.
Article in English | MEDLINE | ID: mdl-29265559

ABSTRACT

Genome-wide association studies (GWASs) combining high-throughput genome resequencing and phenotyping can accelerate the dissection of genetic architecture and identification of genes for plant complex traits. In this study, we developed a rapeseed genomic variation map consisting of 4 542 011 SNPs and 628 666 INDELs. GWAS was performed for three seed-quality traits, including erucic acid content (EAC), glucosinolate content (GSC) and seed oil content (SOC) using 3.82 million polymorphisms in an association panel. Six, 49 and 17 loci were detected to be associated with EAC, GSC and SOC in multiple environments, respectively. The mean total contribution of these loci in each environment was 94.1% for EAC and 87.9% for GSC, notably higher than that for SOC (40.1%). A high correlation was observed between phenotypic variance and number of favourable alleles for associated loci, which will contribute to breeding improvement by pyramiding these loci. Furthermore, candidate genes were detected underlying associated loci, based on functional polymorphisms in gene regions where sequence variation was found to correlate with phenotypic variation. Our approach was validated by detection of well-characterized FAE1 genes at each of two major loci for EAC on chromosomes A8 and C3, along with MYB28 genes at each of three major loci for GSC on chromosomes A9, C2 and C9. Four novel candidate genes were detected by correlation between GSC and SOC and observed sequence variation, respectively. This study provides insights into the genetic architecture of three seed-quality traits, which would be useful for genetic improvement of B. napus.


Subject(s)
Brassica napus/genetics , Plant Breeding , Quantitative Trait, Heritable , Seeds/genetics , Brassica napus/anatomy & histology , Chromosome Mapping , Erucic Acids/metabolism , Genetic Loci/genetics , Genetic Variation/genetics , Genome-Wide Association Study , Glucosinolates/metabolism , High-Throughput Nucleotide Sequencing , Plant Breeding/methods , Polymorphism, Single Nucleotide/genetics , Rapeseed Oil/metabolism , Seeds/anatomy & histology , Tetraploidy
18.
BMC Plant Biol ; 17(1): 240, 2017 Dec 11.
Article in English | MEDLINE | ID: mdl-29228924

ABSTRACT

BACKGROUND: Most studies of photosynthesis in chlorenchymas under potassium (K) deficiency focus exclusively on leaves; however, little information is available on the physiological role of K on reproductive structures, which play a critical role in plant carbon gain. Brassica napus L., a natural organ-succession species, was used to compare the morphological, anatomical and photo-physiological differences between leaves and siliques exposed to K-deficiency. RESULTS: Compared to leaves, siliques displayed considerably lower CO2 assimilation rates (A) under K-deficient (-K) or sufficient conditions (+K), limited by decreased stomatal conductance (g s), apparent quantum yield (α) and carboxylation efficiency (CE), as well as the ratio of the maximum rate of electron transport (J max) and the maximum rate of ribulose 1,5-bisphosphate (RuBP) carboxylation (V cmax). The estimated J max, V cmax and α of siliques were considerably lower than the theoretical value calculated on the basis of a similar ratio between these parameters and chlorophyll concentration (i.e. J max/Chl, V cmax/Chl and α/Chl) to leaves, of which the gaps between estimated- and theoretical-J max was the largest. In addition, the average ratio of J max to V cmax was 16.1% lower than that of leaves, indicating that the weakened electron transport was insufficient to meet the requirements for carbon assimilation. Siliques contained larger but fewer stoma, tightly packed cross-section with larger cells and fewer intercellular air spaces, fewer and smaller chloroplasts and thin grana lamellae, which might be linked to the reduction in light capture and CO2 diffusion. K-deficiency significantly decreased leaf and silique A under the combination of down-regulated stomatal size and g s, chloroplast number, α, V cmax and J max, while the CO2 diffusion distance between chloroplast and cell wall (D chl-cw) was enhanced. Siliques were more sensitive than leaves to K-starvation, exhibiting smaller reductions in tissue K and parameters such as g s, V cmax, J max and D chl-cw. CONCLUSION: Siliques had substantially smaller A than leaves, which was attributed to less efficient functioning of the photosynthetic apparatus, especially the integrated limitations of biochemical processes (J max and V cmax) and α; however, siliques were slightly less sensitive to K deficiency.


Subject(s)
Brassica napus/anatomy & histology , Brassica napus/metabolism , Photosynthesis , Potassium/metabolism , Carbon/metabolism , Microscopy, Electron, Scanning , Microscopy, Electron, Transmission , Plant Leaves/anatomy & histology , Plant Leaves/metabolism , Seeds/anatomy & histology , Seeds/metabolism
19.
Environ Sci Pollut Res Int ; 24(25): 20705-20716, 2017 Sep.
Article in English | MEDLINE | ID: mdl-28714046

ABSTRACT

Clarifying the connection between metal exposure and anatomical changes represents an important challenge for a better understanding of plant phytoextraction potential. A hydroponic screening experiment was carried out to evaluate the effects of combined interactions of Cd and Zn on mineral uptake (Mg, K, Ca, Na) and on the physiological and anatomical characteristics of Brassica napus L cv. Cadeli, Viking, and Navajo. Plants were exposed to 5 µM Cd (CdCl2), 10 µM Zn (ZnSO4), or both Cd + Zn, for 14 days. Cadmium exposure led to a significant reduction in root growth, shoot biomass, and chlorophyll content. After Cd-only and Cd + Zn treatment, primary root tips became thicker and pericycle cells were enlarged compared to the control and Zn-only treatment. No differences between metals were observed under UV excitation, where all treatments showed more intensive autofluorescence connected with lignin/suberin accumulation compared to control conditions. The highest concentrations of Cd and Zn were found in the roots of all tested plants, and translocation factors did not exceed the threshold of 1.0. The root mineral composition was not affected by any treatment. In the shoots, the Mg concentration slightly increased after Cd-only and Cd + Zn treatments, whereas Zn-only treatment caused a sharp decrease in Ca content. Slight increases in K were seen after the addition of Zn. Significantly higher concentrations of Na were induced by Cd- or Zn-only treatment.


Subject(s)
Brassica napus/drug effects , Cadmium/toxicity , Soil Pollutants/toxicity , Zinc/toxicity , Biodegradation, Environmental , Brassica napus/anatomy & histology , Brassica napus/physiology , Hydroponics , Plant Roots/anatomy & histology , Plant Roots/drug effects , Plant Roots/physiology
20.
Plant Physiol Biochem ; 113: 110-121, 2017 Apr.
Article in English | MEDLINE | ID: mdl-28196349

ABSTRACT

The interaction between low sink demand and potassium (K) deficiency in leaf photosynthesis was not intensively investigated, therefore this interaction was investigated in winter oilseed rape (Brassica napus L.). Plants subjected to sufficient (+K) or insufficient (-K) K supply treatments were maintained or removed their flowers and pods; these conditions were defined as high sink demand (HS) or low sink demand (LS), respectively. The low sink demand induced a lower photosynthetic rate (Pn), especially in the -K treatment during the first week. A negative relationship between Pn and carbohydrate concentration was observed in the -K treatment but not in the +K treatment, suggesting that the decrease in Pn in the -K treatment was the result of sink feedback regulation under low sink demand. Longer sink removal duration increased carbohydrate concentration, but the enhanced assimilate did not influence Pn. On the contrary, low sink demand resulted in a high K concentration, slower chloroplast degradation rate and better PSII activity, inducing a higher Pn compared with HS. Consequently, low sink demand decreased leaf photosynthesis over the short term due to sink feedback regulation, and potassium deficiency enhanced the photosynthetic decrease through carbohydrate accumulation and a lower carbohydrate concentration threshold for initiating photosynthesis depression. A longer duration of limited sink demand and sufficient potassium supply resulted in a higher photosynthesis rate because of delayed chloroplast degradation. This finding indicates that the nutritional status plays a role in leaf photosynthesis variations due to sink-source manipulation.


Subject(s)
Brassica napus/metabolism , Photosynthesis/physiology , Plant Leaves/metabolism , Potassium Deficiency/metabolism , Brassica napus/anatomy & histology , Brassica napus/cytology , Carbohydrate Metabolism , Carbon Dioxide/metabolism , Chlorophyll/metabolism , Feedback, Physiological , Flowers/anatomy & histology , Flowers/cytology , Flowers/metabolism , Hydrogen-Ion Concentration , Plant Leaves/anatomy & histology , Plant Leaves/cytology , Potassium/metabolism
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