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1.
Rev. biol. trop ; Rev. biol. trop;66(3): 996-1008, jul.-sep. 2018. tab, graf
Article in Spanish | LILACS, SaludCR | ID: biblio-977361

ABSTRACT

Resumen Las interacciones interespecíficas entre especies de mesocarnívoros tropicales han sido poco estudiadas, a pesar de tener implicaciones importantes en la supervivencia, estructura, demografía, y distribución de estas especies. En este estudio se analizaron las interacciones espacio-temporales de tres mesocarnívoros simpátricos que se encuentran en el límite Noreste de su distribución geográfica en México, con el objetivo de determinar si estas especies coexisten o compiten. Con un periodo de muestreo de enero 2015 a diciembre 2016 y con un total de 26 estaciones de trampeo equipadas con dos trampas-cámara puestas frente a frente y ubicadas en caminos y veredas dentro de los diferentes tipos de vegetación que presenta la Reserva de la Biosfera El Cielo, se determinó el patrón de actividad y uso de hábitat de L. wiedii (margay), L. pardalis (ocelote) y P. yagouaroundi (yaguarundi). Las fotografías independientes de cada especie se agruparon en tres categorías temporales (día, noche y crepúsculo) y en seis categorías espaciales (tipo de vegetación) para el uso del hábitat; Bosque de Encino, Bosque de Pino Encino, Bosque de Encino Pino, Bosque Mesófilo de Montaña, Selva Baja Caducifolia y Selva Mediana. El solapamiento entre especies (o interacciones) temporales y espaciales se obtuvieron con el índice de Czekanowski y el índice de Pianka, respectivamente. Estos índices son simétricos y toman valores de cero a uno, donde los resultados cercanos a cero indican que no hay solapamiento entre especies y los valores cercanos o con valor de uno indican solapamiento. Se obtuvieron un total de 379 fotografías independientes, de las cuales 239 correspondieron al margay, 118 a ocelote y 22 para el yaguarundi. Se documentó que el margay y el ocelote fueron nocturnos, más del 80 % de sus registros se presentaron en esta categoría y fueron también los que mostraron un solapamiento temporal alto (0.85), en contraste, el yaguarundi fue una especie con actividad totalmente diurna, lo que muestra que probablemente coexiste con las otras dos especies. El yaguarundi utilizó tipos de hábitat similares al ocelote y al margay (con un solapamiento de 0.81 y 0.72, respectivamente), mientras que el solapamiento espacial entre el margay y el ocelote fue intermedio (0.53), debido a que utilizaron distintos tipos de hábitat en la mayoría de los casos. Los resultados indican que no hay competencia interespecífica entre las especies de mesocarnívoros tropicales de este estudio, esto probablemente se debe a las interacciones antagonistas que exhiben entre ellos ya sea en el eje temporal o espacial. Estas estrategias pueden favorecer positivamente a las poblaciones de estos mesocarnívoros, los cuales se caracterizan por tener un comportamiento territorial alto.


Abstract Interspecific interactions among tropical mesocarnivorous species and other mammalian trophic guilds have been poorly studied, despite they have important implications in the survival, structure, demography, and distribution of these species. In this study we analyzed spatio-temporal interactions of three sympatric mesocarnivores that are located in the Northeastern limit of their geographic distribution in Mexico, with the objective of analyzing if these species coexist or compete in the axis of the temporal and spatial niche. With a sampling period from January 2015 to December 2016 and 26 camera-trapping stations (with in a set of two camera traps opposite to each other) and located along roads and animal trails, we determined the activity pattern and habitat use of L. wiedii (margay), L. pardalis (ocelote) y P. yagouaroundi (yaguarundi). All independent photographs of each species were grouped into three temporal categories (day, night and twilight) and six habitat categories; Oak Forest, Oak-Pine Forest, Cloud Forest, Pine-Oak Forest, Tropical Deciduous Forest and Medium Forest. Temporal and spatial overlap between species (i.e. interactions) was obtained with the Czekanowski index and the Pianka index, respectively. These indices are symmetrical and take values from zero to one, where the results close to zero indicate that there is no overlap between species and values close to one indicate overlap. We obtained a total of 379 independent photographs, of which 239 corresponded to margay, 118 to ocelot and 22 to yaguarundi. Margay and ocelot were nocturnal, with 75 % of their records in this category showing a high temporal overlap (0.85); whereas yaguarundi was fully diurnal, suggesting it may be able to coexist with the other two species (margay and ocelot). Moreover, the yaguarundi used habitat similar to ocelot and margay (with high spatial overlap of 0.81 and 0.72, respectively), while the spatial overlap between the margay and ocelot was intermediate (0.53), since they used in most cases different habitat types. Our results suggest that there is no interspecific competition among these tropical mesocarnivorous species, probably due to antagonistic interactions among them on the temporal and spatial axis. These strategies may positively favor populations of mesocarnivores, which are characterized by having a high territorial behavior. Rev. Biol. Trop. 66(3): 996-1008. Epub 2018 September 01.


Subject(s)
Carnivora/classification , Felidae/growth & development , Panthera/growth & development , Animal Feed/analysis , Mexico
2.
Zootaxa ; 4057(1): 106-14, 2015 Dec 09.
Article in English | MEDLINE | ID: mdl-26701468

ABSTRACT

A total of 111 samples (43 faeces and 79 gastrointestinal tracts) of 14 wild carnivore species from 12 Argentine provinces were analyzed. Helminth eggs were identified in 73% of the faecal samples and adult worms were recovered from 81% of the gastrointestinal tracts. We found 19 helminth species. Among the most frequent findings were parasites of domestic carnivores, namely Toxocara canis, Toxocara cati, Toxascaris leonina, Ancylostoma caninum, Ancylostoma tubaeforme and Uncinaria stenocephala. In addition, new hosts are reported for 6 nematode species and 5 helminth species are recorded for the first time in Argentina: Aonchotheca putorii, Molineus brachiurus, Cyathospirura chevreuxi, Physaloptera praeputialis and Oncicola martini.


Subject(s)
Carnivora/parasitology , Feces/parasitology , Helminths/classification , Helminths/physiology , Animal Distribution , Animals , Argentina , Carnivora/classification , Female , Helminths/anatomy & histology , Helminths/growth & development , Host Specificity , Male
3.
Proc Biol Sci ; 282(1817): 20151952, 2015 Oct 22.
Article in English | MEDLINE | ID: mdl-26490792

ABSTRACT

Lineages arriving on islands may undergo explosive evolutionary radiations owing to the wealth of ecological opportunities. Although studies on insular taxa have improved our understanding of macroevolutionary phenomena, we know little about the macroevolutionary dynamics of continental exchanges. Here we study the evolution of eight Carnivora families that have migrated across the Northern Hemisphere to investigate if continental invasions also result in explosive diversification dynamics. We used a Bayesian approach to estimate speciation and extinction rates from a substantial dataset of fossil occurrences while accounting for the incompleteness of the fossil record. Our analyses revealed a strongly asymmetrical pattern in which North American lineages invading Eurasia underwent explosive radiations, whereas lineages invading North America maintained uniform diversification dynamics. These invasions into Eurasia were characterized by high rates of speciation and extinction. The radiation of the arriving lineages in Eurasia coincide with the decline of established lineages or phases of climate change, suggesting differences in the ecological settings between the continents may be responsible for the disparity in diversification dynamics. These results reveal long-term outcomes of biological invasions and show that the importance of explosive radiations in shaping diversity extends beyond insular systems and have significant impact at continental scales.


Subject(s)
Carnivora/classification , Animals , Bayes Theorem , Biological Evolution , Climate Change , Ecosystem , Extinction, Biological , Fossils , Genetic Speciation , Introduced Species
4.
An Acad Bras Cienc ; 86(4): 1641-55, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25590705

ABSTRACT

The Brazilian Quaternary terrestrial Carnivora are represented by the following families: Canidae, Felidae, Ursidae, Procyonidae Mephitidae and Mustelidae. Their recent evolutionary history in South America is associated with the uplift of the Panamanian Isthmus, and which enabled the Great American Biotic Interchange (GABI). Here we present new fossil records of Carnivora found in a cave in Aurora do Tocantins, Tocantins, northern Brazil. A stratigraphical controlled collection in the sedimentary deposit of the studied cave revealed a fossiliferous level where the following Carnivora taxa were present: Panthera onca, Leopardus sp., Galictis cuja, Procyon cancrivorus, Nasua nasua and Arctotherium wingei. Dating by Electron Spinning Resonance indicates that this assemblage was deposited during the Last Glacial Maximum (LGM), at least, 22.000 YBP. The weasel, G. cuja, is currently reported much further south than the record presented here. This may suggest that the environment around the cave was relatively drier during the LGM, with more open vegetation, and more moderate temperatures than the current Brazilian Cerrado.


Subject(s)
Carnivora/anatomy & histology , Carnivora/classification , Fossils , Paleodontology , Tooth/anatomy & histology , Animals , Brazil
5.
Proc Natl Acad Sci U S A ; 109(5): 1584-8, 2012 Jan 31.
Article in English | MEDLINE | ID: mdl-22307615

ABSTRACT

The medial Permian (~270-260 Ma: Guadalupian) was a time of important tetrapod faunal changes, in particular reflecting a turnover from pelycosaurian- to therapsid-grade synapsids. Until now, most knowledge on tetrapod distribution during the medial Permian has come from fossils found in the South African Karoo and the Russian Platform, whereas other areas of Pangaea are still poorly known. We present evidence for the presence of a terrestrial carnivorous vertebrate from the Middle Permian of South America based on a complete skull. Pampaphoneus biccai gen. et sp. nov. was a dinocephalian "mammal-like reptile" member of the Anteosauridae, an early therapsid predator clade known only from the Middle Permian of Russia, Kazakhstan, China, and South Africa. The genus is characterized, among other features, by postorbital bosses, short, bulbous postcanines, and strongly recurved canines. Phylogenetic analysis indicates that the Brazilian dinocephalian occupies a middle position within the Anteosauridae, reinforcing the model of a global distribution for therapsids as early as the Guadalupian. The close phylogenetic relationship of the Brazilian species to dinocephalians from South Africa and the Russian Platform suggests a closer faunistic relationship between South America and eastern Europe than previously thought, lending support to a Pangaea B-type continental reconstruction.


Subject(s)
Carnivora , Fossils , Animals , Brazil , Carnivora/classification , Phylogeny
6.
Mol Ecol Resour ; 12(1): 18-35, 2012 Jan.
Article in English | MEDLINE | ID: mdl-21883979

ABSTRACT

Although species assignment of scats is important to study carnivore biology, there is still no standardized assay for the identification of carnivores worldwide, which would allow large-scale routine assessments and reliable cross-comparison of results. Here, we evaluate the potential of two short mtDNA fragments [ATP6 (126 bp) and cytochrome oxidase I gene (COI) (187 bp)] to serve as standard markers for the Carnivora. Samples of 66 species were sequenced for one or both of these segments. Alignments were complemented with archival sequences and analysed with three approaches (tree-based, distance-based and character-based). Intraspecific genetic distances were generally lower than between-species distances, resulting in diagnosable clusters for 86% (ATP6) and 85% (COI) of the species. Notable exceptions were recently diverged species, most of which could still be identified using diagnostic characters and uniqueness of haplotypes or by reducing the geographic scope of the comparison. In silico analyses were also performed for a 110-bp cytochrome b (cytb) segment, whose identification success was lower (70%), possibly due to the smaller number of informative sites and/or the influence of misidentified sequences obtained from GenBank. Finally, we performed case studies with faecal samples, which supported the suitability of our two focal markers for poor-quality DNA and allowed an assessment of prey DNA co-amplification. No evidence of prey DNA contamination was found for ATP6, while some cases were observed for COI and subsequently eliminated by the design of more specific primers. Overall, our results indicate that these segments hold good potential as standard markers for accurate species-level identification in the Carnivora.


Subject(s)
Carnivora/classification , Carnivora/genetics , Classification/methods , DNA Barcoding, Taxonomic/methods , DNA, Mitochondrial/genetics , Phylogeny , Animals , Cytochromes b/genetics , Electron Transport Complex IV/genetics , Feces/chemistry , Molecular Sequence Data
7.
Mol Phylogenet Evol ; 56(1): 49-63, 2010 Jul.
Article in English | MEDLINE | ID: mdl-20138220

ABSTRACT

The mammalian order Carnivora has attracted the attention of scientists of various disciplines for decades, leading to intense interest in defining its supra-familial relationships. In the last few years, major changes to the topological structure of the carnivoran tree have been proposed and supported by various molecular data sets, radically changing the traditional view of family composition in this order. Although a sequence of molecular studies have established a growing consensus with respect to most inter-familial relationships, no analysis so far has included all carnivoran lineages (both feliform and caniform) in an integrated data set, so as to determine comparative patterns of diversification. Moreover, no study conducted thus far has estimated divergence dates among all carnivoran families, which is an important requirement in the attempt to understand the patterns and tempo of diversification in this group. In this study, we have investigated the phylogenetic relationships among carnivoran families, and performed molecular dating analyses of the inferred nodes. We assembled a molecular supermatrix containing 14 genes (7765 bp), most of which have not been previously used in supra-familial carnivoran phylogenetics, for 50 different genera representing all carnivoran families. Analysis of this data set led to consistent and robust resolution of all supra-familial nodes in the carnivoran tree, and allowed the construction of a molecular timescale for the evolution of this mammalian order.


Subject(s)
Carnivora/genetics , Evolution, Molecular , Phylogeny , Animals , Carnivora/classification , Cell Nucleus/genetics , Fossils , Likelihood Functions , Models, Genetic , Sequence Analysis, DNA
8.
Mol Phylogenet Evol ; 54(3): 726-45, 2010 Mar.
Article in English | MEDLINE | ID: mdl-19900567

ABSTRACT

Phylogenies underpin comparative biology as high-utility tools to test evolutionary and biogeographic hypotheses, inform on conservation strategies, and reveal the age and evolutionary histories of traits and lineages. As tools, most powerful are those phylogenies that contain all, or nearly all, of the taxa of a given group. Despite their obvious utility, such phylogenies, other than summary 'supertrees', are currently lacking for most mammalian orders, including the order Carnivora. Carnivora consists of about 270 extant species including most of the world's large terrestrial predators (e.g., the big cats, wolves, bears), as well as many of man's favorite wild (panda, cheetah, tiger) and domesticated animals (dog, cat). Distributed globally, carnivores are highly diverse ecologically, having occupied all major habitat types on the planet and being diverse in traits such as sociality, communication, body/brain size, and foraging ecology. Thus, numerous studies continue to address comparative questions within the order, highlighting the need for a detailed species-level phylogeny. Here we present a phylogeny of Carnivora that increases taxon sampling density from 28% in the most detailed primary-data study to date, to 82% containing 243 taxa (222 extant species, 17 subspecies). In addition to extant species, we sampled four extinct species: American cheetah, saber-toothed cat, cave bear and the giant short-faced bear. Bayesian analysis of cytochrome b sequences data-mined from GenBank results in a phylogenetic hypothesis that is largely congruent with prior studies based on fewer taxa but more characters. We find support for the monophyly of Carnivora, its major division into Caniformia and Feliformia, and for all but one family within the order. The only exception is the placement of the kinkajou outside Procyonidae, however, prior studies have already cast doubt on its family placement. In contrast, at the subfamily and genus level, our results indicate numerous problems with current classification. Our results also propose new, controversial hypotheses, such as the possible placement of the red panda (Ailuridae) sister to canids (Canidae). Our results confirm previous findings suggesting that the dog was domesticated from the Eurasian wolf (Canis lupus lupus) and are congruent with the Near East domestication of the cat. In sum, this study presents the most detailed species-level phylogeny of Carnivora to date and a much needed tool for comparative studies of carnivoran species. To demonstrate one such use, we perform a phylogenetic analysis of evolutionary distinctiveness (EDGE), which can be used to help establish conservation priorities. According with those criteria, and under one of the many possible sets of parameters, the highest priority Carnivora species for conservation of evolutionary diversity include: monk seals, giant and red panda, giant otter, otter civet, Owston's palm civet, sea otter, Liberian mongoose, spectacled bear, walrus, binturong, and the fossa.


Subject(s)
Carnivora/classification , Evolution, Molecular , Phylogeny , Animals , Bayes Theorem , Carnivora/genetics , Conservation of Natural Resources , Cytochromes b/genetics , DNA, Mitochondrial/genetics , Fossils , Sequence Analysis, DNA , Species Specificity
9.
Biol Lett ; 5(1): 35-8, 2009 Feb 23.
Article in English | MEDLINE | ID: mdl-18842564

ABSTRACT

Large carnivores are important ecosystem components but are extinction prone due to small populations, slow growth rates and large area requirements. Consequently, there has been a surge of carnivore conservation efforts. Such efforts typically target local populations, with limited attention to the effects on the ecosystem function of predator guilds. Also, there is no framework for prioritizing these efforts globally. We compared taxonomic and functional diversity of continental carnivore guilds, compared them with the corresponding guilds during the Late Pleistocene and synthesized our results into suggestions for global prioritizations for carnivore conservation. Recent extinctions have caused taxonomically and functionally depleted carnivore guilds in Europe and North and South America, contrasting with guilds in Africa and Asia, which have retained a larger proportion of their carnivores. However, Asia is at higher risk of suffering further extinctions than other continents. We suggest three priorities of contrasting urgency for global carnivore conservation: (i) to promote recovery of the threatened Asian species, (ii) to prevent species in the depleted guilds in Europe and North and South America from becoming threatened, and (iii) to reconstruct functionally intact sympatric guilds of large carnivores at ecologically effective population sizes.


Subject(s)
Biodiversity , Carnivora , Conservation of Natural Resources , Africa , Animals , Asia , Carnivora/classification , Europe , Extinction, Biological , North America , Population Density , South America
10.
Rev. biol. trop ; Rev. biol. trop;55(1): 315-320, Mar. 2007. tab
Article in English | LILACS | ID: lil-501471

ABSTRACT

Capturing small carnivores is often necessary for obtaining key ecological data. We compared the efficiency of box and leg-hold traps, using live and dead bait, to capture six carnivore species (Herpailurus yagouaroundi (E. Geoffroyi, 1803), Leopardus tigrinus (Schreber, 1775), Nasua nasua (Linnaeus, 1766), Cerdocyon thous (Linnaeus, 1766), Eira barbara (Linnaeus, 1758), and Galictis cuja (Molina, 1782)). The use of leg-hold traps significantly increased the capture rate of carnivores (5.77%) and non-target species (non-carnivores, 11.54%). Dead bait significantly attracted more non-carnivores than carnivores and live bait was more efficient for capturing carnivores (2.56%) than non-carnivores (0.77%). Both box and leg-hold traps caused some minor injuries (swelling and claw loss). We provide recommendations for the ethical use of these trap and bait types.


Subject(s)
Animals , Carnivora/classification , Equipment Design , Brazil , Conservation of Natural Resources/methods , Efficiency
11.
Rev Biol Trop ; 55(1): 315-20, 2007 Mar.
Article in English | MEDLINE | ID: mdl-18457140

ABSTRACT

Capturing small carnivores is often necessary for obtaining key ecological data. We compared the efficiency of box and leg-hold traps, using live and dead bait, to capture six carnivore species (Herpailurus yagouaroundi (E. Geoffroyi, 1803), Leopardus tigrinus (Schreber, 1775), Nasua nasua (Linnaeus, 1766), Cerdocyon thous (Linnaeus, 1766), Eira barbara (Linnaeus, 1758), and Galictis cuja (Molina, 1782)). The use of leg-hold traps significantly increased the capture rate of carnivores (5.77%) and non-target species (non-carnivores, 11.54%). Dead bait significantly attracted more non-carnivores than carnivores and live bait was more efficient for capturing carnivores (2.56%) than non-carnivores (0.77%). Both box and leg-hold traps caused some minor injuries (swelling and claw loss). We provide recommendations for the ethical use of these trap and bait types.


Subject(s)
Carnivora/classification , Equipment Design , Animals , Brazil , Conservation of Natural Resources/methods , Efficiency
12.
Braz J Biol ; 66(3): 873-81, 2006 Aug.
Article in English | MEDLINE | ID: mdl-17119835

ABSTRACT

Although in most recent broad-scale analyses, diversity is measured by counting the number of species in a given area or spatial unity (species richness), a 'top-down' approach has been used sometimes, counting higher-taxon (genera, family) instead of species with some advantages. However, this higher-taxon approach is quite empirical and the cut-off level is usually arbitrarily defined. In this work, we show that the higher-taxon approach could be theoretically linked with models of phenotypic diversification by means of phylogenetic autocorrelation analysis in such a way that the taxonomic (or phylogenetic) rank to be used could not be necessarily arbitrary. This rank expresses past time in which taxa became independent for a given phenotypic trait or for the evolution of average phenotypes across different traits. We illustrated the approach by evaluating phylogenetic patches for 23 morphological, ecological and behavioural characters in New World terrestrial Carnivora. The higher-taxon counts at 18.8 mya (S(L)) defined by phylogenetic correlograms are highly correlated with species richness (r = 0.899; P < 0.001 with ca. 13 degrees of freedom by taking spatial autocorrelation into account). However, S(L) in North America is usually larger than in South America. Thus, although there are more species in South and Central America, the fast recent diversification that occurred in this region generated species that are "redundant" in relation to lineages that were present at 18.8 my. BP. Therefore, the number of lineages can be comparatively used as a measure of evolutionary diversity under a given model of phenotypic divergence among lower taxonomic units.


Subject(s)
Biodiversity , Biological Evolution , Carnivora/genetics , Phenotype , Phylogeny , Animals , Carnivora/classification , Models, Genetic
13.
Braz. j. biol ; Braz. j. biol;66(3): 873-881, Aug. 2006. graf, mapas, tab
Article in English, Portuguese | LILACS | ID: lil-435628

ABSTRACT

Although in most recent broad-scale analyses, diversity is measured by counting the number of species in a given area or spatial unity (species richness), a `top-down' approach has been used sometimes, counting higher-taxon (genera, family) instead of species with some advantages. However, this higher-taxon approach is quite empirical and the cut-off level is usually arbitrarily defined. In this work, we show that the higher-taxon approach could be theoretically linked with models of phenotypic diversification by means of phylogenetic autocorrelation analysis in such a way that the taxonomic (or phylogenetic) rank to be used could not be necessarily arbitrary. This rank expresses past time in which taxa became independent for a given phenotypic trait or for the evolution of average phenotypes across different traits. We illustrated the approach by evaluating phylogenetic patches for 23 morphological, ecological and behavioural characters in New World terrestrial Carnivora. The higher-taxon counts at 18.8 mya (S L) defined by phylogenetic correlograms are highly correlated with species richness (r = 0.899; P < 0.001 with ca. 13 degrees of freedom by taking spatial autocorrelation into account). However, S L in North America is usually larger than in South America. Thus, although there are more species in South and Central America, the fast recent diversification that occurred in this region generated species that are "redundant" in relation to lineages that were present at 18.8 my. BP. Therefore, the number of lineages can be comparatively used as a measure of evolutionary diversity under a given model of phenotypic divergence among lower taxonomic units.


Embora as análises da biodiversidade em escalas geográficas amplas sejam normalmente realizadas em nível das espécies, alguns trabalhos recentes têm utilizado contagens de categorias taxonômicas mais elevadas, com algumas vantagens. Entretanto, essa abordagem é aplicada de forma empírica e o nível hierárquico escolhido (gênero, famílias, etc.) é geralmente arbitrário. Este trabalho, mostra que essa abordagem pode ser ligada teoricamente aos modelos de evolução fenotípica pelos métodos de autocorrelação filogenética. Esse nível da hierarquia deve expressar o tempo passado no qual os taxa analisados se tornam independentes estatisticamente, para o fenótipo. O método proposto foi aplicado para analisar a evolução fenotípica de 23 caracteres morfológicos, ecológicos e comportamentais em espécies de Carnivora do Novo Mundo. A contagem de linhagens há 18,8 milhões de anos atrás, definida pelos correlogramas filogenéticos, foi altamente correlacionada com a riqueza de espécies (r = 0,899; P < 0,001 com 13 graus de liberdade, levando em consideração a autocorrelação espacial). O número de linhagens foi maior na América do Norte, de modo que embora haja mais espécies na região tropical, estas representam eventos recentes de diversificação, com espécies redundantes em relação às linhagens que existiam há 18,8 milhões de anos atrás. O número de linhagens definido por autocorrelação pode ser utilizado como uma medida de diversidade evolutiva sob um dado modelo de divergência fenotípica.


Subject(s)
Animals , Biodiversity , Biological Evolution , Carnivora/genetics , Phenotype , Phylogeny , Carnivora/classification , Models, Genetic
14.
Evolution ; 55(6): 1104-9, 2001 Jun.
Article in English | MEDLINE | ID: mdl-11475046

ABSTRACT

I show how phylogenetic correlograms track distinct microevolutionary processes and can be used as empirical descriptors of the relationship between interspecific covariance (V(B)) and time since divergence (t). Data were simulated under models of gradual and speciational change, using increasing levels of stabilizing selection in a stochastic Ornstein-Uhlenbeck (O-U) process, on a phylogeny of 42 species. For each simulated dataset, correlograms were constructed using Moran's I coefficients estimated at five time slices, established at constant intervals. The correlograms generated under different evolutionary models differ significantly according to F-values derived from analysis of variance comparing Moran's I at each time slice and based on Wilks' lambda from multivariate analysis of variance comparing their overall profiles in a two-way design. Under Brownian motion or with small restraining forces in the O-U process, correlograms were better fit by a linear model. However, increasing restraining forces in the O-U process cause a lack of linear fit, and correlograms are better described by exponential models. These patterns are better fit for gradual than for speciational modes of change. Correlograms can be used as a diagnostic method and to describe the V(B)/t relationship before using methods to analyze correlated evolution that assume (or perform statistically better when) this relationship is linear.


Subject(s)
Models, Biological , Phylogeny , Analysis of Variance , Animals , Carnivora/classification , Genetic Variation , Models, Theoretical , Species Specificity
15.
Mol Ecol ; 8(12 Suppl 1): S79-94, 1999 Dec.
Article in English | MEDLINE | ID: mdl-10703553

ABSTRACT

Tissue specimens from four species of Neotropical small cats (Oncifelis geoffroyi, N = 38; O. guigna, N = 6; Leopardus tigrinus, N = 32; Lynchailurus colocolo, N = 22) collected from throughout their distribution were examined for patterns of DNA sequence variation using three mitochondrial genes, 16S rRNA, ATP8, and NADH-5. Patterns between and among O. guigna and O. geoffroyi individuals were assessed further from size variation at 20 microsatellite loci. Phylogenetic analyses using mitochondrial DNA sequences revealed monophyletic clustering of the four species, plus evidence of natural hybridization between L. tigrinus and L. colocolo in areas of range overlap and discrete population subdivisions reflecting geographical isolation. Several commonly accepted subspecies partitions were affirmed for L. colocolo, but not for O. geoffroyi. The lack of geographical substructure in O. geoffroyi was recapitulated with the microsatellite data, as was the monophyletic clustering of O. guigna and O. geoffroyi individuals. L. tigrinus forms two phylogeographic clusters which correspond to L.t. oncilla (from Costa Rica) and L.t. guttula (from Brazil) and which have mitochondrial DNA (mtDNA) genetic distance estimates comparable to interspecific values between other ocelot lineage species. Using feline-specific calibration rates for mitochondrial DNA mutation rates, we estimated that extant lineages of O. guigna diverged 0.4 million years ago (Ma), compared with 1.7 Ma for L. colocolo, 2.0 Ma for O. geoffroyi, and 3.7 Ma for L. tigrinus.


Subject(s)
Carnivora/genetics , Phylogeny , Alleles , Animals , Carnivora/classification , Conservation of Natural Resources , DNA, Mitochondrial/genetics , Ecosystem , Evolution, Molecular , Female , Genetic Variation , Genetics, Population , Male , Polymerase Chain Reaction , South America , Species Specificity , Time Factors
16.
Syst Biol ; 46(4): 622-53, 1997 Dec.
Article in English | MEDLINE | ID: mdl-11975336

ABSTRACT

Despite numerous systematic studies, the relationships among many species within the dog family, Canidae, remain unresolved. Two problems of broad evolutionary significance are the origins of the taxonomically rich canidae fauna of South America and the development in three species of the trenchant heel, a unique meat-cutting blade on the lower first molar. The first problem is of interest because the fossil record provides little evidence for the origins of divergent South American species such as the maned wolf and the bush dog. The second issue is problematic because the trenchant heel, although complex in form, may have evolved independently to assist in the processing of meat. We attempted to resolve these two issues and five other specific taxonomic controversies by phylogenetic analysis of 2,001 base pairs of mitochondrial DNA (mtDNA) sequence data from 23 canidae species. The mtDNA tree topology, coupled with data from the fossil record, and estimates of rates of DNA sequence divergence suggest at least three and possibly four North American invasions of South America. This result implies that an important chapter in the evolution of modern canids remains to be discovered in the fossil record and that the South American canidae endemism is as much the result of extinction outside of South America as it is due to speciation within South America. The origin of the trenchant heel is not well resolved by our data, although the maximum parsimony tree is weakly consistent with a single origin followed by multiple losses of the character in several extant species. A combined analysis of the mtDNA data and published morphological data provides unexpected support for a monophyletic South American canidae clade. However, the homogeneity partition tests indicate significant heterogeneity between the two data sets.


Subject(s)
Carnivora/classification , Carnivora/genetics , Phylogeny , Animals , Base Sequence , Carnivora/anatomy & histology , Cytochrome b Group/genetics , DNA, Mitochondrial/genetics , Evolution, Molecular , Molecular Sequence Data , North America , Sequence Homology, Nucleic Acid , South America , Tooth/anatomy & histology
17.
Rev Bras Biol ; 49(2): 361-7, 1989 May.
Article in English | MEDLINE | ID: mdl-2608943

ABSTRACT

The taxonomic status of Caatinga mammals, considered by Mares et al. (1981), is updated herein and a checklist of extant mammals is included. A brief survey of recent contributions to the scientific literature on Caatinga mammals is also provided.


Subject(s)
Mammals/classification , Animals , Brazil , Carnivora/classification , Chiroptera/classification , Marsupialia/classification , Primates/classification , Rodentia/classification , Xenarthra/classification
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