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1.
Nature ; 615(7952): 468-471, 2023 03.
Article in English | MEDLINE | ID: mdl-36890226

ABSTRACT

The animal phyla and their associated body plans originate from a singular burst of evolution occurring during the Cambrian period, over 500 million years ago1. The phylum Bryozoa, the colonial 'moss animals', have been the exception: convincing skeletons of this biomineralizing clade have been absent from Cambrian strata, in part because potential bryozoan fossils are difficult to distinguish from the modular skeletons of other animal and algal groups2,3. At present, the strongest candidate4 is the phosphatic microfossil Protomelission5. Here we describe exceptionally preserved non-mineralized anatomy in Protomelission-like macrofossils from the Xiaoshiba Lagerstätte6. Taken alongside the detailed skeletal construction and the potential taphonomic origin of 'zooid apertures', we consider that Protomelission is better interpreted as the earliest dasycladalean green alga-emphasizing the ecological role of benthic photosynthesizers in early Cambrian communities. Under this interpretation, Protomelission cannot inform the origins of the bryozoan body plan; despite a growing number of promising candidates7-9, there remain no unequivocal bryozoans of Cambrian age.


Subject(s)
Bryozoa , Chlorophyta , Fossils , Phylogeny , Animals , Bryozoa/anatomy & histology , Bryozoa/classification , Phosphates/metabolism , Chlorophyta/anatomy & histology , Chlorophyta/classification , Photosynthesis , China
2.
Nat Commun ; 13(1): 146, 2022 01 10.
Article in English | MEDLINE | ID: mdl-35013306

ABSTRACT

The acquisition of photosynthesis is a fundamental step in the evolution of eukaryotes. However, few phototrophic organisms are unambiguously recognized in the Precambrian record. The in situ detection of metabolic byproducts in individual microfossils is the key for the direct identification of their metabolisms. Here, we report a new integrative methodology using synchrotron-based X-ray fluorescence and absorption. We evidence bound nickel-geoporphyrins moieties in low-grade metamorphic rocks, preserved in situ within cells of a ~1 Gyr-old multicellular eukaryote, Arctacellularia tetragonala. We identify these moieties as chlorophyll derivatives, indicating that A. tetragonala was a phototrophic eukaryote, one of the first unambiguous algae. This new approach, applicable to overmature rocks, creates a strong new proxy to understand the evolution of phototrophy and diversification of early ecosystems.


Subject(s)
Chlorophyll/chemistry , Chlorophyta/ultrastructure , Coordination Complexes/chemistry , Fossils , Photosynthesis/physiology , Biological Evolution , Chlorophyll/history , Chlorophyta/anatomy & histology , Chlorophyta/classification , Chlorophyta/physiology , Democratic Republic of the Congo , Ecosystem , Eukaryotic Cells , Geologic Sediments/analysis , History, Ancient , Microscopy, Electron, Transmission , Nickel/chemistry , Phylogeny , Plant Cells/physiology , Plant Cells/ultrastructure , Tetrapyrroles/chemistry , X-Ray Absorption Spectroscopy
3.
Mol Phylogenet Evol ; 149: 106821, 2020 08.
Article in English | MEDLINE | ID: mdl-32294545

ABSTRACT

Lichens provide valuable systems for studying symbiotic interactions. In lichens, these interactions are frequently described in terms of availability, selectivity and specificity of the mycobionts and photobionts towards one another. The lichen-forming, green algal genus Trebouxia Puymaly is among the most widespread photobiont, associating with a broad range of lichen-forming fungi. To date, 29 species have been described, but studies consistently indicate that the vast majority of species-level lineages still lack formal description, and new, previously unrecognized lineages are frequently reported. To reappraise the diversity and the evolutionary relationships of species-level lineages in Trebouxia, we assembled DNA sequence data from over 1600 specimens, compiled from a range of sequences from previously published studies, axenic algal cultures, and lichens collected from poorly sampled regions. From these samples, we selected representatives of the currently known genetic diversity in the lichenized Trebouxia and inferred a phylogeny from multi-locus sequence data (ITS, rbcL, cox2). We demonstrate that the current formally described species woefully underrepresent overall species-level diversity in this important lichen-forming algal genus. We anticipate that an integrative taxonomic approach, incorporating morphological and physiological data from axenic cultures with genetic data, will be required to establish a robust, comprehensive taxonomy for Trebouxia. The data presented here provide an important impetus and reference dataset for more reliably characterizing diversity in lichenized algae and in using lichens to investigate the evolution of symbioses and holobionts.


Subject(s)
Biodiversity , Chlorophyta/classification , Lichens/classification , Phylogeny , Chlorophyta/anatomy & histology , Chlorophyta/genetics , Chlorophyta/ultrastructure , Genetic Loci , Lichens/genetics , Lichens/ultrastructure , Species Specificity
4.
Microsc Res Tech ; 82(5): 580-585, 2019 May.
Article in English | MEDLINE | ID: mdl-30614133

ABSTRACT

INTRODUCTION: For sample collection, four sites were selected, sites where fresh water were present, that is, Ravi syphon, BRB Lahore, Shahdara, and Head Baloki. The latitude and altitude of the locations were recorded at the time of collection. RESULTS: A total of 21 species of algae belonging to eight genera and four families were examined in the current studies. The collected samples were mainly filamentous and they were primarily green in color as the photosynthetic pigment found to be dominated was Chlorophyll. It was observed that all the genera varied mainly on the basis of cell shape, size, number of pyramids and on the arrangement of cells. The site mainly selected was those where fresh water was mainly found and at the time of collection latitude and altitude was also recorded. CONCLUSIONS: The classical microscopic technique (Light Microscopy) and Modern microscopic technique (Staining Electron Microscopy) of some samples were done that, played a lively part in the correct identification of species as a slight difference was found among species that were only evident when the Modern microscopic technique was done.


Subject(s)
Chlorophyta/anatomy & histology , Chlorophyta/cytology , Microscopy/methods , Chlorophyta/chemistry , Chlorophyta/classification , Pigments, Biological/analysis , Water Microbiology
5.
Sci Adv ; 4(11): eaau4548, 2018 11.
Article in English | MEDLINE | ID: mdl-30406204

ABSTRACT

Accurate knowledge of elemental distributions within biological organisms is critical for understanding their cellular roles. The ability to couple this knowledge with overall cellular architecture in three dimensions (3D) deepens our understanding of cellular chemistry. Using a whole, frozen-hydrated Chlamydomonas reinhardtii cell as an example, we report the development of 3D correlative microscopy through a combination of simultaneous cryogenic x-ray ptychography and x-ray fluorescence microscopy. By taking advantage of a recently developed tomographic reconstruction algorithm, termed GENeralized Fourier Iterative REconstruction (GENFIRE), we produce high-quality 3D maps of the unlabeled alga's cellular ultrastructure and elemental distributions within the cell. We demonstrate GENFIRE's ability to outperform conventional tomography algorithms and to further improve the reconstruction quality by refining the experimentally intended tomographic angles. As this method continues to advance with brighter coherent light sources and more efficient data handling, we expect correlative 3D x-ray fluorescence and ptychographic tomography to be a powerful tool for probing a wide range of frozen-hydrated biological specimens, ranging from small prokaryotes such as bacteria, algae, and parasites to large eukaryotes such as mammalian cells, with applications that include understanding cellular responses to environmental stimuli and cell-to-cell interactions.


Subject(s)
Chlorophyta/physiology , Imaging, Three-Dimensional/methods , Microscopy, Fluorescence/methods , Tomography, X-Ray Computed/methods , Chlorophyta/anatomy & histology , Chlorophyta/ultrastructure , Freezing , Image Processing, Computer-Assisted
6.
PLoS One ; 13(10): e0206492, 2018.
Article in English | MEDLINE | ID: mdl-30359424

ABSTRACT

Green algae of the genus Halimeda have modular siphonous thalli composed of multiple repeated segments. Morphological variation among the segments has been related to various environmental factors, which often jointly affect their size and shape. The segments are bilaterally symmetric, which means that their shape variation can be decomposed into the symmetric and asymmetric components. Asymmetric variation might reflect both environmental heterogeneity and developmental instability of morphogenetic processes during the development of segments. In the present study, we examined if segment shape in H. tuna is related to their size and if an allometric relationship can also be found with respect to their asymmetry. Relative contributions of directional and fluctuating asymmetry to the segment shape variation within individual plants were investigated at two close localities in the northern Adriatic Sea. A series of equidistant semilandmarks were set along the outline of the segments, and analyzed by geometric morphometrics using two parallel methods to optimize their final position. Symmetric variation was strongly constrained by allometry, which also explained differences between populations. Smaller segments were significantly more asymmetric, but the difference in asymmetry between populations could not be explained solely by this allometric relationship. These differences between populations might have been caused by variation in local environmental factors. We conclude that members of the genus Halimeda represent an intriguing model system for studies of morphometric symmetry and asymmetry of sessile marine organisms, including effects of allometric relationships and infraspecific variation in relation to environmental factors of the benthic coastal habitats.


Subject(s)
Chlorophyta/anatomy & histology , Chlorophyta/physiology , Animals , Biological Evolution , Ecosystem , Models, Biological , Morphogenesis/physiology
7.
J Phycol ; 54(5): 616-629, 2018 10.
Article in English | MEDLINE | ID: mdl-30076711

ABSTRACT

Lake Baikal, the oldest lake in the world, is home to spectacular biodiversity and extraordinary levels of endemism. While many of the animal species flocks from Lake Baikal are famous examples of evolutionary radiations, the lake also includes a wide diversity of endemic algae that are not well investigated with regards to molecular-biological taxonomy and phylogeny. The endemic taxa of the green algal order Cladophorales show a range of divergent morphologies that led to their classification in four genera in two families. We sequenced partial large- and small-subunit rDNA as well as the internal transcribed spacer region of 14 of the 16 described endemic taxa to clarify their phylogenetic relationships. One endemic morphospecies, Cladophora kusnetzowii, was shown to be conspecific with the widespread Aegagropila linnaei. All other endemic morphospecies formed a monophyletic group nested within the genus Rhizoclonium (Cladophoraceae), a very surprising result, in stark contrast to their morphological affinities. The Baikal clade represents a species flock of closely related taxa with very low genetic differentiation. Some of the morphospecies were congruent with lineages recovered in the phylogenies, but due to the low phylogenetic signal in the rDNA sequences the relationships within the Baikal clade were not all well resolved. The Baikal clade appears to represent a recent radiation, based on the low molecular divergence within the group, and it is hypothesized that the large morphological variation results from diversification in sympatry from a common ancestor in Lake Baikal.


Subject(s)
Biodiversity , Biological Evolution , Chlorophyta/classification , Phylogeny , Chlorophyta/anatomy & histology , Chlorophyta/cytology , Chlorophyta/genetics , DNA, Algal/analysis , DNA, Ribosomal/analysis , Evolution, Molecular , Lakes , Sequence Analysis, DNA , Siberia
8.
Mol Phylogenet Evol ; 127: 758-769, 2018 10.
Article in English | MEDLINE | ID: mdl-29913312

ABSTRACT

The Udoteaceae family (Bryopsidales, Chlorophyta) is known to be highly diverse morphologically in the Caribbean region, but only few studies have studied its genetic diversity. Using an integrative taxonomic approach, this study aimed at (1) exploring the Udoteaceae species diversity using a combination of five DNA-based species delimitation methods and morpho-anatomical data for confirmation; (2) estimating the discriminatory power of traditional diagnostic characters using a morphology-based clustering method and statistical analyses focused on the genus Udotea; and (3) reconstructing the phylogeny of the family based on a multilocus analysis (tufA, rbcL, 18S rDNA). Our results revealed strong congruence between species hypotheses across delimitation methods and markers. Morpho-anatomical characters proved essential to validate these hypotheses, to assign species names and to unveil new species. Morphological analyses led to relevant results for accurately discriminating Udotea morphospecies. Siphon features and cortication were key characters to define supra-specific groups and to revise the taxonomy of the genus Udotea. Phylogenetic analyses confirmed the polyphyly of Udotea, Rhipocephalus and Penicillus, which led us to propose a revised definition of Udotea sensu stricto based on both genetic and morphological data. Finally, our study emphasizes the importance of combining genetic and morphological data for the taxonomic revision of the Udoteaceae, but stresses the need of including more taxa from other geographical regions to better resolve taxonomic issues.


Subject(s)
Chlorophyta/anatomy & histology , Chlorophyta/genetics , Genetic Variation , Base Sequence , Caribbean Region , DNA, Ribosomal , Likelihood Functions , Multivariate Analysis , Phylogeny , Principal Component Analysis , Species Specificity
9.
Planta ; 247(6): 1293-1306, 2018 Jun.
Article in English | MEDLINE | ID: mdl-29460179

ABSTRACT

MAIN CONCLUSION: The macroalga Bryopsis corticulans relies on a sustained protective NPQ and a peculiar body architecture to efficiently adapt to the extreme light changes of intertidal shores. During low tides, intertidal algae experience prolonged high light stress. Efficient dissipation of excess light energy, measured as non-photochemical quenching (NPQ) of chlorophyll fluorescence, is therefore required to avoid photodamage. Light-harvesting regulation was studied in the intertidal macroalga Bryopsis corticulans, during high light and air exposure. Photosynthetic capacity and NPQ kinetics were assessed in different filament layers of the algal tufts and in intact chloroplasts to unravel the nature of NPQ in this siphonous green alga. We found that the morphology and pigment composition of the B. corticulans body provides functional segregation between surface sunlit filaments (protective state) and those that are underneath and undergo severe light attenuation (light-harvesting state). In the surface filaments, very high and sustained NPQ gradually formed. NPQ induction was triggered by the formation of transthylakoid proton gradient and independent of the xanthophyll cycle. PsbS and LHCSR proteins seem not to be active in the NPQ mechanism activated by this alga. Our results show that B. corticulans endures excess light energy pressure through a sustained protective NPQ, not related to photodamage, as revealed by the unusually quick restoration of photosystem II (PSII) function in the dark. This might suggest either the occurrence of transient PSII photoinactivation or a fast rate of PSII repair cycle.


Subject(s)
Chlorophyta/anatomy & histology , Chlorophyta/physiology , Oxygen/metabolism , Photosystem II Protein Complex/metabolism , Chlorophyll/metabolism , Chlorophyta/cytology , Chloroplasts/physiology , Chloroplasts/radiation effects , Kinetics , Light , Light-Harvesting Protein Complexes/metabolism , Light-Harvesting Protein Complexes/radiation effects , Photosynthesis/radiation effects , Photosystem II Protein Complex/radiation effects , Seaweed , Stress, Physiological , Tidal Waves
10.
J Phycol ; 53(4): 869-879, 2017 08.
Article in English | MEDLINE | ID: mdl-28542872

ABSTRACT

Planctonema-like species consist of planktonic green algae and are found throughout the world. Their characteristic morphology, which includes short and slender filaments consisting of side-by-side or distant cylindrical cells enclosed in a fine and hyaline sheath, makes them easily distinguishable. To date, Planctonema lauterbornii was the only taxon accepted for this group. However, descriptions from different materials have revealed notable morphological differences, including the presence/absence of a pyrenoid, a mucilage sheath and an apical thickening of the cell wall. In this study, six strains of Planctonema-like species were identified and successfully cultured in the laboratory. We used a molecular approach to determine their taxonomic relationships and phylogenetic positions. The molecular analysis resolved them to at least three genera. The genus Planctonema was positioned in Trebouxiophyceae as an incertae sedis taxon that is closely related to Oocystaceae and was divided into two species. Planctonema gelatinosum was determined to be a new species with approximately twice the width and a thicker mucilage sheath, which differentiated it from the type species Planctonema lauterbornii. The genus Psephonema was reinstated based on 1.5-2 times length-width ratio than Planctonema and the big difference on the rbcL cpDNA gene marker and an intron insertion in the 18S rDNA. A new genus, Planctonemopsis, which represents the pyrenoid-present strains among the Planctonema-like species, was established. Planctonemopsis was positioned within Oocystaceae as a new clade and is distantly related to the other two genera. Taxonomic diversity was proven by distinctive morphological differences and phylogenetic divergence in the Planctonema-like group identified herein.


Subject(s)
Chlorophyta/classification , Phylogeny , Algal Proteins/genetics , Chlorophyta/anatomy & histology , Chlorophyta/cytology , Chlorophyta/genetics , DNA, Algal/genetics , RNA, Ribosomal, 18S/genetics , Ribulose-Bisphosphate Carboxylase/genetics , Species Specificity
11.
J Phycol ; 53(3): 522-540, 2017 06.
Article in English | MEDLINE | ID: mdl-28295311

ABSTRACT

Wittrockiella is a small genus of filamentous green algae that occurs in habitats with reduced or fluctuating salinities. Many aspects of the basic biology of these algae are still unknown and the phylogenetic relationships within the genus have not been fully explored. We provide a phylogeny based on three ribosomal markers (ITS, LSU, and SSU rDNA) of the genus, including broad intraspecific sampling for W. lyallii and W. salina, recommendations for the use of existing names are made, and highlight aspects of their physiology and life cycle. Molecular data indicate that there are five species of Wittrockiella. Two new species, W. australis and W. zosterae, are described, both are endophytes. Although W. lyallii and W. salina can be identified morphologically, there are no diagnostic morphological characters to distinguish between W. amphibia, W. australis, and W. zosterae. A range of low molecular weight carbohydrates were analyzed but proved to not be taxonomically informative. The distribution range of W. salina is extended to the Northern Hemisphere as this species has been found in brackish lakes in Japan. Furthermore, it is shown that there are no grounds to recognize W. salina var. kraftii, which was described as an endemic variety from a freshwater habitat on Lord Howe Island, Australia. Culture experiments indicate that W. australis has a preference for growth in lower salinities over full seawater. For W. amphibia and W. zosterae, sexual reproduction is documented, and the split of these species is possibly attributable to polyploidization.


Subject(s)
Chlorophyta/classification , Chlorophyta/genetics , Chlorophyta/anatomy & histology , DNA, Algal/genetics , DNA, Plant/genetics , DNA, Ribosomal Spacer/genetics , Ecosystem , Phylogeny , Salinity , Sequence Analysis, DNA
12.
J Phycol ; 53(3): 541-556, 2017 06.
Article in English | MEDLINE | ID: mdl-28078711

ABSTRACT

Identification of Cladophora species is challenging due to conservation of gross morphology, few discrete autapomorphies, and environmental influences on morphology. Twelve species of marine Cladophora were reported from North Carolina waters. Cladophora specimens were collected from inshore and offshore marine waters for DNA sequence and morphological analyses. The nuclear-encoded rRNA internal transcribed spacer regions (ITS) were sequenced for 105 specimens and used in molecular assisted identification. The ITS1 and ITS2 region was highly variable, and sequences were sorted into ITS Sets of Alignable Sequences (SASs). Sequencing of short hyper-variable ITS1 sections from Cladophora type specimens was used to positively identify species represented by SASs when the types were made available. Secondary structures for the ITS1 locus were also predicted for each specimen and compared to predicted structures from Cladophora sequences available in GenBank. Nine ITS SASs were identified and representative specimens chosen for phylogenetic analyses of 18S and 28S rRNA gene sequences to reveal relationships with other Cladophora species. Phylogenetic analyses indicated that marine Cladophorales were polyphyletic and separated into two clades, the Cladophora clade and the "Siphonocladales" clade. Morphological analyses were performed to assess the consistency of character states within species, and complement the DNA sequence analyses. These analyses revealed intra- and interspecific character state variation, and that combined molecular and morphological analyses were required for the identification of species. One new report, Cladophora dotyana, and one new species Cladophora subtilissima sp. nov., were revealed, and increased the biodiversity of North Carolina marine Cladophora to 14 species.


Subject(s)
Chlorophyta , Genes, Plant/genetics , Phylogeny , Chlorophyta/anatomy & histology , Chlorophyta/classification , Chlorophyta/genetics , DNA, Ribosomal Spacer/genetics , North Carolina , RNA, Ribosomal, 18S/genetics , RNA, Ribosomal, 28S/genetics , Sequence Analysis, DNA , Sequence Analysis, RNA , Species Specificity
13.
J Phycol ; 53(1): 218-229, 2017 02.
Article in English | MEDLINE | ID: mdl-27878825

ABSTRACT

Several subspecies are defined within Codium fragile, including the invasive C. fragile ssp. fragile, first reported in New Zealand in 1973. An endemic subspecies, C. fragile ssp. novae-zelandiae, is also found throughout New Zealand. The two subspecies exhibit morphological and molecular variation, although these have never been evaluated together. We compared variation between subspecies at locations in Auckland, identifying subspecies using rps3-rpl16 DNA sequence data, and assessing gross morphological differences, anatomical utricle characters and morphometrics. The taxonomic utility of the morphometric data sets was assessed by linear discriminant analysis. Utricle characters and measurements varied within individual thalli and between different preservation methods. The phenotypes of both subspecies were highly variable and influenced by environment. Accurate subspecies delimitation using morphological data was not possible; the discriminant analyses performed no better than chance for all combinations of the morphological data. Specimens from New Zealand, Canada, Australia and Ireland were sequenced using both the rps3-rpl16 and tufA plastid markers. The tufA elongation factor was shown to be a good candidate for differentiating subspecies of C. fragile. This marker is twice the length of the rps3-rpl16 spacer, shows greater variation between ssp. fragile and novae-zelandiae, and is less prone to sequencing error. A simple restriction enzyme digest of the tufA amplicon can distinguish ssp. fragile and ssp. novae-zelandiae. Our study expands the known range of the ssp. fragile in New Zealand, including the first record of this subspecies from the west coast of Auckland, and points to a need to re-evaluate morphological and molecular criteria for subspecies currently defined within C. fragile.


Subject(s)
Algal Proteins/genetics , Chlorophyta/anatomy & histology , Chlorophyta/genetics , Chlorophyta/classification , New Zealand , Phenotype , Phylogeny , Sequence Analysis, DNA , Specimen Handling
14.
Int J Phytoremediation ; 18(12): 1171-7, 2016 Dec.
Article in English | MEDLINE | ID: mdl-27222159

ABSTRACT

Changes induced on freshwater microalga Dictyosphaerium chlorelloides (Dc(wt)) acclimated in the laboratory until their survival in culture media enriched with cadmium 100 µM have been studied. Cadmium removal by living cells of this Cd-resistant (Dc(CdR100)) strain was tested in cultures exposed to 100 µM Cd during 30 days. Cell dimensions were measured under light microscopy, and cell growth was studied. Photosynthetic yield (ΦPSII) was analyzed and the photosynthetic oxygen development and respiration response was obtained. Results show that Dc(CdR100) strain exhibited significant cell morphology changes in comparison to Dc(wt) cells, which affected both surface area and cell biovolume. Malthusian fitness analysis showed that Dc(CdR100) strain living in Cd-enriched culture had developed a lower capacity of nearly 50% growth, and its photosynthetic oxygen development and respiration response were significantly reduced in both light and dark photosynthetic phases. Dc(CdR100) strain showed a very high capacity to remove cadmium from the aquatic environment (over 90%), although most of the removed heavy metal (≈70%) is adhered to the cell wall. These specific characteristics of Dc(CdR100) cells suggest the possibility of using this strain in conjunction with Dc(wt) strain as bioelements into a dual-head biosensor, and in bioremediation processes on freshwater polluted with Cd.


Subject(s)
Cadmium/toxicity , Chlorophyta/drug effects , Microalgae/drug effects , Water Pollutants, Chemical/toxicity , Chlorophyta/anatomy & histology , Chlorophyta/physiology , Microalgae/physiology , Waste Disposal, Fluid
15.
Am J Bot ; 103(5): 865-75, 2016 05.
Article in English | MEDLINE | ID: mdl-27208355

ABSTRACT

PREMISE OF THE STUDY: Discovery and morphological characterization of a novel epiphytic aquatic green alga increases our understanding of Chaetopeltidales, a poorly known order in Chlorophyceae. Chloroplast genomic data from this taxon reveals an unusual architecture previously unknown in green algae. METHODS: Using light and electron microscopy, we characterized the morphology and ultrastructure of a novel taxon of green algae. Bayesian phylogenetic analyses of nuclear and plastid genes were used to test the hypothesized membership of this taxon in order Chaetopeltidales. With next-generation sequence data, we assembled the plastid genome of this novel taxon and compared its gene content and architecture to that of related species to further investigate plastid genome traits. KEY RESULTS: The morphology and ultrastructure of this alga are consistent with placement in Chaetopeltidales (Chlorophyceae), but a distinct trait combination supports recognition of this alga as a new genus and species-Koshicola spirodelophila gen. et sp. nov. Its placement in the phylogeny as a descendant of a deep division in the Chaetopeltidales is supported by analysis of molecular data sets. The chloroplast genome is among the largest reported in green algae and the genes are distributed on three large (rather than a single) chromosome, in contrast to other studied green algae. CONCLUSIONS: The discovery of Koshicola spirodelophila gen. et sp. nov. highlights the importance of investigating even commonplace habitats to explore new microalgal diversity. This work expands our understanding of the morphological and chloroplast genomic features of green algae, and in particular those of the poorly studied Chaetopeltidales.


Subject(s)
Aquatic Organisms/physiology , Chlorophyta/physiology , Magnoliopsida/physiology , Base Sequence , Bayes Theorem , Chlorophyta/anatomy & histology , Chlorophyta/genetics , Chlorophyta/ultrastructure , DNA, Ribosomal/genetics , Genome, Chloroplast , Magnoliopsida/anatomy & histology , Models, Genetic , Phylogeny
16.
PLoS One ; 10(4): e0124997, 2015.
Article in English | MEDLINE | ID: mdl-25898393

ABSTRACT

The unique beauty of spherical aggregation forming algae has attracted much attention from both the scientific and lay communities. Several aegagropilous seaweeds have been identified to date, including the plants of genus Cladophora and Chaetomorpha. However, this phenomenon remains poorly understood. In July 2013, a mass occurrence of spherical Cladophora aggregations was observed in a salt field reservoir in Central Thailand. The aims of the present study were to describe the habitat of the spherical aggregations and confirm the species. We performed a field survey, internal and external morphological observations, pyrenoid ultrastructure observations, and molecular sequence analysis. Floating spherical Cladophora aggregations (1-8 cm in diameter) were observed in an area ~560 m2, on the downwind side of the reservoir where there was water movement. Individual filaments in the aggregations were entangled in each other; consequently, branches growing in different directions were observed within a clump. We suggest that water movement and morphological characteristics promote the formation of spherical aggregations in this species. The molecular sequencing results revealed that the study species was highly homologous to both C. socialis and C. coelothrix. However, the diameter of the apical cells in the study species was less than that of C. coelothrix. The pyrenoid ultrastructure was more consistent with that of C. socialis. We conclude that the study species is C. socialis. This first record of spherical aggregations in this species advances our understanding of these formations. However, further detailed physical measurements are required to fully elucidate the mechanism behind these spherical formations.


Subject(s)
Chlorophyta/anatomy & histology , Chlorophyta/genetics , DNA, Algal/genetics , Phylogeny , Chlorophyta/classification , Chlorophyta/growth & development , Ecosystem , Saline Waters , Seaweed , Sequence Analysis, DNA , Thailand
17.
N Engl J Med ; 372(10): 982-4, 2015 Mar 05.
Article in English | MEDLINE | ID: mdl-25738686

ABSTRACT

Infections with chlorophyllic algae are uncommon. Invasive infection with Desmodesmus armatus developed in two patients independently after they each sustained a penetrating freshwater injury.


Subject(s)
Chlorophyta , Foot Injuries/complications , Fresh Water , Knee Injuries/complications , Soft Tissue Infections/etiology , Wounds, Penetrating/complications , Adult , Base Sequence , Chlorophyta/anatomy & histology , Chlorophyta/genetics , Femoral Fractures/complications , Humans , Joint Dislocations/complications , Male , Phylogeny , Young Adult
18.
PLoS One ; 10(2): e0114936, 2015.
Article in English | MEDLINE | ID: mdl-25643363

ABSTRACT

During an investigation of Trentepohliales (Ulvophyceae) from tropical areas in China, four species of the genus Phycopeltis were identified: Phycopeltis aurea, P. epiphyton, P. flabellata and P. prostrata. The morphological characteristics of both young and adult thalli were observed and compared. Three species (P. flabellata, P. aurea and P. epiphyton) shared a symmetrical development with dichotomously branching vegetative cells during early stages; conversely, P. prostrata had dishevelled filaments with no dichotomously branching filaments and no symmetrical development. The adult thalli of the former three species shared common morphological characteristics, such as equally dichotomous filaments, absence of erect hair and gametangia formed in prostate vegetative filaments. Phylogenetic analyses based on SSU and ITS rDNA sequences showed that the three morphologically similar species were in a clade that was sister to a clade containing T. umbrina and T. abietina, thus confirming morphological monophyly. Conversely, Phycopeltis prostrata, a species with erect filaments, sessile gametangia on the basal erect hair, larger length/width ratio of vegetative cells and very loosely coalescent prostrate filaments, branched separately from the core Phycopeltis group and the T. umbrina and T. abietina clade. Based on morphological and molecular evidence, the genus Phycopeltis was paraphyletic. Furthermore, the traditional taxonomic criteria for Phycopeltis must be reassessed based on phylogeny using more species. A new circumscription of the Phycopeltis and the erection of new genera are recommended.


Subject(s)
Chlorophyta/anatomy & histology , Chlorophyta/classification , Phylogeny , Tropical Climate , China , Chlorophyta/genetics , Chlorophyta/growth & development , DNA, Plant/genetics
19.
Proc Natl Acad Sci U S A ; 112(8): 2314-9, 2015 Feb 24.
Article in English | MEDLINE | ID: mdl-25675478

ABSTRACT

Trace metals play important roles in normal and in disease-causing biological functions. X-ray fluorescence microscopy reveals trace elements with no dependence on binding affinities (unlike with visible light fluorophores) and with improved sensitivity relative to electron probes. However, X-ray fluorescence is not very sensitive for showing the light elements that comprise the majority of cellular material. Here we show that X-ray ptychography can be combined with fluorescence to image both cellular structure and trace element distribution in frozen-hydrated cells at cryogenic temperatures, with high structural and chemical fidelity. Ptychographic reconstruction algorithms deliver phase and absorption contrast images at a resolution beyond that of the illuminating lens or beam size. Using 5.2-keV X-rays, we have obtained sub-30-nm resolution structural images and ∼90-nm-resolution fluorescence images of several elements in frozen-hydrated green algae. This combined approach offers a way to study the role of trace elements in their structural context.


Subject(s)
Chlorophyta/anatomy & histology , Freezing , Imaging, Three-Dimensional/methods , X-Ray Diffraction/methods , Chlorophyta/cytology , Microscopy, Fluorescence
20.
Methods Mol Biol ; 1242: 1-21, 2015.
Article in English | MEDLINE | ID: mdl-25408439

ABSTRACT

The growth of a plant cell encompasses a complex set of subcellular components interacting in a highly coordinated fashion. Ultimately, these activities create specific cell wall structural domains that regulate the prime force of expansion, internally generated turgor pressure. The precise organization of the polymeric networks of the cell wall around the protoplast also contributes to the direction of growth, the shape of the cell, and the proper positioning of the cell in a tissue. In essence, plant cell expansion represents the foundation of development. Most studies of plant cell expansion have focused primarily upon late divergent multicellular land plants and specialized cell types (e.g., pollen tubes, root hairs). Here, we describe a unicellular green alga, Penium margaritaceum (Penium), which can serve as a valuable model organism for understanding cell expansion and the underlying mechanics of the cell wall in a single plant cell.


Subject(s)
Cell Wall/metabolism , Chlorophyta/cytology , Models, Biological , Plant Cells/ultrastructure , Cell Culture Techniques , Cell Wall/ultrastructure , Chlorophyta/anatomy & histology , Chlorophyta/growth & development , Chlorophyta/metabolism , Microscopy, Electron, Transmission , Plant Cells/metabolism , Protoplasts
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