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1.
Genes Chromosomes Cancer ; 60(12): 808-821, 2021 12.
Article in English | MEDLINE | ID: mdl-34405474

ABSTRACT

An initiating DNA double strand break (DSB) event precedes the formation of cancer-driven chromosomal abnormalities, such as gene rearrangements. Therefore, measuring DNA breaks at rearrangement-participating regions can provide a unique tool to identify and characterize susceptible individuals. Here, we developed a highly sensitive and low-input DNA break mapping method, the first of its kind for patient samples. We then measured genome-wide DNA breakage in normal cells of acute myeloid leukemia (AML) patients with KMT2A (previously MLL) rearrangements, compared to that of nonfusion AML individuals, as a means to evaluate individual susceptibility to gene rearrangements. DNA breakage at the KMT2A gene region was significantly greater in fusion-driven remission individuals, as compared to nonfusion individuals. Moreover, we identified select topoisomerase II (TOP2)-sensitive and CCCTC-binding factor (CTCF)/cohesin-binding sites with preferential DNA breakage in fusion-driven patients. Importantly, measuring DSBs at these sites, in addition to the KMT2A gene region, provided greater predictive power when assessing individual break susceptibility. We also demonstrated that low-dose etoposide exposure further elevated DNA breakage at these regions in fusion-driven AML patients, but not in nonfusion patients, indicating that these sites are preferentially sensitive to TOP2 activity in fusion-driven AML patients. These results support that mapping of DSBs in patients enables discovery of novel break-prone regions and monitoring of individuals susceptible to chromosomal abnormalities, and thus cancer. This will build the foundation for early detection of cancer-susceptible individuals, as well as those preferentially susceptible to therapy-related malignancies caused by treatment with TOP2 poisons.


Subject(s)
CCCTC-Binding Factor/genetics , DNA Topoisomerases, Type II/genetics , Histone-Lysine N-Methyltransferase/genetics , Leukemia, Myeloid, Acute/genetics , Myeloid-Lymphoid Leukemia Protein/genetics , Poly-ADP-Ribose Binding Proteins/genetics , Binding Sites/genetics , CCCTC-Binding Factor/blood , Cell Cycle Proteins/blood , Cell Cycle Proteins/genetics , Chondroitin Sulfate Proteoglycans/blood , Chondroitin Sulfate Proteoglycans/genetics , Chromosomal Proteins, Non-Histone/blood , Chromosomal Proteins, Non-Histone/genetics , Chromosome Aberrations , DNA Breaks, Double-Stranded/drug effects , DNA Repair/genetics , DNA Topoisomerases, Type II/blood , DNA-Binding Proteins/blood , DNA-Binding Proteins/genetics , Etoposide/pharmacology , Female , Gene Rearrangement/genetics , Genome, Human/genetics , HeLa Cells , Histone-Lysine N-Methyltransferase/blood , Humans , Leukemia, Myeloid, Acute/blood , Leukemia, Myeloid, Acute/pathology , Male , Myeloid-Lymphoid Leukemia Protein/blood , Oncogene Proteins, Fusion/genetics , Poly-ADP-Ribose Binding Proteins/blood , Cohesins
2.
Cells ; 8(9)2019 08 28.
Article in English | MEDLINE | ID: mdl-31466397

ABSTRACT

Diffuse gliomas are the most common primary malignant brain tumor. Although extracranial metastases are rarely observed, recent studies have shown the presence of circulating tumor cells (CTCs) in the blood of glioma patients, confirming that a subset of tumor cells are capable of entering the circulation. The isolation and characterization of CTCs could provide a non-invasive method for repeated analysis of the mutational and phenotypic state of the tumor during the course of disease. However, the efficient detection of glioma CTCs has proven to be challenging due to the lack of consistently expressed tumor markers and high inter- and intra-tumor heterogeneity. Thus, for this field to progress, an omnipresent but specific marker of glioma CTCs is required. In this article, we demonstrate how the recombinant malaria VAR2CSA protein (rVAR2) can be used for the capture and detection of glioma cell lines that are spiked into blood through binding to a cancer-specific oncofetal chondroitin sulfate (ofCS). When using rVAR2 pull-down from glioma cells, we identified a panel of proteoglycans, known to be essential for glioma progression. Finally, the clinical feasibility of this work is supported by the rVAR2-based isolation and detection of CTCs from glioma patient blood samples, which highlights ofCS as a potential clinical target for CTC isolation.


Subject(s)
Antigens, Protozoan/pharmacology , Biomarkers, Tumor/blood , Brain Neoplasms/diagnosis , Cell Separation/methods , Glioma/diagnosis , Neoplastic Cells, Circulating/metabolism , Brain Neoplasms/metabolism , Cell Count/methods , Cell Line, Tumor , Chondroitin Sulfate Proteoglycans/blood , Glioma/metabolism , Humans , Proof of Concept Study , Recombinant Proteins/pharmacology
3.
FASEB J ; 33(1): 231-238, 2019 01.
Article in English | MEDLINE | ID: mdl-29924942

ABSTRACT

Exosomes derived from chondroitin sulfate proteoglycan (CSPG) 4 type neural precursor cells (CSPG4Es) were purified from human plasma by sequential immunoabsorption with anti-CSPG4 and anti-platelet growth factor receptor α mAb to characterize the potential in vivo roles of CSPG4 cells in neuronal repair. Hepatocyte growth factor, fibroblast growth factors (FGFs)-2 and -13, and type 1 insulin-like growth factor (IGF-1), which enhance neuronal survival and functions, were quantified in CSPG4E extracts. For CSPG4Es of 24 healthy control subjects, mean levels of hepatocyte growth factor, FGF-13, and IGF-1, but not FGF-2, were significantly higher by up to 7-fold than in their neuronal-derived exosomes, and mean levels of all 4 growth factors were significantly higher by up to 8-fold than in their astrocyte-derived exosomes. Mean CSPG4E levels of all growth factors were significantly lower in patients with mild Alzheimer disease (AD) ( n = 24) than in age- and sex-matched cognitively normal control subjects ( n = 24). Mean CSPG4E levels of all growth factors were also significantly lower in 15 patients at the stage of moderate dementia from AD (AD2) and at their preclinical stage 3 to 8 yr earlier (AD1), with no differences between values at stages AD1 and AD2. Current findings suggest that CSPG4 cells export in exosomes higher levels of neurotrophic factors than neurons or astrocytes and that CSPG4E neurotrophic factors are diminished early in AD, with no significant progression of decreases later in the course.-Goetzl, E. J., Nogueras-Ortiz, C., Mustapic, M., Mullins, R. J., Abner, E. L., Schwartz, J. B., Kapogiannis, D. Deficient neurotrophic factors of CSPG4-type neural cell exosomes in Alzheimer disease.


Subject(s)
Alzheimer Disease/diagnosis , Biomarkers/analysis , Chondroitin Sulfate Proteoglycans/blood , Chondroitin Sulfate Proteoglycans/cerebrospinal fluid , Exosomes/metabolism , Membrane Proteins/blood , Membrane Proteins/cerebrospinal fluid , Nerve Growth Factors/blood , Nerve Growth Factors/cerebrospinal fluid , Aged , Aged, 80 and over , Alzheimer Disease/blood , Alzheimer Disease/cerebrospinal fluid , Case-Control Studies , Cross-Sectional Studies , Female , Humans , Longitudinal Studies , Male , Retrospective Studies
4.
Arthritis Res Ther ; 16(5): 456, 2014 Oct 07.
Article in English | MEDLINE | ID: mdl-25287745

ABSTRACT

INTRODUCTION: Biomarkers to identify osteoarthritis (OA) patients at risk for disease progression are needed. As part of a proteomic analysis of knee synovial fluid from normal and OA patients, differentially expressed proteins were identified that could represent potential biomarkers for OA. This study aimed to use mass spectrometry assays to identify representative peptides from several proteins in synovial fluid and peripheral blood, and assess their levels as biomarkers of OA progression. METHODS: Multiplexed high throughput selected reaction monitoring (SRM) assays were developed to measure tryptic peptides representative of 23 proteins in matched serum and synovial fluid samples from late OA subjects at the time of joint replacement. Subsequently plasma samples from the baseline visit of 173 subjects in an observational OA cohort were tested by SRM for peptides from nine of these proteins: afamin, clusterin, cartilage oligomeric matrix protein, hepatocyte growth factor, kallistatin, insulin-like growth factor binding protein, acid labile subunit, lubricin, lumican, and pigment epithelium-derived factor. Linear regression was used to determine the association between the peptide biomarker level at baseline and change in joint space width (ΔJSW) from baseline to 30 months, adjusting for age and sex. RESULTS: In the matched cohort, 17 proteins could be identified in synovial fluid and 16 proteins were detected in serum. For the progression cohort, the average age was 62 and average ΔJSW over 30 months was 0.68 mm. A high correlation between different peptides from individual proteins was observed, indicating our assays correctly measured their target proteins. Peptides representative of clusterin, lumican and lubricin showed statistically significant associations with joint space narrowing after adjustment for age and sex. Partial R2 values showed clusterin FMETVAEK and lubricin LVEVNPK peptide biomarkers explains about 2 to 3% of the variability of ΔJSW, similar to that explained by age. A biomarker score combining normalized data for both lubricin and clusterin peptides increased the model R2 to 0.079. CONCLUSIONS: Our results suggest that when combined, levels of peptides representative of clusterin and lubricin in plasma are as predictive of OA progression as age. Replication of these findings in other prospective OA cohorts is planned.


Subject(s)
Biomarkers/analysis , Mass Spectrometry/methods , Osteoarthritis, Knee/diagnostic imaging , Proteome/analysis , Proteomics/methods , Aged , Amino Acid Sequence , Biomarkers/blood , Biomarkers/metabolism , Chondroitin Sulfate Proteoglycans/analysis , Chondroitin Sulfate Proteoglycans/blood , Chondroitin Sulfate Proteoglycans/metabolism , Clusterin/analysis , Clusterin/blood , Clusterin/metabolism , Cohort Studies , Disease Progression , Female , Glycoproteins/analysis , Glycoproteins/blood , Glycoproteins/metabolism , Humans , Keratan Sulfate/analysis , Keratan Sulfate/blood , Keratan Sulfate/metabolism , Linear Models , Lumican , Male , Middle Aged , Osteoarthritis, Knee/blood , Osteoarthritis, Knee/metabolism , Peptides/analysis , Prognosis , Proteome/metabolism , Radiography , Synovial Fluid/metabolism
5.
Hum Hered ; 75(1): 34-43, 2013.
Article in English | MEDLINE | ID: mdl-23594525

ABSTRACT

OBJECTIVE: Obesity-associated non-alcoholic fatty liver disease (NAFLD) may cause liver dysfunction and failure. In a previously reported genome-wide association meta-analysis, single nucleotide polymorphisms (SNPs) near PNPLA3, NCAN, GCKR, LYPLAL1 and PPP1R3B were associated with NAFLD and with distinctive serum lipid profiles. The present study examined the relevance of these variants to NAFLD in extreme obesity. METHODS: In 1,092 bariatric surgery patients, the candidate SNPs were genotyped and association analyses with liver histology and serum lipids were performed. RESULTS: We replicated the association of hepatosteatosis with PNPLA3 rs738409[G] and with NCAN rs2228603[T]. We also replicated the association of rs2228603[T] with hepatic inflammation and fibrosis. rs2228603[T] was associated with lower serum low-density lipoprotein, total cholesterol and triglycerides. After stratification by the presence or absence of NAFLD, these associations were present predominantly in the subgroup with NAFLD. CONCLUSION: NCAN rs2228603[T] is a risk factor for liver inflammation and fibrosis, suggesting that this locus is responsible for progression from steatosis to steatohepatitis. In this bariatric cohort, rs2228603[T] was associated with low serum lipids only in patients with NAFLD. This supports a NAFLD model in which the liver may sequester triglycerides as a result of either increased triglyceride uptake and/or decreased lipolysis.


Subject(s)
Chondroitin Sulfate Proteoglycans/genetics , Fatty Liver/genetics , Lectins, C-Type/genetics , Liver Cirrhosis/genetics , Nerve Tissue Proteins/genetics , Obesity, Morbid/genetics , Adult , Cholesterol/blood , Chondroitin Sulfate Proteoglycans/blood , Fatty Liver/blood , Female , Genetic Variation , Genotype , Humans , Lectins, C-Type/blood , Liver Cirrhosis/blood , Male , Middle Aged , Nerve Tissue Proteins/blood , Neurocan , Non-alcoholic Fatty Liver Disease , Obesity, Morbid/blood , Polymorphism, Single Nucleotide , Triglycerides/blood
6.
J Proteome Res ; 11(3): 1937-48, 2012 Mar 02.
Article in English | MEDLINE | ID: mdl-22316387

ABSTRACT

Biomarkers are most frequently proteins that are measured in the blood. Their development largely relies on antibody creation to test the protein candidate performance in blood samples of diseased versus nondiseased patients. The creation of such antibody assays has been a bottleneck in biomarker progress due to the cost, extensive time, and effort required to complete the task. Targeted proteomics is an emerging technology that is playing an increasingly important role to facilitate disease biomarker development. In this study, we applied a SRM-based targeted proteomics platform to directly detect candidate biomarker proteins in plasma to evaluate their clinical utility for pancreatic cancer detection. The characterization of these protein candidates used a clinically well-characterized cohort that included plasma samples from patients with pancreatic cancer, chronic pancreatitis, and healthy age-matched controls. Three of the five candidate proteins, including gelsolin, lumican, and tissue inhibitor of metalloproteinase 1, demonstrated an AUC value greater than 0.75 in distinguishing pancreatic cancer from the controls. In addition, we provide an analysis of the reproducibility, accuracy, and robustness of the SRM-based proteomics platform. This information addresses important technical issues that could aid in the adoption of the targeted proteomics platform for practical clinical utility.


Subject(s)
Biomarkers, Tumor/blood , Carcinoma, Pancreatic Ductal/blood , Pancreatic Neoplasms/blood , 14-3-3 Proteins/blood , 14-3-3 Proteins/chemistry , Amino Acid Sequence , Area Under Curve , Biomarkers, Tumor/chemistry , Case-Control Studies , Chondroitin Sulfate Proteoglycans/blood , Chondroitin Sulfate Proteoglycans/chemistry , Enzyme-Linked Immunosorbent Assay , Exonucleases/blood , Exonucleases/chemistry , Exoribonucleases , Gelsolin/blood , Gelsolin/chemistry , Humans , Keratan Sulfate/blood , Keratan Sulfate/chemistry , Lumican , Molecular Sequence Data , Peptide Fragments/chemistry , Peptide Mapping , Pilot Projects , Proteomics , ROC Curve , Tissue Inhibitor of Metalloproteinase-1/blood , Tissue Inhibitor of Metalloproteinase-1/chemistry
7.
Biomed Chromatogr ; 25(7): 748-50, 2011 Jul.
Article in English | MEDLINE | ID: mdl-20963781

ABSTRACT

Glycosaminoglycans (GAGs) are functionally important molecules of the arterial wall and play a crucial role in atherogenesis. Chondroitin sulfate/dermatan sulfate proteoglycans (CS/DSPGs) participate in several biological events through their GAG chains, and are also involved in the development of atherosclerosis. The aim of this study was to compare the pre- and post-operative levels of CS in serum of patients after coronary artery bypass graft surgery using a highly sensitive reversed-polarity capillary electrophoresis method and to investigate the correlation of CS with common biochemical lipid markers. It was found that CS values were significantly higher for all patients post-operatively and, furthermore, CS levels were statistically correlated to apolipoprotein A and B levels. Notably, the pre-operational lipid profile of the patient may be indicative of the values of 4-sulfated CS post-operationally. Furthermore, the obtained results highlight the clinical significance of CS levels in serum, since they may provide complementary information for the latent inflammatory state of the patient.


Subject(s)
Chondroitin Sulfates/blood , Coronary Artery Bypass , Adult , Aged , Aged, 80 and over , Apolipoproteins A/blood , Apolipoproteins B/blood , Biomarkers/blood , Chondroitin Sulfate Proteoglycans/blood , Drug Monitoring/methods , Electrophoresis, Capillary , Female , Humans , Linear Models , Male , Middle Aged , Postoperative Period , Preoperative Period , Sensitivity and Specificity
8.
J Biomed Biotechnol ; 2011: 920763, 2011.
Article in English | MEDLINE | ID: mdl-22228989

ABSTRACT

Acute aortic dissection (AAD) is a serious vascular disease. Currently the diagnosis relies on clinical and radiological means whereas serum biomarkers are lacking. The purpose of this study was to identify potential serum biomarkers for AAD using isobaric tags for relative and absolute quantitation (iTRAQ) approach. A total of 120 serum samples were collected from three groups: AAD patients (n = 60), patients with acute myocardial infarction (AMI, n = 30), and healthy volunteers (n = 30), whereas the first 10 samples from each group were used for iTRAQ analysis. Using iTRAQ approach, a total of 174 proteins were identified as significantly different between AAD patients and healthy subjects. Among them, forty-six proteins increased more than twofold, full-scale analysis using serum sample for the entire 120 subjects demonstrated that Lumican level was significantly increased relative to control and AMI samples. Further, Lumican level correlated with time from onset to admission in AAD but not AMI samples. Using iTRAQ approach, our study showed that Lumican may be a potential AAD-related serum marker that may assist the diagnosis of AAD.


Subject(s)
Aortic Aneurysm/blood , Aortic Dissection/blood , Chondroitin Sulfate Proteoglycans/blood , Isotope Labeling/methods , Keratan Sulfate/blood , Proteomics/methods , Biomarkers/blood , Case-Control Studies , Enzyme-Linked Immunosorbent Assay , Female , Hospitalization , Humans , Lumican , Male , Middle Aged , Myocardial Infarction/blood , Proteome/classification , Time Factors
9.
Proteomics Clin Appl ; 4(6-7): 644-53, 2010 Jul.
Article in English | MEDLINE | ID: mdl-21137083

ABSTRACT

PURPOSE: Diabetic nephropathy (DN) is a serious complication of diabetes mellitus. Microalbuminuria has been established as a risk factor for the development of diabetic renal disease. Recently, microalbuminuria has been reported to have limitations in determining disease risk and predicting DN. Therefore, identification of more specific biomarkers for prediction of DN is needed. EXPERIMENTAL DESIGN: When kidney damage is initiated, glycoprotein leakage into the blood may occur, thus altering the glycoproteome profile of the blood. Here, we have used a combined approach of glycoprotein enrichment of plasma with a proteomic analysis to discover potential DN biomarkers. We isolated glycoproteins from plasma provided by six type 2 diabetes control (DC) and six type 2 DN patients using multi-lectin affinity chromatography. Captured glycoproteins were resolved by 1-D PAGE and tryptic digests of isolated proteins were analyzed by LC-MS/MS. RESULTS: From the comparative and semi-quantitative proteome analysis, we identified 13 up- and 14 down-regulated glycoproteins in DN plasma. Among the up-regulated glycoproteins, the levels of lumican, vasorin and retinol binding protein-4 were verified by Western blot analysis of individual plasma samples. CONCLUSION AND CLINICAL RELEVANCE: Collectively, our findings show that biomarker discovery has considerable potential for predicting diabetic nephropathy in diabetic patients.


Subject(s)
Biomarkers/blood , Diabetes Mellitus, Type 2/blood , Diabetic Nephropathies/blood , Glycoproteins/blood , Carrier Proteins/blood , Chondroitin Sulfate Proteoglycans/blood , Chromatography, Affinity , Chromatography, Liquid , Diabetic Nephropathies/diagnosis , Humans , Keratan Sulfate/blood , Lumican , Male , Membrane Proteins/blood , Middle Aged , Retinol-Binding Proteins, Plasma/analysis , Tandem Mass Spectrometry
10.
J Proteome Res ; 7(2): 698-707, 2008 Feb.
Article in English | MEDLINE | ID: mdl-18092746

ABSTRACT

Novel biomarkers of type 1 diabetes must be identified and validated in initial, exploratory studies before they can be assessed in proficiency evaluations. Currently, untargeted "-omics" approaches are underutilized in profiling studies of clinical samples. This report describes the evaluation of capillary liquid chromatography (LC) coupled with mass spectrometry (MS) in a pilot proteomic analysis of human plasma and serum from a subset of control and type 1 diabetic individuals enrolled in the Diabetes Autoantibody Standardization Program, with the goal of identifying candidate biomarkers of type 1 diabetes. Initial high-resolution capillary LC-MS/MS experiments were performed to augment an existing plasma peptide database, while subsequent LC-FTICR studies identified quantitative differences in the abundance of plasma proteins. Analysis of LC-FTICR proteomic data identified five candidate protein biomarkers of type 1 diabetes. alpha-2-Glycoprotein 1 (zinc), corticosteroid-binding globulin, and lumican were 2-fold up-regulated in type 1 diabetic samples relative to control samples, whereas clusterin and serotransferrin were 2-fold up-regulated in control samples relative to type 1 diabetic samples. Observed perturbations in the levels of all five proteins are consistent with the metabolic aberrations found in type 1 diabetes. While the discovery of these candidate protein biomarkers of type 1 diabetes is encouraging, follow up studies are required for validation in a larger population of individuals and for determination of laboratory-defined sensitivity and specificity values using blinded samples.


Subject(s)
Autoantibodies , Diabetes Mellitus, Type 1/immunology , Proteomics , Adipokines , Biomarkers/blood , Carrier Proteins/blood , Carrier Proteins/immunology , Chondroitin Sulfate Proteoglycans/blood , Chondroitin Sulfate Proteoglycans/immunology , Chromatography, Liquid/standards , Diabetes Mellitus, Type 1/diagnosis , Follow-Up Studies , Glycoproteins/blood , Glycoproteins/immunology , Humans , Keratan Sulfate/blood , Keratan Sulfate/immunology , Lumican , Tandem Mass Spectrometry/standards , Transcortin/immunology , Transcortin/metabolism
11.
Anal Bioanal Chem ; 388(8): 1839-46, 2007 Aug.
Article in English | MEDLINE | ID: mdl-17579847

ABSTRACT

A flow injection (FI) system with a mini-immunoaffinity chromatographic column was used to perform on-line assays of specific proteoglycans. The 300-microL mini-column contained beads coupled with monoclonal antibodies against the specific sulfation pattern of chondroitin sulfate proteoglycans, which have been reported to be a potential biomarker for cancer. The amount of these proteoglycans present was estimated indirectly from their protein content using the Bradford assay, which is an alternative to a direct carbohydrate assay. The system developed was tested by assaying for chondroitin sulfate proteoglycans in sera from patients with various cancers and comparing the results to those obtained for sera from healthy people. The results indicated that this approach could be used as a cost-effective alternative system for determining the amount of these specific biomarker proteoglycans. The column could be reused at least 90 times, with each run consisting of 200 microL of serum sample diluted twofold; an analysis rate of 30 min per run was achieved, as compared to 4 h for a batch procedure.


Subject(s)
Chondroitin Sulfate Proteoglycans/blood , Chromatography, Affinity/methods , Biomarkers, Tumor/blood , Case-Control Studies , Female , Flow Injection Analysis/methods , Humans , Immunoassay , Ovarian Neoplasms/chemistry , Ovarian Neoplasms/diagnosis
12.
Arthritis Rheum ; 54(8): 2496-504, 2006 Aug.
Article in English | MEDLINE | ID: mdl-16868970

ABSTRACT

OBJECTIVE: To evaluate diurnal variation of biomarkers in subjects with osteoarthritis (OA) of the knee. METHODS: Twenty subjects with radiographic knee OA were admitted to the General Clinical Research Center of Duke University for an overnight stay to undergo serial blood and urine sampling. Biomarkers measured included serum hyaluronan (HA), cartilage oligomeric matrix protein (COMP), keratan sulfate (KS-5D4), aggrecan neoepitope (CS846), high-sensitivity C-reactive protein (hsCRP), osteocalcin, transforming growth factor beta1 (TGFbeta1), and type II collagen (CII)-related epitopes (neoepitope from cleavage of CII [C2C], carboxy-terminus of three-quarter peptide from cleavage of CI and CII [C1,2C], and type II procollagen carboxy-propeptide [CPII] in serum, and C-terminal telopeptides of CII [CTX-II] and C2C in urine). RESULTS: Levels of serum HA, COMP, KS-5D4, and TGFbeta1 increased significantly from T0 (before arising from bed) to T1 (1 hour after arising). More diurnal variation in HA was observed in patients with higher daily mean HA concentrations. CPII increased significantly from T0 to T2 (4 hours after arising). Urinary concentrations of CTX-II were also found to vary with morning activity, decreasing significantly from T0 to T2. Urinary C2C concentrations increased significantly from T0 until T3 (early evening). No diurnal variations in CS846, hsCRP, osteocalcin, serum C2C, or C1,2C were observed. Six biomarkers (serum C2C, C1,2C, COMP, KS-5D4, TGFbeta1, and urinary CTX-II) were associated with radiographic knee OA (expressed as the sum of Kellgren/Lawrence radiographic severity grades), with the strongest correlations observed with measurements obtained at later time points (either T2 or T3). CONCLUSION: Our study results suggest that serum and urine sampling for HA, COMP, KS-5D4, TGFbeta1, CPII, urinary CTX-II, and urinary C2C should be standardized in future OA clinical trials. Serum and urine sampling at late midday time points may be the optimal approach for OA studies, although this result should be validated in a larger cohort.


Subject(s)
Biomarkers/blood , Biomarkers/urine , Circadian Rhythm , Osteoarthritis, Knee , Aggrecans , C-Reactive Protein/analysis , Cartilage Oligomeric Matrix Protein , Chondroitin Sulfate Proteoglycans/blood , Collagen Type II/blood , Collagen Type II/urine , Extracellular Matrix Proteins/blood , Glycoproteins/blood , Humans , Hyaluronic Acid/blood , Keratan Sulfate/blood , Lectins, C-Type/blood , Matrilin Proteins , Osteoarthritis, Knee/blood , Osteoarthritis, Knee/pathology , Osteoarthritis, Knee/urine , Osteocalcin/blood , Peptide Fragments/urine , Procollagen/urine , Transforming Growth Factor beta/blood , Transforming Growth Factor beta1
13.
J Immunol ; 163(4): 2135-42, 1999 Aug 15.
Article in English | MEDLINE | ID: mdl-10438954

ABSTRACT

The vitamin D binding protein (DBP) is a multifunctional plasma protein that can modulate certain immune and inflammatory responses. The diverse cellular functions of DBP appear to require cell surface binding to mediate these processes. Numerous reports have detected DBP bound to the surface of several cell types and would support the concept of a cell surface binding site for DBP. However, direct evidence for such a molecule has been lacking and essentially nothing is known about its basic biochemical properties. In the present study, radioiodinated DBP was used as a probe to characterize biochemically the neutrophil DBP binding site. Radiolabeled DBP binds to and remains associated with the plasma membrane and is not degraded. Quantitation of DBP binding to either intact cells or purified plasma membranes showed nonsaturable (linear) binding with positive cooperativity, possibly suggesting DBP oligomer formation. Solubilization of cell bound 125I-DBP with various nonionic and zwitterionic detergents demonstrated that DBP binds to a membrane macromolecule that partitions to the detergent insoluble fraction. Moreover, this molecule does not associate with the cytoskeleton. Cross-linking of radiolabeled DBP bound to plasma membranes increased the amount of protein that partitioned to the insoluble fraction, and analysis of these complexes by SDS-PAGE revealed that they may be very large since they did not enter the gel. Finally, treatment of plasma membranes with either proteases or chondroitinase ABC completely abrogated membrane binding of DBP, suggesting that the protein binds to a chondroitin sulfate proteoglycan.


Subject(s)
Chondroitin Sulfate Proteoglycans/blood , Chondroitin Sulfate Proteoglycans/chemistry , Neutrophils/chemistry , Neutrophils/metabolism , Vitamin D-Binding Protein/blood , Vitamin D-Binding Protein/chemistry , Binding Sites , Cell Membrane/chemistry , Cell Membrane/metabolism , Chemotaxis, Leukocyte , Cross-Linking Reagents , Detergents , Humans , Iodine Radioisotopes , Kinetics , Macromolecular Substances , Molecular Weight , Precipitin Tests , Protein Binding , Solubility
14.
J Biol Chem ; 271(16): 9759-63, 1996 Apr 19.
Article in English | MEDLINE | ID: mdl-8621655

ABSTRACT

Previous studies showed that the keratan sulfate-containing proteoglycans of bovine corneal stroma contain three unique core proteins designated 37A, 37B, and 25 (Funderburgh, J. L., Funderburgh, M. L., Mann, M. M., and Conrad, G. W. (1991) J. Biol. Chem. 266, 14226-14231). Degenerate oligonucleotides designed from amino acid sequences of the 37A protein were used to screen a cDNA expression library from cultured bovine keratocytes. A cDNA clone coding for keratocan, a 37A protein, was isolated and sequenced. The deduced keratocan amino acid sequence is unique but related to two other keratan sulfate-containing proteins, lumican (the 37B core protein) and fibromodulin. These three proteins share approximately 35% amino acid identity and a number of conserved structural features. Northern hybridization and immunoblotting of tissue extracts found keratocan distribution to be more limited than that of lumican or fibromodulin. Keratocan is abundant in cornea and sclera and detected in much lesser amounts in skin, ligament, cartilage, artery, and striated muscles. Only in cornea was keratocan found to contain large, sulfated keratan sulfate chains. Keratocan, like lumican, is a core protein of a major corneal proteoglycan but is present in non-corneal tissues primarily as a nonsulfated glycoprotein.


Subject(s)
Chondroitin Sulfate Proteoglycans/blood , Cornea/metabolism , Extracellular Matrix Proteins , Keratan Sulfate/blood , Proteoglycans/biosynthesis , Amino Acid Sequence , Animals , Base Sequence , Carrier Proteins/chemistry , Cattle , Cells, Cultured , Chondroitin Sulfate Proteoglycans/analysis , Chondroitin Sulfate Proteoglycans/chemistry , Cloning, Molecular , Cornea/cytology , Fibromodulin , Gene Expression , Gene Library , Keratan Sulfate/analysis , Keratan Sulfate/chemistry , Lumican , Molecular Sequence Data , Organ Specificity , Phylogeny , Proteoglycans/analysis , Proteoglycans/chemistry , RNA, Messenger/analysis , RNA, Messenger/biosynthesis , Sequence Homology, Amino Acid
15.
J Comp Neurol ; 366(1): 34-43, 1996 Feb 26.
Article in English | MEDLINE | ID: mdl-8866844

ABSTRACT

We have used in situ hybridization histochemistry to examine the cellular sites of synthesis of two major nervous tissue proteoglycans, neurocan and phosphacan, in embryonic and postnatal rat brain and spinal cord. Both proteoglycans were detected only in nervous tissue. Neurocan mRNA was evident in neurons, including cerebellar granule cells and Purkinje cells, and in neurons of the hippocampal formation and cerebellar nuclei. In contrast, phosphacan message was detected only in astroglia, such as the Golgi epithelial cells of the cerebellum. At embryonic day 13-16, phosphacan mRNA is largely confined to areas of active cell proliferation (e.g., the ventricular zone of the ganglionic eminence and septal area of the brain and the ependymal layer surrounding the central canal of the spinal cord) as well as being present in the roof plate. The distribution of neurocan message is more widespread, extending to the cortex, hippocampal formation, caudate putamen, and basal telencephalic neuroepithelium, and neurocan mRNA is present in both the ependymal and mantle layers of the spinal cord but not in the roof plate. The presence of neurocan mRNA in areas where the proteoglycan is not expressed suggests that the short open reading frame in the 5'-leader of neurocan may function as a cis-acting regulatory signal for the modulation of neurocan expression in the developing central nervous system.


Subject(s)
Central Nervous System/growth & development , Chondroitin Sulfate Proteoglycans/blood , Nerve Tissue Proteins/blood , Proteoglycans/blood , RNA, Messenger/metabolism , Animals , Animals, Newborn , Central Nervous System/metabolism , Histocytochemistry , In Situ Hybridization , Lectins, C-Type , Neurocan , Proteoglycans/metabolism , Rats , Receptor-Like Protein Tyrosine Phosphatases, Class 5 , Spinal Cord/metabolism
16.
Clin Chim Acta ; 225(1): 43-55, 1994 Feb.
Article in English | MEDLINE | ID: mdl-8033353

ABSTRACT

Immunological assays for fragments of the cartilage large aggregating proteoglycan, aggrecan, have been widely used to monitor cartilage turnover. These assays have commonly employed the monoclonal keratan sulphate antibody, 5D4. Keratan sulphate, however, is present in many tissues and 5D4 affinity is critically dependent on antigen structure. We have therefore raised and characterized a monoclonal antibody (1-F21) that reacts with the core protein of aggrecan without interference from the glycosaminoglycan side chains and, using this antibody, we have optimized a sensitive, competitive ELISA. The within-assay and between-assay coefficients of variation were 4.9-8.9% and 11.1-13.0%, respectively. The mean concentrations of core protein in synovial fluid, serum and urine were 76.4 micrograms/ml, 104.0 ng/ml and 81.0 ng/ml, respectively. In synovial fluids the concentrations were closely correlated with the concentrations of keratan sulphate as determined by 5D4 (r = 0.94), whereas in serum and urine there was no obvious correlation between the determinations. These findings show that measurement of both core protein and keratan sulphate results in a more precise description of aggrecan turnover.


Subject(s)
Extracellular Matrix Proteins , Keratan Sulfate/analysis , Proteoglycans/analysis , Synovial Fluid/chemistry , Aggrecans , Animals , Antibodies, Monoclonal , Cartilage/chemistry , Chondroitin Sulfate Proteoglycans/analysis , Chondroitin Sulfate Proteoglycans/blood , Chondroitin Sulfate Proteoglycans/urine , Enzyme-Linked Immunosorbent Assay , Humans , Keratan Sulfate/blood , Keratan Sulfate/urine , Lectins, C-Type , Mice , Proteins/immunology , Proteoglycans/blood , Proteoglycans/urine , Sensitivity and Specificity
17.
J Clin Invest ; 93(1): 303-10, 1994 Jan.
Article in English | MEDLINE | ID: mdl-8282801

ABSTRACT

The C1q inhibitor, C1qI, an approximately 30-kD circulating chondroitin-4 sulfate proteoglycan, displayed concentration-dependent prolongation of plasma and fibrinogen solution clotting times. Under factor XIIIa catalyzed cross-linking conditions and maximum C1qI concentrations, minor amounts of clot formed displaying complete gamma-gamma dimer formation but virtually no alpha-polymer formation. The anticoagulant effect was undiminished by its binding to C1q, by increased ionic strength, and by CaCl2, but was abolished by incubation of C1qI with chondroitinase ABC. 125I-labeled C1qI bound to immobilized fibrinogen, fibrin monomer, fibrinogen plasmic fragments D1 and E, and fibrin polymers. Occupancy on the E domain required uncleaved fibrinopeptides together with another structure(s), and it did not decrease binding of thrombin to fibrinogen. Occupancy on the D domain did not decrease the fibrinogen binding to fibrin monomer. We conclude that the E domain occupancy impaired fibrinopeptide cleavage, and occupancy on the D domain impaired polymerization, both steric hindrance effects. C1qI binding to fibrinogen explains at least in part the well-known fibrin(ogen) presence in immune complex-related lesions, and the fibrinogen presence in vascular basement membranes and atheromata. We postulate that fibrin binding by resident basement membrane proteoglycans provides dense anchoring of thrombus, substantially enhancing its hemostatic function.


Subject(s)
Anticoagulants/metabolism , Chondroitin Sulfate Proteoglycans/blood , Fibrinogen/metabolism , Anticoagulants/isolation & purification , Anticoagulants/pharmacology , Chondroitin Sulfate Proteoglycans/isolation & purification , Chondroitin Sulfate Proteoglycans/pharmacology , Chromatography, Affinity , Complement C1q/metabolism , Fibrin/metabolism , Fibrinopeptide A/metabolism , Fibrinopeptide B/metabolism , Humans , Kinetics , Protein Binding
18.
Blood ; 82(11): 3380-5, 1993 Dec 01.
Article in English | MEDLINE | ID: mdl-8241508

ABSTRACT

A 68-year-old man on chronic hemodialysis for 6 years, presented with a spontaneous psoas muscle hemorrhage. Investigations showed intermittently elevated activated partial-thromboplastin time and thrombin time. Preliminary investigations suggested a heparin-like inhibitor in the patient's plasma, but no anti-Xa activity could be detected. Investigation of the ability of patient plasma to inhibit exogenous thrombin showed that most thrombin was inhibited by heparin cofactor II, in contrast to normal plasma in which most thrombin was inhibited by antithrombin III. Treatment of plasma with glycosaminoglycan-degrading enzymes suggested the presence of dermatan sulfate (DS) in patient plasma. This was confirmed in a heparin cofactor II-dependent antithrombin assay for DS that showed anticoagulant equivalent to 2.2 +/- 0.3 micrograms/mL (mean +/- SD) of porcine mucosal DS. Of this activity, approximately 90% was sensitive to enzymes that degrade DS. The glycosaminoglycan containing fraction of plasma was isolated and subjected to gel chromatography. Anticoagulant activity eluted from Sephadex G-100 (Pharmacia, Montreal, Quebec, Canada) as two peaks with Kav of 0.10 and 0.45. After treatment with base, the Kav of the higher molecular weight species was increased to 0.55. This activity was completely sensitive to enzymes that degrade DS. Thus, the active DS was present as a proteoglycan. The lower molecular weight material was not sensitive to enzymes that degrade DS or heparan sulfate and it was active in the heparin cofactor II-dependent antithrombin assay but not in an antithrombin III-dependent antithrombin assay. This activity was not degraded by heating. Subsequently, measurement of DS activity was performed in plasmas obtained from eight other patients on hemodialysis before administration of heparin that showed that all patients had DS activity present that varied from 0.05 to 0.4 microgram/mL. No enzyme-resistant activity could be shown in these patients. In summary, a circulating anticoagulant with properties of DS is present in patients requiring hemodialysis.


Subject(s)
Chondroitin Sulfate Proteoglycans/blood , Dermatan Sulfate/blood , Renal Dialysis , Aged , Anticoagulants/blood , Chondroitin Sulfate Proteoglycans/physiology , Dermatan Sulfate/physiology , Hemostasis , Heparin/blood , Humans , Male , Molecular Weight , Thrombin/antagonists & inhibitors
19.
Blood ; 80(4): 1058-65, 1992 Aug 15.
Article in English | MEDLINE | ID: mdl-1498323

ABSTRACT

Mononuclear phagocytes synthesize chondroitin sulfate proteoglycan (CSPG), which is constitutively secreted. Because mononuclear phagocytes are known to interact with blood platelets, the effect of platelets on the release of CSPG in cultured human monocytes was investigated. After 6 days in vitro, the monocytes were supplied with fresh medium with different additions and subsequently exposed to [35S]sulfate for 24 hours before the medium fractions were harvested and analyzed for content of [35S]CSPG. Indirect evidence for the release of stimulatory factors from blood platelets was found when the addition of medium containing 50% serum made from platelet-rich plasma increased the expression of [35S]CSPG almost sevenfold compared with serum-free medium, whereas medium containing 50% serum made from platelet-depleted plasma increased the expression of [35S]CSPG about fourfold. Further, direct evidence for the stimulatory effect of platelets was found as the addition of autologous platelets to serum-free medium increased the expression of [35S]CSPG about threefold, and addition of supernatant from a corresponding number of thrombin-stimulated platelets was almost as efficient. The effect of five different platelet-derived factors (which are all present in serum) was investigated. Both platelet-derived growth factor (PDGF), platelet factor 4 (PF 4), and prostaglandin E2 (PGE2) used in physiologic concentrations were found to stimulate the expression of [35S]CSPG twofold to threefold, whereas transforming growth factor-beta had a slight inhibitory effect. 12-Hydroxyeicosatetraenoic acid had no significant effect on the expression of [35S]CSPG. Further evidence for the stimulatory effect of PDGF, PF 4, and PGE2 was found as serum depleted of these factors had significantly less stimulatory effect than control serum. The increased incorporation of [35S]sulfate into [35S]CSPG in cultures stimulated with serum or platelet-derived factors was not due to differences in molecular size or extent of sulfation of the proteoglycan molecules.


Subject(s)
Blood Platelets/physiology , Chondroitin Sulfate Proteoglycans/blood , Monocytes/metabolism , Aspirin/blood , Aspirin/pharmacology , Blood , Cells, Cultured , Culture Media , Dinoprostone/pharmacology , Humans , Platelet Factor 4/pharmacology , Platelet-Derived Growth Factor/pharmacology , Sulfates/blood , Thrombin/pharmacology
20.
Leuk Res ; 15(6): 515-23, 1991.
Article in English | MEDLINE | ID: mdl-1861534

ABSTRACT

The production of sulfated proteoglycans was compared in mature peripheral blood granulocytes and monocytes and HL-60 promyelocytic leukemia cells. We found that HL-60 cells synthesized 5-10 times more proteoglycans than peripheral blood leukocytes. Differentiation of HL-60 cells toward mature monocytes by treatment with 12-O-tetradecanoyl-phorbol-13-acetate (TPA) or towards granulocytes by treatment with retinoic acid or dibutyryl cyclic adenosine-3',5'-monophosphate (dbcAMP) resulted in a small (20-30%) decrease in sulfated proteoglycan biosynthesis. Chondroitin sulfate was found to be the predominant proteoglycan produced by monocytes, PMN and undifferentiated HL-60 cells. Differentiated HL-60 cells produced chondroitin sulfate as well as sulfated proteoglycans sensitive to nitrous acid degradation. Similar results were observed in TPA, dbcAMP and retinoic acid differentiated HL-60 cells indicating that the changes in proteoglycan biosynthesis observed were independent of the developmental pathway. Using specific monoclonal antibodies and flow cytometry, we also found that HL-60 cells and monocytes produced chondroitin-4-sulfate, chondroitin-6-sulfate and chondroitin-O-sulfate while PMN only produced chondroitin-4-sulfate. In addition, although there were no significant differences in antibody binding to undifferentiated and differentiated HL-60 cells, the tumor cells bound 5-20 times more of the antibodies than the peripheral blood leukocytes. Our data demonstrate that sulfated proteoglycan production by HL-60 cells is distinct from PMN and monocytes. In addition, the fact that differentiated HL-60 cells continue to synthesize larger amounts of the proteoglycans than the peripheral blood leukocytes indicates these cells have not completely matured.


Subject(s)
Chondroitin Sulfate Proteoglycans/biosynthesis , Granulocytes/metabolism , Leukemia, Experimental/metabolism , Leukemia, Myeloid/metabolism , Monocytes/metabolism , Cell Line, Transformed , Chondroitin Sulfate Proteoglycans/blood , Flow Cytometry , Humans , Leukemia, Experimental/pathology , Leukemia, Myeloid/pathology , Neutrophils/metabolism , Sulfur Radioisotopes , Tumor Cells, Cultured
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