Expected global suitability of coffee, cashew and avocado due to climate change.

Coffee, cashew and avocado are of high socio-economic importance in many tropical smallholder farming systems around the globe. As plantation crops with a long lifespan, their cultivation requires long-term planning. The evaluation of climate change impacts on their biophysical suitability is therefore essential for developing adaptation measures and selecting appropriate varieties or crops. In this study, we modelled the current and future suitability of coffee arabica, cashew and avocado on a global scale based on climatic and soil requirements of the three crops. We used climate outputs of 14 global circulation models based on three emission scenarios to model the future (2050) climate change impacts on the crops both globally and in the main producing countries. For all three crops, climatic factors, mainly long dry seasons, mean temperatures (high and low), low minimum temperatures and annual precipitation (high and low), were more restrictive for the global extent of suitable growing regions than land and soil parameters, which were primarily low soil pH, unfavourable soil texture and steep slopes. We found shifts in suitable growing regions due to climate change with both regions of future expansion and contraction for all crops investigated. Coffee proved to be most vulnerable, with negative climate impacts dominating in all main producing regions. For both cashew and avocado, areas suitable for cultivation are expected to expand globally while in most main producing countries, the areas of highest suitability may decrease. The study reveals that climate change adaptation will be necessary in most major producing regions of all three crops. At high latitudes and high altitudes, however, they may all profit from increasing minimum temperatures. The study presents the first global assessment of climate change impacts on cashew and avocado suitability.

Constitutive Defense Strategy of Coffee Under Field Conditions: A Comparative Assessment of Resistant and Susceptible Cultivars to Rust.

Coffea arabica is the most economically important coffee species worldwide. However, its production is severely limited by diseases such as rust. The mechanisms underlying constitutive defense responses in coffee are still poorly understood, compared with induced defense mechanisms. We aimed to characterize constitutive defense responses of thirteen cultivars of C. arabica. Cultivars were classified under field conditions according to the level of resistance to rust: resistant (R), moderately resistant (MR), and susceptible (S). Based on this classification, the stability of eight reference genes (RGs) was evaluated. The most stable RGs were EF1α, APT1, and 24S. We also evaluated the expression of CaWRKY1, CaPAL1, CaCAD1, and CaPOX1, and activities of PAL, CAD, and POX, which are involved in lignin biosynthesis, and leaf content of total phenolic compounds and lignin. Gene expression and enzymatic activity were not correlated with defense metabolites in the R cultivar group but showed a negative correlation with phenolic compounds in MR cultivars. Cultivar S showed positive correlations of gene expression and enzyme activity with phenolic compounds. These results may assist coffee breeding programs regarding selection of genotypes and in optimization of rust resistance.

Macrofauna del suelo y condiciones edafoclimáticas en un gradiente altitudinal de zonas cafeteras, Huila, Colombia / Soil macrofauna and edaphoclimatic conditions in an altitude gradient of coffee growing regions, Huila, Colombia

Introducción: La macrofauna del suelo cumple un rol clave en los procesos del suelo, por lo tanto, regula la oferta se servicios ecosistémicos; sin embargo, su nivel de actividad depende en gran parte de las condiciones edafoclimáticas. Objetivo: El presente trabajo evaluó el efecto del gradiente de altitud sobre comunidades de macrofauna del suelo y propiedades edafoclimáticas en zonas cafeteras del Norte del Huila. Métodos: El estudio incluyó 12 lotes de café separados en dos gradientes de altitud: bajo (1 300-1 600 m.s.n.m) y alto (1 600-1 900 m.s.n.m), se recolectó la macrofauna del suelo mediante monolitos (25 x 25 cm a 30 cm de profundidad) y se estudiaron las condiciones edafoclimáticas. Resultados: En total se registró 9 520 individuos m-2 y una riqueza específica de 14 táxones. Las condiciones edafoclimáticas con mayor diferencia estadística entre los gradientes de altitud, fue la temperatura ambiente y humedad relativa con diferencias de 4.9 °C y 10.4 %, respectivamente. Conclusiones: La mayor abundancia de Coleoptera, Hemiptera, Isoptera y Lepidoptera se presentó en sitios más cálidos, es decir a un gradiente de altitud entre 1 300-1 600 m.s.n.m, mientras que Chilopoda y Diplopoda se adaptaron mejor a sitios más fríos en el gradiente altitudinal entre 1 600-1 900 m.s.n.m.

Introduction: Soil macrofauna plays a key role in soil processes and therefore regulates the supply of ecosystem services; however, its level of activity depends largely of the edaphoclimatic conditions. Objective: This work evaluated the effect of altitude gradient on soil macrofauna communities and edafoclimatic properties in coffee zones of North Huila. Methods: The study included 12 coffee lots separated in two altitude gradients: low (1 300-1 600 masl) and high (1 600-1 900 masl). Soil macrofauna was collected by means of monoliths (25 x 25 cm with 30 cm depth) and edaphoclimatic conditions were studied. Results: A total of 9 520 individuals m-2 and a specific richness of 14 taxa were registered. The edaphoclimatic conditions with the greatest statistical difference between altitude gradients were the environmental temperature and relative humidity with differences of 4.9 °C and 10.4 %, respectively. Conclusions: The highest abundance of Coleoptera, Hemiptera, Isoptera, Lepidoptera was presented in warmer sites, that is, altitude gradient 1 300-1 600 masl, while Chilopoda and Diplopoda adapted better to colder sites in altitude gradient 1 600-1 900 m.a.s.l.

Coffee seedlings growth under varied NO3-:NH4+ ratio: Consequences for nitrogen metabolism, amino acids profile, and regulation of plasma membrane H+-ATPase.

Root plasma membrane H+-ATPase electrochemical equilibrium for optimum coffee plant growth can be modulated by specific ammonium:nitrate (NO3-:NH4+) ratio supply. This study aimed to evaluate the coffee seedlings responses to varying ammonium:nitrate (NO3-:NH4+) ratio and to depict how much NO3- and NH4+ plants can use in terms of growth, nitrogen metabolism, amino acids profile and regulation of root plasma membrane H+-ATPase. Coffee plants were grown in nutrient solution with the following NO3-:NH4+ ratios (%): 100:0; 87.5:12.5; 50:50; 0:100. Plants were grown in nutrient solution for 90 days and evaluated for growth, nitrate reductase activity as well as the modulation of H+-ATPase activity in the plasma membrane of the roots, amino acids profile, chlorophyll a fluorescence parameters and estimated cations and anions taken up by plants. The plants treated with the 87.5:12.5 and 50:50 NO3-:NH4+ ratio showed higher ability to absorb nutrients maintaining balanced uptake and as a consequence, 6% and 29%, the highest dry mass yield as compared to the 0:100 NO3-:NH4+ ratio. In addition, plants supplied with the 87.5:12.5 and 50:50 NO3-:NH4+ ratio had respectively, 58% and 94%, greater photosynthetic capability. Those data suggest that farmers and plant nurseries could implement the 50:50 NO3-:NH4+ ratio of nitrogen sources at coffee plantations and seedlings.

The dynamics of coffee production in Brazil.

Coffee is a crop of significant importance for Brazilian agrobusiness. There is evidence that both the geographic distribution of coffee production, and the varieties of coffee produced, have changed throughout Brazil over the course of time. Furthermore, it appears that these developments are associated with structural changes resulting from reductions in government intervention and its effects on prices in the coffee market, which has established a new dynamic of coffee production in the country. In this context, this study's objective is to analyze the dynamics of coffee production in Brazil, to identify the Brazilian micro-regions specializing in coffee activities, and to track how the spatial distribution of these micro-regions has varied over time. In so doing, the study aims to identify defining economic characteristics of primary coffee-producing regions. Drawing primarily on data from the Brazilian Institute of Geography and Statistics, the study proceeds by applying Pearson correlation, Granger causality test, location quotient, principal components, and clustering analyses to explore how, during the 1984-2015 period, significant changes occurred in the distribution of regions specializing in coffee production. States such as Paraná and São Paulo, historically important coffee producers, declined in importance, leaving only a few micro-regions in these states specialized in coffee production. During the 2014/15 biennium, 80% of the coffee-specialized micro-regions were concentrated in the states of Minas Gerais, Bahia, Rondônia, and Espírito Santo. Minas Gerais and Bahia primarily produced arabica coffee, while Rondônia specialized in conilon (robusta) coffee. Overall, coffee produced in Brazil improved in quality and value-added over this period.

Effect of gamma radiation as a post-harvest disinfestation treatment against life stages of the coffee berry borer, Hypothenemus hampei (Ferrari) (Coleoptera: Curculionidae).

Purpose: Gamma radiation is mainly used for disinfesting insect pests as an alternative for harmful fumigants. The specific dose of radiation is known to affect different developmental stages of insect pests. The study was conducted to determine the effective irradiation doses for inhibition of developmental stages and adult longevity of the coffee berry borer, Hypothenemus hampei (Ferrari). Materials and methods: Irradiation was carried with the following doses: five levels between 0.01 and 0.16 kGy for eggs, seven levels between 0.10 and 2.00 kGy for larva and prepupa, six levels between 0.10 and 1.60 kGy for pupa and ten levels between 0.10 and 3.20 kGy for adults. Results: Egg development was completely arrested at 0.160 kGy. A dose of 2.00 kGy caused 100% mortality in the first and second instar larva and 98.99% mortality in prepupa. The dose of 1.60 kGy prevented adult eclosion from the irradiated pupa. The adult mortality was 100% at 3.20 kGy. Conclusion: A dose of 3.20 kGy could successfully provide complete security from all developmental stages of H. hampei and prevent yield loss in green coffee as well as the spread of the pest.

Long-Term Coffee Monoculture Alters Soil Chemical Properties and Microbial Communities.

Long-term monoculture severely inhibits coffee plant growth, decreases its yield and results in serious economic losses in China. Here, we selected four replanted coffee fields with 4, 18, 26 and 57 years of monoculture history in Hainan China to investigate the influence of continuous cropping on soil chemical properties and microbial communities. Results showed long-term monoculture decreased soil pH and organic matter content and increased soil EC. Soil bacterial and fungal richness decreased with continuous coffee cropping. Principal coordinate analysis suggested monoculture time was a major determinant of bacterial and fungal community structures. Relative abundances of bacterial Proteobacteria, Bacteroidetes and Nitrospira and fungal Ascomycota phyla decreased over time. At genus level, potentially beneficial microbes such as Nitrospira and Trichoderma, significantly declined over time and showed positive relationships with coffee plant growth in pots. In conclusion, continuous coffee cropping decreased soil pH, organic matter content, potentially beneficial microbes and increased soil EC, which might lead to the poor growth of coffee plants in pots and decline of coffee yields in fields. Thus, developing sustainable agriculture to improve soil pH, organic matter content, microbial activity and reduce the salt stress under continuous cropping system is important for coffee production in China.

The Hawaii Protocol for Scientific Monitoring of Coffee Berry Borer: a Model for Coffee Agroecosystems Worldwide.

Coffee berry borer (CBB) is the most devastating insect pest for coffee crops worldwide. We developed a scientific monitoring protocol that is aimed at capturing and quantifying the dynamics and impact of this invasive insect pest as well as the development of its host plant across a heterogeneous landscape. The cornerstone of this comprehensive monitoring system is timely georeferenced data collection on CBB movement, coffee berry infestation, mortality by the fungus Beauveria bassiana, and coffee plant phenology via a mobile electronic data recording application. This electronic data collection system allows field records to be georeferenced through built-in global positioning systems, and is backed by a network of weather stations and records of farm management practices. Comprehensive monitoring of CBB and host plant dynamics is an essential part of an area-wide project in Hawaii to aggregate landscape-level data for research to improve management practices. Coffee agroecosystems in other parts of the world that experience highly variable environmental and socioeconomic factors will also benefit from implementing this protocol, in that it will drive the development of customized integrated pest management (IPM) to manage CBB populations.

Indicadores de qualidade do solo cultivado com café, pastagem e integração pastagem e eucalipto / Quality indicators of soil cultivated with coffee, pasture, and pasture and eucalyptus integration / Indicadores de calidad del suelo cultivado con café, pastaje e integración pastaje y eucalipto

A demanda crescente da utilização dos solos exige soluções que permitam incentivar o desenvolvimento socioeconômico sem comprometer a sustentabilidade dos recursos naturais. Desse modo, o objetivo deste estudo foi avaliar os efeitos de diferentes culturas como café, pastagem e manejo integrado de pastagem e eucalipto na qualidade química e microbiológica do solo. Foram analisados da parte química o pH do solo, nitrogênio, carbono orgânico total e fósforo do solo e da parte microbiológica foram analisados a densidade de esporos de fungos micorrizicos arbusculares (FMAs), carbono da biomassa microbiana (CBM), respiração basal do solo e coeficiente metabólico do solo qCO2. O pH do solo variou de 5,38 no manejo de pasto e eucalipto para 4,70 nas áreas cultivadas com pasto. A densidades de esporos de FMAs e o CBM na área de integração de pasto e eucalipto foram aumentados em relação à área cultivada com café, e o qCO2 foi aumentado com o cultivo do café, indicando que o cultivo de café eleva a condição de estresse do solo nas condições avaliadas. Concluindo, portanto, que as diferentes formas de uso e manejo das três áreas estudadas apontaram variações do comportamento de suas propriedades químicas e microbiológicas, entretanto, o manejo que se destacou foi a de eucalipto com a integração de pastagens, sendo mais sustentável.(AU)

The increasing demand for land use requires solutions that encourage its socio-economic development without compromising the sustainability of natural resources. The purpose of this study was to evaluate the effects of different crops such as coffee, pasture and the integrated management of pasture and eucalyptus in the chemical and microbiological quality of the soil. Chemical tests were performed to obtain the pH, nitrogen, total organic carbon, and phosphorus contents on the land, while microbiological parameters analyzed the density of arbuscular mycorrhizal fungi (AMF) spores, microbial biomass carbon (MBC), soil basal respiration (SBR) and soil metabolic coefficient qCO2. The soil pH varied from 5.38 in the management of pasture and eucalyptus to 4.70 in the areas cultivated with only pasture. The density of AMF spores and the MBC were higher in the pasture and eucalyptus integration when compared with coffee cultivation; the qCO2 in soil with coffee was higher than that found for the integration of pasture and eucalyptus. Those results indicate that coffee cultivated in those conditions increase stress in the soil due to higher SBR. It can be concluded that the different forms of use and management of the three studied areas show variations in the behavior of the chemical and microbiological properties in the soil, and eucalyptus with pasture integration presents a better sustainable soil management.(AU)

La demanda creciente de utilización del suelo exige soluciones que permitan incentivar el desarrollo socioeconómico sin comprometer la sustentabilidad de los recursos naturales. Así, el objetivo de ese estudio ha sido evaluar los efectos de diferentes culturas como café, pastaje y manejo integrado de pastaje y eucalipto en la calidad química y microbiológica del suelo. Se analizaron de la parte química, el pH del suelo, nitrógeno, carbono orgánico total y fosforo del suelo, y de la parte microbiológica se analizaron la densidad de esporos de fungos micorrizicos arbusculares (FMAs), carbono de la biomasa microbiana (CBM), respiración basal del suelo y coeficiente metabólico del suelo qCO2. El pH del suelo osciló de 5,38 en el manejo de pasto y eucalipto para 4,70 las áreas cultivadas con pasto. La densidad de esporos de FMAs y el CBM en el área de integración de pasto y eucalipto han aumentado en relación al área cultivada con café, y el qCO2 fue aumentado con el cultivo de café, indicando que el cultivo de café eleva la condición de estrés del suelo en las condiciones evaluadas. Concluyendo, por lo tanto, que las diferentes formas de uso y manejo de las tres áreas estudiadas, apuntaron variaciones de comportamiento de sus propiedades químicas y microbiológicas, entretanto el manejo que se destacó fue la del eucalipto con la integración de pastajes, siendo más sostenible.(AU)

Microbiological and faunal soil attributes of coffee cultivation under different management systems in Brazil.

Brazil is the biggest coffee producer in the world and different plantation management systems have been applied to improve sustainability and soil quality. Little is known about the environmental effects of these different management systems, therefore, the goal of this study was to use soil biological parameters as indicators of changes. Soils from plantations in Southeastern Brazil with conventional (CC), organic (OC) and integrated management systems containing intercropping of Brachiaria decumbens (IB) or Arachis pintoi (IA) were sampled. Total organic carbon (TOC), microbial biomass carbon (MBC) and nitrogen (MBN), microbial activity (C-CO2), metabolic quotient (qCO2), the enzymes dehydrogenase, urease, acid phosphatase and arylsulphatase, arbuscular mycorrhizal fungi (AMF) colonization and number of spores and soil fauna were evaluated. The greatest difference between the management systems was seen in soil organic matter content. The largest quantity of TOC was found in the OC, and the smallest was found in IA. TOC content influenced soil biological parameters. The use of all combined attributes was necessary to distinguish the four systems. Each management presented distinct faunal structure, and the data obtained with the trap method was more reliable than the TSBF (Tropical Soils) method. A canonic correlation analysis showed that Isopoda was correlated with TOC and the most abundant order with OC. Isoptera was the most abundant faunal order in IA and correlated with MBC. Overall, OC had higher values for most of the biological measurements and higher populations of Oligochaeta and Isopoda, corroborating with the concept that the OC is a more sustainable system.

Microbiological and faunal soil attributes of coffee cultivation under different management systems in Brazil / Atributos microbiológicos e da fauna do solo com diferentes sistemas de cultivo de cafeeiro no Brasil

Abstract Brazil is the biggest coffee producer in the world and different plantation management systems have been applied to improve sustainability and soil quality. Little is known about the environmental effects of these different management systems, therefore, the goal of this study was to use soil biological parameters as indicators of changes. Soils from plantations in Southeastern Brazil with conventional (CC), organic (OC) and integrated management systems containing intercropping of Brachiaria decumbens (IB) or Arachis pintoi (IA) were sampled. Total organic carbon (TOC), microbial biomass carbon (MBC) and nitrogen (MBN), microbial activity (C-CO2), metabolic quotient (qCO2), the enzymes dehydrogenase, urease, acid phosphatase and arylsulphatase, arbuscular mycorrhizal fungi (AMF) colonization and number of spores and soil fauna were evaluated. The greatest difference between the management systems was seen in soil organic matter content. The largest quantity of TOC was found in the OC, and the smallest was found in IA. TOC content influenced soil biological parameters. The use of all combined attributes was necessary to distinguish the four systems. Each management presented distinct faunal structure, and the data obtained with the trap method was more reliable than the TSBF (Tropical Soils) method. A canonic correlation analysis showed that Isopoda was correlated with TOC and the most abundant order with OC. Isoptera was the most abundant faunal order in IA and correlated with MBC. Overall, OC had higher values for most of the biological measurements and higher populations of Oligochaeta and Isopoda, corroborating with the concept that the OC is a more sustainable system.

Resumo O Brasil é o maior produtor mundial de café e diferentes sistemas de manejo têm sido aplicados para melhorar a sustentabilidade e a qualidade do solo. Pouco se conhece sobre os efeitos ambientais desses sistemas de manejo, assim, o objetivo desse estudo foi utilizar parâmetros biológicos do solo como indicadores de mudanças nos sistemas. Foram amostrados, na região sudeste do Brasil, solos com cultivo convencional (CC), orgânico (OC) e sistema integrado de cultivo consorciado com Brachiaria decumbens (IB) ou com Arachis pintoi (IA) na entrelinha. Foram avaliados o carbono orgânico total (TOC), carbono e nitrogênio da biomassa microbiana (MBC e MBN), atividade microbiana (C-CO2), quociente metabólico (qCO2), as enzimas desidrogenase, urease, fosfatase ácida e arilsulfatase, a colonização e número de esporos de fungos micorrízicos arbusculares (AMF) e a fauna do solo. A maior diferença entre os sistemas de manejo foram verificadas no teor de matéria orgânica do solo. O maior teor de TOC foi encontrado no OC, e o menor teor encontrado no sistema IA. O teor de TOC influenciou os parâmetros biológicos e a diferenciação da fauna do solo. O uso combinado de todos os atributos foi necessário para diferenciar os quatro sistemas de cultivo. Cada manejo apresentou estruturas diferentes de fauna, e dados obtidos com o método de armadilhas tipo pitfall foi mais confiável do que o método TSBF (Solos Tropicais). A análise de correlação canônica mostrou que Isopoda foi correlacionado com TOC e a ordem mais abundante em OC. Isoptera foi a ordem da fauna mais abundante em IA e foi correlacionada com MBC. Em geral, OC apresentou os maiores valores para a maioria dos atributos biológicos, inclusive para abundância de indivíduos de Oligochaeta e Isopoda, corroborando com o conceito de que OC é um sistema mais sustentável.

Recommendations for the regionalizing of coffee cultivation in Colombia: a methodological proposal based on agro-climatic indices.

The Colombian National Federation of Coffee Growers (FNC) conducted an agro-ecological zoning study based on climate, soil, and terrain of the Colombian coffee-growing regions (CCGR) located in the tropics, between 1° and 11.5° N, in areas of complex topography. To support this study, a climate baseline was constructed at a spatial resolution of 5 km. Twenty-one bioclimatic indicators were drawn from this baseline data and from yield data for different coffee genotypes evaluated under conditions at eight experimental stations (ESs) belonging to the National Center for Coffee Research (CENICAFÉ). Three topographic indicators were obtained from a digital elevation model (DEM). Zoning at a national level resulted in the differentiation of 12 agro-climatic zones. Altitude notably influenced zone differentiation, however other factors such as large air currents, low-pressure atmospheric systems, valleys of the great rivers, and physiography also played an important role. The strategy of zoning according to coffee-growing conditions will enable areas with the greatest potential for the development of coffee cultivation to be identified, criteria for future research to be generated, and the level of technology implementation to be assessed.

Effects of land use on bird populations and pest control services on coffee farms.

Global increases in both agriculture and biodiversity awareness raise a key question: Should cropland and biodiversity habitat be separated, or integrated in mixed land uses? Ecosystem services by wildlife make this question more complex. For example, birds benefit agriculture by preying on pest insects, but other habitat is needed to maintain the birds. Resulting land use questions include what areas and arrangements of habitat support sufficient birds to control pests, whether this pest control offsets the reduced cropland, and the comparative benefits of "land sharing" (i.e., mixed cropland and habitat) vs. "land sparing" (i.e., separate areas of intensive agriculture and habitat). Such questions are difficult to answer using field studies alone, so we use a simulation model of Jamaican coffee farms, where songbirds suppress the coffee berry borer (CBB). Simulated birds select habitat and prey in five habitat types: intact forest, trees (including forest fragments), shade coffee, sun coffee, and unsuitable habitat. The trees habitat type appears to be especially important, providing efficient foraging and roosting sites near coffee plots. Small areas of trees (but not forest alone) could support a sufficient number of birds to suppress CBB in sun coffee; the degree to which trees are dispersed within coffee had little effect. In simulations without trees, shade coffee supported sufficient birds to offset its lower yield. High areas of both trees and shade coffee reduced pest control because CBB was less often profitable prey. Because of the pest control service provided by birds, land sharing was predicted to be more beneficial than land sparing in this system.

Predictors of leafhopper abundance and richness in a coffee agroecosystem in Chiapas, Mexico.

Coffee agroecosystems with a vegetatively complex shade canopy contain high levels of biodiversity. However, as coffee management is intensified, diversity may be lost. Most biodiversity studies in coffee agroecosystems have examined predators and not herbivores, despite their importance as potential coffee pests and coffee disease vectors. We sampled one abundant herbivore group of leafhoppers on an organic coffee farm in Chiapas, Mexico. We sampled leafhoppers with elevated pan traps in high- and moderate-shade coffee during the dry and wet seasons of 2011. The two major objectives were to 1) compare leafhopper abundance and richness during the wet and dry seasons and 2) examine the correlations between habitat characteristics (e.g., vegetation, elevation, and presence of aggressive ants) and leafhopper richness and abundance. We collected 2,351 leafhoppers, representing eight tribes and 64 morphospecies. Leafhopper abundance was higher in the dry season than in the wet season. Likewise, leafhopper richness was higher in the dry season. Several vegetation and other habitat characteristics correlated with abundance and richness of leafhoppers. The number of Inga trees positively correlated with leafhopper abundance, and other significant correlates of abundance included vegetation complexity. Leafhopper richness was correlated with the number of Inga trees. As leafhoppers transmit important coffee diseases, understanding the specific habitat factors correlating with changes in abundance and richness may help predict future disease outbreaks.

An integrated framework for assessing vulnerability to climate change and developing adaptation strategies for coffee growing families in Mesoamerica.

The Mesoamerican region is considered to be one of the areas in the world most vulnerable to climate change. We developed a framework for quantifying the vulnerability of the livelihoods of coffee growers in Mesoamerica at regional and local levels and identify adaptation strategies. Following the Intergovernmental Panel on Climate Change (IPCC) concepts, vulnerability was defined as the combination of exposure, sensitivity and adaptive capacity. To quantify exposure, changes in the climatic suitability for coffee and other crops were predicted through niche modelling based on historical climate data and locations of coffee growing areas from Mexico, Guatemala, El Salvador and Nicaragua. Future climate projections were generated from 19 Global Circulation Models. Focus groups were used to identify nine indicators of sensitivity and eleven indicators of adaptive capacity, which were evaluated through semi-structured interviews with 558 coffee producers. Exposure, sensitivity and adaptive capacity were then condensed into an index of vulnerability, and adaptation strategies were identified in participatory workshops. Models predict that all target countries will experience a decrease in climatic suitability for growing Arabica coffee, with highest suitability loss for El Salvador and lowest loss for Mexico. High vulnerability resulted from loss in climatic suitability for coffee production and high sensitivity through variability of yields and out-migration of the work force. This was combined with low adaptation capacity as evidenced by poor post harvest infrastructure and in some cases poor access to credit and low levels of social organization. Nevertheless, the specific contributors to vulnerability varied strongly among countries, municipalities and families making general trends difficult to identify. Flexible strategies for adaption are therefore needed. Families need the support of government and institutions specialized in impacts of climate change and strengthening of farmer organizations to enable the adjustment of adaptation strategies to local needs and conditions.

Identification and expression analysis of ethylene biosynthesis and signaling genes provides insights into the early and late coffee cultivars ripening pathway.

The plant hormone ethylene is involved in the regulation of a multitude of plant processes, ranging from seed germination to organ senescence. Ethylene induces fruit ripening in climacteric fruits, such as coffee, being directly involved in fruit ripening time and synchronization. Coffee early cultivars usually show a more uniform ripening process although little is known about the genetic factors that promote the earliness of ripening. Thus, this work aimed to characterize the putative members of the coffee (Coffea arabica) ethylene biosynthesis and signaling pathways, as well as to analyze the expression patterns of these members during fruit ripening of early (Catucaí 785-15) and late (Acauã) coffee cultivars. Reverse Transcription-qPCR analysis of the four biosynthesis genes (CaACS1-like; CaACO1-like; CaACO4-like e CaACO5-like) analyzed in this study showed that CaACO1-like and CaACO4-like displayed an expression pattern typically observed in climacteric fruits, being up-regulated during ripening. CaACS1-like gene expression was also up-regulated during fruit ripening of both cultivars, although in a much lesser extent when compared to the changes in CaACO1-like and CaACO4-like gene expression. CaACO5-like was only induced in raisin fruit and may be related to senescence processes. On the other hand, members of the ethylene signaling pathway (CaETR1-like, CaETR4-like, CaCTR2-like, CaEIN2-like, CaEIN3-like, CaERF1) showed slightly higher expression levels during the initial stages of development (green and yellow-green fruits), except for the ethylene receptors CaETR1-like and CaETR4-like, which were constitutively expressed and induced in cherry fruits, respectively. The higher ethylene production levels in Catucaí 785-15 fruits, indicated by the expression analysis of CaACO1-like and CaACO4-like, suggest that it promotes an enhanced CaETR4-like degradation, leading to an increase in ethylene sensitivity and consequently to an earliness in the ripening process of this cultivar. Ethylene production in Acauã fruits may not be sufficient to inactivate the CaETR4-like levels and thus ripening changes occur in a slower pace. Thus, the expression analysis of the ethylene biosynthesis and signaling genes suggests that ethylene is directly involved in the determination of the ripening time of coffee fruits, and CaACO1-like, CaACO4-like and CaETR4-like may display essential roles during coffee fruit ripening.

Indirect effects of a fungal entomopathogen, Lecanicillium lecanii (Hypocreales: Clavicipitaceae), on a coffee agroecosystem ant community.

Fungal entomopathogens are widely distributed across natural and managed systems, with numerous host species and likely a wide range of community impacts. While the potential for fungal pathogens to provide biological control has been explored in some detail, less is known about their community interactions. Here we investigate the effects of fungal epizootics of the entomopathogen Lecanicillium lecanii (Zimmerman) on a keystone mutualism between Azteca instabilis (F. Smith), a dominant arboreal ant, and the green coffee scale (Coccus viridis Green), as well as broader impacts on a coffee agroecosystem ant community. We hypothesized that seasonal epizootics cause shifts in the foraging ranges of A. instabilis as the ants adapt to the loss of the resource. We further hypothesized that the magnitude of these shifts depends on the availability of alternate resources located in neighboring shade trees. To test these hypotheses, we induced an epizootic in experimental sites, which were compared with control sites. Surveys of ant activity were undertaken pre- and post-epizootic. We found a decrease in foraging activity of A. instabilis and increase in activity of other ant species in the experimental sites post-epizootic. The decrease in abundance of A. instabilis foragers was greater on plants in which an epizootic was induced than in other plants. This relationship was modified by shade tree density where higher shade tree density was associated with larger decreases in A. intabilis foraging activity in coffee plants. These results demonstrate the potential for fungal entomopathogens to influence the structure and diversity of ecological communities.