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1.
Mol Pharm ; 17(9): 3581-3588, 2020 09 08.
Article in English | MEDLINE | ID: mdl-32663011

ABSTRACT

The purpose of this study was to examine the melanoma targeting and imaging properties of 99mTc(CO)3-NOTA-GGNle-CycMSHhex {1,4,7-triazacyclononane-1,4,7-triyl-triacetic acid-GlyGlyNle-c[Asp-His-DPhe-Arg-Trp-Lys]-CONH2} and 99mTc(CO)3-NODAGA-GGNle-CycMSHhex {1,4,7-triazacyclononane,1-gluteric acid-4,7-acetic acid-GlyGlyNle-c[Asp-His-DPhe-Arg-Trp-Lys]-CONH2} on B16/F10 melanoma-bearing C57 mice to demonstrate the feasibility of NOTA/NODAGA as metal chelators for 99mTc(CO)3+ radiolabeling. NOTA/NODAGA-GGNle-CycMSHhex were synthesized using fluorenylmethoxycarbonyl (Fmoc) chemistry. The melanocortin-1 (MC1) receptor binding affinities of the peptides were determined on B16/F10 melanoma cells. The biodistribution of 99mTc(CO)3-NOTA-GGNle-CycMSHhex and 99mTc(CO)3-NODAGA-GGNle-CycMSHhex were determined on B16/F10 melanoma-bearing C57 mice at 2 h postinjection to select a lead peptide for further evaluation. The melanoma targeting and imaging properties of 99mTc(CO)3-NOTA-GGNle-CycMSHhex and 99mTc(CO)3-NODAGA-GGNle-CycMSHhex were determined on B16/F10 melanoma-bearing C57 mice. The IC50 values of NOTA/NODAGA-GGNle-CycMSHhex were 0.8 ± 0.1 and 0.9 ± 0.1 nM on B16/F10 cells. 99mTc(CO)3-NOTA-GGNle-CycMSHhex and 99mTc(CO)3-NODAGA-GGNle-CycMSHhex were readily prepared via the [99mTc(CO)3(OH2)3]+ intermediate and displayed MC1R-specific binding on B16/F10 cells. 99mTc(CO)3-NOTA-GGNle-CycMSHhex was further evaluated as a lead peptide because of its higher tumor uptake (19.76 ± 3.62% ID/g) and lower kidney uptake (1.59 ± 0.52% ID/g) at 2 h postinjection than 99mTc(CO)3-NODAGA-GGNle-CycMSHhex. The B16/F10 melanoma uptake of 99mTc(CO)3-NOTA-GGNle-CycMSHhex was 16.07 ± 4.47, 19.76 ± 3.62, 11.30 ± 2.81, and 3.16 ± 2.28% ID/g at 0.5, 2, 4, and 24 h postinjection, respectively. 99mTc(CO)3-NOTA-GGNle-CycMSHhex showed high tumor to normal organ uptake ratios after 2 h postinjection. The B16/F10 melanoma lesions were clearly visualized by SPECT/CT using 99mTc(CO)3-NOTA-GGNle-CycMSHhex as an imaging probe at 2 h postinjection. High tumor uptake, low kidney uptake, and fast urinary clearance of 99mTc(CO)3-NOTA-GGNle-CycMSHhex highlighted its potential for melanoma imaging and facilitated the evaluation of 188Re(CO)3-NOTA-GGNle-CycMSHhex for melanoma therapy.


Subject(s)
Heterocyclic Compounds, 1-Ring/chemistry , Kidney/metabolism , Lactams/chemistry , Melanoma, Experimental/metabolism , Technetium/chemistry , alpha-MSH/chemistry , alpha-MSH/genetics , Animals , Biological Transport/physiology , Cell Line, Tumor , Chelating Agents/chemistry , Chelating Agents/metabolism , Cyclization/drug effects , Melanoma, Experimental/drug therapy , Mice , Receptor, Melanocortin, Type 1/metabolism , Tissue Distribution/physiology , alpha-MSH/metabolism
2.
Biochemistry ; 59(28): 2585-2591, 2020 07 21.
Article in English | MEDLINE | ID: mdl-32551535

ABSTRACT

Amyloidogenic plaques are hallmarks of Alzheimer's disease (AD) and typically consist of high percentages of modified Aß peptides bearing N-terminally cyclized glutamate residues. The human zinc(II) enzyme glutaminyl cyclase (QC) was shown in vivo to catalyze the cyclization of N-terminal glutamates of Aß peptides in a pathophysiological side reaction establishing QC as a druggable target for therapeutic treatment of AD. Here, we report crystallographic snapshots of human QC catalysis acting on the neurohormone neurotensin that delineate the stereochemical course of catalysis and suggest that hydrazides could mimic the transition state of peptide cyclization and deamidation. This hypothesis is validated by a sparse-matrix inhibitor screening campaign that identifies hydrazides as the most potent metal-binding group compared to classic Zn binders. The structural basis of hydrazide inhibition is illuminated by X-ray structure analysis of human QC in complex with a hydrazide-bearing peptide inhibitor and reveals a pentacoordinated Zn complex. Our findings inform novel strategies in the design of potent and highly selective QC inhibitors by employing hydrazides as the metal-binding warhead.


Subject(s)
Alzheimer Disease/enzymology , Aminoacyltransferases/antagonists & inhibitors , Aminoacyltransferases/metabolism , Enzyme Inhibitors/chemistry , Hydrazines/chemistry , Alzheimer Disease/drug therapy , Alzheimer Disease/metabolism , Aminoacyltransferases/chemistry , Crystallography, X-Ray , Cyclization/drug effects , Enzyme Inhibitors/pharmacology , Humans , Hydrazines/pharmacology , Models, Molecular , Molecular Targeted Therapy , Neurotensin/metabolism , Protein Conformation/drug effects
3.
Mol Divers ; 24(4): 1025-1042, 2020 Nov.
Article in English | MEDLINE | ID: mdl-31713185

ABSTRACT

A series of benzopyrano[2,3-c]pyrazol-4(2H)-one derivatives were synthesized from readily available 1-phenyl- and 1-methyl-1H-pyrazol-3-ols by sequentially employing O-acylation, Fries rearrangement and potassium carbonate-induced cyclization. The anthelmintic properties of the obtained compounds were investigated in vivo in a model nematode, Caenorhabditis elegans. Five compounds, namely 2-phenyl[1]benzopyrano[2,3-c]pyrazol-4(2H)-one 33 and its 7-fluoro, 7-chloro-, 7-bromo- and 8-fluoro-analogues, 36, 38, 40 and 43, respectively, altered the development of C. elegans. While the activities of 33 and 43 were rather modest, compounds 36, 38 and 40 inhibited the growth of the worms at concentrations of approximately 1-3 µM. At these concentrations, the compounds did not kill the worms, but they strongly inhibited their development, with the majority of larvae never progressing past the L1 stage. Moreover, testing in non-cancer human cell lines showed that, with exception of 7-bromo derivative 40, the active compounds have favourable toxicity profiles.


Subject(s)
Anthelmintics/chemical synthesis , Anthelmintics/pharmacology , Pyrazoles/chemistry , Animals , Caenorhabditis elegans/drug effects , Cell Line , Cyclization/drug effects , Humans , Larva/drug effects , Structure-Activity Relationship
4.
Molecules ; 24(21)2019 Nov 05.
Article in English | MEDLINE | ID: mdl-31694215

ABSTRACT

Difficult-to-access 4-bromo quinolines are constructed directly from easily prepared ortho-propynol phenyl azides using TMSBr as acid-promoter. The cascade transformation performs smoothly to generate desired products in moderate to excellent yields with good functional groups compatibility. Notably, TMSBr not only acted as an acid-promoter to initiate the reaction, and also as a nucleophile. In addition, 4-bromo quinolines as key intermediates could further undergo the coupling reactions or nucleophilic reactions to provide a variety of functionalized compounds with molecular diversity at C4 position of quinolines.


Subject(s)
Azides/chemistry , Cyclization/drug effects , Quinolines/chemistry , Trimethylsilyl Compounds/chemistry , Acids/chemistry , Molecular Structure , Stereoisomerism
5.
Mar Drugs ; 17(6)2019 Jun 23.
Article in English | MEDLINE | ID: mdl-31234579

ABSTRACT

Arenicin-1, a ß-sheet antimicrobial peptide isolated from the marine polychaeta Arenicola marina coelomocytes, has a potent, broad-spectrum microbicidal activity and also shows significant toxicity towards mammalian cells. Several variants were rationally designed to elucidate the role of structural features such as cyclization, a certain symmetry of the residue arrangement, or the presence of specific residues in the sequence, in its membranolytic activity and the consequent effect on microbicidal efficacy and toxicity. The effect of variations on the structure was probed using molecular dynamics simulations, which indicated a significant stability of the ß-hairpin scaffold and showed that modifying residue symmetry and ß-strand arrangement affected both the twist and the kink present in the native structure. In vitro assays against a panel of Gram-negative and Gram-positive bacteria, including drug-resistant clinical isolates, showed that inversion of the residue arrangement improved the activity against Gram-negative strains but decreased it towards Gram-positive ones. Variants with increased symmetry were somewhat less active, whereas both backbone-cyclized and linear versions of the peptides, as well as variants with R→K and W→F replacement, showed antimicrobial activity comparable with that of the native peptide. All these variants permeabilized both the outer and the inner membranes of Escherichia coli, suggesting that a membranolytic mechanism of action was maintained. Our results indicate that the arenicin scaffold can support a considerable degree of variation while maintaining useful biological properties and can thus serve as a template for the elaboration of novel anti-infective agents.


Subject(s)
Antimicrobial Cationic Peptides/chemistry , Aquatic Organisms/chemistry , Polychaeta/chemistry , Amino Acid Sequence , Animals , Antimicrobial Cationic Peptides/pharmacology , Cyclization/drug effects , Escherichia coli/drug effects , Microbial Sensitivity Tests/methods
6.
J Pharm Sci ; 108(10): 3194-3200, 2019 10.
Article in English | MEDLINE | ID: mdl-31145921

ABSTRACT

Pyroglutamic acid (pyroGlu) is commonly observed at the N-terminus of therapeutic monoclonal antibodies. Notably, the term "pyroGlu" refers to a single product that could originate from the cyclization of either an N-terminal glutamine or an N-terminal glutamic acid. This is an important and easily overlooked distinction that has major implications on the charge variant nature of a pyroGlu relative to its uncyclized form. Cyclization of an N-terminal glutamine for instance clearly produces an acidic variant with a lower isoelectric point owing to the loss of the positively charged N-terminal amine. In this report, we demonstrate that cyclization of an N-terminal glutamic acid on the other hand produces a basic variant with a higher isoelectric point contrary to the typical assumption that the simultaneous loss of the N-terminal amine and the carboxylic acid side-chain would negate the formation of a charge variant. The results of our investigation demonstrate the need to consider the relative strengths of the acidic and basic functional groups which are altered when assessing whether the product will be a charge variant. This study also adds new knowledge and experimental evidence to understand charge heterogeneity in monoclonal antibodies.


Subject(s)
Antibodies, Monoclonal/chemistry , Cyclization/drug effects , Glutamic Acid/chemistry , Pyrrolidonecarboxylic Acid/chemistry , Glutamine/chemistry
7.
Commun Biol ; 2: 166, 2019.
Article in English | MEDLINE | ID: mdl-31069275

ABSTRACT

Atovaquone-proguanil (Malarone®) is used for malaria prophylaxis and treatment. While the cytochrome bc1-inhibitor atovaquone has potent activity, proguanil's action is attributed to its cyclization-metabolite, cycloguanil. Evidence suggests that proguanil has limited intrinsic activity, associated with mitochondrial-function. Here we demonstrate that proguanil, and cyclization-blocked analogue tBuPG, have potent, but slow-acting, in vitro anti-plasmodial activity. Activity is folate-metabolism and isoprenoid biosynthesis-independent. In yeast dihydroorotate dehydrogenase-expressing parasites, proguanil and tBuPG slow-action remains, while bc1-inhibitor activity switches from comparatively fast to slow-acting. Like proguanil, tBuPG has activity against P. berghei liver-stage parasites. Both analogues act synergistically with bc1-inhibitors against blood-stages in vitro, however cycloguanil antagonizes activity. Together, these data suggest that proguanil is a potent slow-acting anti-plasmodial agent, that bc1 is essential to parasite survival independent of dihydroorotate dehydrogenase-activity, that Malarone® is a triple-drug combination that includes antagonistic partners and that a cyclization-blocked proguanil may be a superior combination partner for bc1-inhibitors in vivo.


Subject(s)
Antimalarials/pharmacology , Atovaquone/pharmacology , Enzyme Inhibitors/pharmacology , Plasmodium berghei/drug effects , Plasmodium falciparum/drug effects , Proguanil/analogs & derivatives , Animals , Anopheles , Antimalarials/chemistry , Atovaquone/chemistry , Cyclization/drug effects , Dihydroorotate Dehydrogenase , Dose-Response Relationship, Drug , Drug Combinations , Electron Transport Complex III/antagonists & inhibitors , Electron Transport Complex III/metabolism , Enzyme Inhibitors/chemistry , Erythrocytes/drug effects , Erythrocytes/parasitology , Folic Acid/metabolism , Hep G2 Cells , Humans , Inhibitory Concentration 50 , Liver/drug effects , Liver/parasitology , Oxidoreductases Acting on CH-CH Group Donors/metabolism , Plasmodium berghei/growth & development , Plasmodium berghei/metabolism , Plasmodium falciparum/growth & development , Plasmodium falciparum/metabolism , Proguanil/chemistry , Proguanil/pharmacology , Sporozoites/drug effects , Sporozoites/growth & development , Sporozoites/metabolism , Terpenes/metabolism , Triazines/chemistry , Triazines/pharmacology
8.
Org Biomol Chem ; 16(13): 2210-2213, 2018 03 28.
Article in English | MEDLINE | ID: mdl-29512670

ABSTRACT

Enzymes with a hydrophobic binding site and an active site lysine have been suggested to be promiscuous in their catalytic activity. ß-Lactoglobulin (BLG), the principle whey protein found in milk, possesses a central calyx that binds non-polar molecules. Here, we report that BLG can catalyze the retro-aldol cleavage of α,ß-unsaturated aldehydes making it a naturally occurring protein capable of catalyzing retro-aldol reactions on hydrophobic substrates. Retroaldolase activity was seen to be most effective on substrates with phenyl or naphthyl side-chains. Use of a brominated substrate analogue inhibitor increases the product yield by a factor of three. BLG's catalytic activity and its ready availability make it a prime candidate for the development of commercial biocatalysts.


Subject(s)
Aldehydes/chemistry , Alkenes/chemistry , Carbon-Carbon Lyases/chemistry , Lactoglobulins/chemistry , Animals , Biocatalysis , Carbon-Carbon Lyases/antagonists & inhibitors , Cattle , Cyclization/drug effects , Enzyme Inhibitors/chemistry , Hydrophobic and Hydrophilic Interactions , Lactoglobulins/antagonists & inhibitors , Lysine/chemistry , Multifunctional Enzymes/antagonists & inhibitors , Multifunctional Enzymes/chemistry
9.
J Nat Prod ; 81(3): 534-542, 2018 03 23.
Article in English | MEDLINE | ID: mdl-29400964

ABSTRACT

The human 20S proteasome inhibitor scytonemide A (1), a macrocyclic imine originally isolated from the cyanobacterium Scytonema hofmanni, was synthesized via a biomimetic solid-phase peptide synthesis (SPPS) approach employing the Weinreb AM resin. Utilizing this approach, cyclization of the protected heptapeptide via formation of the imine bond occurred spontaneously upon cleavage from the resin in the presence of a reducing agent and subsequent aqueous workup. The final deprotection step necessary to produce the natural product was accomplished under slightly basic conditions, facilitating cleavage of the silyl ether group while leaving the macrocycle intact. Purification of the synthetic scytonemide A was accomplished via normal-phase flash column chromatography, potentially facilitating larger scale preparation of the compound necessary for future mechanistic and SAR studies. The structure of the target compound was confirmed by NMR spectroscopy, which also shed light on differences in the spectroscopic data obtained for the synthetic and natural scytonemide A samples for some of the amide and alcohol signals in the 1H NMR spectrum.


Subject(s)
Depsipeptides/chemistry , Resins, Plant/chemistry , Amides/chemistry , Cyclization/drug effects , Humans , Proteasome Inhibitors/chemistry , Solid-Phase Synthesis Techniques/methods
10.
Drug Metab Dispos ; 46(3): 303-315, 2018 03.
Article in English | MEDLINE | ID: mdl-29311137

ABSTRACT

AZD7325 [4-amino-8-(2-fluoro-6-methoxyphenyl)-N-propylcinnoline-3-carboxamide] is a selective GABAAα2,3 receptor modulator intended for the treatment of anxiety disorders through oral administration. An interesting metabolic cyclization and aromatization pathway led to the tricyclic core of M9, i.e., 2-ethyl-7-(2-fluoro-6-methoxyphenyl)pyrimido[5,4-c]cinnolin-4(3H)-one. Further oxidative metabolism generated M10 via O-demethylation and M42 via hydroxylation. An authentic standard of M9 was synthesized to confirm the novel structure of M9 and that of M10 and M42 by liver microsomal incubation of the M9 standard. Metabolites M9, M10, and M42 were either minor or absent in plasma samples after a single dose; however, all became major metabolites in human and preclinical animal plasma after repeated doses and circulated in humans longer than 48 hours after the end of seven repeated doses. The absence of these long circulating metabolites from selected patients' plasma samples was used to demonstrate patient noncompliance as the cause of unexpected lack of drug exposure in some patients during a Phase IIb outpatient clinical study. The observation of late-occurring and long-circulating metabolites demonstrates the need to collect plasma samples at steady state after repeated doses when conducting metabolite analysis for the safety testing of drug metabolites. All 12 major nonconjugate metabolites of AZD7325 observed in human plasma at steady state were also observed in dog, rat, and mouse plasma samples collected from 3-month safety studies and at higher exposures in the animals than humans. This eliminated concern about human specific or disproportional metabolites.


Subject(s)
Cyclization/drug effects , Heterocyclic Compounds, 2-Ring/metabolism , Receptors, GABA-A/metabolism , Adolescent , Adult , Aged , Animals , Dogs , Double-Blind Method , Female , Humans , Hydroxylation/drug effects , Male , Mice , Microsomes, Liver/metabolism , Middle Aged , Patient Compliance , Rats , Rats, Wistar , Young Adult
11.
Nucleic Acids Res ; 45(15): e139, 2017 Sep 06.
Article in English | MEDLINE | ID: mdl-28655200

ABSTRACT

Preparation of large amount of single-stranded circular DNA in high selectivity is crucial for further developments of nanotechnology and other DNA sciences. Herein, a simple but practically useful methodology to prepare DNA rings has been presented. One of the essential factors is to use highly diluted T4 ligase buffer for ligase reactions. This strategy is based on our unexpected finding that, in diluted T4 buffers, intermolecular polymerization of DNA fragments is greatly suppressed with respect to their intramolecular cyclization. This promotion of cyclization is attributable to abnormally low concentration of Mg2+ ion (0.5-1.0 mM) but not ATP in the media for T4 ligase reactions. The second essential factor is to add DNA substrate intermittently to the mixture and maintain its temporal concentration low. By combining these two factors, single-stranded DNA rings of various sizes (31-74 nt) were obtained in high selectivity (89 mol% for 66-nt DNA) and in satisfactorily high productivity (∼0.2 mg/ml). A linear 72-nt DNA was converted to the corresponding DNA ring in nearly 100% selectivity. The superiority of this new method was further substantiated by the fact that small-sized DNA rings (31-42 nt), which were otherwise hardly obtainable, were successfully prepared in reasonable yields.


Subject(s)
DNA Ligases/metabolism , DNA, Circular/metabolism , DNA, Single-Stranded/metabolism , Magnesium/pharmacology , Base Sequence , Cloning, Molecular/methods , Cyclization/drug effects , DNA, Circular/drug effects , DNA, Single-Stranded/drug effects , In Vitro Techniques , Osmolar Concentration , Polymerization/drug effects
12.
Biochemistry ; 56(9): 1239-1247, 2017 03 07.
Article in English | MEDLINE | ID: mdl-28218515

ABSTRACT

The activity of glycopeptide antibiotics (GPAs) depends upon important structural modifications to their precursor heptapeptide backbone: specifically, the cytochrome P450-catalyzed oxidative cross-linking of aromatic side chains as well as the halogenation of specific residues within the peptide. The timing of halogenation and its effect on the cyclization of the peptide are currently unclear. Our results show that chlorination of peptide precursors improves their processing by P450 enzymes in vitro, which provides support for GPA halogenation occurring prior to peptide cyclization during nonribosomal peptide synthesis. We could also determine that the activity of the second enzyme in the oxidative cyclization cascade, OxyA, remains higher for chlorinated peptide substrates even when the biosynthetic GPA product possesses an altered chlorination pattern, which supports the role of the chlorine atoms in orienting the peptide substrate in the active site of these enzymes.


Subject(s)
Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , Biocatalysis/drug effects , Cytochrome P-450 Enzyme System/metabolism , Glycopeptides/chemistry , Glycopeptides/pharmacology , Halogenation , Catalytic Domain , Cyclization/drug effects , Cytochrome P-450 Enzyme System/chemistry , Oxidation-Reduction
13.
J Am Chem Soc ; 138(7): 2098-101, 2016 Feb 24.
Article in English | MEDLINE | ID: mdl-26859098

ABSTRACT

As a rich source of therapeutic agents, peptide natural products usually adopt a cyclic or multicyclic scaffold that minimizes structural flexibility to favor target binding. Inspired by nature, chemists have been interested in developing synthetic cyclic and multicyclic peptides that serve as biological probes and potential therapeutics. Herein we describe a novel strategy for peptide cyclization in which intramolecular iminoboronate formation allows spontaneous cyclization under physiologic conditions to yield monocyclic and bicyclic peptides. Importantly the iminoboronate-based cyclization can be rapidly reversed in response to multiple stimuli, including pH, oxidation, and small molecules. This highly versatile strategy for peptide cyclization should find applications in many areas of chemical biology.


Subject(s)
Boronic Acids/chemistry , Peptides, Cyclic/chemical synthesis , Small Molecule Libraries/chemistry , Cyclization/drug effects , Hydrogen-Ion Concentration , Molecular Structure , Oxidation-Reduction , Peptides, Cyclic/chemistry , Small Molecule Libraries/pharmacology , Thermodynamics
14.
Molecules ; 19(5): 6058-69, 2014 May 13.
Article in English | MEDLINE | ID: mdl-24828378

ABSTRACT

The compounds [3-(2-Bromocyclohex-2-enyloxy)prop-1-ynyl]-tert-butyl-dimethylsilane 3, [4-(2-bromocyclohex-2-en-1-yloxy)but-2-yn-1-yloxy]tert-butyldimethylsilane 5 and dimethyl 2-(2-bromocyclohex-2-enyl)-2-(3-(tert-butyldimethylsilanyl)prop-2-ynyl)malonate 9 were prepared and subjected to palladium-catalyzed intra-intermolecular cascade cross couplings incorporating bicyclopropylidene 10 under two types of conditions. In the presence of Pd(OAc)2, PPh3 and K2CO3 in acetonitrile at 80 °C, the products were indene analogues, cross-conjugated tetraenes 11, 12 and 13, respectively. The corresponding spirocyclopropanated tricycle 16 in dimethylformamide at 110 °C was obtained, albeit in low yield (24%), and observed as an equimolar mixture of diastereomers, whereas 14, 15 were not fully isolated.


Subject(s)
Cyclization , Cyclohexanones/chemistry , Palladium/chemistry , Catalysis , Cyclization/drug effects , Cyclohexanones/chemical synthesis , Molecular Structure , Silanes/chemistry , Stereoisomerism
15.
Bioorg Med Chem Lett ; 23(3): 797-801, 2013 Feb 01.
Article in English | MEDLINE | ID: mdl-23290454

ABSTRACT

The synthesis of some biologically interesting pyrrolo-isoxazolidine derivatives was accomplished by the 1,3-dipolar cycloaddition reaction of substituted azomethine N-oxides 1 with substituted N-aryl maleimides 2 leading to the formation of new stereoisomeric 2,3,5-triaryl-4H,2,3,3a,5,6,6a-hexahydropyrrolo[3,4-d]isoxazole-4,6-dione derivatives 3 in excellent yields. The synthesized compounds have been screened for their advanced glycation end (AGE) product formation inhibitory activity on the basis of their ability to inhibit the formation of AGEs in the bovine serum albumin (BSA)-glucose assay. All the synthesized compounds have been found to exhibit significant activity against AGE formation.


Subject(s)
Glycation End Products, Advanced/antagonists & inhibitors , Isoxazoles/chemical synthesis , Ketones/chemical synthesis , Azo Compounds/chemistry , Biological Assay , Cyclization/drug effects , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Isoxazoles/chemistry , Isoxazoles/pharmacology , Ketones/chemistry , Ketones/pharmacology , Molecular Structure , Serum Albumin, Bovine , Stereoisomerism , Thiosemicarbazones/chemistry
16.
Carbohydr Polym ; 90(2): 1182-6, 2012 Oct 01.
Article in English | MEDLINE | ID: mdl-22840056

ABSTRACT

A short synthesis of chemoselective chitosan derivatives was achieved by copper-catalyzed Huisgen cycloaddition, which is an ideal reaction for click chemistry, by using N-(4-azidophthaloyl)-chitosan. N-(4-azidophthaloyl)-chitosan was prepared through chemoselective N-bromophthaloylation of chitosan in acidic water and subsequent azidation. The obtained N-(4-bromopthaloyl)-chitosan had higher solubility in common solvents than conventional phthaloyl chitosan. N-(4-azidophthaloyl)-chitosan was successfully converted with ethynyl derivatives having functional groups (hydroxymethyl, phenyl, and methyl ester) in the presence of copper(II) sulfate, sodium ascorbate and/or trimethylamine. FT-IR spectra, elemental analyses, and (1)H and (13)C NMR spectra supported that the desired chitosan derivatives were chemoselectively transferred by these groups with a 1,4-triazole linker.


Subject(s)
Chitosan/chemistry , Chitosan/chemical synthesis , Click Chemistry/methods , Catalysis/drug effects , Chitin/analogs & derivatives , Chitin/chemistry , Chitosan/analogs & derivatives , Copper/pharmacology , Cyclization/drug effects , Models, Biological , Phthalic Acids/chemistry , Solubility , Spectroscopy, Fourier Transform Infrared , Substrate Specificity
17.
Appl Biochem Biotechnol ; 167(7): 2039-53, 2012 Aug.
Article in English | MEDLINE | ID: mdl-22653681

ABSTRACT

An intein-driven protein splicing approach allowed for the covalent linkage between the N- and C-termini of a polypeptide chain to create circular variants of the endo-ß-1,3-1,4-glucanase, LicA, from Bacillus licheniformis. Two circular variants, LicA-C1 and LicA-C2, which have connecting loops of 20 and 14 amino acids, respectively, showed catalytic activities that are approximately two and three times higher, respectively, compared to that of the linear LicA (LicA-L1). The thermal stability of the circular variants was significantly increased compared to the linear form. Whereas the linear glucanase lost half of its activity after 3 min at 65 °C, the two circular variants have 6-fold (LicA-C1) and 16-fold (LicA-C2) increased half-life time of inactivation. In agreement with this, fluorescence spectroscopy and differential scanning calorimetry studies revealed that circular enzymes undergo structural changes at higher temperatures compared to that of the linear form. The effect of calcium on the conformational stability and function of the circular LicAs was also investigated, and we observed that the presence of calcium ions results in increased thermal stability. The impact of the length of the designed loops on thermal stability of the circular proteins is discussed, and it is suggested that cyclization may be an efficient strategy for the increased stability of proteins.


Subject(s)
Bacillus/enzymology , Cellulase/metabolism , Temperature , Amino Acid Sequence , Bioengineering , Calcium/pharmacology , Cellulase/chemistry , Cellulase/isolation & purification , Cyclization/drug effects , Electrophoresis, Polyacrylamide Gel , Enzyme Activation/drug effects , Enzyme Assays , Enzyme Stability/drug effects , Inteins , Molecular Sequence Data , Protein Structure, Secondary , Protein Unfolding/drug effects , Spectrometry, Fluorescence
18.
Bioorg Med Chem Lett ; 21(12): 3704-7, 2011 Jun 15.
Article in English | MEDLINE | ID: mdl-21612922

ABSTRACT

A series of 2-amino-4,5,6,7,8,9-hexahydrocycloocta[b]thiophenes were prepared and evaluated as potential allosteric modulators of the A(1) adenosine receptor (AR). The structure-activity relationships of the 3-position were explored along with varying the size of the cycloalkyl ring. 2-Aminothiophenes with amide and hydrazide groups in the 3-position were completely inactive in an A(1)-AR-mediated ERK1/2 phosphorylation assay, yet most of the 3-benzoyl substituted compounds exhibited allosteric effects on responses mediated by the orthosteric agonist, R-PIA. Despite finding an increase in both agonistic and allosteric activities by going from a cyclopentyl ring to a cyclohexyl ring in the 3-benzoyl series, decreases were observed when further increasing the ring size. Varying the substituents on the phenyl ring of the 3-benzoyl group also affected the activity of these compounds.


Subject(s)
Receptor, Adenosine A1/metabolism , Thiophenes/chemical synthesis , Thiophenes/pharmacology , Allosteric Regulation/drug effects , Amines/chemical synthesis , Amines/chemistry , Amines/pharmacology , Animals , CHO Cells , Cells, Cultured , Cricetinae , Cricetulus , Cyclization/drug effects , Inhibitory Concentration 50 , Molecular Structure , Structure-Activity Relationship , Thiophenes/chemistry
19.
Nature ; 464(7287): 441-4, 2010 Mar 18.
Article in English | MEDLINE | ID: mdl-20154731

ABSTRACT

The in vivo, genetically programmed incorporation of designer amino acids allows the properties of proteins to be tailored with molecular precision. The Methanococcus jannaschii tyrosyl-transfer-RNA synthetase-tRNA(CUA) (MjTyrRS-tRNA(CUA)) and the Methanosarcina barkeri pyrrolysyl-tRNA synthetase-tRNA(CUA) (MbPylRS-tRNA(CUA)) orthogonal pairs have been evolved to incorporate a range of unnatural amino acids in response to the amber codon in Escherichia coli. However, the potential of synthetic genetic code expansion is generally limited to the low efficiency incorporation of a single type of unnatural amino acid at a time, because every triplet codon in the universal genetic code is used in encoding the synthesis of the proteome. To encode efficiently many distinct unnatural amino acids into proteins we require blank codons and mutually orthogonal aminoacyl-tRNA synthetase-tRNA pairs that recognize unnatural amino acids and decode the new codons. Here we synthetically evolve an orthogonal ribosome (ribo-Q1) that efficiently decodes a series of quadruplet codons and the amber codon, providing several blank codons on an orthogonal messenger RNA, which it specifically translates. By creating mutually orthogonal aminoacyl-tRNA synthetase-tRNA pairs and combining them with ribo-Q1 we direct the incorporation of distinct unnatural amino acids in response to two of the new blank codons on the orthogonal mRNA. Using this code, we genetically direct the formation of a specific, redox-insensitive, nanoscale protein cross-link by the bio-orthogonal cycloaddition of encoded azide- and alkyne-containing amino acids. Because the synthetase-tRNA pairs used have been evolved to incorporate numerous unnatural amino acids, it will be possible to encode more than 200 unnatural amino acid combinations using this approach. As ribo-Q1 independently decodes a series of quadruplet codons, this work provides foundational technologies for the encoded synthesis and synthetic evolution of unnatural polymers in cells.


Subject(s)
Amino Acids/metabolism , Codon/genetics , Directed Molecular Evolution , Genetic Code , Genetic Engineering/methods , Protein Biosynthesis , Ribosomes/metabolism , Alkynes/metabolism , Amino Acids/genetics , Amino Acyl-tRNA Synthetases/genetics , Amino Acyl-tRNA Synthetases/metabolism , Azides/metabolism , Biocatalysis/drug effects , Calmodulin/chemistry , Calmodulin/genetics , Calmodulin/metabolism , Copper/metabolism , Copper/pharmacology , Cyclization/drug effects , Genetic Code/genetics , Methanococcus , Models, Molecular , Protein Biosynthesis/genetics , Protein Biosynthesis/physiology , Protein Conformation , Protein Engineering/methods , RNA, Messenger/genetics , RNA, Messenger/metabolism , RNA, Transfer/genetics , RNA, Transfer/metabolism , Ribosomes/chemistry
20.
Biomaterials ; 31(9): 2637-45, 2010 Mar.
Article in English | MEDLINE | ID: mdl-20074794

ABSTRACT

Polymers bearing pendant carbohydrates have a variety of biomedical applications especially in the area of targeted drug delivery. Here we report the synthesis of a family of amphiphilic block glycopolymers containing d glucose, d galactose and d mannose via metal-free organocatalyzed ring-opening polymerization of functional cyclic carbonates generating narrowly dispersed products of controlled molecular weight and end-group fidelity, and their application in drug delivery. These glycopolymers self-assemble into micelles having a high density of sugar molecules in the shell, a size less than 100 nm with narrow size distribution even after drug loading, and little cytotoxicity, which are important for drug delivery. Using galactose-containing micelles as an example, we demonstrate their strong targeting ability towards ASGP-R positive HepG2 liver cancer cells in comparison with ASGP-R negative HEK293 cells although the galactose is attached to the carbonate monomer at 6-position. The enhanced uptake of DOX-loaded galactose-containing micelles by HepG2 cells significantly increases cytotoxicity of DOX as compared to HEK293. This new family of amphiphilic block glycopolymers has great potential as carriers for targeted drug delivery.


Subject(s)
Carbohydrates/chemical synthesis , Drug Delivery Systems , Polycarboxylate Cement/chemistry , Polymers/chemical synthesis , Asialoglycoproteins/pharmacology , Carbohydrates/chemistry , Cell Death/drug effects , Cell Line , Cell Survival/drug effects , Cyclization/drug effects , Doxorubicin/metabolism , Doxorubicin/pharmacology , Fetuins , Fluorescence , Galactose/chemistry , Glucose/chemistry , Humans , Hydrogen-Ion Concentration/drug effects , Micelles , Microscopy, Electron, Transmission , Particle Size , Polymers/chemistry , Temperature , alpha-Fetoproteins/pharmacology
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