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1.
J Biol Chem ; 299(8): 104945, 2023 08.
Article in English | MEDLINE | ID: mdl-37348560

ABSTRACT

Human Flower (hFWE) isoforms hFWE1-4 are putative transmembrane (TM) proteins that reportedly mediate fitness comparisons during cell competition through extracellular display of their C-terminal tails. Isoform topology, subcellular localization, and duration of plasma membrane presentation are essential to this function. However, disagreement persists regarding the structure of orthologous fly and mouse FWEs, and experimental evidence for hFWE isoform subcellular localization or membrane structure is lacking. Here, we used AlphaFold2 and subsequent molecular dynamics-based structural predictions to construct epitope-tagged hFWE3 and hFWE4, the most abundant human isoforms, for experimental determination of their structure and internalization dynamics. We demonstrate that hFWE3 resides in the membrane of the endoplasmic reticulum (ER), while hFWE4 partially colocalizes with Rab4-, Rab5-, and Rab11-positive vesicles as well as with the plasma membrane. An array of imaging techniques revealed that hFWE4 positions both N- and C-terminal tails and a loop between second and third TM segments within the cytosol, while small (4-12aa) loops between the first and second and the third and fourth TM segments are either exposed to the extracellular space or within the lumen of cytoplasmic vesicles. Similarly, we found hFWE3 positions both N- and C-terminal tails in the cytosol, while a short loop between TM domains extends into the ER lumen. Finally, we demonstrate that hFWE4 exists only transiently at the cell surface and is rapidly internalized in an AP-2- and dynamin-1-dependent manner. Collectively, these data are consistent with a conserved role for hFWE4 in endocytic processes.


Subject(s)
Endoplasmic Reticulum , Models, Molecular , Humans , Cell Membrane/metabolism , Cell Membrane/ultrastructure , Endocytosis , Endoplasmic Reticulum/metabolism , Membrane Proteins/metabolism , Membrane Proteins/ultrastructure , Protein Isoforms/genetics , Protein Isoforms/metabolism , Protein Isoforms/ultrastructure , Cytoplasmic Vesicles/metabolism , Cytoplasmic Vesicles/ultrastructure , Molecular Dynamics Simulation , Protein Structure, Tertiary , Clathrin/metabolism , HEK293 Cells
2.
J Cell Biol ; 220(12)2021 12 06.
Article in English | MEDLINE | ID: mdl-34714326

ABSTRACT

Mechanisms that turn over components of the nucleus and inner nuclear membrane (INM) remain to be fully defined. We explore how components of the INM are selected by a cytosolic autophagy apparatus through a transmembrane nuclear envelope-localized cargo adaptor, Atg39. A split-GFP reporter showed that Atg39 localizes to the outer nuclear membrane (ONM) and thus targets the INM across the nuclear envelope lumen. Consistent with this, sequence elements that confer both nuclear envelope localization and a membrane remodeling activity are mapped to the Atg39 lumenal domain; these lumenal motifs are required for the autophagy-mediated degradation of integral INM proteins. Interestingly, correlative light and electron microscopy shows that the overexpression of Atg39 leads to the expansion of the ONM and the enclosure of a network of INM-derived vesicles in the nuclear envelope lumen. Thus, we propose an outside-in model of nucleophagy where INM is delivered into vesicles in the nuclear envelope lumen, which can be targeted by the autophagosome.


Subject(s)
Autophagosomes/metabolism , Autophagy-Related Proteins/metabolism , Cytoplasmic Vesicles/metabolism , Nuclear Envelope/metabolism , Receptors, Cytoplasmic and Nuclear/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Autophagosomes/ultrastructure , Autophagy , Autophagy-Related Proteins/chemistry , Cytoplasmic Vesicles/ultrastructure , Green Fluorescent Proteins/metabolism , Nuclear Envelope/ultrastructure , Protein Domains , Receptors, Cytoplasmic and Nuclear/chemistry , Saccharomyces cerevisiae/ultrastructure , Saccharomyces cerevisiae Proteins/chemistry , Structure-Activity Relationship , Time Factors , Vacuoles/metabolism , Vacuoles/ultrastructure , Vesicular Transport Proteins/metabolism
3.
Methods Mol Biol ; 2317: 109-132, 2021.
Article in English | MEDLINE | ID: mdl-34028765

ABSTRACT

While chlorophyll has served as an excellent label for plastids in green tissue, the development of fluorescent proteins has allowed their ready visualization in all tissues of the plants, revealing new features of their morphology and motility, including the presence of plastid extensions known as stromules. Gene regulatory sequences in nuclear transgenes that target proteins to plastids, as well as in transgenes introduced into plastid genomes, can be assessed or optimized through the use of fluorescent protein reporters. Fluorescent labeling of plastids simultaneously with other subcellular locations reveals dynamic interactions and mutant phenotypes. Transient expression of fluorescent protein fusions is particularly valuable to determine whether or not a protein of unknown function is targeted to the plastid. Fluorescent biosensors can assay molecules such as ATP, calcium, or reactive oxygen species. Particle bombardment and agroinfiltration methods described here are convenient for imaging fluorescent proteins in plant organelles. With proper selection of fluorophores for labeling the components of the plant cell, confocal microscopy and multiphoton microscopy can produce extremely informative images at high resolution at depths not feasible by standard epifluorescence microscopy.


Subject(s)
Cytoplasmic Vesicles/ultrastructure , Luminescent Proteins/metabolism , Microscopy, Confocal/methods , Plant Proteins/metabolism , Plants, Genetically Modified/metabolism , Plastids/ultrastructure , Transgenes , Cell Nucleus/genetics , Cell Nucleus/metabolism , Cytoplasmic Vesicles/physiology , Luminescent Proteins/genetics , Plant Proteins/genetics , Plants, Genetically Modified/genetics , Plastids/physiology
4.
Dev Cell ; 56(10): 1452-1468.e8, 2021 05 17.
Article in English | MEDLINE | ID: mdl-33878344

ABSTRACT

Niemann-Pick disease type C (NPC) is a neurodegenerative lysosomal storage disorder characterized by lipid accumulation in endolysosomes. An early pathologic hallmark is axonal dystrophy occurring at presymptomatic stages in NPC mice. However, the mechanisms underlying this pathologic change remain obscure. Here, we demonstrate that endocytic-autophagic organelles accumulate in NPC dystrophic axons. Using super-resolution and live-neuron imaging, we reveal that elevated cholesterol on NPC lysosome membranes sequesters kinesin-1 and Arl8 independent of SKIP and Arl8-GTPase activity, resulting in impaired lysosome transport into axons, contributing to axonal autophagosome accumulation. Pharmacologic reduction of lysosomal membrane cholesterol with 2-hydroxypropyl-ß-cyclodextrin (HPCD) or elevated Arl8b expression rescues lysosome transport, thereby reducing axonal autophagic stress and neuron death in NPC. These findings demonstrate a pathological mechanism by which altered membrane lipid composition impairs lysosome delivery into axons and provide biological insights into the translational application of HPCD in restoring axonal homeostasis at early stages of NPC disease.


Subject(s)
Autophagy , Axons/metabolism , Lipids/chemistry , Lysosomes/metabolism , Muscular Dystrophies/pathology , Niemann-Pick Disease, Type C/pathology , Stress, Physiological , Animals , Autophagosomes/metabolism , Autophagosomes/ultrastructure , Biological Transport , Cell Death , Cholesterol/metabolism , Cytoplasmic Vesicles/metabolism , Cytoplasmic Vesicles/ultrastructure , GTP Phosphohydrolases/metabolism , Intracellular Membranes/metabolism , Kinesins/metabolism , Mice, Inbred BALB C , Muscular Dystrophies/complications , Niemann-Pick C1 Protein/deficiency , Niemann-Pick C1 Protein/metabolism , Niemann-Pick Disease, Type C/complications
5.
Am J Physiol Heart Circ Physiol ; 320(2): H535-H548, 2021 02 01.
Article in English | MEDLINE | ID: mdl-33275518

ABSTRACT

Preeclampsia is characterized by increases in blood pressure and proteinuria in late pregnancy, and neurological symptoms can appear in the form of headaches, blurred vision, cerebral edema, and, in the most severe cases, seizures (eclampsia). The causes for these cerebral manifestations remain unknown, so the use of animal models that mimic preeclampsia is essential to understanding its pathogenesis. The Dahl salt-sensitive (Dahl SS/jr) rat model develops spontaneous preeclampsia superimposed on chronic hypertension; therefore, we hypothesized that the Dahl SS/jr rat would display cerebrovascular features similar to those seen in human preeclampsia. Furthermore, we predicted that this model would allow for the identification of mechanisms underlying these changes. The pregnant Dahl SS/jr rat displayed increased cerebral edema and blood-brain barrier disruption despite tighter control of cerebral blood flow autoregulation and vascular smooth muscle myogenic tone. Analysis of cerebral endothelial cell morphology revealed increased opening of tight junctions, basement membrane dissolution, and vesicle formation. RNAseq analysis identified that genes related to endothelial cell tight junctions and blood-brain barrier integrity were differentially expressed in cerebral vessels from pregnant Dahl SS/jr compared with healthy pregnant Sprague Dawley rats. Overall, our data reveal new insights into mechanisms involved in the cerebrovascular dysfunction of preeclampsia.NEW & NOTEWORTHY This study uses the Dahl SS/jr rat as a preclinical model of spontaneous superimposed preeclampsia to demonstrate uncoupling of cerebral vascular permeability and blood-brain barrier disruption from cerebral blood flow autoregulatory dysfunction and myogenic tone. Additionally, the data presented in this study lay the foundational framework on which future experiments assessing specific transcellular transport components such as individual transporter protein expression and components of the vesicular transport system (caveolae) can be built to help reveal a potential direct mechanistic insight into the causes of cerebrovascular complications during preeclamptic pregnancies.


Subject(s)
Blood-Brain Barrier/metabolism , Brain Edema/pathology , Capillary Permeability , Endothelial Cells/ultrastructure , Pre-Eclampsia/pathology , Animals , Basement Membrane/ultrastructure , Blood-Brain Barrier/ultrastructure , Brain Edema/metabolism , Cytoplasmic Vesicles/ultrastructure , Endothelial Cells/metabolism , Endothelium, Vascular/metabolism , Endothelium, Vascular/ultrastructure , Female , Pre-Eclampsia/metabolism , Pregnancy , Rats , Rats, Inbred Dahl , Rats, Sprague-Dawley , Tight Junctions/ultrastructure
6.
Int J Mol Sci ; 21(19)2020 Oct 07.
Article in English | MEDLINE | ID: mdl-33036492

ABSTRACT

A specific series of peptides, called a cell-penetrating peptide (CPP), is known to be free to directly permeate through cell membranes into the cytosol (cytolysis); hence, this CPP would be a potent carrier for a drug delivery system (DDS). Previously, we proposed the mechanism of cytolysis as a temporal and local phase transfer of membrane lipid caused by positive membrane curvature generation. Moreover, we showed how to control the CPP cytolysis. Here, we investigate the phospholipid vesicle's size effect on CPP cytolysis because this is the most straightforward way to control membrane curvature. Contrary to our expectation, we found that the smaller the vesicle diameter (meaning a higher membrane curvature), the more cytolysis was suppressed. Such controversial findings led us to seek the reason for the unexpected results, and we ended up finding out that the mobility of membrane lipids as a liquid crystal is the key to cytolysis. As a result, we could explain the cause of cytolysis suppression by reducing the vesicle size (because of the restriction of lipid mobility); osmotic pressure reduction to enhance positive curvature generation works as long as the membrane is mobile enough to modulate the local structure. Taking all the revealed vital factors and their effects as a tool, we will further explore how to control CPP cytolysis for developing a DDS system combined with appropriate cargo selection to be tagged with CPPs.


Subject(s)
Cell-Penetrating Peptides/metabolism , Cytoplasmic Vesicles/metabolism , Algorithms , Biological Transport , Cell Membrane/metabolism , Cell Membrane Permeability , Chemical Phenomena , Cytoplasmic Vesicles/chemistry , Cytoplasmic Vesicles/ultrastructure , Lipid Bilayers/chemistry , Models, Theoretical , Spectrum Analysis
7.
Sci Rep ; 10(1): 16803, 2020 10 08.
Article in English | MEDLINE | ID: mdl-33033331

ABSTRACT

Tunneling nanotubes (TNTs) are F-actin rich structures that connect distant cells, allowing the transport of many cellular components, including vesicles, organelles and molecules. Rab GTPases are the major regulators of vesicle trafficking and also participate in actin cytoskeleton remodelling, therefore, we examined their role in TNTs. Rab35 functions with several proteins that are involved in vesicle trafficking such as ACAP2, MICAL-L1, ARF6 and EHD1, which are known to be involved in neurite outgrowth. Here we show that Rab35 promotes TNT formation and TNT-mediated vesicle transfer in a neuronal cell line. Furthermore, our data indicates that Rab35-GTP, ACAP2, ARF6-GDP and EHD1 act in a cascade mechanism to promote TNT formation. Interestingly, MICAL-L1 overexpression, shown to be necessary for the action of Rab35 on neurite outgrowth, showed no effect on TNTs, indicating that TNT formation and neurite outgrowth may be processed through similar but not identical pathways, further supporting the unique identity of these cellular protrusions.


Subject(s)
Nanotubes , Neurons/metabolism , rab GTP-Binding Proteins/metabolism , ADP-Ribosylation Factor 6 , ADP-Ribosylation Factors/metabolism , Animals , Blotting, Western , Cell Line , Cytoplasmic Vesicles/metabolism , Cytoplasmic Vesicles/ultrastructure , Flow Cytometry , GTPase-Activating Proteins/metabolism , Mice , Microscopy, Electron, Scanning , Microscopy, Fluorescence , Nanotubes/ultrastructure , Neurons/ultrastructure , Vesicular Transport Proteins/metabolism
8.
EMBO J ; 39(20): e105117, 2020 10 15.
Article in English | MEDLINE | ID: mdl-32840906

ABSTRACT

Heterotetrameric adapter (AP) complexes cooperate with the small GTPase Arf1 or lipids in cargo selection, vesicle formation, and budding at endomembranes in eukaryotic cells. While most AP complexes also require clathrin as the outer vesicle shell, formation of AP-3-coated vesicles involved in Golgi-to-vacuole transport in yeast has been postulated to depend on Vps41, a subunit of the vacuolar HOPS tethering complex. HOPS has also been identified as the tether of AP-3 vesicles on vacuoles. To unravel this conundrum of a dual Vps41 function, we anchored Vps41 stably to the mitochondrial outer membrane. By monitoring AP-3 recruitment, we now show that Vps41 can tether AP-3 vesicles to mitochondria, yet AP-3 vesicles can form in the absence of Vps41 or clathrin. By proximity labeling and mass spectrometry, we identify the Arf1 GTPase-activating protein (GAP) Age2 at the AP-3 coat and show that tethering, but not fusion at the vacuole can occur without complete uncoating. We conclude that AP-3 vesicles retain their coat after budding and that their complete uncoating occurs only after tethering at the vacuole.


Subject(s)
ADP-Ribosylation Factors/metabolism , Cytoplasmic Vesicles/metabolism , GTPase-Activating Proteins/metabolism , Mitochondrial Membranes/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Vacuoles/metabolism , Vesicular Transport Proteins/metabolism , ADP-Ribosylation Factors/genetics , Biological Transport, Active/genetics , Casein Kinase I/genetics , Casein Kinase I/metabolism , Cytoplasmic Vesicles/ultrastructure , GTPase-Activating Proteins/genetics , Gene Deletion , Golgi Apparatus/metabolism , Mass Spectrometry , Membrane Fusion , Microscopy, Electron , Mitochondrial Membranes/ultrastructure , Saccharomyces cerevisiae Proteins/genetics , Vacuoles/ultrastructure , Vesicular Transport Proteins/genetics
9.
Science ; 369(6509): 1395-1398, 2020 09 11.
Article in English | MEDLINE | ID: mdl-32763915

ABSTRACT

Coronavirus genome replication is associated with virus-induced cytosolic double-membrane vesicles, which may provide a tailored microenvironment for viral RNA synthesis in the infected cell. However, it is unclear how newly synthesized genomes and messenger RNAs can travel from these sealed replication compartments to the cytosol to ensure their translation and the assembly of progeny virions. In this study, we used cellular cryo-electron microscopy to visualize a molecular pore complex that spans both membranes of the double-membrane vesicle and would allow export of RNA to the cytosol. A hexameric assembly of a large viral transmembrane protein was found to form the core of the crown-shaped complex. This coronavirus-specific structure likely plays a key role in coronavirus replication and thus constitutes a potential drug target.


Subject(s)
Cytoplasmic Vesicles/chemistry , Intracellular Membranes/chemistry , Murine hepatitis virus/physiology , RNA, Viral/biosynthesis , Virus Replication , Animals , Cryoelectron Microscopy , Cytoplasmic Vesicles/ultrastructure , Cytoplasmic Vesicles/virology , Electron Microscope Tomography , Intracellular Membranes/ultrastructure , Intracellular Membranes/virology , Mice , Viral Nonstructural Proteins/chemistry
10.
Sci Adv ; 6(14): eaay9572, 2020 04.
Article in English | MEDLINE | ID: mdl-32270040

ABSTRACT

The endoplasmic reticulum (ER) is a highly dynamic network of membranes. Here, we combine live-cell microscopy with in situ cryo-electron tomography to directly visualize ER dynamics in several secretory cell types including pancreatic ß-cells and neurons under near-native conditions. Using these imaging approaches, we identify a novel, mobile form of ER, ribosome-associated vesicles (RAVs), found primarily in the cell periphery, which is conserved across different cell types and species. We show that RAVs exist as distinct, highly dynamic structures separate from the intact ER reticular architecture that interact with mitochondria via direct intermembrane contacts. These findings describe a new ER subcompartment within cells.


Subject(s)
Cytoplasmic Vesicles/metabolism , Endoplasmic Reticulum/metabolism , Ribosomes/metabolism , Animals , Biological Transport , Cryoelectron Microscopy , Cytoplasmic Vesicles/ultrastructure , Endoplasmic Reticulum/ultrastructure , Golgi Apparatus/metabolism , Golgi Apparatus/ultrastructure , Mice , Mitochondria/metabolism , Mitochondria/ultrastructure , Molecular Imaging , Organ Specificity , Rats , Ribosomes/ultrastructure , Stress, Physiological
11.
Int J Mol Sci ; 21(6)2020 Mar 21.
Article in English | MEDLINE | ID: mdl-32245189

ABSTRACT

This paper proposes the hypothesis that cytoplasmic organelles directly interact with each other and with gap junctions forming intracellular junctions. This hypothesis originated over four decades ago based on the observation that vesicles lining gap junctions of crayfish giant axons contain electron-opaque particles, similar in size to junctional innexons that often appear to directly interact with junctional innexons; similar particles were seen also in the outer membrane of crayfish mitochondria. Indeed, vertebrate connexins assembled into hexameric connexons are present not only in the membranes of the Golgi apparatus but also in those of the mitochondria and endoplasmic reticulum. It seems possible, therefore, that cytoplasmic organelles may be able to exchange small molecules with each other as well as with organelles of coupled cells via gap junctions.


Subject(s)
Axons/metabolism , Connexins/metabolism , Cytoplasm/metabolism , Cytoplasmic Vesicles/metabolism , Gap Junctions/metabolism , Golgi Apparatus/metabolism , Mitochondria/metabolism , Animals , Astacoidea , Axons/ultrastructure , Biological Transport/physiology , Calmodulin/chemistry , Calmodulin/metabolism , Connexins/chemistry , Cytoplasmic Vesicles/ultrastructure , Endoplasmic Reticulum/metabolism , Gap Junctions/ultrastructure , Ion Channels/metabolism , Microscopy, Electron , Mitochondria/ultrastructure , Models, Chemical , Submitochondrial Particles/metabolism , Submitochondrial Particles/ultrastructure
12.
Arthritis Rheumatol ; 72(9): 1534-1546, 2020 09.
Article in English | MEDLINE | ID: mdl-32270915

ABSTRACT

OBJECTIVE: It was previously shown that HLA-B27 subtypes predisposing to spondyloarthritis (SpA), i.e., B*27:02, B*27:05, and B*27:07, displayed an increased propensity to form intracellular oligomers and to accumulate at a high density in cytoplasmic vesicles, as compared to the non-SpA-associated HLA-B*07:02 and HLA-B*27:06. This study was undertaken to characterize the nature and content of HLA-B-containing vesicles and to further examine their relevance to SpA predisposition. METHODS: Vesicles containing HLA-B proteins were detected in transfected HeLa cells and in cells from SpA patients or HLA-B27/human ß2 -microglobulin (hß2 m)-transgenic rats, by microscopy. The nature and content of HLA-B-containing vesicles were characterized in colocalization experiments with appropriate markers. RESULTS: The SpA-associated HLA-B*27:04 subtype accumulated at higher levels (P < 10-5 ) in cytoplasmic vesicles compared to HLA-B*27:06, from which it differs only by 2 substitutions, reinforcing the correlation between vesicle formation and SpA predisposition. Colocalization studies showed that those vesicles contained misfolded HLA-B heavy chain along with ß2 m and endoplasmic reticulum (ER) chaperones (calnexin, calreticulin, BiP, glucose-regulated protein 94-kd) and belonged to the ER but were distinct from the peptide-loading complex (PLC). Similar vesicles were observed in immune cells from HLA-B27+ SpA patients, in greater abundance than in healthy controls (P < 0.01), and in dendritic cells from HLA-B27/hß2 m transgenic rats, correlating with SpA susceptibility. CONCLUSION: Accumulation of misfolded HLA-B heavy chain along with ß2 m and ER chaperones into ER-derived vesicles distinct from the PLC is a characteristic feature of HLA-B27 subtypes predisposing to SpA. This phenomenon could contribute to HLA-B27 pathogenicity, via a noncanonical mechanism.


Subject(s)
Cytoplasmic Vesicles/metabolism , Endoplasmic Reticulum/metabolism , HLA-B27 Antigen/metabolism , Molecular Chaperones/metabolism , Spondylitis, Ankylosing/metabolism , Animals , Blotting, Western , Calnexin/metabolism , Calreticulin/metabolism , Cytoplasmic Vesicles/ultrastructure , Dendritic Cells/metabolism , Endoplasmic Reticulum/ultrastructure , Genetic Predisposition to Disease , HLA-B27 Antigen/genetics , HSP70 Heat-Shock Proteins/metabolism , HeLa Cells , Humans , Intravital Microscopy , Membrane Proteins/metabolism , Microscopy, Confocal , Microscopy, Electron , Microscopy, Fluorescence , Protein Disulfide-Isomerases/metabolism , Protein Folding , Rats , Rats, Transgenic , Spondylitis, Ankylosing/genetics , beta 2-Microglobulin/genetics , beta 2-Microglobulin/metabolism
13.
J Microsc ; 278(2): 59-75, 2020 05.
Article in English | MEDLINE | ID: mdl-32141623

ABSTRACT

In fluorescence microscopy imaging, the segmentation of adjacent cell membranes within cell aggregates, multicellular samples, tissue, organs, or whole organisms remains a challenging task. The lipid bilayer is a very thin membrane when compared to the wavelength of photons in the visual spectra. Fluorescent molecules or proteins used for labelling membranes provide a limited signal intensity, and light scattering in combination with sample dynamics during in vivo imaging lead to poor or ambivalent signal patterns that hinder precise localisation of the membrane sheets. In the proximity of cells, membranes approach and distance each other. Here, the presence of membrane protrusions such as blebs; filopodia and lamellipodia; microvilli; or membrane vesicle trafficking, lead to a plurality of signal patterns, and the accurate localisation of two adjacent membranes becomes difficult. Several computational methods for membrane segmentation have been introduced. However, few of them specifically consider the accurate detection of adjacent membranes. In this article we present ALPACA (ALgorithm for Piecewise Adjacent Contour Adjustment), a novel method based on 2D piecewise parametric active contours that allows: (i) a definition of proximity for adjacent contours, (ii) a precise detection of adjacent, nonadjacent, and overlapping contour sections, (iii) the definition of a polyline for an optimised shared contour within adjacent sections and (iv) a solution for connecting adjacent and nonadjacent sections under the constraint of preserving the inherent cell morphology. We show that ALPACA leads to a precise quantification of adjacent and nonadjacent membrane zones in regular hexagons and live image sequences of cells of the parapineal organ during zebrafish embryo development. The algorithm detects and corrects adjacent, nonadjacent, and overlapping contour sections within a selected adjacency distance d, calculates shared contour sections for neighbouring cells with minimum alterations of the contour characteristics, and presents piecewise active contour solutions, preserving the contour shape and the overall cell morphology. ALPACA quantifies adjacent contours and can improve the meshing of 3D surfaces, the determination of forces, or tracking of contours in combination with previously published algorithms. We discuss pitfalls, strengths, and limits of our approach, and present a guideline to take the best decision for varying experimental conditions for in vivo microscopy.


Subject(s)
Cell Membrane/ultrastructure , Cell Surface Extensions/ultrastructure , Image Processing, Computer-Assisted/methods , Imaging, Three-Dimensional/methods , Microscopy, Fluorescence/methods , Algorithms , Animals , Animals, Genetically Modified , Cytoplasmic Vesicles/ultrastructure , Embryo, Nonmammalian , Humans , Microvilli/ultrastructure , Pseudopodia/ultrastructure , Zebrafish/embryology
14.
Anaerobe ; 61: 102090, 2020 Feb.
Article in English | MEDLINE | ID: mdl-31442559

ABSTRACT

Bacterial vaginosis (BV) is a common polymicrobial infection affecting women in the reproductive age and is associated with adverse obstetric and gynaecological outcomes. Gardnerella vaginalis is the most virulent anaerobic bacterial species predominantly associated with BV. However, a clear understanding of the mechanisms by which it contributes to the pathogenesis and persistence of BV is lacking. In this report, we demonstrate for the first time, the isolation of membrane vesicles (MVs) from G. vaginalis ATCC 14019. These MVs are approximately 120-260 nm in diameter. Proteomic characterization of the MVs by LC-MS/MS led to the identification of 417 proteins, including proteins involved in cellular metabolism as well as molecular chaperones and certain virulence factors. Immunoblot analysis of the MVs confirmed the presence of vaginolysin, the most well-characterized virulence factor of G. vaginalis. The exposure of the vaginal epithelial cells, VK2/E6E7 to the G. vaginalis MVs resulted in the internalization of the MVs. The MVs induced cytotoxicity and an increase in the levels of the pro-inflammatory cytokine, IL-8 in VK2 cells as well lysis of erythrocytes. The results of the study indicate that G. vaginalis MVs may be involved in the delivery of cytotoxic proteins and other virulence factors to the host cells and could thereby contribute towards enhancing the cellular damage associated with pathogenesis of BV.


Subject(s)
Cytoplasmic Vesicles/metabolism , Epithelial Cells/microbiology , Gardnerella vaginalis/physiology , Vaginosis, Bacterial/microbiology , Bacterial Proteins , Cell Survival , Computational Biology/methods , Cytokines/metabolism , Cytoplasmic Vesicles/ultrastructure , Female , Gardnerella vaginalis/ultrastructure , Hemolysis , Humans , Mass Spectrometry , Proteome , Proteomics/methods , Vaginosis, Bacterial/pathology
15.
Brain ; 143(1): 94-111, 2020 01 01.
Article in English | MEDLINE | ID: mdl-31855247

ABSTRACT

Cerebral choline metabolism is crucial for normal brain function, and its homoeostasis depends on carrier-mediated transport. Here, we report on four individuals from three families with neurodegenerative disease and homozygous frameshift mutations (Asp517Metfs*19, Ser126Metfs*8, and Lys90Metfs*18) in the SLC44A1 gene encoding choline transporter-like protein 1. Clinical features included progressive ataxia, tremor, cognitive decline, dysphagia, optic atrophy, dysarthria, as well as urinary and bowel incontinence. Brain MRI demonstrated cerebellar atrophy and leukoencephalopathy. Moreover, low signal intensity in globus pallidus with hyperintensive streaking and low signal intensity in substantia nigra were seen in two individuals. The Asp517Metfs*19 and Ser126Metfs*8 fibroblasts were structurally and functionally indistinguishable. The most prominent ultrastructural changes of the mutant fibroblasts were reduced presence of free ribosomes, the appearance of elongated endoplasmic reticulum and strikingly increased number of mitochondria and small vesicles. When chronically treated with choline, those characteristics disappeared and mutant ultrastructure resembled healthy control cells. Functional analysis revealed diminished choline transport yet the membrane phosphatidylcholine content remained unchanged. As part of the mechanism to preserve choline and phosphatidylcholine, choline transporter deficiency was implicated in impaired membrane homeostasis of other phospholipids. Choline treatments could restore the membrane lipids, repair cellular organelles and protect mutant cells from acute iron overload. In conclusion, we describe a novel childhood-onset neurometabolic disease caused by choline transporter deficiency with autosomal recessive inheritance.


Subject(s)
Antigens, CD/genetics , Heredodegenerative Disorders, Nervous System/genetics , Organic Cation Transport Proteins/genetics , Adolescent , Ataxia/genetics , Ataxia/physiopathology , Atrophy , Cerebellum/diagnostic imaging , Cerebellum/pathology , Choline/pharmacology , Cognitive Dysfunction/genetics , Cognitive Dysfunction/physiopathology , Cytoplasmic Vesicles/drug effects , Cytoplasmic Vesicles/ultrastructure , Deglutition Disorders/genetics , Deglutition Disorders/physiopathology , Dysarthria/genetics , Dysarthria/physiopathology , Endoplasmic Reticulum/drug effects , Endoplasmic Reticulum/ultrastructure , Fecal Incontinence/genetics , Fecal Incontinence/physiopathology , Female , Fibroblasts/drug effects , Fibroblasts/ultrastructure , Frameshift Mutation , Globus Pallidus/diagnostic imaging , Heredodegenerative Disorders, Nervous System/diagnostic imaging , Heredodegenerative Disorders, Nervous System/pathology , Heredodegenerative Disorders, Nervous System/physiopathology , Homozygote , Humans , Leukoencephalopathies/diagnostic imaging , Leukoencephalopathies/genetics , Leukoencephalopathies/physiopathology , Magnetic Resonance Imaging , Male , Microscopy, Electron , Mitochondria/drug effects , Mitochondria/ultrastructure , Nootropic Agents/pharmacology , Optic Atrophy/genetics , Optic Atrophy/physiopathology , Pedigree , Ribosomes/drug effects , Ribosomes/ultrastructure , Substantia Nigra/diagnostic imaging , Syndrome , Tremor/genetics , Tremor/physiopathology , Urinary Incontinence/genetics , Urinary Incontinence/physiopathology
16.
G3 (Bethesda) ; 9(12): 4007-4017, 2019 12 03.
Article in English | MEDLINE | ID: mdl-31649044

ABSTRACT

Drosophila melanogaster photoreceptor cells are highly polarized epithelial cells. Their apical membrane is further subdivided into the stalk membrane and the light-sensing rhabdomere. The photo-pigment Rhodopsin1 (Rh1) localizes to the rhabdomere, whereas the apical determinant Crumbs (Crb) is enriched at the stalk membrane. The proteoglycan Eyes shut (Eys) is secreted through the apical membrane into an inter-rhabdomeral space. Rh1, Crb, and Eys are essential for the development of photoreceptor cells, normal vision, and photoreceptor cell survival. Human orthologs of all three proteins have been linked to retinal degenerative diseases. Here, we describe an RNAi-based screen examining the importance of 237 trafficking-related genes in apical trafficking of Eys, Rh1, and Crb. We found 28 genes that have an effect on the localization and/or levels of these apical proteins and analyzed several factors in more detail. We show that the Arf GEF protein Sec71 is required for biosynthetic traffic of both apical and basolateral proteins, that the exocyst complex and the microtubule-based motor proteins dynein and kinesin promote the secretion of Eys and Rh1, and that Syntaxin 7/Avalanche controls the endocytosis of Rh1, Eys, and Crb.


Subject(s)
Cell Polarity/genetics , Drosophila melanogaster/cytology , Drosophila melanogaster/genetics , Genes, Insect , Photoreceptor Cells, Invertebrate/cytology , Animals , Cytoplasmic Vesicles/metabolism , Cytoplasmic Vesicles/ultrastructure , Drosophila Proteins/metabolism , Drosophila melanogaster/ultrastructure , Endocytosis , Exocytosis , Microtubules/metabolism , Photoreceptor Cells, Invertebrate/ultrastructure , Protein Biosynthesis , Protein Transport , RNA Interference
17.
J Virol ; 93(19)2019 10 01.
Article in English | MEDLINE | ID: mdl-31292247

ABSTRACT

A/H1N1 2009 pandemic influenza virus (A/H1N1/pdm09) was first identified as a novel pandemic influenza A virus (IAV) in 2009. Previously, we reported that many viral antigens were detected in type II alveolar epithelial cells (AEC-IIs) within autopsied lung tissue from a patient with A/H1N1/pdm09 pneumonia. It is important to identify the association between the virus and host cells to elucidate the pathogenesis of IAV pneumonia. To investigate the distribution of virus particles and morphological changes in host cells, the autopsied lung specimens from this patient were examined using transmission electron microscopy (TEM) and a novel scanning electron microscopy (SEM) method. We focused on AEC-IIs as viral antigen-positive cells and on monocytes/macrophages (Ms/Mϕs) and neutrophils (Neus) as innate immune cells. We identified virus particles and intranuclear dense tubules, which are associated with matrix 1 (M1) proteins from IAV. Large-scale two-dimensional observation was enabled by digitally "stitching" together contiguous SEM images. A single whole-cell analysis using a serial section array (SSA)-SEM identified virus particles in vesicles within the cytoplasm and/or around the surfaces of AEC-IIs, Ms/Mϕs, and Neus; however, intranuclear dense tubules were found only in AEC-IIs. Computer-assisted processing of SSA-SEM images from each cell type enabled three-dimensional (3D) modeling of the distribution of virus particles within an ACE-II, a M/Mϕ, and a Neu.IMPORTANCE Generally, it is difficult to observe IAV particles in postmortem samples from patients with seasonal influenza. In fact, only a few viral antigens are detected in bronchial epithelial cells from autopsied lung sections. Previously, we detected many viral antigens in AEC-IIs from the lung. This was because the majority of A/H1N1/pdm09 in the lung tissue harbored an aspartic acid-to-glycine substitution at position 222 (D222G) of the hemagglutinin protein. A/H1N1/pdm09 harboring the D222G substitution has a receptor-binding preference for α-2,3-linked sialic acids expressed on human AECs and infects them in the same way as H5N1 and H7N9 avian IAVs. Here, we report the first successful observation of virus particles, not only in AEC-IIs, but also in Ms/Mϕs and Neus, using electron microscopy. The finding of a M/Mϕ harboring numerous virus particles within vesicles and at the cell surface suggests that Ms/Mϕs are involved in the pathogenesis of IAV primary pneumonia.


Subject(s)
Alveolar Epithelial Cells/pathology , Alveolar Epithelial Cells/virology , Influenza A Virus, H1N1 Subtype/isolation & purification , Influenza, Human/pathology , Influenza, Human/virology , Lung/pathology , Adult , Autopsy , Cell Membrane/ultrastructure , Cell Membrane/virology , Cytoplasm/ultrastructure , Cytoplasm/virology , Cytoplasmic Vesicles/ultrastructure , Cytoplasmic Vesicles/virology , Humans , Macrophages/virology , Male , Microscopy, Electron, Scanning , Microscopy, Electron, Transmission , Neutrophils/virology
18.
Proc Natl Acad Sci U S A ; 116(19): 9370-9379, 2019 05 07.
Article in English | MEDLINE | ID: mdl-31004057

ABSTRACT

We report a complete 3D structural model of typical epithelial primary cilia based on structural maps of full-length primary cilia obtained by serial section electron tomography. Our data demonstrate the architecture of primary cilia differs extensively from the commonly acknowledged 9+0 paradigm. The axoneme structure is relatively stable but gradually evolves from base to tip with a decreasing number of microtubule complexes (MtCs) and a reducing diameter. The axonemal MtCs are cross-linked by previously unrecognized fibrous protein networks. Such an architecture explains why primary cilia can elastically withstand liquid flow for mechanosensing. The nine axonemal MtCs in a cilium are found to differ significantly in length indicating intraflagellar transport processes in primary cilia may be more complicated than that reported for motile cilia. The 3D maps of microtubule doublet-singlet transitions generally display longitudinal gaps at the inner junction between the A- and B-tubules, which indicates the inner junction protein is a major player in doublet-singlet transitions. In addition, vesicles releasing from kidney primary cilia were observed in the structural maps, supporting that ciliary vesicles budding may serve as ectosomes for cell-cell communication.


Subject(s)
Cilia/ultrastructure , Epithelial Cells/ultrastructure , Animals , Axoneme/metabolism , Axoneme/ultrastructure , Cell Line , Cilia/metabolism , Cytoplasmic Vesicles/metabolism , Cytoplasmic Vesicles/ultrastructure , Dogs , Electron Microscope Tomography , Epithelial Cells/metabolism , Imaging, Three-Dimensional , Microtubules/metabolism
19.
J Membr Biol ; 252(1): 1-16, 2019 02.
Article in English | MEDLINE | ID: mdl-30392010

ABSTRACT

The present research report describes Na+/H+ antiport by brush border membrane vesicles isolated from whole larvae of Aedes aegypti (AeBBMVw). Our hypothesis is that acid quenching of acridine orange by AeBBMVw is predominantly mediated by Na+/H+ antiport via the NHA1 component of the AeBBMVw in the absence of amino acids and ATP. AeNHA1 is a Na+/H+ antiporter that has been postulated to exchange Na+ and H+ across the apical plasma membrane in posterior midgut of A. aegypti larvae. Its principal function is to recycle the H+ and Na+ that are transported during amino acid uptake, e.g., phenylalanine. This uptake is mediated, in part, by a voltage-driven, Na+-coupled, nutrient amino acid transporter (AeNAT8). The voltage is generated by an H+ V-ATPase. All three components, V-ATPase, antiporter, and nutrient amino acid transporter (VAN), are present in brush border membrane vesicles isolated from whole larvae of A. aegypti. By omitting ATP and amino acids, Na+/H+ antiport was measured by fluorescence quenching of acridine orange (AO) caused by acidification of either the internal vesicle medium (Na+in > Na+out) or the external fluid-membrane interface (Na+in < Na+out). Vesicles with 100 micromolar Na+ inside and 10 micromolar Na+ outside or with 0.01 micromolar Na+ inside and 100 micromolar Na+ outside quenched fluorescence of AO by as much as 30%. Acidification did not occur in the absence of AeBBMVw. Preincubation of AeBBMVw with antibodies to NHA1 inhibit Na+/H+ antiport dependent fluorescence quenching, indicating that AeNHA1 has a significant role in Na+/H+ exchange.


Subject(s)
Aedes/drug effects , Aedes/metabolism , Antibodies/pharmacology , Cytoplasmic Vesicles/metabolism , Microvilli/metabolism , Sodium-Hydrogen Exchangers/antagonists & inhibitors , Animals , Biological Transport/drug effects , Cytoplasmic Vesicles/ultrastructure , Hydrogen-Ion Concentration , Ions/metabolism , Kinetics , Larva , Microvilli/ultrastructure , Models, Biological
20.
Oxid Med Cell Longev ; 2018: 1724648, 2018.
Article in English | MEDLINE | ID: mdl-30405874

ABSTRACT

Solute carrier family 26 member 6 (Slc26a6), which is mainly expressed in the intestines and kidneys, is a multifunctional anion transporter that is crucial in the transport of oxalate anions. This study is aimed at investigating the effect of Slc26a6 expression on oxalate-induced cell oxidation and crystal formation. Lentivirus transfection was used to upregulate or downregulate Slc26a6 expression in NRK cells. Cell viability and apoptosis, reactive oxygen species (ROS) and malondialdehyde (MDA) generation, and superoxide dismutase (SOD) activity were measured. Crystal adhesion and the cell ultrastructure were observed using light and transmission electron microscopy (TEM). Three groups of rats, normal control, lentivirus-vector, and lentivirus-small interfering RNA (lv-siRNA) groups, were used, and after lentivirus transfection, they were fed 1% ethylene glycol (EG) and 0.5% ammonium chloride (NH4Cl) for 2 weeks. Dihydroethidium (DHE), terminal deoxynucleotidyl transferase (TdT) deoxyuridine dUTP nick-end labeling (TUNEL), and von Kossa staining were performed, and nuclear factor κB (NFκB) and osteopontin (OPN) expression were measured. In the vitro study, compared to the control group, downregulated Slc26a6 NRK cells showed alleviation of the cell viability decrease, cell apoptosis rate, ROS generation, and SOD activity decrease after oxalate treatment. Crystal adhesion and vesicles were significantly less after oxalate exposure than in the untreated controls. Rats infected with lentivirus-siRNA exhibited attenuated SOD generation, cell apoptosis, and crystal formation in the kidneys. Increased phosphorylation of NFκB and OPN was involved in the pathological process. In conclusion, the results of the present study indicate that reducing the expression of Slc26a6 in the kidney may be a potential strategy for preventing stone formation.


Subject(s)
Antiporters/metabolism , Down-Regulation , Intracellular Space/metabolism , Oxidative Stress , Animals , Apoptosis , Cell Line , Cell Survival , Cytoplasmic Vesicles/metabolism , Cytoplasmic Vesicles/ultrastructure , Kidney/pathology , Lipid Peroxidation , Male , Models, Biological , NF-KappaB Inhibitor alpha/metabolism , Osteopontin/metabolism , Oxalates , RNA, Small Interfering/metabolism , Rats, Sprague-Dawley , Reactive Oxygen Species/metabolism , Sulfate Transporters , Transcription Factor RelA/metabolism , Transfection , Transgenes
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