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1.
Nat Metab ; 5(1): 41-60, 2023 01.
Article in English | MEDLINE | ID: mdl-36658399

ABSTRACT

Oxidative stress modulates carcinogenesis in the liver; however, direct evidence for metabolic control of oxidative stress during pathogenesis, particularly, of progression from cirrhosis to hepatocellular carcinoma (HCC), has been lacking. Deficiency of transaldolase (TAL), a rate-limiting enzyme of the non-oxidative branch of the pentose phosphate pathway (PPP), restricts growth and predisposes to cirrhosis and HCC in mice and humans. Here, we show that mitochondrial oxidative stress and progression from cirrhosis to HCC and acetaminophen-induced liver necrosis are critically dependent on NADPH depletion and polyol buildup by aldose reductase (AR), while this enzyme protects from carbon trapping in the PPP and growth restriction in TAL deficiency. Both TAL and AR are confined to the cytosol; however, their inactivation distorts mitochondrial redox homeostasis in opposite directions. The results suggest that AR acts as a rheostat of carbon recycling and NADPH output of the PPP with broad implications for disease progression from cirrhosis to HCC.


Subject(s)
Carcinoma, Hepatocellular , Liver Neoplasms , Humans , Animals , Mice , Carcinoma, Hepatocellular/pathology , Cytosol/pathology , NADP , Liver Neoplasms/pathology , Carcinogenesis/pathology , Liver Cirrhosis/pathology
2.
Molecules ; 26(12)2021 Jun 11.
Article in English | MEDLINE | ID: mdl-34208178

ABSTRACT

The heat shock protein (HSP) 70 is considered the main hallmark in preclinical studies to stain the peri-infarct region defined area penumbra in preclinical models of brain ischemia. This protein is also considered as a potential disease modifier, which may improve the outcome of ischemic damage. In fact, the molecule HSP70 acts as a chaperonine being able to impact at several level the homeostasis of neurons. Despite being used routinely to stain area penumbra in light microscopy, the subcellular placement of this protein within area penumbra neurons, to our knowledge, remains undefined. This is key mostly when considering studies aimed at deciphering the functional role of this protein as a determinant of neuronal survival. The general subcellular placement of HSP70 was grossly reported in studies using confocal microscopy, although no direct visualization of this molecule at electron microscopy was carried out. The present study aims to provide a direct evidence of HSP70 within various subcellular compartments. In detail, by using ultrastructural morphometry to quantify HSP70 stoichiometrically detected by immuno-gold within specific organelles we could compare the compartmentalization of the molecule within area penumbra compared with control brain areas. The study indicates that two cell compartments in control conditions own a high density of HSP70, cytosolic vacuoles and mitochondria. In these organelles, HSP70 is present in amount exceeding several-fold the presence in the cytosol. Remarkably, within area penumbra a loss of such a specific polarization is documented. This leads to the depletion of HSP70 from mitochondria and mostly cell vacuoles. Such an effect is expected to lead to significant variations in the ability of HSP70 to exert its physiological roles. The present findings, beyond defining the neuronal compartmentalization of HSP70 within area penumbra may lead to a better comprehension of its beneficial/detrimental role in promoting neuronal survival.


Subject(s)
Brain Ischemia/metabolism , Cytosol/metabolism , HSP70 Heat-Shock Proteins/metabolism , Mitochondria/metabolism , Neurons/metabolism , Vacuoles/metabolism , Animals , Brain Ischemia/pathology , Cell Death/physiology , Cytosol/pathology , Disease Models, Animal , Immunohistochemistry , Male , Mice , Mice, Inbred C57BL , Microscopy, Confocal , Microscopy, Electron, Scanning , Mitochondria/pathology , Neurons/pathology , Vacuoles/pathology
3.
Front Immunol ; 12: 660560, 2021.
Article in English | MEDLINE | ID: mdl-33981307

ABSTRACT

The maintenance of genomic stability in multicellular organisms relies on the DNA damage response (DDR). The DDR encompasses several interconnected pathways that cooperate to ensure the repair of genomic lesions. Besides their repair functions, several DDR proteins have emerged as involved in the onset of inflammatory responses. In particular, several actors of the DDR have been reported to elicit innate immune activation upon detection of cytosolic pathological nucleic acids. Conversely, pattern recognition receptors (PRRs), initially described as dedicated to the detection of cytosolic immune-stimulatory nucleic acids, have been found to regulate DDR. Thus, although initially described as operating in specific subcellular localizations, actors of the DDR and nucleic acid immune sensors may be involved in interconnected pathways, likely influencing the efficiency of one another. Within this mini review, we discuss evidences for the crosstalk between PRRs and actors of the DDR. For this purpose, we mainly focus on cyclic GMP-AMP (cGAMP) synthetase (cGAS) and Interferon Gamma Inducible Protein 16 (IFI16), as major PRRs involved in the detection of aberrant nucleic acid species, and components of the DNA-dependent protein kinase (DNA-PK) complex, involved in the repair of double strand breaks that were recently described to qualify as potential PRRs. Finally, we discuss how the crosstalk between DDR and nucleic acid-associated Interferon responses cooperate for the fine-tuning of innate immune activation, and therefore dictate pathological outcomes. Understanding the molecular determinants of such cooperation will be paramount to the design of future therapeutic approaches.


Subject(s)
DNA Damage/immunology , Immunity, Innate , Nucleic Acids/immunology , Signal Transduction/immunology , Cytosol/immunology , Cytosol/metabolism , Cytosol/pathology , DNA Damage/genetics , Humans , Membrane Proteins/immunology , Receptors, Pattern Recognition/metabolism
4.
STAR Protoc ; 2(1): 100282, 2021 03 19.
Article in English | MEDLINE | ID: mdl-33532731

ABSTRACT

Cytosolic Ca2+ levels are maintained at low nanomolar concentrations, and disruption of Ca2+ homeostasis is associated with cell/tissue damage. Thus, methods have been developed to accurately assess cellular Ca2+ levels, each with intrinsic advantages and disadvantages. Here, we present in detail a ratiometric fluorometric method for cytosolic Ca2+ measurement in cultured melanoma cells using Fura 2-AM cell loading and fluorescence microscopy imaging. For complete details on the use and execution of this protocol, please refer to Esteves et al. (2020).


Subject(s)
Calcium Signaling , Calcium/metabolism , Cytosol/metabolism , Melanoma/metabolism , Microscopy, Fluorescence , Cell Line, Tumor , Cytosol/pathology , Humans , Melanoma/pathology
5.
STAR Protoc ; 2(1): 100323, 2021 03 19.
Article in English | MEDLINE | ID: mdl-33604582

ABSTRACT

To understand the role of the HIV-1 capsid in viral replication, we developed a protocol to biochemically track capsid in the nucleus during infection. To this end, we separated HIV-1-infected cells into nuclear and cytosolic fractions. Fractions were analyzed by western blotting for HIV-1 capsid content as well as for nuclear and cytosolic markers to assess the bona fide origin of the fractions. This protocol can be applied in both cycling and non-cycling human cells. For complete details on the use and execution of this protocol, please refer to Selyutina et al. (2020a).


Subject(s)
Capsid/metabolism , Cell Nucleus , Cytosol , HIV Infections , HIV-1/physiology , Virus Replication , A549 Cells , Animals , Cell Nucleus/metabolism , Cell Nucleus/pathology , Cell Nucleus/virology , Cytosol/metabolism , Cytosol/pathology , Cytosol/virology , Dogs , HEK293 Cells , HIV Infections/metabolism , HIV Infections/pathology , HeLa Cells , Humans
6.
J Pineal Res ; 70(1): e12677, 2021 Jan.
Article in English | MEDLINE | ID: mdl-32621295

ABSTRACT

This commentary reviews the concept of the circadian melatonin rhythm playing an essential role in reducing the development of diseases such as solid tumors which adopt cytosolic aerobic glycolysis (Warburg effect) to support their enhanced metabolism. Experimental data show that solid mammary tumors depend on aerobic glycolysis during the day but likely revert to mitochondrial oxidative phosphorylation at night for ATP production. This conversion of diseased cells during the day to a healthier phenotype at night occurs under control of the circulating melatonin rhythm. When the nocturnal melatonin rise is inhibited by light exposure at night, cancer cells function in the diseased state 24/7. The ability of melatonin to switch cancer cells as well as other diseased cells, for example, Alzheimer disease, fibrosis, hyperactivation of macrophages, etc, from aerobic glycolysis to mitochondrial oxidative phosphorylation may be a basic protective mechanism to reduce pathologies.


Subject(s)
Circadian Rhythm , Cytosol/metabolism , Glycolysis , Melatonin/metabolism , Mitochondria/metabolism , Neoplasms/metabolism , Oxidative Phosphorylation , Animals , Cytosol/pathology , Humans , Mitochondria/pathology , Neoplasms/pathology , Time Factors , Warburg Effect, Oncologic
7.
Cancer Sci ; 112(1): 133-143, 2021 Jan.
Article in English | MEDLINE | ID: mdl-33067904

ABSTRACT

To select the most efficient chemical to induce apoptosis in leukemia cells, a multidrug screen was applied on bone marrow mononuclear cells from chronic myeloid leukemia (CML) patients. Oprozomib (Cpd 21) was chosen for the subsequent experiments. The isobaric tags for relative and absolute quantitation (iTRAQ) was then performed to identify the responsible pathway relative to apoptosis and the results showed that endoplasmic reticulum (ER) chaperones were upregulated. Apoptosis was attributed to a joint effect of calcium leakage andPERK and IRE1α phosphorylation. The PERK branch was responsible for the first wave of cell death that occurred within 24 hours. The later wave of apoptosis was mediated by IRE1α, which transmit apoptotic signals through the ASK-JNK-BIM axis. Release of Ca2+ from ER into cytosol resulted in activation of calpain, which, in turn, cleaved caspase-12. Our data also explained the selective killing effects of oprozomib on CML cells, which relied on proteasome activity. The present study demonstrated that prolonged inhibition of proteasome to trigger unfolded protein response could be an alternative strategy for treating CML in light of tyrosine kinase inhibitors resistance.


Subject(s)
Cell Death/drug effects , Leukemia, Myelogenous, Chronic, BCR-ABL Positive/drug therapy , Oligopeptides/pharmacology , Unfolded Protein Response/drug effects , Apoptosis/drug effects , Apoptosis/genetics , Calcium/metabolism , Cell Death/genetics , Cell Line, Tumor , Cytosol/drug effects , Cytosol/pathology , Endoplasmic Reticulum/drug effects , Endoplasmic Reticulum/genetics , Humans , Leukemia, Myelogenous, Chronic, BCR-ABL Positive/genetics , Leukemia, Myelogenous, Chronic, BCR-ABL Positive/pathology , Phosphorylation/drug effects , Phosphorylation/genetics , Proteasome Endopeptidase Complex/drug effects , Proteasome Endopeptidase Complex/genetics , Protein Kinase Inhibitors/pharmacology , Signal Transduction/drug effects , Signal Transduction/genetics , Unfolded Protein Response/genetics , Up-Regulation/drug effects , Up-Regulation/genetics
8.
Nat Metab ; 2(11): 1212-1222, 2020 11.
Article in English | MEDLINE | ID: mdl-33077976

ABSTRACT

Enhanced growth and proliferation of cancer cells are accompanied by profound changes in cellular metabolism. These metabolic changes are also common under physiological conditions, and include increased glucose fermentation accompanied by elevated cytosolic pH (pHc)1,2. However, how these changes contribute to enhanced cell growth and proliferation is unclear. Here, we show that elevated pHc specifically orchestrates an E2F-dependent transcriptional programme to drive cell proliferation by promoting cyclin D1 expression. pHc-dependent transcription of cyclin D1 requires the transcription factors CREB1, ATF1 and ETS1, and the histone acetyltransferases p300 and CBP. Biochemical characterization revealed that the CREB1-p300/CBP interaction acts as a pH sensor and coincidence detector, integrating different mitotic signals to regulate cyclin D1 transcription. We also show that elevated pHc contributes to increased cyclin D1 expression in malignant pleural mesotheliomas (MPMs), and renders these cells hypersensitive to pharmacological reduction of pHc. Taken together, these data demonstrate that elevated pHc is a critical cellular signal regulating G1 progression, and provide a mechanism linking elevated pHc to oncogenic activation of cyclin D1 in MPMs, and possibly other cyclin D1~dependent tumours. Thus, an increase of pHc may represent a functionally important, early event in the aetiology of cancer that is amenable to therapeutic intervention.


Subject(s)
Cell Proliferation , Cyclin D1/biosynthesis , Cytosol/metabolism , Cell Line, Tumor , Computational Biology , Cyclin D1/genetics , Cytosol/pathology , Cytosol/physiology , E2F Transcription Factors/metabolism , Female , Gene Expression Regulation, Neoplastic/genetics , Humans , Hydrogen-Ion Concentration , Male , Mesothelioma/drug therapy , Mesothelioma/genetics , Mesothelioma/pathology , Metabolomics , Mitosis/physiology , Subcellular Fractions/metabolism , Transcription Factors
9.
J Clin Invest ; 130(6): 3124-3136, 2020 06 01.
Article in English | MEDLINE | ID: mdl-32182222

ABSTRACT

Chronic inflammation is a pathologic feature of neurodegeneration and aging; however, the mechanism regulating this process is not understood. Melatonin, an endogenous free radical scavenger synthesized by neuronal mitochondria, decreases with aging and neurodegeneration. We proposed that insufficient melatonin levels impair mitochondrial homeostasis, resulting in mitochondrial DNA (mtDNA) release and activation of cytosolic DNA-mediated inflammatory response in neurons. We found increased mitochondrial oxidative stress and decreased mitochondrial membrane potential, with higher mtDNA release in brain and primary cerebro-cortical neurons of melatonin-deficient aralkylamine N-acetyltransferase (AANAT) knockout mice. Cytosolic mtDNA activated the cGAS/STING/IRF3 pathway, stimulating inflammatory cytokine generation. We found that Huntington's disease mice had increased mtDNA release, cGAS activation, and inflammation, all inhibited by exogenous melatonin. Thus, we demonstrated that cytosolic mtDNA activated the inflammatory response in aging and neurodegeneration, a process modulated by melatonin. Furthermore, our data suggest that AANAT knockout mice are a model of accelerated aging.


Subject(s)
Aging/metabolism , Cytosol/metabolism , DNA, Mitochondrial/metabolism , Huntington Disease/metabolism , Melatonin/pharmacology , Neurons/metabolism , Signal Transduction/drug effects , Aging/genetics , Aging/pathology , Animals , Cytosol/pathology , DNA, Mitochondrial/genetics , Female , Humans , Huntington Disease/genetics , Huntington Disease/pathology , Male , Mice , Mice, Knockout , Neurons/pathology
10.
J Virol ; 94(11)2020 05 18.
Article in English | MEDLINE | ID: mdl-32161173

ABSTRACT

The nonenveloped polyomavirus simian virus 40 (SV40) must penetrate the host endoplasmic reticulum (ER) membrane to enter the cytosol in order to promote infection. How this is accomplished is not entirely clear. Here, we demonstrate that the cytosolic chaperone Ubiquilin4 (Ubqln4) binds directly to the ER membrane J proteins B12 and B14. Strategically localized at the ER-cytosol interface, Ubqln4 captures SV40 emerging from the ER, thereby facilitating escape of the virus from the ER into the cytosol, which leads to infection. Strikingly, Ubqln4 engages the J proteins in a J-domain-independent manner, in contrast to the previously reported Hsc70-Hsp105-SGTA-Bag2 cytosolic complex that also mediates SV40 ER-to-cytosol transport. Our results also reveal that the H domain and STI1 motif (1-2) of Ubqln4 support J protein binding, essential for SV40 infection. Together, these data further clarify the molecular basis by which a nonenveloped virus escapes a host membrane during infectious entry.IMPORTANCE How a nonenveloped virus escapes from a host membrane to promote infection remains enigmatic. In the case of the nonenveloped polyomavirus SV40, penetration of the ER membrane to reach the cytosol is a decisive virus infection step. In this study, we found a new host factor called Ubqln4 that facilitates escape of SV40 from the ER into the cytosol, thereby providing a path for the virus to enter the nucleus to cause infection.


Subject(s)
Carrier Proteins/metabolism , Cytosol/metabolism , Endoplasmic Reticulum/metabolism , Nuclear Proteins/metabolism , Polyomavirus Infections/metabolism , Simian virus 40/metabolism , Amino Acid Motifs , Biological Transport, Active/genetics , Carrier Proteins/genetics , Cell Line , Cytosol/pathology , Cytosol/virology , Endoplasmic Reticulum/genetics , Endoplasmic Reticulum/pathology , Endoplasmic Reticulum/virology , HSP70 Heat-Shock Proteins/genetics , HSP70 Heat-Shock Proteins/metabolism , Humans , Molecular Chaperones/genetics , Molecular Chaperones/metabolism , Multiprotein Complexes/genetics , Multiprotein Complexes/metabolism , Nuclear Proteins/genetics , Polyomavirus Infections/genetics , Polyomavirus Infections/pathology , Protein Domains , Simian virus 40/genetics
11.
Nature ; 579(7799): 433-437, 2020 03.
Article in English | MEDLINE | ID: mdl-32132706

ABSTRACT

Mitochondrial fidelity is tightly linked to overall cellular homeostasis and is compromised in ageing and various pathologies1-3. Mitochondrial malfunction needs to be relayed to the cytosol, where an integrated stress response is triggered by the phosphorylation of eukaryotic translation initiation factor 2α (eIF2α) in mammalian cells4,5. eIF2α phosphorylation is mediated by the four eIF2α kinases GCN2, HRI, PERK and PKR, which are activated by diverse types of cellular stress6. However, the machinery that communicates mitochondrial perturbation to the cytosol to trigger the integrated stress response remains unknown1,2,7. Here we combine genome engineering and haploid genetics to unbiasedly identify genes that affect the induction of C/EBP homologous protein (CHOP), a key factor in the integrated stress response. We show that the mitochondrial protease OMA1 and the poorly characterized protein DELE1, together with HRI, constitute the missing pathway that is triggered by mitochondrial stress. Mechanistically, stress-induced activation of OMA1 causes DELE1 to be cleaved into a short form that accumulates in the cytosol, where it binds to and activates HRI via its C-terminal portion. Obstruction of this pathway can be beneficial or adverse depending on the type of mitochondrial perturbation. In addition to the core pathway components, our comparative genetic screening strategy identifies a suite of additional regulators. Together, these findings could be used to inform future strategies to modulate the cellular response to mitochondrial dysfunction in the context of human disease.


Subject(s)
Cytosol/metabolism , Cytosol/pathology , Mitochondria/metabolism , Mitochondria/pathology , Mitochondrial Proteins/metabolism , Enzyme Activation , Eukaryotic Initiation Factor-2/metabolism , Genome, Human/genetics , Humans , Metalloendopeptidases/metabolism , Mitochondria/enzymology , Phosphorylation , Protein Binding , Stress, Physiological , Transcription Factor CHOP/metabolism , eIF-2 Kinase/metabolism
12.
Cancer Res ; 80(5): 1143-1155, 2020 03 01.
Article in English | MEDLINE | ID: mdl-31932456

ABSTRACT

Considerable metabolic reprogramming has been observed in a conserved manner across multiple cancer types, but their true causes remain elusive. We present an analysis of around 50 such reprogrammed metabolisms (RM) including the Warburg effect, nucleotide de novo synthesis, and sialic acid biosynthesis in cancer. Analyses of the biochemical reactions conducted by these RMs, coupled with gene expression data of their catalyzing enzymes, in 7,011 tissues of 14 cancer types, revealed that all RMs produce more H+ than their original metabolisms. These data strongly support a model that these RMs are induced or selected to neutralize a persistent intracellular alkaline stress due to chronic inflammation and local iron overload. To sustain these RMs for survival, cells must find metabolic exits for the nonproton products of these RMs in a continuous manner, some of which pose major challenges, such as nucleotides and sialic acids, because they are electrically charged. This analysis strongly suggests that continuous cell division and other cancerous behaviors are ways for the affected cells to remove such products in a timely and sustained manner. As supporting evidence, this model can offer simple and natural explanations to a range of long-standing open questions in cancer research including the cause of the Warburg effect. SIGNIFICANCE: Inhibiting acidifying metabolic reprogramming could be a novel strategy for treating cancer.


Subject(s)
Energy Metabolism , Glycolysis , Mitochondria/pathology , Neoplasms/pathology , Protons , Cell Proliferation , Cell Survival , Cytosol/pathology , Female , Humans , Male , Metabolic Networks and Pathways , N-Acetylneuraminic Acid/biosynthesis , Nucleotides/biosynthesis , RNA-Seq
13.
Neurochem Res ; 45(6): 1354-1364, 2020 Jun.
Article in English | MEDLINE | ID: mdl-31280399

ABSTRACT

Motor neuron disease (MND) is a progressive neurodegenerative disease with no effective treatment. One of the principal pathological hallmarks is the deposition of TAR DNA binding protein 43 (TDP-43) in cytoplasmic inclusions. TDP-43 aggregation occurs in both familial and sporadic MND; however, the mechanism of endogenous TDP-43 aggregation in disease is incompletely understood. This study focused on the induction of cytoplasmic accumulation of endogenous TDP-43 in the motor neuronal cell line NSC-34. The endoplasmic reticulum (ER) stressor tunicamycin induced casein kinase 1 (CK1)-dependent cytoplasmic accumulation of endogenous TDP-43 in differentiated NSC-34 cells, as seen by immunocytochemistry. Immunoblotting showed that induction of ER stress had no effect on abundance of TDP-43 or phosphorylated TDP-43 in the NP-40/RIPA soluble fraction. However, there were significant increases in abundance of TDP-43 and phosphorylated TDP-43 in the NP-40/RIPA-insoluble, urea-soluble fraction, including high molecular weight species. In all cases, these increases were lowered by CK1 inhibition. Thus ER stress signalling, as induced by tunicamycin, causes CK1-dependent phosphorylation of TDP-43 and its consequent cytosolic accumulation.


Subject(s)
Casein Kinase I/biosynthesis , Cytosol/metabolism , DNA-Binding Proteins/metabolism , Endoplasmic Reticulum Stress/physiology , Inclusion Bodies/metabolism , Motor Neurons/metabolism , Anti-Bacterial Agents/toxicity , Cell Line , Cell Survival/drug effects , Cell Survival/physiology , Cytosol/drug effects , Cytosol/pathology , Dose-Response Relationship, Drug , Endoplasmic Reticulum Stress/drug effects , Enzyme Induction/drug effects , Enzyme Induction/physiology , Humans , Inclusion Bodies/drug effects , Inclusion Bodies/pathology , Motor Neuron Disease/chemically induced , Motor Neuron Disease/metabolism , Motor Neuron Disease/pathology , Motor Neurons/drug effects , Motor Neurons/pathology , Signal Transduction/drug effects , Signal Transduction/physiology , Tunicamycin/toxicity
14.
Circulation ; 141(1): 42-66, 2020 01 07.
Article in English | MEDLINE | ID: mdl-31887080

ABSTRACT

BACKGROUND: Sporadic aortic aneurysm and dissection (AAD), caused by progressive aortic smooth muscle cell (SMC) loss and extracellular matrix degradation, is a highly lethal condition. Identifying mechanisms that drive aortic degeneration is a crucial step in developing an effective pharmacologic treatment to prevent disease progression. Recent evidence has indicated that cytosolic DNA and abnormal activation of the cytosolic DNA sensing adaptor STING (stimulator of interferon genes) play a critical role in vascular inflammation and destruction. Here, we examined the involvement of this mechanism in aortic degeneration and sporadic AAD formation. METHODS: The presence of cytosolic DNA in aortic cells and activation of the STING pathway were examined in aortic tissues from patients with sporadic ascending thoracic AAD. The role of STING in AAD development was evaluated in Sting-deficient (Stinggt/gt) mice in a sporadic AAD model induced by challenging mice with a combination of a high-fat diet and angiotensin II. We also examined the direct effects of STING on SMC death and macrophage activation in vitro. RESULTS: In human sporadic AAD tissues, we observed the presence of cytosolic DNA in SMCs and macrophages and significant activation of the STING pathway. In the sporadic AAD model, Stinggt/gt mice showed significant reductions in challenge-induced aortic enlargement, dissection, and rupture in both the thoracic and abdominal aortic regions. Single-cell transcriptome analysis revealed that aortic challenge in wild-type mice induced the DNA damage response, the inflammatory response, dedifferentiation and cell death in SMCs, and matrix metalloproteinase expression in macrophages. These changes were attenuated in challenged Stinggt/gt mice. Mechanistically, nuclear and mitochondrial DNA damage in SMCs and the subsequent leak of DNA to the cytosol activated STING signaling, which induced cell death through apoptosis and necroptosis. In addition, DNA from damaged SMCs was engulfed by macrophages in which it activated STING and its target interferon regulatory factor 3, which directly induced matrix metalloproteinase-9 expression. We also found that pharmacologically inhibiting STING activation partially prevented AAD development. CONCLUSIONS: Our findings indicate that the presence of cytosolic DNA and subsequent activation of cytosolic DNA sensing adaptor STING signaling represent a key mechanism in aortic degeneration and that targeting STING may prevent sporadic AAD development.


Subject(s)
Aortic Dissection/metabolism , Aortic Rupture/metabolism , Cytosol/metabolism , DNA/metabolism , Membrane Proteins/metabolism , Signal Transduction , Aortic Dissection/genetics , Aortic Dissection/pathology , Animals , Aortic Rupture/genetics , Aortic Rupture/pathology , Cytosol/pathology , DNA/genetics , Female , Male , Membrane Proteins/genetics , Mice , Mice, Knockout
15.
Oncogene ; 39(1): 164-175, 2020 01.
Article in English | MEDLINE | ID: mdl-31462712

ABSTRACT

Citrin, encoded by SLC25A13 gene, is an inner mitochondrial transporter that is part of the malate-aspartate shuttle, which regulates the NAD+/NADH ratio between the cytosol and mitochondria. Citrullinemia type II (CTLN-II) is an inherited disorder caused by germline mutations in SLC25A13, manifesting clinically in growth failure that can be alleviated by dietary restriction of carbohydrates. The association of citrin with glycolysis and NAD+/NADH ratio led us to hypothesize that it may play a role in carcinogenesis. Indeed, we find that citrin is upregulated in multiple cancer types and is essential for supplementing NAD+ for glycolysis and NADH for oxidative phosphorylation. Consequently, citrin deficiency associates with autophagy, whereas its overexpression in cancer cells increases energy production and cancer invasion. Furthermore, based on the human deleterious mutations in citrin, we found a potential inhibitor of citrin that restricts cancerous phenotypes in cells. Collectively, our findings suggest that targeting citrin may be of benefit for cancer therapy.


Subject(s)
Carcinogenesis/genetics , Mitochondria/genetics , Mitochondrial Membrane Transport Proteins/genetics , Neoplasms/genetics , Carbohydrates/genetics , Citrullinemia/genetics , Citrullinemia/metabolism , Cytosol/metabolism , Cytosol/pathology , Gene Expression Regulation, Neoplastic/genetics , Germ-Line Mutation/genetics , Glutamates/pharmacology , Glutamic Acid/analogs & derivatives , Glutamic Acid/pharmacology , Glycolysis/genetics , Humans , Mitochondria/metabolism , Mitochondria/pathology , Mitochondrial Membrane Transport Proteins/antagonists & inhibitors , Molecular Targeted Therapy , Neoplasms/drug therapy , Neoplasms/pathology , Oxidative Phosphorylation/drug effects
16.
Cell Rep ; 29(12): 3958-3973.e7, 2019 12 17.
Article in English | MEDLINE | ID: mdl-31851926

ABSTRACT

Salmonella is a human and animal pathogen that causes gastro-enteric diseases. The key to Salmonella infection is its entry into intestinal epithelial cells, where the bacterium resides within a Salmonella-containing vacuole (SCV). Salmonella entry also induces the formation of empty macropinosomes, distinct from the SCV, in the vicinity of the entering bacteria. A few minutes after its formation, the SCV increases in size through fusions with the surrounding macropinosomes. Salmonella also induces membrane tubules that emanate from the SCV and lead to SCV shrinkage. Here, we show that these antipodal events are utilized by Salmonella to either establish a vacuolar niche or to be released into the cytosol by SCV rupture. We identify the molecular machinery underlying dynamic SCV growth and shrinkage. In particular, the SNARE proteins SNAP25 and STX4 participate in SCV inflation by fusion with macropinosomes. Thus, host compartment size control emerges as a pathogen strategy for intracellular niche regulation.


Subject(s)
Cytosol/pathology , Qa-SNARE Proteins/metabolism , Salmonella Infections/pathology , Salmonella typhimurium/growth & development , Synaptosomal-Associated Protein 25/metabolism , Vacuoles/pathology , Caco-2 Cells , Cytosol/metabolism , Cytosol/microbiology , HeLa Cells , Humans , Qa-SNARE Proteins/genetics , Salmonella Infections/metabolism , Salmonella Infections/microbiology , Salmonella typhimurium/metabolism , Synaptosomal-Associated Protein 25/genetics , Vacuoles/metabolism , Vacuoles/microbiology
17.
Cell Death Dis ; 10(11): 857, 2019 11 12.
Article in English | MEDLINE | ID: mdl-31719530

ABSTRACT

Parkinson's disease (PD), the second most common neurodegenerative disorder, is characterized by dopaminergic neuronal loss that initiates in the substantia nigra pars compacta and by the formation of intracellular inclusions mainly constituted by aberrant α-synuclein (α-syn) deposits known as Lewy bodies. Most cases of PD are sporadic, but about 10% are familial, among them those caused by mutations in SNCA gene have an autosomal dominant transmission. SNCA encodes α-syn, a small 140-amino acids protein that, under physiological conditions, is mainly localized at the presynaptic terminals. It is prevalently cytosolic, but its presence has been reported in the nucleus, in the mitochondria and, more recently, in the mitochondria-associated ER membranes (MAMs). Whether different cellular localizations may reflect specific α-syn activities is presently unclear and its action at mitochondrial level is still a matter of debate. Mounting evidence supports a role for α-syn in several mitochondria-derived activities, among which maintenance of mitochondrial morphology and modulation of complex I and ATP synthase activity. α-syn has been proposed to localize at the outer membrane (OMM), in the intermembrane space (IMS), at the inner membrane (IMM) and in the mitochondrial matrix, but a clear and comparative analysis of the sub-mitochondrial localization of WT and mutant α-syn is missing. Furthermore, the reasons for this spread sub-mitochondrial localization under physiological and pathological circumstances remain elusive. In this context, we decided to selectively monitor the sub-mitochondrial distribution of the WT and PD-related α-syn mutants A53T and A30P by taking advantage from a bimolecular fluorescence complementation (BiFC) approach. We also investigated whether cell stress could trigger α-syn translocation within the different mitochondrial sub-compartments and whether PD-related mutations could impinge on it. Interestingly, the artificial targeting of α-syn WT (but not of the mutants) to the mitochondrial matrix impacts on ATP production, suggesting a potential role within this compartment.


Subject(s)
Dopaminergic Neurons/metabolism , Mitochondria/genetics , Parkinson Disease/metabolism , alpha-Synuclein/genetics , Adenosine Triphosphate/biosynthesis , Adenosine Triphosphate/genetics , Cytosol/metabolism , Cytosol/pathology , Dopamine/genetics , Dopamine/metabolism , Dopaminergic Neurons/pathology , Gene Expression/genetics , Humans , Mitochondria/metabolism , Mitochondria/pathology , Mitochondrial Proton-Translocating ATPases/genetics , Mitochondrial Proton-Translocating ATPases/metabolism , Mutant Proteins/genetics , Parkinson Disease/pathology , Pars Compacta/metabolism , Pars Compacta/pathology , Presynaptic Terminals/metabolism
18.
Anal Chem ; 91(14): 8772-8776, 2019 07 16.
Article in English | MEDLINE | ID: mdl-31184112

ABSTRACT

A multicellular tumor aggregate, known as a spheroid, is an indispensable tool to study cancer biology. Owing to its three-dimensional organization, a spheroid exhibits an inherent gradient of nutrients, oxygen, and metabolites within itself. The spheroid provides culture conditions that resemble the microenvironment of certain cancer cells and causes these cells to acquire characteristics relevant to tumors in our body. However, site-specific gene expression analysis in an intact spheroid with single-cell resolution has not been explored. Recently, some types of electrochemical syringes were developed to extract cellular materials from living single cells for transcriptomic analysis. Here, we investigated whether an electrochemical syringe could be used to evaluate site-specific gene expression in a spheroid. A small amount of cytosol (roughly 540-1480 fL, less than the volume of a single cell) was successfully collected from the first, second, and third layers of the spheroid using an electrochemical syringe without causing damage to the spheroid architecture. We found that the CCNB1 and CCNA2 expression levels were different between the surface and the average of the entire spheroid, indicating that there are heterogeneous cellular functions across different regions of the spheroid. This method provides opportunities to improve our understanding of spatial gene expression of single cells in a three-dimensional environment.


Subject(s)
Cytosol/pathology , Neoplasms/pathology , Single-Cell Analysis , Specimen Handling , Spheroids, Cellular/pathology , Cytosol/metabolism , Electrochemical Techniques/instrumentation , Equipment Design , Gene Expression Regulation, Neoplastic , Humans , MCF-7 Cells , Neoplasms/genetics , Single-Cell Analysis/instrumentation , Specimen Handling/instrumentation , Spheroids, Cellular/metabolism , Syringes , Tumor Microenvironment
19.
Int J Mol Sci ; 20(3)2019 Feb 01.
Article in English | MEDLINE | ID: mdl-30717258

ABSTRACT

Primary liver cancer comprises a diverse group of liver tumors. The heterogeneity of these tumors is seen as one of the obstacles to finding an effective therapy. The Hippo pathway, with its downstream transcriptional co-activator Yes-associated protein (YAP) and transcriptional co-activator with PDZ-binding motif (TAZ), has a decisive role in the carcinogenesis of primary liver cancer. Therefore, we examined the expression pattern of YAP and TAZ in 141 patients with hepatocellular carcinoma keratin 19 positive (HCC K19⁺), hepatocellular carcinoma keratin 19 negative (HCC K19-), combined hepatocellular⁻cholangiocarcinoma carcinoma (cHCC-CCA), or cholangiocarcinoma (CCA). All cHCC-CCA and CCA patients showed high expression levels for YAP and TAZ, while only some patients of the HCC group were positive. Notably, we found that a histoscore of both markers is useful in the challenging diagnosis of cHCC-CCA. In addition, positivity for YAP and TAZ was observed in the hepatocellular and cholangiocellular components of cHCC-CCA, which suggests a single cell origin in cHCC-CCA. Within the K19- HCC group, our results demonstrate that the expression of YAP is a statistically significant predictor of poor prognosis when observed in the cytoplasm. Nuclear expression of TAZ is an even more specific and independent predictor of poor disease-free survival and overall survival of K19- HCC patients. Our results thus identify different levels of YAP/TAZ expression in various liver cancers that can be used for diagnostics.


Subject(s)
Adaptor Proteins, Signal Transducing/genetics , Bile Duct Neoplasms/genetics , Biomarkers, Tumor/genetics , Carcinoma, Hepatocellular/genetics , Cholangiocarcinoma/genetics , Gene Expression Regulation, Neoplastic , Intracellular Signaling Peptides and Proteins/genetics , Liver Neoplasms/genetics , Phosphoproteins/genetics , Adaptor Proteins, Signal Transducing/metabolism , Aged , Bile Duct Neoplasms/diagnosis , Bile Duct Neoplasms/mortality , Bile Duct Neoplasms/pathology , Biomarkers, Tumor/metabolism , Carcinogenesis/genetics , Carcinogenesis/metabolism , Carcinogenesis/pathology , Carcinoma, Hepatocellular/diagnosis , Carcinoma, Hepatocellular/mortality , Carcinoma, Hepatocellular/pathology , Cell Nucleus/metabolism , Cell Nucleus/pathology , Cholangiocarcinoma/diagnosis , Cholangiocarcinoma/mortality , Cholangiocarcinoma/pathology , Cytosol/metabolism , Cytosol/pathology , Female , Genetic Heterogeneity , Humans , Intracellular Signaling Peptides and Proteins/metabolism , Kaplan-Meier Estimate , Keratin-19/deficiency , Keratin-19/genetics , Ki-67 Antigen/genetics , Ki-67 Antigen/metabolism , Liver Neoplasms/diagnosis , Liver Neoplasms/mortality , Liver Neoplasms/pathology , Male , Middle Aged , Phosphoproteins/metabolism , Prognosis , Proportional Hazards Models , Retrospective Studies , Signal Transduction , Trans-Activators , Transcription Factors , Transcriptional Coactivator with PDZ-Binding Motif Proteins , YAP-Signaling Proteins
20.
Respir Physiol Neurobiol ; 261: 15-23, 2019 03.
Article in English | MEDLINE | ID: mdl-30590202

ABSTRACT

Spinal chloride-dependent synaptic inhibition is critical in regulating breathing and requires neuronal chloride gradients established by cation-chloride cotransporters Na+-K+-2Cl- (NKCC1) and K+-Cl- (KCC2). Spinal transection disrupts NKCC1/KCC2 balance, diminishing chloride gradients in neurons below injury, contributing to spasticity and chronic pain. It is not known if similar disruptions in NKCC1/KCC2 balance occur in respiratory motor neurons after incomplete cervical contusion (C2SC). We hypothesized that C2SC disrupts NKCC1/KCC2 balance in phrenic motor neurons. NKCC1 and KCC2 immunoreactivity was assessed in CtB-positive phrenic motor neurons. Five weeks post-C2SC: 1) neither membrane-bound nor cytosolic NKCC1 expression were significantly changed, although the membrane/cytosolic ratio increased, consistent with net chloride influx; and 2) both membrane and cytosolic KCC2 expression increased, although the membrane/cytosolic ratio decreased, consistent with net chloride efflux. Thus, contrary to our original hypothesis, complex shifts in NKCC1/KCC2 balance occur post-C2SC. The functional significance of these changes remains unclear.


Subject(s)
Cervical Cord/injuries , Contusions/metabolism , Motor Neurons/metabolism , Phrenic Nerve/metabolism , Solute Carrier Family 12, Member 2/metabolism , Symporters/metabolism , Animals , Cell Membrane/metabolism , Cell Membrane/pathology , Cervical Cord/metabolism , Cervical Cord/pathology , Cervical Vertebrae , Contusions/pathology , Cytosol/metabolism , Cytosol/pathology , Disease Models, Animal , Male , Motor Neurons/pathology , Phrenic Nerve/pathology , Random Allocation , Rats, Inbred Lew , Spinal Cord Injuries/metabolism , K Cl- Cotransporters
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