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1.
J Radiat Res ; 62(5): 861-867, 2021 Sep 13.
Article in English | MEDLINE | ID: mdl-34370027

ABSTRACT

Radon inhalation decreases the level of lipid peroxide (LPO); this is attributed to the activation of antioxidative functions. This activation contributes to the beneficial effects of radon therapy, but there are no studies on the risks of radon therapy, such as DNA damage. We evaluated the effect of radon inhalation on DNA damage caused by oxidative stress and explored the underlying mechanisms. Mice were exposed to radon inhalation at concentrations of 2 or 20 kBq/m3 (for one, three, or 10 days). The 8-hydroxy-2'-deoxyguanosine (8-OHdG) levels decreased in the brains of mice that inhaled 20 kBq/m3 radon for three days and in the kidneys of mice that inhaled 2 or 20 kBq/m3 radon for one, three or 10 days. The 8-OHdG levels in the small intestine decreased by approximately 20-40% (2 kBq/m3 for three days or 20 kBq/m3 for one, three or 10 days), but there were no significant differences in the 8-OHdG levels between mice that inhaled a sham treatment and those that inhaled radon. There was no significant change in the levels of 8-oxoguanine DNA glycosylase, which plays an important role in DNA repair. However, the level of Mn-superoxide dismutase (SOD) increased by 15-60% and 15-45% in the small intestine and kidney, respectively, following radon inhalation. These results suggest that Mn-SOD probably plays an important role in the inhibition of oxidative DNA damage.


Subject(s)
DNA Damage/radiation effects , Oxidative Stress/radiation effects , Radon/pharmacology , Superoxide Dismutase/physiology , 8-Hydroxy-2'-Deoxyguanosine/analysis , Administration, Inhalation , Animals , Brain Chemistry/radiation effects , DNA Glycosylases/analysis , Enzyme Induction/radiation effects , Intestine, Small/chemistry , Intestine, Small/radiation effects , Kidney/chemistry , Kidney/radiation effects , Lipid Peroxidation/radiation effects , Male , Mice , Mice, Inbred BALB C , Organ Specificity , Oxidation-Reduction , Radon/administration & dosage , Radon/therapeutic use , Superoxide Dismutase/biosynthesis , Superoxide Dismutase/genetics
2.
Clin Transl Gastroenterol ; 12(5): e00353, 2021 05 17.
Article in English | MEDLINE | ID: mdl-33999013

ABSTRACT

INTRODUCTION: Familial adenomatous polyposis (FAP) is a hereditary colorectal cancer (CRC) syndrome characterized by accelerated adenoma development due to inherited (or de novo) mutations in the APC regulator of WNT signaling pathway (APC) gene. The mechanism underlying this accelerated polyp development in subjects with FAP has not been defined. Given that LGR5+ stem cells drive crypt cell proliferation, we hypothesized that FAP crypts would demonstrate aberrant leucine-rich repeat-containing G-protein-coupled receptor 5 (LGR5) staining patterns. METHODS: Biopsies were taken from 11 healthy subjects, 7 subjects with Lynch syndrome, 4 subjects with FAP, and 1 subject with MUTYH-associated polyposis syndrome during routine screening or surveillance colonoscopy. Crypt staining was evaluated by immunohistochemistry of paraffin-embedded tissue sections. Stem cell numbers were estimated by immunofluorescence staining of isolated crypts using antibodies against LGR5 and other proteins. RESULTS: Subjects with FAP exhibited a greater number of LGR5+ stem cells in their crypts than healthy subjects and subjects with Lynch syndrome and MUTYH-associated polyposis syndrome. Most crypts of subjects with FAP harbored LGR5+ cells located above the lower third of the crypts. DISCUSSION: These findings support a model in which inactivation of one copy of APC leads to increased numbers of LGR5+ stem cells, many of which are ectopic, in colon crypts of subjects with FAP. Overabundant and ectopic LGR5+ stem cells could lead to an expanded proliferative zone of dividing cells more likely to develop mutations that would contribute to the accelerated adenoma development observed in FAP.


Subject(s)
Adenomatous Polyposis Coli/pathology , Colon/pathology , Receptors, G-Protein-Coupled/analysis , Stem Cells/pathology , Adult , Aged , Biopsy , Case-Control Studies , Cell Proliferation , Colorectal Neoplasms, Hereditary Nonpolyposis/pathology , DNA Glycosylases/analysis , Female , Fluorescent Antibody Technique , Humans , Immunohistochemistry , Male , Microscopy, Confocal , Middle Aged , Young Adult
3.
Bull Cancer ; 107(5): 586-600, 2020 May.
Article in French | MEDLINE | ID: mdl-32362383

ABSTRACT

MUTYH-associated polyposis (MUTYH-associated polyposis, MAP) is an autosomal recessive inheritance disorder related to bi-allelic constitutional pathogenic variants of the MUTYH gene which was first described in 2002. In 2011, a group of French experts composed of clinicians and biologists, performed a summary of the available data on this condition and drew up recommendations concerning the indications and the modalities of molecular analysis of the MUTYH gene in index cases and their relatives, as well as the management of affected individuals. In view of recent developments, some recommendations have become obsolete, in particular with regard to the molecular analysis strategy since MUTYH gene has been recently included in a consensus panel of 14 genes predisposing to colorectal cancer. This led us to revise all the points of the previous expertise. We report here the revised version of this work which successively considers the phenotype and the tumor risks associated with this genotype, the differential diagnoses, the indication criteria and the strategy of the molecular analysis and the recommendations for the management of affected individuals. We also discuss the phenotype and the tumor risks associated with mono-allelic pathogenic variants of MUTYH gene.


Subject(s)
Adenomatous Polyposis Coli/genetics , DNA Glycosylases/genetics , Adenomatous Polyposis Coli/diagnosis , Adenomatous Polyposis Coli/therapy , Alleles , Colorectal Neoplasms/diagnosis , Colorectal Neoplasms/genetics , Colorectal Neoplasms/therapy , DNA Glycosylases/analysis , Diagnosis, Differential , Digestive System Neoplasms/genetics , Family Health , France , Genetic Predisposition to Disease , Humans , Neoplasms/genetics , Phenotype
4.
Anticancer Res ; 39(6): 3241-3248, 2019 Jun.
Article in English | MEDLINE | ID: mdl-31177174

ABSTRACT

BACKGROUND/AIM: The effects of oxidative stress on various carcinomas were reported in previous studies, but those in intrahepatic cholangiocarcinoma (ICC) have not been fully elucidated. The purpose of this study was, thus, to reveal the effects of oxidative DNA damage and repair enzymes on ICC. MATERIALS AND METHODS: The levels of 8-hydroxydeoxyguanosine (8-OHdG) and 8-OHdG DNA glycosylase (OGG1) were immunohistochemically evaluated in specimens resected from 63 patients with ICC. RESULTS: Low OGG1 expression was related to tumour depth T4 (p=0.04), venous invasion (p=0.0005), lymphatic vessel invasion (p=0.03), and perineural invasion (p=0.03). Compared to the high-OGG1-expression group, patients with low OGG1 expression had a significantly poorer prognosis (overall survival: p=0.04, recurrence-free survival: p=0.02). Unlike for OGG1, the expression levels of 8-OHdG showed no association with prognosis. CONCLUSION: Oxidative DNA damage and DNA repair enzymes may be closely related to ICC progression.


Subject(s)
Bile Duct Neoplasms/enzymology , Biomarkers, Tumor/analysis , Cholangiocarcinoma/enzymology , DNA Glycosylases/analysis , DNA Repair , 8-Hydroxy-2'-Deoxyguanosine , Adult , Aged , Aged, 80 and over , Bile Duct Neoplasms/mortality , Bile Duct Neoplasms/pathology , Bile Duct Neoplasms/therapy , Cholangiocarcinoma/mortality , Cholangiocarcinoma/pathology , Cholangiocarcinoma/therapy , DNA Damage , Deoxyguanosine/analogs & derivatives , Deoxyguanosine/analysis , Disease Progression , Female , Humans , Immunohistochemistry , Male , Middle Aged , Oxidative Stress , Progression-Free Survival , Retrospective Studies , Time Factors
5.
Mikrochim Acta ; 186(2): 85, 2019 01 09.
Article in English | MEDLINE | ID: mdl-30627800

ABSTRACT

A multifunctional DNA nanocage containing CdTe quantum dots (QDs) was prepared. It was applied to the fluorometric detection of human 8-oxoG DNA glycosylase 1 (hOGG1) by exonuclease-assisted cycling amplification technique. When loaded with the cancer drug doxorubicin (Dox), the nanocage is also a versatile probe for fluorescence imaging of cancer cells, and drug delivery to them. The presence of hOGG1 leads to the division of DNA HP1 (containing 8-oxo-dG) and formation of DNA fragments 1 and 2. Then, HP2 is added to hybridize with DNA 1 and produced lots of trigger DNA (containing nucleolin aptamer) by Exo III-aided cycling amplification. The DNA nanocage was fabricated by linking the trigger DNA to multiple specific DNA strands, and the fluorescent CdTe QDs were further conjugated to the DNA nanocage for sensitive detection of hOGG1 activity. After Dox is incorporated into the DNA nanocage, the fluorescence of Dox is turned off. Once the DNA nanocage enters the MCF-7 cells, the Dox is released and its fluorescence (measured at excitation/emission wavelengths of 480/560 nm) is turned on. The DNA nanocage containing fluorescent QDs and Dox was successfully applied to the fluorometric detection of hOGG1, fluorescence imaging, and therapy of cancer cells, which has great promise in clinical application and treatment of cancer. Graphical abstract A multifunctional DNA nanocage containing CdTe quantum dots and acting as a signalling probe was prepared. It was applied to fluorometric determination of human 8-oxoG DNA glycosylase 1 using cycling amplification technique. It also enables drug delivery to cancer cells if loaded with doxorubicin.


Subject(s)
DNA Glycosylases/analysis , Doxorubicin/analysis , Drug Delivery Systems/methods , Fluorometry/methods , Quantum Dots/chemistry , Cadmium Compounds/chemistry , DNA/chemistry , Diagnostic Imaging/methods , Doxorubicin/administration & dosage , Fluorescence , Fluorescent Dyes/chemistry , Humans , Neoplasms/diagnostic imaging , Neoplasms/drug therapy , Neoplasms/pathology , Tellurium/chemistry
6.
ACS Sens ; 3(12): 2675-2683, 2018 12 28.
Article in English | MEDLINE | ID: mdl-30460848

ABSTRACT

Molecular self-replication is a fundamental function of all living organisms with the capability of templating and catalyzing its own synthesis, and it plays important roles in prebiotic chemical evolution and effective synthetic machineries. However, the construction of the self-replication system in vitro remains a great challenge and its application for biosensing is rare. Here, we demonstrate for the first time the construction of an in vitro enzymatic nucleic acid self-replication system and its application for amplified sensing of human 8-oxoguanine DNA glycosylase (hOGG1) based on autocatalytic self-replication-driven cascaded recycling amplification. In this strategy, hOGG1 excises 8-oxoguanine (8-oxoG) to unfold the hairpin substrate, activating the autonomous biocatalytic process with molecular beacons (MBs) as both the fuels for producing nucleic acid templates and the generators for signal output, leading to the continuous replication of biocatalytic nucleic acid templates and the repeated cleavage of MBs for an enhanced fluorescence signal. This strategy exhibits an extremely low detection limit of 4.3 × 10-7 U/µL and a large dynamic range of 5 orders of magnitude from 1 × 10-6 to 0.05 U/µL. Importantly, it can be applied for the detection of enzyme kinetic parameters, the screening of hOGG1 inhibitors, and the quantification of hOGG1 activity in even 1 single lung cancer cell, providing a new approach for biomedical research and clinical diagnosis.


Subject(s)
DNA Glycosylases/analysis , DNA/chemistry , Enzyme Assays/methods , Nucleic Acid Amplification Techniques/methods , A549 Cells , Biosensing Techniques/methods , Cadmium Chloride/chemistry , DNA/genetics , DNA Glycosylases/antagonists & inhibitors , DNA-(Apurinic or Apyrimidinic Site) Lyase/chemistry , Deoxyribonucleases, Type II Site-Specific/chemistry , Enzyme Inhibitors/chemistry , Flavobacterium/enzymology , Humans , Limit of Detection , Nucleic Acid Hybridization
7.
Chem Commun (Camb) ; 54(46): 5839-5842, 2018 Jun 05.
Article in English | MEDLINE | ID: mdl-29707704

ABSTRACT

We combine single-molecule detection with magnetic separation for simultaneous measurement of human 8-oxoG DNA glycosylase 1 (hOGG1) and uracil DNA glycosylase (UDG) based on excision repair-initiated endonuclease IV (Endo IV)-assisted signal amplification. This method can sensitively detect multiple DNA glycosylases, and it can be further applied for the simultaneous measurement of enzyme kinetic parameters and screening of both hOGG1 and UDG inhibitors.


Subject(s)
Biosensing Techniques/methods , DNA Glycosylases/analysis , Uracil-DNA Glycosidase/analysis , A549 Cells , DNA/genetics , DNA/metabolism , DNA Repair , Deoxyribonuclease IV (Phage T4-Induced)/chemistry , Fluorescent Dyes/chemistry , Guanosine/analogs & derivatives , Guanosine/metabolism , Humans , Kinetics , Limit of Detection , Magnetic Phenomena , Nucleic Acid Hybridization
8.
Anal Chem ; 89(14): 7684-7692, 2017 07 18.
Article in English | MEDLINE | ID: mdl-28621520

ABSTRACT

DNA glycosylases are responsible for recognition and excision of the damaged bases in the base excision repair pathway, and all mammals express multiple DNA glycosylases to maintain genome stability. However, simultaneous detection of multiple DNA glycosylase still remains a great challenge. Here, we develop a rapid and sensitive fluorescent method for simultaneous detection of human 8-oxoG DNA glycosylase 1 (hOGG1) and uracil DNA glycolase (UDG) using exonuclease-assisted recycling signal amplification in combination with fluorescent bases 2-aminopurine (2-AP) and pyrrolo-dC (P-dC) as the fluorophores. We design a bifunctional DNA probe modified with one 8-oxoG and five uracil bases, which can hybridize with the trigger probes to form a sandwiched DNA substrate for hOGG1 and UDG. In addition, we design 2-AP and P-dC signal probes as the hairpin structures with 2-AP and P-dC in the stems. The presence of hOGG1 and UDG may initiate the signal amplification process by the recycling lambda exonuclease digestion and generates distinct fluorescence signals, with 2-AP indicating the presence of hOGG1 and P-dC indicating the presence of UDG. This method can simultaneously detect multiple DNA glycosylases with the detection limits of 0.0035 U/mL for hOGG1 and 0.0025 U/mL for UDG, and it can even measure DNA glycosylases at the single-cell level. Moreover, this method can be applied for the measurement of enzyme kinetic parameters and the screening of DNA glycosylase inhibitors, holding great potential for further applications in biomedical research and clinical diagnosis.


Subject(s)
Biosensing Techniques , DNA Glycosylases/analysis , Fluorescence , Nucleotides/metabolism , DNA Glycosylases/antagonists & inhibitors , DNA Glycosylases/metabolism , Enzyme Inhibitors/pharmacology , Fluorescent Dyes/chemistry , Fluorescent Dyes/metabolism , Fluorouracil/pharmacology , HeLa Cells , Humans , Nucleotides/chemistry , Spectrometry, Fluorescence , Tumor Cells, Cultured
9.
Mol Carcinog ; 56(2): 781-788, 2017 02.
Article in English | MEDLINE | ID: mdl-27253753

ABSTRACT

8-Hydroxyguanine (8OHG), a major oxidative DNA lesion, is known to accumulate in prostate cancer; however, the status of one of its repair enzymes, MUTYH, in prostate cancer remains to be elucidated. In this study, we showed that the expression levels of MUTYH mRNA and protein were significantly lower in prostate cancer than in non-cancerous prostatic tissue by examining two independent, publicly available databases and by performing an immunohistochemical analysis of prostate cancer specimens obtained at our hospital, respectively. About two-thirds of the prostate cancers exhibited a reduced MUTYH expression. When the effect of reduced MUTYH expression in prostate adenocarcinoma on the somatic mutation load was examined using data from the Cancer Genome Atlas (TCGA) database, the numbers of total somatic mutations and somatic G:C to T:A mutations were significantly higher in the reduced MUTYH expression group than in the other group (P < 0.0001 and P = 0.0013, respectively). To determine the reason why reduced MUTYH expression leads to somatic mutation loads in prostate adenocarcinoma, we compared the DNA repair capacities between PC-3 prostatic cell line derived clones with different MUTYH expression levels. Both the capacities to cleave DNA containing adenine:8OHG mispairs and to suppress mutations caused by 8OHG were significantly lower in prostatic cell lines with lower MUTYH expression than in prostatic cell lines with higher MUTYH expression. These results suggested that reduced MUTYH expression is associated with somatic mutation loads via a reduction in DNA repair capacity in prostate adenocarcinoma. © 2016 Wiley Periodicals, Inc.


Subject(s)
Adenocarcinoma/genetics , DNA Glycosylases/genetics , DNA Repair , Down-Regulation , Mutation , Prostate/pathology , Prostatic Neoplasms/genetics , Adenocarcinoma/pathology , Cell Line, Tumor , DNA Glycosylases/analysis , Gene Expression Regulation, Neoplastic , Humans , Male , Prostate/metabolism , Prostatic Neoplasms/pathology , RNA, Messenger/genetics
10.
Anal Chem ; 88(15): 7523-9, 2016 08 02.
Article in English | MEDLINE | ID: mdl-27401302

ABSTRACT

DNA glycosylase is an initiating enzyme of cellular base excision repair pathway which is responsible for the repair of various DNA lesions and the maintenance of genomic stability, and the dysregulation of DNA glycosylase activity is associated with a variety of human pathology. Accurate detection of DNA glycosylase activity is critical to both clinical diagnosis and therapeutics, but conventional methods for the DNA glycosylase assay are usually time-consuming with poor sensitivity. Here, we demonstrate the base-excision-repair-induced construction of a single quantum dot (QD)-based sensor for highly sensitive measurement of DNA glycosylase activity. We use human 8-oxoguanine-DNA glycosylase 1 (hOGG1), which is responsible for specifically repairing the damaged 8-hydroxyguanine (8-oxoG, one of the most abundant and widely studied DNA damage products), as a model DNA glycosylase. In the presence of biotin-labeled DNA substrate, the hOGG1 may catalyze the removal of 8-oxo G from 8-oxoG·C base pairs to generate an apurinic/apyrimidinic (AP) site. With the assistance of apurinic/apyrimidinic endonuclease (APE1), the cleavage of the AP site results in the generation of a single-nucleotide gap. Subsequently, DNA polymerase ß incorporates a Cy5-labeled dGTP into the DNA substrate to fill the gap. With the addition of streptavidin-coated QDs, a QD-DNA-Cy5 nanostructure is formed via specific biotin-streptavidin binding, inducing the occurrence of fluorescence resonance energy transfer (FRET) from the QD to Cy5. The resulting Cy5 signal can be simply monitored by total internal reflection fluorescence (TIRF) imaging. The proposed method enables highly sensitive measurement of hOGG1 activity with a detection limit of 1.8 × 10(-6) U/µL. Moreover, it can be used to measure the enzyme kinetic parameters and detect the hOGG1 activity in crude cell extracts, offering a powerful tool for biomedical research and clinical diagnosis.


Subject(s)
DNA Glycosylases/analysis , Enzyme Assays/methods , Quantum Dots/chemistry , A549 Cells , Carbocyanines/chemistry , DNA/metabolism , DNA Glycosylases/metabolism , DNA Polymerase beta/metabolism , DNA Repair , DNA-(Apurinic or Apyrimidinic Site) Lyase/metabolism , Fluorescence Resonance Energy Transfer/methods , Fluorescent Dyes/chemistry , Humans , Limit of Detection
11.
Hum Pathol ; 52: 145-52, 2016 06.
Article in English | MEDLINE | ID: mdl-26980051

ABSTRACT

The effects of oxidative stress in adenocarcinomas of gastric cardia (AGCs) have not been fully elucidated. With a strict definition of AGC, we examined the immunohistochemical expressions of inducible nitric oxide synthase; 8-hydroxy-deoxyguanosine; and the base excision repair enzymes such as MUTYH, MTH1, and OGG1, and TP53 mutational status. Sixty-three cases of AGC were characterized by younger patient age (P = .0227) and more frequent venous invasion (P = .0106) compared with the adenocarcinomas of pylorus (APs). 8-hydroxy-deoxyguanosine was accumulated (P = .0011), whereas MUTYH (P = .0325) and OGG1 (P = .0007) were decreased, in the AGCs compared with the adjacent mucosa, but these differences were not detected in the APs. Among the AGCs, lower expressions of MUTYH (P = .0013) and MTH1 (P = .0059) were each significantly associated with diffuse-type histology. A lower expression of OGG1 was correlated with higher T-stage (P = .0011), lymphatic invasion (P = .004), and lymph node metastasis (P = .0094). In addition, the presence of TP53 mutation was associated with diffuse-type histology (P = .0153) and a lower level of MUTYH (P = .0221). The AGCs also showed a relatively high rate of a transversion-type mutation of TP53 (50%), whereas all TP53 mutations in the APs were transition type. Age 62years or older (P = .0073), diffuse-type histology (P = .0020), and TP53 mutation (P = .0066) were each associated with worse survival in the AGC patients. Our results indicate that oxidative stress accumulation and a downregulation of base excision repair enzymes may play an important role in the pathogenesis of AGC, in particular diffuse-type AGCs. Diffuse-type AGC might involve molecular pathways different from those of other subsets of gastric cancer.


Subject(s)
Adenocarcinoma/enzymology , Adenocarcinoma/genetics , Biomarkers, Tumor , Cardia/enzymology , DNA Glycosylases/analysis , DNA Repair Enzymes/analysis , Mutation , Phosphoric Monoester Hydrolases/analysis , Stomach Neoplasms/enzymology , Stomach Neoplasms/genetics , Tumor Suppressor Protein p53/genetics , 8-Hydroxy-2'-Deoxyguanosine , Adenocarcinoma/mortality , Adenocarcinoma/secondary , Adult , Aged , Aged, 80 and over , Biomarkers, Tumor/analysis , Biomarkers, Tumor/genetics , Cardia/pathology , DNA Mutational Analysis , DNA Repair , Deoxyguanosine/analogs & derivatives , Deoxyguanosine/analysis , Disease-Free Survival , Down-Regulation , Female , Genetic Predisposition to Disease , Humans , Immunohistochemistry , Kaplan-Meier Estimate , Lymphatic Metastasis , Male , Middle Aged , Neoplasm Staging , Nitric Oxide Synthase Type II/analysis , Oxidative Stress , Phenotype , Retrospective Studies , Stomach Neoplasms/mortality , Stomach Neoplasms/pathology
12.
Biosens Bioelectron ; 79: 679-84, 2016 May 15.
Article in English | MEDLINE | ID: mdl-26765532

ABSTRACT

Human 8-oxoguanine DNA glycosylase (hOGG1) plays a crucial role in maintaining the genomic integrity of living organisms for its capability of repairing DNA oxidative damage. The expression level of hOGG1 is closely associated with many diseases including various kinds of cancers. In this study, a novel "light-up" sensor based on target-induced formation of 5' phosphorylated probe and autocatalytic DNAzyme-generated rolling circle amplification has been developed for highly sensitive human 8-oxoguanine DNA glycosylase (hOGG1) activity assay. The approach reaches detection limit as low as 0.001U/mL for hOGG1 via scarcely increased background signal and dual signal amplification strategy. To the best of our knowledge, it is one of the most sensitive methods for the detection of base excision repair enzyme. Moreover, the approach shows excellent specificity over other nonspecific enzymes would interfere with the assay and holds great promise for application in real sample analysis. Hence, the proposed method provides a highly sensitive, selective, and desirable hOGG1 sensing platform.


Subject(s)
DNA Glycosylases/analysis , Biosensing Techniques/methods , DNA Glycosylases/metabolism , DNA, Catalytic/metabolism , Enzyme Assays/methods , Fluorometry/methods , HeLa Cells , Humans , Limit of Detection
14.
Anal Chim Acta ; 887: 216-223, 2015 Aug 05.
Article in English | MEDLINE | ID: mdl-26320805

ABSTRACT

Herein, we introduced a tungsten disulfide (WS2) nanosheet and exonuclease III (Exo III) co-assisted signal amplification strategy for highly sensitive fluorescent polarization (FP) assay of DNA glycosylase activity. Two DNA glycosylases, uracil-DNA glycosylase (UDG) and human 8-oxoG DNA glycosylase 1 (hOGG1), were tested. A hairpin-structured probe (HP) which contained damaged bases in the stem was used as the substrate. The removal of damaged bases from substrate by DNA glycosylase would lower the melting temperature of HP. The HP was then opened and hybridized with a FAM dye-labeled single strand DNA (DP), generating a duplex with a recessed 3'-terminal of DP. This design facilitated the Exo III-assisted amplification by repeating the hybridization and digestion of DP, liberating numerous FAM fluorophores which could not be adsorbed on WS2 nanosheet. Thus, the final system exhibited a small FP signal. However, in the absence of DNA glycosylases, no hybridization between DP and HP was occurred, hampering the hydrolysis of DP by Exo III. The intact DP was then adsorbed on the surface of WS2 nanosheet that greatly amplified the mass of the labeled-FAM fluorophore, resulting in a large FP value. With the co-assisted amplification strategy, the sensitivity was substantially improved. In addition, this method was applied to detect UDG activity in cell extracts. The study of the inhibition of UDG was also performed. Furthermore, this method is simple in design, easy in implementation, and selective, which holds potential applications in the DNA glycosylase related mechanism research and molecular diagnostics.


Subject(s)
DNA Glycosylases/metabolism , Disulfides/chemistry , Escherichia coli/enzymology , Exodeoxyribonucleases/metabolism , Fluorescence Polarization/methods , Tungsten/chemistry , Uracil-DNA Glycosidase/metabolism , Biosensing Techniques/methods , DNA Glycosylases/analysis , Enzyme Assays/methods , Humans , Limit of Detection , Nanostructures/chemistry , Uracil-DNA Glycosidase/analysis
15.
Mol Cell Biol ; 35(9): 1648-58, 2015 May.
Article in English | MEDLINE | ID: mdl-25733688

ABSTRACT

XRCC1 is an essential protein required for the maintenance of genomic stability through its implication in DNA repair. The main function of XRCC1 is associated with its role in the single-strand break (SSB) and base excision repair (BER) pathways that share several enzymatic steps. We show here that the polymorphic XRCC1 variant R194W presents a defect in its interaction with the DNA glycosylase OGG1 after oxidative stress. While proficient for single-strand break repair (SSBR), this variant does not colocalize with OGG1, reflecting a defect in its involvement in BER. Consistent with a role of XRCC1 in the coordination of the BER pathway, induction of oxidative base damage in XRCC1-deficient cells complemented with the R194W variant results in increased genetic instability as revealed by the accumulation of micronuclei. These data identify a specific molecular role for the XRCC1-OGG1 interaction in BER and provide a model for the effects of the R194W variant identified in molecular cancer epidemiology studies.


Subject(s)
DNA Glycosylases/metabolism , DNA Repair , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Oxidative Stress , Polymorphism, Single Nucleotide , Animals , CHO Cells , Cell Line , Cricetulus , DNA Glycosylases/analysis , DNA-Binding Proteins/analysis , Gene Deletion , Humans , Protein Interaction Maps , X-ray Repair Cross Complementing Protein 1
16.
BMC Mol Biol ; 15: 17, 2014 Aug 15.
Article in English | MEDLINE | ID: mdl-25127721

ABSTRACT

BACKGROUND: Human MutY glycosylase homolog (hMYH), a component of the base excision repair pathway, is responsible for the generation of apurinic/apyrimidinic sites. Rad9-Rad1-Hus1 (9-1-1) is a heterotrimeric protein complex that plays a role in cell cycle checkpoint control and DNA repair. In humans, hMYH and 9-1-1 interact through Hus1 and to a lesser degree with Rad1 in the presence of DNA damage. In Saccharomyces pombe, each component of the 9-1-1 complex interacts directly with SpMYH. The glycosylase activity of hMYH is stimulated by Hus1 and the 9-1-1 complex and enhanced by DNA damage treatment. Cells respond to different stress conditions in different manners. Therefore, we investigated whether Rad9 interacted with hMYH under different stresses. Here, we identified and visualized the interaction between hRad9 and hMYH and investigated the functional consequences of this interaction. RESULTS: Co-IP and BiFC indicates that hMYH interacts with hRad9. As shown by GST-pull down assay, this interaction is direct. Furthermore, BiFC with deletion mutants of hMYH showed that hRad9 interacts with N-terminal region of hMYH. The interaction was enhanced by hydroxyurea (HU) treatment. mRNA and protein levels of hMYH and hRad9 were increased following HU treatment. A marked increase in p-Chk1 (S345) and p-Cdk2 (T14, Y15) was observed. But this phosphorylation decreased in siMYH- or siRad9-transfected cells, and more pronounced decrease observed in co-transfected cells. CONCLUSIONS: Our data reveal that hRad9 interacts directly with N-terminal region of hMYH. This interaction is enhanced by HU treatment. Knockdown of one or both protein result in decreasing Chk1 and Cdk2 phosphorylation. Since both protein functions in the early detection of DNA damage, we suggest that this interaction occurs early in DNA damage pathway.


Subject(s)
Cell Cycle Proteins/metabolism , DNA Glycosylases/metabolism , Protein Interaction Maps , Cell Cycle Checkpoints , Cell Cycle Proteins/analysis , DNA Damage , DNA Glycosylases/analysis , Fluorescence Resonance Energy Transfer/methods , HEK293 Cells , Humans , Hydroxyurea/metabolism , Protein Interaction Domains and Motifs , Protein Interaction Mapping/methods
17.
Tumour Biol ; 35(6): 5971-83, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24622884

ABSTRACT

Defects in the DNA damage repair pathway contribute to cancer. The major pathway for oxidative DNA damage repair is base excision repair (BER). Although BER pathway genes (OGG1, APEX1 and XRCC1) have been investigated in a number of cancers, our knowledge on the prognostic significance of these genes and their role in head and neck squamous cell carcinoma is limited. Protein levels of OGG1, APEX1 and XRCC1 and a proliferation marker, Ki-67, were examined by immunohistochemical analysis, in a cohort of 50 HNSCC patients. Significant downregulation of OGG1 (p<0.04) and XRCC1 (p<0.05) was observed in poorly differentiated HNSCC compared to mod-well-differentiated cases. Significant upregulation of APEX1 (p<0.05) and Ki-67 (p<0.05) was observed in poorly differentiated HNSCC compared to mod-well-differentiated cases. Significant correlation was observed between XRCC1 and OGG1 (r=0.33, p<0.02). Inverse correlations were observed between OGG1 and Ki-67 (r=-0.377, p<0.005), between APEX1 and XRCC1 (r=-0.435, p<0.002) and between OGG1 and APEX1 (r=-0.34, p<0.02) in HNSCC. To confirm our observations, we examined BER pathway genes and a proliferation marker, Ki-67, expression at the mRNA level on 50 head and neck squamous cell carcinoma (HNSCC) and 50 normal control samples by quantitative real-time polymerase chain reaction. Significant downregulation was observed in case of OGG1 (p<0.04) and XRCC1 (p<0.02), while significant upregulation was observed in case of APEX1 (p<0.01) and Ki-67 (p<0.03) in HNSCC tissue samples compared to controls. Our data suggested that deregulation of base excision repair pathway genes, such as OGG1, APEX1 and XRCC1, combined with overexpression of Ki-67, a marker for excessive proliferation, may contribute to progression of HNSCC in Pakistani population.


Subject(s)
Carcinoma, Squamous Cell/genetics , DNA Repair/genetics , Head and Neck Neoplasms/genetics , Adult , Aged , Aged, 80 and over , Carcinoma, Squamous Cell/pathology , Cell Proliferation , DNA Glycosylases/analysis , DNA Glycosylases/genetics , DNA-(Apurinic or Apyrimidinic Site) Lyase/analysis , DNA-(Apurinic or Apyrimidinic Site) Lyase/genetics , DNA-Binding Proteins/analysis , DNA-Binding Proteins/genetics , Female , Head and Neck Neoplasms/pathology , Humans , Immunohistochemistry , Ki-67 Antigen/analysis , Ki-67 Antigen/genetics , Male , Middle Aged , RNA, Messenger/analysis , Squamous Cell Carcinoma of Head and Neck , X-ray Repair Cross Complementing Protein 1
18.
Dis Esophagus ; 27(3): 285-93, 2014 Apr.
Article in English | MEDLINE | ID: mdl-23902537

ABSTRACT

Both internal and external oxidative stresses act on DNA and can induce carcinogenesis. 8-hydroxydeoxyguanosine (8-OHdG) is an indicator of oxidative stress and it leads to transversion mutations and carcinogenesis. 8-OHdG is excision-repaired by 8-OHdG DNA glycosylase (OGG1). The purpose of this study is to clarify the effect of oxidative DNA damage and repair enzymes on esophageal carcinogenesis. The levels of 8-OHdG and OGG1 were immunohistochemically evaluated in resected specimens, including squamous cell carcinoma (SCC) in 97 patients with esophageal cancer. Higher levels of 8-OHdG in normal esophageal epithelium were associated with a higher smoking index (P = 0.0464). The 8-OHdG level was higher in cancerous areas than in normal epithelia (P = 0.0061), whereas OGG1 expression was weaker in cancerous areas than in normal epithelia (P < 0.0001). An increase of OGG1 expression in normal epithelium was observed as 8-OHdG levels increased (P = 0.0011). However, this correlation was not observed in cancerous areas. High OGG1 expression in the cytoplasm was related to deeper tumors (P = 0.0023), node metastasis (P = 0.0065) and stage (P = 0.0019). Oxidative DNA damage, which is attributable to smoking as well as disturbances in DNA repair systems, appears to be closely related to esophageal carcinogenesis and its progression.


Subject(s)
Carcinoma, Squamous Cell/chemistry , Carcinoma, Squamous Cell/enzymology , Carcinoma, Squamous Cell/pathology , DNA Damage , DNA Glycosylases/analysis , Deoxyguanosine/analogs & derivatives , Esophageal Neoplasms/enzymology , Esophageal Neoplasms/pathology , 8-Hydroxy-2'-Deoxyguanosine , Adult , Aged , Carcinoma, Squamous Cell/genetics , DNA Repair Enzymes/analysis , Deoxyguanosine/analysis , Epithelium/enzymology , Esophageal Neoplasms/genetics , Esophagus/enzymology , Female , Humans , Lymphatic Metastasis , Male , Middle Aged , Neoplasm Staging , Oxidative Stress , Smoking
19.
Reprod Sci ; 20(6): 688-98, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23287096

ABSTRACT

BACKGROUND: There is increasing evidence that oxidative stress is one of the key factors for progression of endometriosis. In this prospective controlled trial, we measured 6 different biomarkers of oxidative stress targeting protein, lipid, and DNA to quantify the severity and progression of endometriosis and establish a diagnostic marker for the disease. METHODS: A total of 62 consecutive patients were identified and enrolled in this study. After exclusion criteria, 44 patients were allocated to 3 groups: stage I/II (n = 14), stage III/IV (n = 16), and a control group (n = 14). The levels of 8-hydroxy-2-deoxyguanosine (8-OHdG), 8-oxoguanine DNA glycosylase (OGG1), protein carbonyl (PC), lipid peroxidation (LPO), reactive oxygen species (ROS), and total antioxidant capacity (TAC) were accessed in peritoneal fluid and tissue. RESULTS: Significantly higher levels of 8-OHdG and PC were seen in patients with endometriosis, in addition OGG1 expression was found to be significantly lower in patients with endometriosis (P < .001, P = .001, P = .033, respectively); ROS, TAC, and LPO were similar in stages I/II, stages III/IV, and control group. A predictive model was built using multivariable analyses and receiver-operating characteristics curves. The ability to predict and distinguish between patients without endometriosis, stage I/II endometriosis, and stage III/IV was very high. This model was highly discriminatory and had a concordance index of 0.87. CONCLUSION: In this cohort, higher DNA damage and lower DNA repair activity was related to endometriosis progression. Our results indicate that oxidative stress as a biomarker of cell injury can be used as a reliable quantitative test of endometriosis severity.


Subject(s)
Endometriosis/metabolism , Oxidative Stress , 8-Hydroxy-2'-Deoxyguanosine , Adult , Ascitic Fluid/chemistry , Biomarkers/analysis , Biopsy , Case-Control Studies , DNA Damage , DNA Glycosylases/analysis , DNA Repair , Deoxyguanosine/analogs & derivatives , Deoxyguanosine/analysis , Disease Progression , Endometriosis/genetics , Endometriosis/pathology , Female , Humans , Immunohistochemistry , Lipid Peroxidation , Logistic Models , Middle Aged , Multivariate Analysis , Odds Ratio , Predictive Value of Tests , Protein Carbonylation , ROC Curve , Reactive Oxygen Species/analysis , Reproducibility of Results , Severity of Illness Index
20.
Dis Esophagus ; 26(6): 644-50, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23137018

ABSTRACT

EAC in its early stages, when it can potentially be cured, is rarely symptomatic and is associated with high mortality rates because in part of late-stage diagnosis. Given that DNA repair is an important contributory factor of early-stage malignancy, our study focused on the expression of the base excision repair enzyme N-methylpurine DNA glycosylase (MPG) in EAC disease onset. MPG messenger RNA (mRNA) expression levels were determined using quantitative reverse transcriptase polymerase chain reaction from a maximum of 72 patient samples. Immunohistochemistry was further utilized for the detection of MPG protein, and semiquantitative analysis performed using an H-score approach was carried out on a total of 130 archival tissue samples of different esophageal pathologies. Nuclear localized MPG protein was detected in all nonmalignant tissues derived from the enterohepatic system, with H-score values of 3.9-5.5 ± 0.4-1.0. In cancerous tissues derived from the enterohepatic system, a 9.5-fold increase in the level of MPG mRNA expression was specifically observed in the malignant regions located within the esophagus region. Further analysis revealed a 9- and 14-fold increase in MPG mRNA expression in EAC tumor, node, metastasis stages II and III, respectively, suggesting MPG expression to correlate with EAC disease progression. Immunohistochemistry analysis further showed a sevenfold significant increase in MPG protein expression in EAC tissues. Intriguingly, there was a fivefold significant decrease in nuclear localized MPG protein expression in tissues derived from Barrett's esophagus and low-grade dysplasia. Such findings highlight a complex regulatory pattern governing DNA glycosylase base excision repair initiation, as normal tissue undergoes Barrett's metaplasia and later dedifferentiates to EAC. Indeed, disease-stage-specific alterations in the expression of MPG may highlight a potential role for MPG in determining EAC onset and thus potentially be of clinical relevance for early disease detection and increased patient survival.


Subject(s)
Adenocarcinoma/diagnosis , Biomarkers, Tumor/analysis , DNA Glycosylases/analysis , DNA Repair , Esophageal Neoplasms/diagnosis , Adenocarcinoma/pathology , Adenocarcinoma/secondary , Barrett Esophagus/pathology , Case-Control Studies , Cell Nucleus/ultrastructure , Cell Transformation, Neoplastic/pathology , DNA Glycosylases/genetics , Disease Progression , Early Detection of Cancer , Esophageal Neoplasms/pathology , Humans , Intestinal Mucosa/cytology , Kidney Tubules/cytology , Lymph Nodes/pathology , Mesangial Cells/ultrastructure , Metaplasia , Neoplasm Staging , Parietal Cells, Gastric/ultrastructure , Pilot Projects , Precancerous Conditions/pathology , RNA, Messenger/analysis , Retrospective Studies
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