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1.
J Biomol Struct Dyn ; 42(4): 2162-2169, 2024.
Article in English | MEDLINE | ID: mdl-37286380

ABSTRACT

G-quadruplexes (G4s) are secondary four-stranded DNA helical structures made up of guanine-rich nucleic acids that can assemble in the promoter regions of multiple genes under the appropriate conditions. Stabilization of G4 structures by small molecules can regulate transcription in non-telomeric regions, including in proto-oncogenes and promoter regions, contributing to anti-proliferative and anti-tumor activities. Because G4s are detectable in cancer cells but not in normal cells, they make excellent drug discovery targets. Diminazene, DMZ (or berenil), has been shown to be an efficient G-quadruplex binder. Due to the stability of the folding topology, G-quadruplex structures are frequently found in the promotor regions of oncogenes and may play a regulatory role in gene activation. Using molecular docking and molecular dynamics simulations on several different binding poses, we have studied DMZ binding toward multiple G4 topologies of the c-MYC G-quadruplex. DMZ binds preferentially to G4s that have extended loops and flanking bases. This preference arises from its interactions with the loops and the flanking nucleotides, which were not found in the structure lacking extended regions. The binding to the G4s with no extended regions instead occurred mostly through end stacking. All binding sites for DMZ were confirmed by 100 ns molecular dynamics simulations and through binding enthalpies calculated using the MM-PBSA method. The primary driving forces were electrostatic, as the cationic DMZ interacts with the anionic phosphate backbone, and through van der Waals interactions, which primarily contributed in end stacking interactions.Communicated by Ramaswamy H. Sarma.


Subject(s)
Diminazene/analogs & derivatives , G-Quadruplexes , Diminazene/chemistry , Diminazene/metabolism , Molecular Docking Simulation , DNA/chemistry
2.
Molecules ; 25(12)2020 Jun 21.
Article in English | MEDLINE | ID: mdl-32575817

ABSTRACT

Novel transition metal complexes (Au, Pd, Pt) with berenil and 2-(1-methyl-5-nitroimidazol-2-yl)ethanol were obtained through two-step synthesis. The cytotoxicity assay against MCF-7 and MDA-MB-231 breast cancer cells revealed that novel platinum and palladium complexes cause a reduction on the viability of MCF-7 and MDA-MB-231 breast cancer cells to a greater extent than cisplatin. The complexes showed lower cytotoxicity on normal MCF-10A human breast epithelial cells than on tumor cells. Furthermore, we observed that these complexes selectively concentrate in tumor cell mitochondria due to the characteristic for these cells increased membrane potential that may explain their increased proapoptotic activity. The activity of the synthesized compounds against topoisomerase type IIα and their increased impact on DNA defragmentation also were documented. The novel complexes also induced autophagosome changes and inhibited tumor growth in xenograft models (established using breast cancer cells).


Subject(s)
Antineoplastic Agents/pharmacology , Autophagosomes/drug effects , Breast Neoplasms/drug therapy , Coordination Complexes/pharmacology , Diminazene/analogs & derivatives , Nitroimidazoles/chemistry , Organometallic Compounds/pharmacology , Animals , Apoptosis/drug effects , Apoptosis/genetics , Cell Line, Tumor , Cell Survival/drug effects , Cisplatin/pharmacology , Coordination Complexes/chemical synthesis , Coordination Complexes/chemistry , DNA/drug effects , DNA/metabolism , DNA Topoisomerases, Type II/metabolism , Diminazene/chemistry , Female , Gold/pharmacology , Humans , Membrane Potential, Mitochondrial/drug effects , Mitochondria/drug effects , Mitochondria/metabolism , Palladium/pharmacology , Platinum/pharmacology , Transition Elements/chemistry , Xenograft Model Antitumor Assays , Zebrafish
3.
J Chem Theory Comput ; 16(8): 5203-5211, 2020 Aug 11.
Article in English | MEDLINE | ID: mdl-32584570

ABSTRACT

The effects of biomolecular embedding on the photoinduced relaxation process of the DNA-minor-groove binder berenil, diminazene aceturate, are studied with quantum mechanics/molecular mechanics, QM/MM, calculations that employ the algebraic diagrammatic construction through second-order, ADC(2), for the quantum mechanical part and an atomistic polarizable embedding for the classical part. The lowest singlet excitation to the S1 state is a bright transition with a ππ* character and a perichromatic red shift, due to the interactions with the solvent and DNA. The excited-state relaxation pathway is a two-step mechanism, an N═N azo-bond stretch followed by a volume-conserving bicycle-pedal twist. The DNA confinement and the coupling to solvent molecules via hydrogen bonds lead, for the excited-state relaxation process, only to small deviations from the ideal bicycle-pedal relaxation. Because of its volume-conserving character, the S1 excited-state relaxation proceeds almost unhindered, even in a fully rigid minor-groove confinement. With a fully frozen DNA minor groove and solvent, the energy gap for deexcitation from S1 to the ground state increased to 2.0 eV compared to 0.16 eV in aqueous solution. When the relaxation of the first solvation shell is included, the relaxation process on the S1 potential energy surface proceeds to a region on the potential energy surface, where only a small gap to the ground-state potential energy surface remains, 0.43 eV. These results show that the solvent relaxation has a significant effect in controlling the energy gap between the ground and S1 electronically excited states, which explains the experimental observations of the fluorescence characteristics of berenil in DNA confinement.


Subject(s)
DNA/chemistry , Diminazene/analogs & derivatives , Molecular Dynamics Simulation , Diminazene/chemistry , Photochemical Processes , Quantum Theory
4.
Carbohydr Res ; 482: 107742, 2019 Aug 01.
Article in English | MEDLINE | ID: mdl-31310940

ABSTRACT

Glycosaminoglycans (GAGs) is a particular class of linear anionic periodic polysaccharides, which play a key role in many cell signaling processes in the extracellular matrix by direct interactions with multiple proteins targets. Because of their periodic nature resulting in experimental challenges to study these molecules, computational approaches recently proved to be successful in complementing the experiments aimed to understand GAG interactions. However, the aspect of GAG binding of small, pharmacologically active molecules is still essentially understudied despite its significance. In this work, we apply computational approaches to rigorously characterize the interactions between GAGs and two trypanosoma active DNA targeting agents, berenil and pentamidine, which mainly differ in the structure of their intramolecular linkers connecting two benzamidine moieties. We thoroughly analyze their binding to heparin and chondroitin 6-sulfate in terms of dynamics, energetics and properties of π-stacked oligomeric structures of the drug molecules formed upon GAG association. Our work contributes to the general understanding of biologically relevant interactions between GAGs and small molecules which has potential impact in drug pharmacology and related therapeutic modalities.


Subject(s)
Antiprotozoal Agents/metabolism , Chondroitin Sulfates/metabolism , Computer Simulation , Diminazene/analogs & derivatives , Heparin/metabolism , Pentamidine/metabolism , Diminazene/chemistry , Diminazene/metabolism , Hydrogen Bonding , Molecular Conformation , Molecular Dynamics Simulation , Pentamidine/chemistry , Quantum Theory , Thermodynamics
5.
Biosensors (Basel) ; 9(2)2019 Apr 12.
Article in English | MEDLINE | ID: mdl-31013753

ABSTRACT

Development of technologies for rapid screening of DNA secondary structure thermal stability and the effects on stability for binding of small molecule drugs is important to the drug discovery process. In this report, we describe the capabilities of an electrochemical, microdevice-based approach for determining the melting temperatures (Tm) of electrode-bound duplex DNA structures. We also highlight new features of the technology that are compatible with array development and adaptation for high-throughput screening. As a foundational study to exhibit device performance and capabilities, melting-curve analyses were performed on 12-mer DNA duplexes in the presence/absence of two binding ligands: diminazene aceturate (DMZ) and proflavine. By measuring electrochemical current as a function of temperature, our measurement platform has the ability to determine the effect of binding ligands on Tm values with high signal-to-noise ratios and good reproducibility. We also demonstrate that heating our three-electrode cell with either an embedded microheater or a thermoelectric module produces similar results. The ΔTm values we report show the stabilizing ability of DMZ and proflavine when bound to duplex DNA structures. These initial proof-of-concept studies highlight the operating characteristics of the microdevice platform and the potential for future application toward other immobilized samples.


Subject(s)
Biosensing Techniques/methods , DNA/chemistry , Electrochemical Techniques/methods , Diminazene/analogs & derivatives , Diminazene/chemistry , Ligands , Proflavine/chemistry , Transition Temperature
6.
Br J Pharmacol ; 175(12): 2204-2218, 2018 06.
Article in English | MEDLINE | ID: mdl-29134638

ABSTRACT

BACKGROUND AND PURPOSE: Acid-sensing ion channels (ASICs) are primary acid sensors in mammals, with the ASIC1b and ASIC3 subtypes being involved in peripheral nociception. The antiprotozoal drug diminazene is a moderately potent ASIC inhibitor, but its analgesic activity has not been assessed. EXPERIMENTAL APPROACH: We determined the ASIC subtype selectivity of diminazene and the mechanism by which it inhibits ASICs using voltage-clamp electrophysiology of Xenopus oocytes expressing ASICs 1-3. Its peripheral analgesic activity was then assessed relative to APETx2, an ASIC3 inhibitor, and morphine, in a Freund's complete adjuvant (FCA)-induced rat model of inflammatory pain. KEY RESULTS: Diminazene inhibited homomeric rat ASICs with IC50 values of ~200-800 nM, via an open channel and subtype-dependent mechanism. In rats with FCA-induced inflammatory pain in one hindpaw, diminazene and APETx2 evoked more potent peripheral antihyperalgesia than morphine, but the effect was partial for APETx2. APETx2 potentiated rat ASIC1b at concentrations 30-fold to 100-fold higher than the concentration inhibiting ASIC3, which may have implications for its use in in vivo experiments. CONCLUSIONS AND IMPLICATIONS: Diminazene and APETx2 are moderately potent ASIC inhibitors, both inducing peripheral antihyperalgesia in a rat model of chronic inflammatory pain. APETx2 has a more complex ASIC pharmacology, which must be considered when it is used as a supposedly selective ASIC3 inhibitor in vivo. Our use of outbred rats revealed responders and non-responders when ASIC inhibition was used to alleviate inflammatory pain, which is aligned with the concept of number-needed-to-treat in human clinical studies. LINKED ARTICLES: This article is part of a themed section on Recent Advances in Targeting Ion Channels to Treat Chronic Pain. To view the other articles in this section visit http://onlinelibrary.wiley.com/doi/10.1111/bph.v175.12/issuetoc.


Subject(s)
Acid Sensing Ion Channels/metabolism , Chronic Pain/drug therapy , Cnidarian Venoms/metabolism , Diminazene/pharmacology , Hyperalgesia/drug therapy , Hypoglycemic Agents/pharmacology , Inflammation/drug therapy , Acid Sensing Ion Channel Blockers/chemistry , Acid Sensing Ion Channel Blockers/pharmacology , Animals , Chronic Pain/metabolism , Diminazene/chemistry , Disease Models, Animal , Hyperalgesia/metabolism , Hypoglycemic Agents/chemistry , Inflammation/metabolism , Male , Pain Measurement , Rats , Rats, Sprague-Dawley , Xenopus laevis
7.
Mol Med Rep ; 16(4): 4791-4796, 2017 Oct.
Article in English | MEDLINE | ID: mdl-28791381

ABSTRACT

The present study aimed to investigate whether diminazene attenuates myocardial infarction (MI) in rats. In addition, the present study investigated whether ACE2 signaling was involved in the effects of diminazene on protein function. A rat model of acute myocardial infarction (AMI) was established by occlusion of the left anterior descending coronary artery. The AMI model rats received intraperitoneal injections of diminazene (5 mg/kg/day) for 3 days. Treatment with diminazene significantly inhibited the expression of casein kinase and lactate dehydrogenase, and reduced infarct size in AMI rats. The findings indicated that diminazene significantly reduced the levels of inflammatory factors including tumor necrosis factor­α and interleukin­6, suppressed the protein expression of cytochrome c oxidase subunit 2 (COX­2) and inducible nitric oxide synthase (iNOS), and activated angiotensin­converting enzyme 2 (ACE2), angiotensin II receptor type 1 (AT1R) and MAS1 proto­oncogene, G protein­coupled receptor (MasR) protein expression in AMI model rats. In conclusion, the present study demonstrated that diminazene attenuated AMI in rats via suppression of inflammation, reduction of COX­2 and iNOS expression, and activation of the ACE2/AT1R/MasR signaling pathway.


Subject(s)
Cardiotonic Agents/pharmacology , Diminazene/pharmacology , Inflammation/metabolism , Myocardial Infarction/enzymology , Myocardial Infarction/pathology , Peptidyl-Dipeptidase A/metabolism , Angiotensin-Converting Enzyme 2 , Animals , Biomarkers , Cardiotonic Agents/chemistry , Creatine Kinase/metabolism , Diminazene/chemistry , Disease Models, Animal , Enzyme Activation/drug effects , Inflammation/enzymology , Inflammation Mediators/metabolism , Lactate Dehydrogenases/metabolism , Myocardial Infarction/drug therapy , Proto-Oncogene Mas , Rats
8.
PLoS One ; 12(5): e0176694, 2017.
Article in English | MEDLINE | ID: mdl-28463992

ABSTRACT

PRSS3/mesotrypsin is an atypical isoform of trypsin, the upregulation of which has been implicated in promoting tumor progression. To date there are no mesotrypsin-selective pharmacological inhibitors which could serve as tools for deciphering the pathological role of this enzyme, and could potentially form the basis for novel therapeutic strategies targeting mesotrypsin. A virtual screen of the Natural Product Database (NPD) and Food and Drug Administration (FDA) approved Drug Database was conducted by high-throughput molecular docking utilizing crystal structures of mesotrypsin. Twelve high-scoring compounds were selected for testing based on lowest free energy docking scores, interaction with key mesotrypsin active site residues, and commercial availability. Diminazene (CID22956468), along with two similar compounds presenting the bis-benzamidine substructure, was validated as a competitive inhibitor of mesotrypsin and other human trypsin isoforms. Diminazene is the most potent small molecule inhibitor of mesotrypsin reported to date with an inhibitory constant (Ki) of 3.6±0.3 µM. Diminazene was subsequently co-crystalized with mesotrypsin and the crystal structure was solved and refined to 1.25 Å resolution. This high resolution crystal structure can now offer a foundation for structure-guided efforts to develop novel and potentially more selective mesotrypsin inhibitors based on similar molecular substructures.


Subject(s)
Drug Discovery , Molecular Docking Simulation , Trypsin Inhibitors/pharmacology , Trypsin/metabolism , Amino Acid Sequence , Catalytic Domain , Databases, Pharmaceutical , Diminazene/chemistry , Diminazene/pharmacology , Dose-Response Relationship, Drug , Drug Discovery/methods , Escherichia coli , Humans , Hydrogen Bonding , Molecular Structure , Static Electricity , Trypsin/chemistry , Trypsin/genetics , Trypsin Inhibitors/chemistry , United States , United States Food and Drug Administration
9.
J Phys Chem Lett ; 8(9): 1986-1992, 2017 May 04.
Article in English | MEDLINE | ID: mdl-28426228

ABSTRACT

Many synthetic DNA minor groove binders exhibit a strong increase in fluorescence when bound to DNA. The pharmaceutical-relevant berenil (diminazene aceturate) is an exception with an extremely low fluorescence quantum yield (on the order of 10-4). We investigate the ultrafast excited-state dynamics of this triazene by femtosecond time-resolved fluorescence experiments in water, ethylene glycol, and buffer and bound to the enzyme ß-trypsin, the minor groove of AT-rich DNA, and G-quadruplex DNA. Ab initio calculations provide additional mechanistic insight. The complementing studies unveil that the excited-state motion initiated by ππ* excitation occurs in two phases: a subpicosecond phase associated with the lengthening of the central N═N double bond, followed by a bicycle-pedal-type motion of the triazene bridge, which is almost volume-conserving and can proceed efficiently within only a few picoseconds even under spatially confined conditions. Our results elucidate the excited-state relaxation mechanism of aromatic triazenes and explain the modest sensitivity of the fluorescence quantum yield of berenil even when it is bound to various biomolecules.


Subject(s)
DNA/chemistry , Diminazene/analogs & derivatives , Spectrometry, Fluorescence , Trypsin/metabolism , Binding Sites , Diminazene/chemistry , G-Quadruplexes , Molecular Structure , Triazenes
10.
Drug Des Devel Ther ; 10: 3363-3378, 2016.
Article in English | MEDLINE | ID: mdl-27789937

ABSTRACT

The aim of this study was to investigate the bacteriostatic and bactericidal effects of diminazene aceturate (DA) against five strains of pathogenic bacteria and two strains of nonpathogenic bacteria. The results showed that 5 µg/mL of DA suppressed the growth of pathogenic Escherichia coli by as much as 77% compared with the controls. Enterohemorrhagic E. coli EDL933 (an E. coli O157:H7 strain) was the most sensitive to DA with a minimum inhibitory concentration of 20 µg/mL. Additional investigations showed that DA induced the highest level of intracellular reactive oxygen species in EDL933. A positive correlation between the reactive oxygen species levels and DA concentration was demonstrated. DA (5 µg/mL) was also a potent uncoupler, inducing a stationary phase collapse (70%-75%) in both strains of E. coli O157:H7. Further investigation showed that the collapse was due to the NaCl:DA ratio in the broth and was potassium ion dependent. A protease screening assay was conducted to elucidate the underlying mechanism. It was found that at neutral pH, the hydrolysis of H-Asp-pNA increased by a factor of 2-3 in the presence of DA, implying that DA causes dysregulation of the proton motive force and a decrease in cellular pH. Finally, a commercial verotoxin test showed that DA did not significantly increase toxin production in EDL933 and was a suitable antibacterial agent for Shiga-toxin-producing E. coli.


Subject(s)
Anti-Bacterial Agents/pharmacology , Diminazene/analogs & derivatives , Escherichia coli O157/drug effects , Peptide Hydrolases/chemistry , Shiga Toxin/antagonists & inhibitors , Shiga Toxins/adverse effects , Anti-Bacterial Agents/chemistry , Diminazene/chemistry , Diminazene/pharmacology , Escherichia coli O157/chemistry , High-Throughput Screening Assays , Shiga Toxins/chemistry
11.
Eur J Med Chem ; 118: 266-75, 2016 Aug 08.
Article in English | MEDLINE | ID: mdl-27132164

ABSTRACT

G-quadruplex ligands have been touted as potential anticancer agents, however, none of the reported G-quadruplex-interactive small molecules have gone past phase II clinical trials. Recently it was revealed that diminazene (berenil, DMZ) actually binds to G-quadruplexes 1000 times better than DNA duplexes, with dissociation constants approaching 1 nM. DMZ however does not have strong anticancer activities. In this paper, using a panel of biophysical tools, including NMR, FRET melting assay and FRET competition assay, we discovered that monoamidine analogues of DMZ bearing alkyne substitutes selectively bind to G-quadruplexes. The lead DMZ analogues were shown to be able to target c-MYC G-quadruplex both in vitro and in vivo. Alkyne DMZ analogues display respectable anticancer activities (single digit micromolar GI50) against ovarian (OVCAR-3), prostate (PC-3) and triple negative breast (MDA-MB-231) cancer cell lines and represent interesting new leads to develop anticancer agents.


Subject(s)
Alkynes/chemistry , Antineoplastic Agents/metabolism , Antineoplastic Agents/pharmacology , Diminazene/metabolism , Diminazene/pharmacology , G-Quadruplexes , Antineoplastic Agents/chemistry , Base Sequence , Cell Line, Tumor , Cell Survival/drug effects , Diminazene/chemistry , Humans , Proto-Oncogene Proteins c-myc/genetics , Proto-Oncogene Proteins c-myc/metabolism , Telomerase/antagonists & inhibitors
12.
Prev Vet Med ; 126: 151-8, 2016 Apr 01.
Article in English | MEDLINE | ID: mdl-26907208

ABSTRACT

Trypanocidal drugs remain the most accessible and thus commonly used means of controlling tsetse transmitted animal African trypanosomosis. In Togo, trypanocides are sold on official as well as unofficial markets, but the quality of these trypanocides is undocumented so a drug quality assessment study was conducted from May 2013 to June 2014. Trypanocides supplied by European, Indian and Chinese pharmaceutical companies and sold on official and unofficial markets in Togo were purchased. In total fifty-two trypanocides were obtained, 24 of these samples from official markets and 28 from unofficial markets made up of a total of 36 diminazene diaceturate and 16 isometamidium chloride hydrochloride samples. The samples were analysed in the reference laboratory of the OIE (World Organisation for Animal Health), Laboratory for the Control of Veterinary Medicines (LACOMEV) in Dakar which uses galenic testing and high performance liquid chromatography (HPLC) testing as standard reference analysis methods. The results revealed a high proportion of trypanocides of sub-standard quality on the Togolese market: 40% were non-compliant to these quality reference standards. All of the HPLC non-compliant samples contained lower amounts of active ingredient compared to the concentration specified on the packaging. Non-compliance was higher in samples from the unofficial (53.57%) than from the official markets (25%; p=0.04).The main drug manufacturers, mostly of French origin in the study area, supply quality drugs through the official legal distribution circuit. Products of other origins mostly found on illegal markets present a significantly lower quality.


Subject(s)
Diminazene/analogs & derivatives , Phenanthridines/standards , Trypanocidal Agents/standards , Chromatography, High Pressure Liquid , Diminazene/chemistry , Diminazene/standards , Pharmacies/standards , Phenanthridines/chemistry , Quality Control , Togo
13.
Phys Chem Chem Phys ; 17(38): 24560-5, 2015 Oct 14.
Article in English | MEDLINE | ID: mdl-26344166

ABSTRACT

It is shown that the antiprotozoal drugs berenil and pentamidine, conventional minor groove binders of DNA, form non-covalent complexes with polyanionic glycosaminoglycans. Induced circular dichroism (CD) spectra as well as UV hypochromism confirmed drug binding to the asymmetric template of heparin and chondroitin 6-sulfate. The biphasic nature of the CD signals refers to intermolecular chiral exciton coupling between the dicationic guest molecules forming a right- or a left-handed helical array along the GAG chains. Quantitative evaluation of the spectroscopic data measured in pH 7.0 buffer solution (80 mM NaCl) indicated a higher (Ka ∼ 10(6) M(-1) for berenil) and a lower (Ka ∼ 10(5) M(-1) for pentamidine) affinity heparin binding of these agents, similar to that reported for DNA. Drug-chondroitin sulfate complexes (Ka ∼ 10(4)-10(5) M(-1)) could be detected only at low ionic strength. These results imply that besides nucleic acids, GAGs may be another pharmacological targets for diarylamidine drugs.


Subject(s)
Antiprotozoal Agents/chemistry , DNA/chemistry , Diminazene/analogs & derivatives , Glycosaminoglycans/chemistry , Pentamidine/chemistry , Antiprotozoal Agents/metabolism , Chondroitin Sulfates/chemistry , Chondroitin Sulfates/metabolism , Circular Dichroism , DNA/metabolism , Diminazene/chemistry , Diminazene/metabolism , Glycosaminoglycans/metabolism , Pentamidine/metabolism , Spectrophotometry, Ultraviolet
14.
Mol Biosyst ; 10(10): 2724-34, 2014 Oct.
Article in English | MEDLINE | ID: mdl-25096593

ABSTRACT

G-quadruplexes have shown great promise as chemotherapeutic targets, probably by inhibiting telomere elongation or downregulating oncogene expression. There have been many G-quadruplex ligands developed over the years but only a few have drug-like properties. Consequently only a few G-quadruplex ligands have entered clinical trials as cancer chemotherapeutic agents. The DNA minor groove ligand, berenil (diminazene aceturate or DMZ), is used to treat animal trypanosomiasis and hence its toxicological profile is already known, making it an ideal platform to engineer into new therapeutics. Herein, using a plethora of biophysical methods including UV, NMR, MS and ITC, we show that DMZ binds to several G-quadruplexes with a Kd of ∼1 nM. This is one of the strongest G-quadruplex binding affinities reported to date and is 10(3) tighter than the berenil affinity for an AT-rich duplex DNA. Structure-activity-relationship studies demonstrate that the two amidine groups on DMZ are important for binding to both G-quadruplex and duplex DNA. This work reveals that DMZ or berenil is not as selective for AT-rich duplexes as originally thought and that some of its biological effects could be manifested through G-quadruplex binding. The DMZ scaffold represents a good starting point to develop new G-quadruplex ligands for cancer cell targeting.


Subject(s)
Diminazene/analogs & derivatives , Diminazene/chemistry , G-Quadruplexes , Amidines , Circular Dichroism , DNA/chemistry , DNA/metabolism , Diminazene/metabolism , Ligands , Mass Spectrometry , Models, Molecular , Molecular Conformation , Nuclear Magnetic Resonance, Biomolecular , Nucleic Acid Conformation , Structure-Activity Relationship , Thermodynamics
15.
Anticancer Agents Med Chem ; 14(8): 1179-86, 2014.
Article in English | MEDLINE | ID: mdl-24954860

ABSTRACT

The metabolism of alkylating agents is accompanied by the generation of reactive oxygen species. The aim of this study was to treat estrogen receptor-positive and estrogen receptor-negative human breast cancer cells, MCF-7 and MDA-MB-231, respectively, with cisplatin and five different berenil-platinum (II) complexes, and then to investigate the oxidative modifications of DNA, lipid and protein, and to compare them with the profile of various pro- and antiapoptotic proteins. Changes in the levels of 8-hydroxy-2'-deoxyguanosine, 4-hydroxynonenal, carbonyl groups, dityrosine, active caspases 3, 8 and 9, as well as the expression of Bcl-2, Bax, cytochrome c, and p53 were subsequently examined. Activities of superoxide dismutase, catalase and glutathione, vitamin C levels were also investigated. Cellular reactions to cisplatin and the berenil-platinum (II) derivatives were more pronounced in MCF-7 cells as compared with the MDA-MB231 cells. Furthermore, the berenil-platinum (II) derivatives were found to be more effective than cisplatin. All of the complexes reduced the activity of superoxide dismutase and catalase, and also lowered the levels of non-enzymatic antioxidants. Increased level of lipid, protein as well as DNA damage markers was also observed after berenil-platinum (II) derivatives treatment. Similarly, the increase in the levels of the proapoptotic factors, were detected in MCF-7 and MDA-MB231 cells. Incubation of examined cells with the berenil-platinum (II) complexes also led to the increase in the levels of active caspases 3, 8 and 9. In conclusion, the results of the present study demonstrated that berenil-platinum (II) complexes more efficiently mediate cellular oxidative modifications and proapoptotic metabolism, particularly in MCF-7 cells, compared to cisplatin. Pt2(isopropylamine)4berenil2 and Pt2(piperidine)4(berenil)2 notably affected the cellular metabolism of estrogen-positive breast cancer cells. Thus, these complexes may be valuable for the design of additional anticancer drugs.


Subject(s)
Antineoplastic Agents/pharmacology , Apoptosis/drug effects , Breast Neoplasms/pathology , Diminazene/analogs & derivatives , Organoplatinum Compounds/pharmacology , Receptors, Estrogen/metabolism , Antineoplastic Agents/chemistry , Apoptosis Regulatory Proteins/metabolism , Breast Neoplasms/metabolism , Cell Line, Tumor , DNA Damage , Diminazene/chemistry , Diminazene/pharmacology , Female , Humans , Lipids/chemistry , Organoplatinum Compounds/chemistry , Oxidation-Reduction
16.
J Chromatogr A ; 1327: 1-13, 2014 Jan 31.
Article in English | MEDLINE | ID: mdl-24406142

ABSTRACT

The aromatic ring systems are among the most stable chemical structures known and in combination with many other chemical groups, they can originate an extraordinary variety of molecules, with interesting chemical and physical properties. Many aromatic molecules have been applied for the purification of various biomolecules, such as proteins, carbohydrates and nucleic acids. Combining aromatic chromatography with optimized production, extraction and clarification procedures, can offer a number of advantages for pharmaceutical plasmid DNA (pDNA) purification. This review focuses on pDNA chromatographic purification and analysis using aromatic ligands. The goal is to give an updated view of all existing aromatic ligands, their main characteristics, applicability and technical features of the chromatographic methods in which they have been applied. Also, a critical assessment of each method is performed as well as a comparison of the different procedures, their key features and limitations.


Subject(s)
DNA/isolation & purification , Amino Acids/chemistry , Benzene Derivatives/chemistry , Boronic Acids/chemistry , Chromatography/methods , Diminazene/analogs & derivatives , Diminazene/chemistry , Imidazoles/chemistry , Ligands , Phenanthridines/chemistry , Plasmids , Quinine/analogs & derivatives , Quinine/chemistry , Sulfhydryl Compounds/chemistry , Sulfides/chemistry
17.
Article in English | MEDLINE | ID: mdl-24291718

ABSTRACT

The present study, reports the utilization of berenil as ligand in a negative pseudo-affinity chromatographic step to purify the plasmid pVAX1-LacZ from Escherichia coli clarified lysates. The chromatographic support was prepared by coupling berenil to epoxy-activated Sepharose and was qualitatively and quantitatively characterized using scanning electron microscopy, Fourier transformed infrared spectroscopy and elemental analysis. The clarified lysate was loaded onto the berenil-Sepharose support with 0.55M of ammonium sulphate in the eluent, achieving the immediate elution of plasmid DNA. The impurities tightly bound to the support, were eluted after decreasing the salt concentration to 0M. The overall process enabled the recovery of 87% of loaded plasmid DNA with a HPLC purity of ≫99% and according to FDA specifications. This method represents an alternative approach to the previous utilization of the same chromatographic pseudo-affinity support in a positive mode. It uses lower amounts of salt and one-step chromatographic procedure, resulting in smaller operating time and costs and representing an alternate procedure for plasmid DNA purification.


Subject(s)
Chromatography, Affinity/methods , DNA, Circular/isolation & purification , Diminazene/analogs & derivatives , Plasmids/isolation & purification , Sepharose/chemistry , DNA, Circular/chemistry , Diminazene/chemistry , Particle Size , Plasmids/chemistry
18.
Drug Res (Stuttg) ; 63(6): 300-4, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23532624

ABSTRACT

Diminazene aceturate and Antipyrine combination therapy is widely used in veterinary medicine. A simple reverse HPLC method for the analysis of samples of a ready injectable formulation containing a mixture of active ingredients and inactive excipients has been developed. The HPLC analysis was carried out using a reversed phase (RP)-C18 (250 mm×4.0 mm, 5 µm) column. The isocratic mobile phase consisted of a mixture of acetonitrile, methanol, phosphate buffer and hexane sulfonate; the flow rate was 0.6 mL/min and ultraviolet detection was at 291 nm. This method was validated in accordance with FDA and ICH guidelines and showed good linearity, accuracy, precision, selectivity and the system suitability results were within the acceptance criteria. A stability-indicating study was also carried out and indicated that this method could be used for purity and degradation evaluation of these formulations.


Subject(s)
Anti-Inflammatory Agents, Non-Steroidal/analysis , Antipyrine/analysis , Chromatography, High Pressure Liquid/methods , Diminazene/analogs & derivatives , Trypanocidal Agents/analysis , Antipyrine/administration & dosage , Antipyrine/chemistry , Diminazene/administration & dosage , Diminazene/analysis , Diminazene/chemistry , Drug Stability , Injections , Limit of Detection , Solutions
19.
Article in English | MEDLINE | ID: mdl-22884887

ABSTRACT

In this study, berenil was tested as a ligand, specifically to purify plasmids of different sizes pVAX1-LacZ (6.05 Kbp) and pCAMBIA-1303 (12.361 Kbp) from clarified Escherichia coli alkaline lysates. For this purpose, chromatographic experiments were performed using Sepharose derivatized with berenil. The results showed that both pDNA molecules are completely purified using lower amounts of salt in the eluent than those previously reported for other pseudo-affinity and hydrophobic interaction chromatography based processes. Total retention of all lysate components was achieved with 1.3M ammonium sulphate in the eluent buffer and pDNA elution was obtained by decreasing the salt concentration to 0.55 M. All impurities were eluted after decreasing the concentration to 0M. The recovery yield for pCAMBIA-1303 (45%) was lower than that obtained for pVAX1-LacZ (85%), however the larger pDNA showed a higher purity level. Purification of pVAX1-LacZ was also performed using non-clarified E. coli process streams, replacing the clarification step with a second chromatographic run on the berenil-Sepharose. Using the same binding and elution conditions as before, a pure plasmid sample was obtained with a 33% yield and with all host impurity levels in accordance with the requirements established by the regulatory agencies. These results suggest that this chromatographic method is a promising alternative to purify pDNA for therapeutic use.


Subject(s)
Chromatography, Affinity/methods , DNA/isolation & purification , Diminazene/analogs & derivatives , Escherichia coli/chemistry , Escherichia coli/genetics , Plasmids/isolation & purification , Chromatography, High Pressure Liquid , DNA/chemistry , Diminazene/chemistry , Plasmids/chemistry , Plasmids/genetics , Real-Time Polymerase Chain Reaction , Sodium Chloride/chemistry
20.
J Biomol Screen ; 16(8): 878-85, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21859683

ABSTRACT

The authors describe a structure-based strategy to identify therapeutically beneficial off-target effects by screening a chemical library of Food and Drug Administration (FDA)-approved small-molecule drugs matching pharmacophores defined for specific target proteins. They applied this strategy to angiotensin-converting enzyme 2 (ACE2), an enzyme that generates vasodilatory peptides and promotes protection from hypertension-associated cardiovascular disease. The conformation-based structural selection method by molecular docking using DOCK allowed them to identify a series of FDA-approved drugs that enhance catalytic efficiency of ACE2 in vitro. These data demonstrate that libraries of approved drugs can be rapidly screened to identify potential side effects due to interactions with specific proteins other than the intended targets.


Subject(s)
Diminazene/pharmacology , Enzyme Activation/drug effects , High-Throughput Screening Assays , Hypertension/enzymology , Peptidyl-Dipeptidase A/metabolism , Prescription Drugs/pharmacology , Small Molecule Libraries/pharmacology , Angiotensin II/metabolism , Angiotensin-Converting Enzyme 2 , Chromatography, High Pressure Liquid , Diminazene/chemistry , Diminazene/metabolism , Dose-Response Relationship, Drug , Humans , Hypertension/drug therapy , Hypertension/physiopathology , Kinetics , Models, Molecular , Peptides/analysis , Peptides/chemistry , Peptidyl-Dipeptidase A/chemistry , Prescription Drugs/chemistry , Prescription Drugs/metabolism , Protein Binding , Small Molecule Libraries/chemistry , Small Molecule Libraries/metabolism , Substrate Specificity , Thermodynamics , United States , United States Food and Drug Administration
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