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1.
STAR Protoc ; 2(1): 100316, 2021 03 19.
Article in English | MEDLINE | ID: mdl-33659899

ABSTRACT

N-glycosylation is a fundamental post-translational protein modification in the endoplasmic reticulum of eukaryotic cells. The biosynthetic and catabolic flux of N-glycans in eukaryotic cells has long been analyzed by metabolic labeling using radiolabeled sugars. Here, we introduce a non-radiolabeling protocol for the isolation, structural determination, and quantification of N-glycan precursors, dolichol-linked oligosaccharides, and the related metabolites, including phosphorylated oligosaccharides and nucleotide sugars. Our protocol allows for capturing of the biosynthesis and degradation of N-glycan precursors at steady state. For complete details on the use and execution of this protocol, please refer to Harada et al. (2013), Harada et al. (2020), and Nakajima et al. (2013).


Subject(s)
Chromatography, High Pressure Liquid/methods , Mass Spectrometry/methods , Polysaccharides/biosynthesis , Animals , Chromatography, Liquid/methods , Dolichols/biosynthesis , Endoplasmic Reticulum/metabolism , Eukaryotic Cells/metabolism , Glycosylation , Humans , Mammals/metabolism , Oligosaccharides/chemistry , Phosphorylation , Polysaccharides/chemistry , Polysaccharides/metabolism , Protein Processing, Post-Translational/physiology
2.
Plant Sci ; 303: 110773, 2021 Feb.
Article in English | MEDLINE | ID: mdl-33487357

ABSTRACT

Dolichol is an essential polyisoprenoid within the endoplasmic reticulum of all eukaryotes. It serves as a membrane bound anchor onto which N-glycans are assembled prior to being transferred to nascent polypeptides, many of which enter the secretory pathway. Historically, it has been posited that the accumulation of dolichol represents the 'rate-limiting' step in the evolutionary conserved process of N-glycosylation, which ultimately affects the efficacy of approximately one fifth of the entire eukaryotic proteome. Therefore, this study aimed to enhance dolichol accumulation by manipulating the enzymes involved in its biosynthesis using an established Nicotiana benthamiana platform. Co-expression of a Solanum lycopersicum (tomato) cis-prenyltransferase (CPT) and its cognate partner protein, CPT binding protein (CPTBP), that catalyze the antepenultimate step in dolichol biosynthesis led to a 400-fold increase in the levels of long-chain polyprenols but resulted in only modest increases in dolichol accumulation. However, when combined with a newly characterized tomato polyprenol reductase, dolichol biosynthesis was enhanced by approximately 20-fold. We provide further evidence that in the aquatic macrophyte, Lemna gibba, dolichol is derived exclusively from the mevalonic acid (MVA) pathway with little participation from the evolutionary co-adopted non-MVA pathway. Taken together these results indicate that to effectively enhance the in planta accumulation of dolichol, coordinated synthesis and reduction of polyprenol to dolichol, is strictly required.


Subject(s)
Dolichols/biosynthesis , Nicotiana/metabolism , Oxidoreductases/metabolism , Plant Proteins/metabolism , Solanum lycopersicum/enzymology , Solanum lycopersicum/genetics , Solanum lycopersicum/metabolism , Metabolic Networks and Pathways , Oxidoreductases/genetics , Phylogeny , Plant Proteins/genetics , Nicotiana/enzymology , Nicotiana/genetics , Transferases/metabolism
3.
Int J Mol Sci ; 23(1)2021 Dec 30.
Article in English | MEDLINE | ID: mdl-35008833

ABSTRACT

Protein glycosylation requires dolichyl phosphate as a carbohydrate carrier. Dolichols are α-saturated polyprenols, and their saturation in S. cerevisiae is catalyzed by polyprenyl reductase Dfg10 together with some other unknown enzymes. The aim of this study was to identify such enzymes in Candida. The Dfg10 polyprenyl reductase from S. cerevisiae comprises a C-terminal 3-oxo-5-alpha-steroid 4-dehydrogenase domain. Alignment analysis revealed such a domain in two ORFs (orf19.209 and orf19.3293) from C. albicans, which were similar, respectively, to Dfg10 polyprenyl reductase and Tsc13 enoyl-transferase from S. cerevisiae. Deletion of orf19.209 in Candida impaired saturation of polyprenols. The Tsc13 homologue turned out not to be capable of saturating polyprenols, but limiting its expression reduce the cellular level of dolichols and polyprenols. This reduction was not due to a decreased expression of genes encoding cis-prenyltransferases from the dolichol branch but to a lower expression of genes encoding enzymes of the early stages of the mevalonate pathway. Despite the resulting lower consumption of acetyl-CoA, the sole precursor of the mevalonate pathway, it was not redirected towards fatty acid synthesis or elongation. Lowering the expression of TSC13 decreased the expression of the ACC1 gene encoding acetyl-CoA carboxylase, the key regulatory enzyme of fatty acid synthesis and elongation.


Subject(s)
Candida albicans/metabolism , Dolichols/biosynthesis , Fatty Acids/metabolism , Acetyl Coenzyme A/metabolism , Amino Acid Sequence , Candida albicans/genetics , Fungal Proteins/chemistry , Fungal Proteins/genetics , Fungal Proteins/metabolism , Gene Expression Regulation, Fungal , Genes, Fungal , Humans , Hyphae/growth & development , Mevalonic Acid/metabolism , Mutation/genetics , Phylogeny , Polyprenols/metabolism , RNA, Messenger/genetics , RNA, Messenger/metabolism , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Substrate Specificity
4.
Sci Rep ; 10(1): 13264, 2020 08 06.
Article in English | MEDLINE | ID: mdl-32764679

ABSTRACT

The cis-polyisoprenoid lipids namely polyprenols, dolichols and their derivatives are linear polymers of several isoprene units. In eukaryotes, polyprenols and dolichols are synthesized as a mixture of four or more homologues of different length with one or two predominant species with sizes varying among organisms. Interestingly, co-occurrence of polyprenols and dolichols, i.e. detection of a dolichol along with significant levels of its precursor polyprenol, are unusual in eukaryotic cells. Our metabolomics studies revealed that cis-polyisoprenoids are more diverse in the malaria parasite Plasmodium falciparum than previously postulated as we uncovered active de novo biosynthesis and substantial levels of accumulation of polyprenols and dolichols of 15 to 19 isoprene units. A distinctive polyprenol and dolichol profile both within the intraerythrocytic asexual cycle and between asexual and gametocyte stages was observed suggesting that cis-polyisoprenoid biosynthesis changes throughout parasite's development. Moreover, we confirmed the presence of an active cis-prenyltransferase (PfCPT) and that dolichol biosynthesis occurs via reduction of the polyprenol to dolichol by an active polyprenol reductase (PfPPRD) in the malaria parasite.


Subject(s)
Dolichols/isolation & purification , Metabolomics/methods , Plasmodium falciparum/growth & development , Biosynthetic Pathways , Dolichols/biosynthesis , Gene Expression Regulation, Developmental , Plasmodium falciparum/metabolism , Polyprenols/isolation & purification , Polyprenols/metabolism , Protozoan Proteins/genetics
5.
J Cell Mol Med ; 24(14): 7697-7705, 2020 07.
Article in English | MEDLINE | ID: mdl-32542927

ABSTRACT

Neurite outgrowth inhibitor-B (Nogo-B) is a membrane protein which is extensively expressed in multiple organs, especially in endothelial cells and vascular smooth muscle cells of blood vessels and belongs to the reticulon protein family. Notably, its specific receptor, Nogo-B receptor (NgBR), encoded by NUS1, has been implicated in many crucial cellular processes, such as cholesterol trafficking, lipid metabolism, dolichol synthesis, protein N-glycosylation, vascular remodelling, angiogenesis, tumorigenesis and neurodevelopment. In recent years, accumulating studies have demonstrated the statistically significant changes of NgBR expression levels in human diseases, including Niemann-Pick type C disease, fatty liver, congenital disorders of glycosylation, persistent pulmonary hypertension of the newborn, invasive ductal breast carcinoma, malignant melanoma, non-small cell lung carcinoma, paediatric epilepsy and Parkinson's disease. Besides, both the in vitro and in vivo studies have shown that NgBR overexpression or knockdown contribute to the alteration of various pathophysiological processes. Thus, there is a broad development potential in therapeutic strategies by modifying the expression levels of NgBR.


Subject(s)
Receptors, Cell Surface/genetics , Receptors, Cell Surface/metabolism , Animals , Biological Transport , Cell Transformation, Neoplastic/genetics , Cell Transformation, Neoplastic/metabolism , Cholesterol/metabolism , Disease Susceptibility , Dolichols/biosynthesis , Gene Expression Regulation , Glycosylation , Humans , Lipid Metabolism , Nervous System/metabolism , Nogo Proteins/genetics , Nogo Proteins/metabolism , Protein Binding , Receptors, Cell Surface/chemistry , Research/trends , Signal Transduction
6.
Int J Mol Sci ; 20(20)2019 Oct 12.
Article in English | MEDLINE | ID: mdl-31614738

ABSTRACT

The essential role of dolichyl phosphate (DolP) as a carbohydrate carrier during protein N-glycosylation is well established. The cellular pool of DolP is derived from de novo synthesis in the dolichol branch of the mevalonate pathway and from recycling of DolPP after each cycle of N-glycosylation, when the oligosaccharide is transferred from the lipid carrier to the protein and DolPP is released and then dephosphorylated. In Saccharomyces cerevisiae, the dephosphorylation of DolPP is known to be catalyzed by the Cwh8p protein. To establish the role of the Cwh8p orthologue in another distantly related yeast species, Candida albicans, we studied its mutant devoid of the CaCWH8 gene. A double Cacwh8∆/Cacwh8∆ strain was constructed by the URA-blaster method. As in S. cerevisiae, the mutant was impaired in DolPP recycling. This defect, however, was accompanied by an elevation of cis-prenyltransferase activity and higher de novo production of dolichols. Despite these compensatory changes, protein glycosylation, cell wall integrity, filamentous growth, and biofilm formation were impaired in the mutant. These results suggest that the defects are not due to the lack of DolP for the protein N-glycosylation but rather that the activity of oligosacharyltransferase could be inhibited by the excess DolPP accumulating in the mutant.


Subject(s)
Candida albicans/metabolism , Dolichols/biosynthesis , Fungal Proteins/genetics , Polyisoprenyl Phosphate Oligosaccharides/metabolism , Protein Processing, Post-Translational , Pyrophosphatases/genetics , Candida albicans/growth & development , Cell Wall/metabolism , Dolichols/genetics , Fungal Proteins/metabolism , Glycosylation , Morphogenesis , Pyrophosphatases/metabolism
7.
Glycobiology ; 28(10): 741-753, 2018 10 01.
Article in English | MEDLINE | ID: mdl-29939232

ABSTRACT

In eukaryotes, the biosynthesis of a highly conserved dolichol-linked oligosaccharide (DLO) precursor Glc3Man9GlcNAc2-pyrophosphate-dolichol (PP-Dol) begins on the cytoplasmic face of the endoplasmic reticulum (ER) and ends within the lumen. Two functionally distinguished heteromeric glycosyltransferase (GTase) complexes are responsible for the cytosolic DLO assembly. Alg1, a ß-1, 4 mannosyltransferase (MTase) physically interacts with Alg2 and Alg11 proteins to form the multienzyme complex which catalyzes the addition of all five mannose to generate the Man5GlcNAc2-PP-Dol intermediate. Despite the fact that Alg1 plays a central role in the formation of the multi-MTase has been confirmed, the topological information of Alg1 including the molecular mechanism of membrane association are still poorly understood. Using a combination of bioinformatics and biological approaches, we have undertaken a structural and functional study on Alg1 protein, in which the enzymatic activities of Alg1 and its variants were monitored by a complementation assay using the GALpr-ALG1 yeast strain, and further confirmed by a liquid chromatography-mass spectrometry-based in vitro quantitative assay. Computational and experimental evidence confirmed Alg1 shares structure similarity with Alg13/14 complex, which has been defined as a membrane-associated GT-B GTase. Particularly, we provide clear evidence that the N-terminal transmembrane domain including the following positively charged amino acids and an N-terminal amphiphilic-like α helix domain exposed on the protein surface strictly coordinate the Alg1 orientation on the ER membrane. This work provides detailed membrane topology of Alg1 and further reveals its biological importance at the spatial aspect in coordination of cytosolic DLO biosynthesis.


Subject(s)
Cell Membrane/metabolism , Dolichols/biosynthesis , Mannosyltransferases/metabolism , Oligosaccharides/biosynthesis , Saccharomyces cerevisiae/metabolism , Cell Membrane/chemistry , Dolichols/chemistry , Mannosyltransferases/chemistry , Mannosyltransferases/genetics , Oligosaccharides/chemistry , Protein Conformation , Saccharomyces cerevisiae/cytology
8.
Biochim Biophys Acta Bioenerg ; 1859(1): 1-7, 2018 Jan.
Article in English | MEDLINE | ID: mdl-29031613

ABSTRACT

Missense mutations of the human mitochondrial citrate carrier, encoded by the SLC25A1 gene, lead to an autosomal recessive neurometabolic disorder characterised by neonatal-onset encephalopathy with severe muscular weakness, intractable seizures, respiratory distress, and lack of psychomotor development, often resulting in early death. Here, we have measured the effect of all twelve known pathogenic mutations on the transport activity. The results show that nine mutations abolish transport of citrate completely, whereas the other three reduce the transport rate by >70%, indicating that impaired citrate transport is the most likely primary cause of the disease. Some mutations may be detrimental to the structure of the carrier, whereas others may impair key functional elements, such as the substrate binding site and the salt bridge network on the matrix side of the carrier. To understand the consequences of impaired citrate transport on metabolism, the substrate specificity was also determined, showing that the human citrate carrier predominantly transports citrate, isocitrate, cis-aconitate, phosphoenolpyruvate and malate. Although D-2- and L-2 hydroxyglutaric aciduria is a metabolic hallmark of the disease, it is unlikely that the citrate carrier plays a significant role in the removal of hydroxyglutarate from the cytosol for oxidation to oxoglutarate in the mitochondrial matrix. In contrast, computer simulations of central metabolism predict that the export of citrate from the mitochondrion cannot be fully compensated by other pathways, restricting the cytosolic production of acetyl-CoA that is required for the synthesis of lipids, sterols, dolichols and ubiquinone, which in turn explains the severe disease phenotypes.


Subject(s)
Anion Transport Proteins , Citric Acid/metabolism , Computer Simulation , Dolichols , Mitochondrial Proteins , Models, Biological , Mutation, Missense , Sterols , Ubiquinone , Anion Transport Proteins/chemistry , Anion Transport Proteins/genetics , Anion Transport Proteins/metabolism , Biological Transport, Active/genetics , Brain Diseases, Metabolic, Inborn/enzymology , Brain Diseases, Metabolic, Inborn/genetics , Catalytic Domain , Dolichols/biosynthesis , Dolichols/chemistry , Dolichols/genetics , Humans , Mitochondrial Proteins/chemistry , Mitochondrial Proteins/genetics , Mitochondrial Proteins/metabolism , Organic Anion Transporters , Sterols/biosynthesis , Sterols/chemistry , Sterols/metabolism , Ubiquinone/biosynthesis , Ubiquinone/chemistry , Ubiquinone/genetics
9.
Genetics ; 207(4): 1371-1386, 2017 12.
Article in English | MEDLINE | ID: mdl-28978675

ABSTRACT

Dolichols are isoprenoid lipids of varying length that act as sugar carriers in glycosylation reactions in the endoplasmic reticulum. In Saccharomyces cerevisiae, there are two cis-prenyltransferases that synthesize polyprenol-an essential precursor to dolichol. These enzymes are heterodimers composed of Nus1 and either Rer2 or Srt1. Rer2-Nus1 and Srt1-Nus1 can both generate dolichol in vegetative cells, but srt1∆ cells grow normally while rer2∆ grows very slowly, indicating that Rer2-Nus1 is the primary enzyme used in mitotically dividing cells. In contrast, SRT1 performs an important function in sporulating cells, where the haploid genomes created by meiosis are packaged into spores. The spore wall is a multilaminar structure and SRT1 is required for the generation of the outer chitosan and dityrosine layers of the spore wall. Srt1 specifically localizes to lipid droplets associated with spore walls, and, during sporulation there is an SRT1-dependent increase in long-chain polyprenols and dolichols in these lipid droplets. Synthesis of chitin by Chs3, the chitin synthase responsible for chitosan layer formation, is dependent on the cis-prenyltransferase activity of Srt1, indicating that polyprenols are necessary to coordinate assembly of the spore wall layers. This work shows that a developmentally regulated cis-prenyltransferase can produce polyprenols that function in cellular processes besides protein glycosylation.


Subject(s)
Alkyl and Aryl Transferases/genetics , Chitin Synthase/genetics , Dolichols/genetics , Saccharomyces cerevisiae Proteins/genetics , Spores, Fungal/genetics , Cell Wall/genetics , Chitin/biosynthesis , Chitin/genetics , Chitosan/chemistry , Chitosan/metabolism , Dimethylallyltranstransferase/genetics , Dolichols/biosynthesis , Endoplasmic Reticulum/genetics , Haploidy , Meiosis/genetics , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Spores, Fungal/growth & development , Tretinoin/analogs & derivatives , Tretinoin/metabolism
10.
Mol Biol Cell ; 27(8): 1220-34, 2016 Apr 15.
Article in English | MEDLINE | ID: mdl-26912795

ABSTRACT

Activation of the unfolded protein response (UPR) can be either adaptive or pathological. We term the pathological UPR that causes fatty liver disease a "stressed UPR." Here we investigate the mechanism of stressed UPR activation in zebrafish bearing a mutation in thetrappc11gene, which encodes a component of the transport protein particle (TRAPP) complex.trappc11mutants are characterized by secretory pathway defects, reflecting disruption of the TRAPP complex. In addition, we uncover a defect in protein glycosylation intrappc11mutants that is associated with reduced levels of lipid-linked oligosaccharides (LLOs) and compensatory up-regulation of genes in the terpenoid biosynthetic pathway that produces the LLO anchor dolichol. Treating wild-type larvae with terpenoid or LLO synthesis inhibitors phenocopies the stressed UPR seen intrappc11mutants and is synthetically lethal withtrappc11mutation. We propose that reduced LLO level causing hypoglycosylation is a mechanism of stressed UPR induction intrappc11mutants. Of importance, in human cells, depletion of TRAPPC11, but not other TRAPP components, causes protein hypoglycosylation, and lipid droplets accumulate in fibroblasts from patients with theTRAPPC11mutation. These data point to a previously unanticipated and conserved role for TRAPPC11 in LLO biosynthesis and protein glycosylation in addition to its established function in vesicle trafficking.


Subject(s)
Oligosaccharides/metabolism , Unfolded Protein Response , Vesicular Transport Proteins/metabolism , Zebrafish Proteins/metabolism , Animals , Animals, Genetically Modified , Atorvastatin/pharmacology , Dolichols/biosynthesis , Dolichols/genetics , Glycosylation , Golgi Apparatus/genetics , Golgi Apparatus/metabolism , Humans , Larva/drug effects , Larva/metabolism , Lipids/chemistry , Liver/metabolism , Liver/pathology , Mutation , Oligosaccharides/chemistry , Terpenes/metabolism , Terpenes/pharmacology , Unfolded Protein Response/drug effects , Unfolded Protein Response/genetics , Vesicular Transport Proteins/genetics , Zebrafish/genetics , Zebrafish Proteins/genetics
11.
Plant J ; 82(6): 903-914, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25899081

ABSTRACT

Dolichol plays an indispensable role in the N-glycosylation of eukaryotic proteins. As proteins enter the secretory pathway they are decorated by a 'glycan', which is preassembled onto a membrane-anchored dolichol molecule embedded within the endoplasmic reticulum (ER). Genetic and biochemical evidence in yeast and animals indicate that a cis-prenyltransferase (CPT) is required for dolichol synthesis, but also point to other factor(s) that could be involved. In this study, RNAi-mediated suppression of one member of the tomato CPT family (SlCPT3) resulted in a ~60% decrease in dolichol content. We further show that the involvement of SlCPT3 in dolichol biosynthesis requires the participation of a distantly related partner protein, designated as CPT-binding protein (SlCPTBP), which is a close homolog of the human Nogo-B receptor. Yeast two-hybrid and co-immunoprecipitation assays demonstrate that SlCPT3 and its partner protein interact in vivo and that both SlCPT3 and SlCPTBP are required to complement the growth defects and dolichol deficiency of the yeast dolichol mutant, rer2∆. Co-expression of SlCPT3 and SlCPTBP in yeast and in E. coli confirmed that dolichol synthase activity strictly requires both proteins. Finally, organelle isolation and in vivo localization of fluorescent protein fusions showed that both SlCPT3 and SlCPTBP localize to the ER, the site of dolichol accumulation and synthesis in eukaryotes.


Subject(s)
Dolichols/biosynthesis , Multienzyme Complexes/metabolism , Plant Proteins/metabolism , Solanum lycopersicum/metabolism , Dimethylallyltranstransferase/genetics , Endoplasmic Reticulum/metabolism , Escherichia coli/genetics , Evolution, Molecular , Genetic Complementation Test , Solanum lycopersicum/genetics , Multienzyme Complexes/genetics , Plant Proteins/genetics , RNA Interference , Receptors, Cell Surface/genetics , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae Proteins/genetics , Transferases/genetics , Transferases/metabolism
12.
Biochem Biophys Res Commun ; 453(2): 277-81, 2014 Oct 17.
Article in English | MEDLINE | ID: mdl-24866245

ABSTRACT

Polyisoprenoid alcohols from the livers of temperate sea fish (skipjack tuna, chub mackerel, red sea bream and rainbow trout) were analyzed by using 2D-TLC, electrospray ionization (ESI) mass spectrometry and NMR methods. Dolichols (Dols) were detected in all the fish livers, and they were composed of 19-22 isoprene units with Dol-20 as the predominant prenolog. In addition, Dol-like family compounds were found by using 2D-TLC on skipjack tuna samples. These compounds were found to have a larger molecular mass than the Dol family by 16 mass units. NMR analysis indicated that the Dol-like compounds were consistent with the terminal epoxide structure of Dols (the ω-oxirane derivatives of Dols). ESI analysis also revealed the occurrence of dehydro molecules in both Dols and epoxy Dols (Dol-like) fractions. The occurrence of epoxy Dols in fish is discussed in context with the biosynthesis of Dols, which is responsible for forming Dol phosphate, which lead to Dol-PP-oligosaccharide.


Subject(s)
Dolichols/analogs & derivatives , Liver/metabolism , Tuna/metabolism , Animals , Chromatography, Thin Layer , Dolichols/biosynthesis , Dolichols/chemistry , Epoxy Compounds/chemistry , Epoxy Compounds/metabolism , Magnetic Resonance Spectroscopy , Male , Metabolic Networks and Pathways , Oncorhynchus mykiss/metabolism , Perciformes/metabolism , Sea Bream/metabolism , Spectrometry, Mass, Electrospray Ionization
13.
J Lipid Res ; 55(7): 1465-77, 2014 07.
Article in English | MEDLINE | ID: mdl-24868093

ABSTRACT

Accurate protein inventories are essential for understanding an organelle's functions. The lipid droplet (LD) is a ubiquitous intracellular organelle with major functions in lipid storage and metabolism. LDs differ from other organelles because they are bounded by a surface monolayer, presenting unique features for protein targeting to LDs. Many proteins of varied functions have been found in purified LD fractions by proteomics. While these studies have become increasingly sensitive, it is often unclear which of the identified proteins are specific to LDs. Here we used protein correlation profiling to identify 35 proteins that specifically enrich with LD fractions of Saccharomyces cerevisiae Of these candidates, 30 fluorophore-tagged proteins localize to LDs by microscopy, including six proteins, several with human orthologs linked to diseases, which we newly identify as LD proteins (Cab5, Rer2, Say1, Tsc10, YKL047W, and YPR147C). Two of these proteins, Say1, a sterol deacetylase, and Rer2, a cis-isoprenyl transferase, are enzymes involved in sterol and polyprenol metabolism, respectively, and we show their activities are present in LD fractions. Our results provide a highly specific list of yeast LD proteins and reveal that the vast majority of these proteins are involved in lipid metabolism.


Subject(s)
Dolichols/biosynthesis , Lipid Droplets/metabolism , Lipid Metabolism/physiology , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Sterols/metabolism , Acetylation , Dolichols/genetics , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae Proteins/genetics
14.
J Cell Biochem ; 115(4): 754-62, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24243557

ABSTRACT

Deficiency in N-linked protein glycosylation is a long-known characteristic of alcoholic liver disease and congenital disorders of glycosylation. Previous investigations of ethanol-induced glycosylation deficiency demonstrated perturbations in the early steps of substrate synthesis and in the final steps of capping N-linked glycans in the Golgi. The significance of the biosynthesis of N-glycan precursors in the endoplasmic reticulum, however, has not yet been addressed in alcoholic liver disease. Ethanol-metabolizing hepatoma cells were treated with increasing concentrations of ethanol. Transcript analysis of genes involved in the biosynthesis of N-glycans, activity assays of related enzymes, dolichol-phosphate quantification, and analysis of dolichol-linked oligosaccharides were performed. Upon treatment of cells with ethanol, we found a decrease in the final N-glycan precursor Dol-PP-GlcNAc(2) Man(9) Glc(3) and in C95- and C100-dolichol-phosphate levels. Transcript analysis of genes involved in N-glycosylation showed a 17% decrease in expression levels of DPM1, a subunit of the dolichol-phosphate-mannose synthase, and an 8% increase in RPN2, a subunit of the oligosaccharyl transferase. Ethanol treatment decreases the biosynthesis of dolichol-phosphate. Consequently, the formation of N-glycan precursors is affected, resulting in an aberrant precursor assembly. Messenger RNA levels of genes involved in N-glycan biosynthesis are slightly affected by ethanol treatment, indicating that the assembly of N-glycan precursors is not regulated at the transcriptional level. This study confirms that ethanol impairs N-linked glycosylation by affecting dolichol biosynthesis leading to impaired dolichol-linked oligosaccharide assembly. Together our data help to explain the underglycosylation phenotype observed in alcoholic liver disease and congenital disorders of glycosylation.


Subject(s)
Dolichols/biosynthesis , Ethanol/pharmacology , Glycosylation/drug effects , Hepatocytes/drug effects , Hepatocytes/metabolism , Alcohol Dehydrogenase/genetics , Alcohol Dehydrogenase/metabolism , Carbohydrate Conformation , Cells, Cultured , Cytochrome P-450 CYP2E1/genetics , Cytochrome P-450 CYP2E1/metabolism , Dolichol Phosphates/metabolism , Dolichols/metabolism , Gene Expression Regulation/drug effects , Hexosyltransferases , Humans , Inactivation, Metabolic , Mannosyltransferases/metabolism , Oligosaccharides/chemistry , Oligosaccharides/metabolism , Polysaccharides/metabolism , Proteasome Endopeptidase Complex/metabolism , Transferrin/metabolism
15.
J Lipid Res ; 54(12): 3516-22, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24078709

ABSTRACT

We observed a characteristic shortening of plasma and urinary dolichols in retinitis pigmentosa (RP) patients carrying K42E and T206A mutations in the dehydrodolichol diphosphate synthase (DHDDS) gene, using liquid chromatography-mass spectrometry. Dolichol-18 (D18) became the dominant dolichol species in patients instead of dolichol-19 (D19) in normal individuals. The D18/D19 ratio was calculated and used as an index of dolichol length distribution. K42E/K42E and K42E/T206A patients have significantly higher plasma and urinary D18/D19 ratios than K42E and T206A carriers. The ratios of carriers are significantly higher than normal individuals. Receiver operating characteristic (ROC) analysis shows that plasma and urinary D18/D19 ratios can unambiguously discriminate patients from carriers, and carriers from normal individuals. Dolichol analysis also provides evidence that the T206A mutation is RP-causative. The methodologies and procedures used for dolichol profiling are reliable, high throughput, and cost effective. Dolichol profiling, complementary to genotyping, can be readily adapted as a test in the clinic not only for the diagnosis of patients but also for identification of carriers with DHDDS or other genetic mutations that may impair dolichol biosynthesis.


Subject(s)
Dolichols/biosynthesis , Dolichols/chemistry , Retinitis Pigmentosa/metabolism , Adolescent , Adult , Aged , Aged, 80 and over , Alkyl and Aryl Transferases/genetics , Biomarkers/chemistry , Biomarkers/metabolism , Child , Dolichols/blood , Dolichols/urine , Female , Humans , Male , Middle Aged , Mutation , Retinitis Pigmentosa/blood , Retinitis Pigmentosa/genetics , Retinitis Pigmentosa/urine , Young Adult
16.
Plant J ; 73(4): 640-52, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23134568

ABSTRACT

cis-prenyltransferases (CPTs) are predicted to be involved in the synthesis of long-chain polyisoprenoids, all with five or more isoprene (C5) units. Recently, we identified a short-chain CPT, neryl diphosphate synthase (NDPS1), in tomato (Solanum lycopersicum). Here, we searched the tomato genome and identified and characterized its entire CPT gene family, which comprises seven members (SlCPT1-7, with NDPS1 designated as SlCPT1). Six of the SlCPT genes encode proteins with N-terminal targeting sequences, which, when fused to GFP, mediated GFP transport to the plastids of Arabidopsis protoplasts. The SlCPT3-GFP fusion protein was localized to the cytosol. Enzymatic characterization of recombinant SlCPT proteins demonstrated that SlCPT6 produces Z,Z-FPP, and SlCPT2 catalyzes the formation of nerylneryl diphosphate while SlCPT4, SlCPT5 and SlCPT7 synthesize longer-chain products (C25-C55). Although no in vitro activity was demonstrated for SlCPT3, its expression in the Saccharomyces cerevisiae dolichol biosynthesis mutant (rer2) complemented the temperature-sensitive growth defect. Transcripts of SlCPT2, SlCPT4, SlCPT5 and SlCPT7 are present at low levels in multiple tissues, SlCPT6 is exclusively expressed in red fruit and roots, and SlCPT1, SlCPT3 and SlCPT7 are highly expressed in trichomes. RNAi-mediated suppression of NDPS1 led to a large decrease in ß-phellandrene (which is produced from neryl diphosphate), with greater reductions achieved with the general 35S promoter compared to the trichome-specific MKS1 promoter. Phylogenetic analysis revealed CPT gene families in both eudicots and monocots, and showed that all the short-chain CPT genes from tomato (SlCPT1, SlCPT2 and SlCPT6) are closely linked to terpene synthase gene clusters.


Subject(s)
Gene Expression Regulation, Plant , Genes, Plant , Multigene Family , Solanum lycopersicum/enzymology , Transferases/genetics , Arabidopsis/genetics , Arabidopsis/metabolism , Biological Transport , Cyclohexane Monoterpenes , Cyclohexenes/metabolism , Cytosol/metabolism , DNA, Complementary/genetics , DNA, Complementary/metabolism , Dolichols/biosynthesis , Enzyme Activation , Enzyme Assays , Evolution, Molecular , Genetic Complementation Test , Green Fluorescent Proteins/metabolism , Solanum lycopersicum/genetics , Monoterpenes/metabolism , Open Reading Frames , Phylogeny , Plant Proteins/classification , Plant Proteins/genetics , Plant Proteins/metabolism , Plastids/genetics , Plastids/metabolism , Promoter Regions, Genetic , Protoplasts/cytology , Protoplasts/metabolism , RNA Interference , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Transferases/metabolism
17.
Chembiochem ; 13(3): 392-401, 2012 Feb 13.
Article in English | MEDLINE | ID: mdl-22262650

ABSTRACT

In a cell-based assay for novel inhibitors, we have discovered that two glycosides of 5-thiomannose, each containing an interglycosidic nitrogen atom, prevented the correct zymogen processing of the prohormone proopiomelanocortinin (POMC) and the transcription factor sterol-regulatory element-binding protein-2 (SREBP-2) in mouse pituitary cells and Chinese hamster ovary (CHO) cells, respectively. In the case of SREBP-2, these effects were correlated with the altered N-linked glycosylation of subtilisin/kexin-like isozyme-1 (SKI-1), the protease responsible for SREBP-2 processing under sterol-limiting conditions. Further examination of the effects of these compounds in CHO cells showed that they cause extensive protein hypoglycosylation in a manner similar to type I congenital disorders of glycosylation (CDGs) since the remaining N-glycans in treated cells were complete (normal) structures. The under-glycosylation of glycoproteins in 5-thiomannoside-treated cells is now shown to be caused by the compromised biosynthesis of the dolichol-linked oligosaccharide (DLO) N-glycosylation donor, although the nucleotide sugars required for the synthesis of DLOs were neither reduced under these conditions, nor were their effects reversed upon the addition of exogenous mannose. Analysis of DLO intermediates by fluorophore-assisted carbohydrate electrophoresis demonstrated that 5-thiomannose-containing glycosides block DLO biosynthesis most likely at a stage prior to the GlcNAc(2) Man(3) intermediate, on the cytosolic face of the endoplasmic reticulum.


Subject(s)
Congenital Disorders of Glycosylation/metabolism , Dolichols/antagonists & inhibitors , Mannose/pharmacology , Oligosaccharides/antagonists & inhibitors , Animals , CHO Cells , Cells, Cultured , Congenital Disorders of Glycosylation/prevention & control , Cricetinae , Disease Models, Animal , Dolichols/biosynthesis , Dolichols/chemistry , Mannose/analogs & derivatives , Mannose/chemistry , Mice , Oligosaccharides/biosynthesis , Oligosaccharides/chemistry
18.
Mem Inst Oswaldo Cruz ; 106 Suppl 1: 134-41, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21881768

ABSTRACT

The development of new drugs is one strategy for malaria control. Biochemical pathways localised in the apicoplast of the parasite, such as the synthesis of isoprenic precursors, are excellent targets because they are different or absent in the human host. Isoprenoids are a large and highly diverse group of natural products with many functions and their synthesis is essential for the parasite's survival. During the last few years, the genes, enzymes, intermediates and mechanisms of this biosynthetic route have been elucidated. In this review, we comment on some aspects of the methylerythritol phosphate pathway and discuss the presence of diverse isoprenic products such as dolichol, ubiquinone, carotenoids, menaquinone and isoprenylated proteins, which are biosynthesised during the intraerythrocytic stages of Plasmodium falciparum.


Subject(s)
Erythrocytes/parasitology , Plasmodium falciparum/metabolism , Protein Prenylation/physiology , Terpenes/metabolism , Carotenoids/biosynthesis , Dolichols/biosynthesis , Humans , Plasmodium falciparum/growth & development , Ubiquinone/biosynthesis , Vitamin K 2/metabolism
19.
Mem. Inst. Oswaldo Cruz ; 106(supl.1): 134-141, Aug. 2011. ilus
Article in English | LILACS | ID: lil-597255

ABSTRACT

The development of new drugs is one strategy for malaria control. Biochemical pathways localised in the apicoplast of the parasite, such as the synthesis of isoprenic precursors, are excellent targets because they are different or absent in the human host. Isoprenoids are a large and highly diverse group of natural products with many functions and their synthesis is essential for the parasite's survival. During the last few years, the genes, enzymes, intermediates and mechanisms of this biosynthetic route have been elucidated. In this review, we comment on some aspects of the methylerythritol phosphate pathway and discuss the presence of diverse isoprenic products such as dolichol, ubiquinone, carotenoids, menaquinone and isoprenylated proteins, which are biosynthesised during the intraerythrocytic stages of Plasmodium falciparum.


Subject(s)
Humans , Erythrocytes , Plasmodium falciparum , Protein Prenylation/physiology , Terpenes , Carotenoids/biosynthesis , Dolichols/biosynthesis , Plasmodium falciparum/growth & development , Ubiquinone/biosynthesis
20.
EMBO J ; 30(12): 2490-500, 2011 May 13.
Article in English | MEDLINE | ID: mdl-21572394

ABSTRACT

Dolichol monophosphate (Dol-P) functions as an obligate glycosyl carrier lipid in protein glycosylation reactions. Dol-P is synthesized by the successive condensation of isopentenyl diphosphate (IPP), with farnesyl diphosphate catalysed by a cis-isoprenyltransferase (cis-IPTase) activity. Despite the recognition of cis-IPTase activity 40 years ago and the molecular cloning of the human cDNA encoding the mammalian enzyme, the molecular machinery responsible for regulating this activity remains incompletely understood. Here, we identify Nogo-B receptor (NgBR) as an essential component of the Dol-P biosynthetic machinery. Loss of NgBR results in a robust deficit in cis-IPTase activity and Dol-P production, leading to diminished levels of dolichol-linked oligosaccharides and a broad reduction in protein N-glycosylation. NgBR interacts with the previously identified cis-IPTase hCIT, enhances hCIT protein stability, and promotes Dol-P production. Identification of NgBR as a component of the cis-IPTase machinery yields insights into the regulation of dolichol biosynthesis.


Subject(s)
Dolichols/biosynthesis , Receptors, Cell Surface/physiology , Alkyl and Aryl Transferases/antagonists & inhibitors , Alkyl and Aryl Transferases/deficiency , Alkyl and Aryl Transferases/metabolism , Animals , COS Cells , Carrier Proteins/metabolism , Chlorocebus aethiops , Dolichol Phosphates/biosynthesis , Dolichol Phosphates/deficiency , Dolichols/deficiency , Enzyme Activation/genetics , Glycoproteins/metabolism , Humans , Protein Conformation , Receptors, Cell Surface/chemistry , Receptors, Cell Surface/deficiency , Vesicular Transport Proteins
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