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1.
Int J Mol Sci ; 22(21)2021 Oct 20.
Article in English | MEDLINE | ID: mdl-34768769

ABSTRACT

Human amylin or islet amyloid polypeptide (hIAPP) is synthesized in the pancreatic ß-cells and has been shown to contribute to the pathogenesis of type 2 diabetes (T2D) in vitro and in vivo. This study compared amylin oligomerization/expression and signal transduction under endoplasmic reticulum (ER) stress and oxidative stress. pCMV-hIAPP-overexpressing INS-1E cells presented different patterns of amylin oligomerization/expression under ER stress and oxidative stress. Amylin oligomerization/expression under ER stress showed three amylin oligomers of less than 15 kDa size in pCMV-hIAPP-overexpressing cells, while one band was detected under oxidative stress. Under ER stress conditions, HIF1α, p-ERK, CHOP, Cu/Zn-SOD, and Bax were significantly increased in pCMV-hIAPP-overexpressing cells compared to the pCMV-Entry-expressing cells (control), whereas p-Akt, p-mTOR, Mn-SOD, catalase, and Bcl-2 were significantly decreased. Under oxidative stress conditions, HIF1α, p-ERK, CHOP, Mn-SOD, catalase, and Bcl-2 were significantly reduced in pCMV-hIAPP-overexpressing cells compared to the control, whereas p-mTOR, Cu/Zn-SOD, and Bax were significantly increased. In mitochondrial oxidative phosphorylation (OXPHOS), the mitochondrial complex I and complex IV were significantly decreased under ER stress conditions and significantly increased under oxidative stress conditions in pCMV-hIAPP-overexpressing cells compared to the control. The present study results demonstrate that amylin undergoes oligomerization under ER stress in pCMV-hIAPP-overexpressing cells. In addition, human amylin overexpression under ER stress in the pancreatic ß cells may enhance amylin protein aggregation, resulting in ß-cell dysfunction.


Subject(s)
Endoplasmic Reticulum Stress , Insulin-Secreting Cells/metabolism , Islet Amyloid Polypeptide/biosynthesis , Islet Amyloid Polypeptide/chemistry , Oxidative Stress , Animals , Catalase/metabolism , Cell Line , Cell Survival/genetics , Electron Transport Complex I/physiology , Electron Transport Complex IV/physiology , Extracellular Signal-Regulated MAP Kinases/metabolism , Humans , Hypoxia-Inducible Factor 1, alpha Subunit/metabolism , Oxidative Phosphorylation , Proto-Oncogene Proteins c-akt/metabolism , Proto-Oncogene Proteins c-bcl-2/metabolism , Rats , Signal Transduction/physiology , Superoxide Dismutase/metabolism , TOR Serine-Threonine Kinases/metabolism , Transcription Factor CHOP/metabolism , bcl-2-Associated X Protein/metabolism
2.
Proc Natl Acad Sci U S A ; 118(20)2021 05 18.
Article in English | MEDLINE | ID: mdl-33972444

ABSTRACT

In mammalian cells, cyanide is viewed as a cytotoxic agent, which exerts its effects through inhibition of mitochondrial Complex IV (Cytochrome C oxidase [CCOx]). However, the current report demonstrates that cyanide's effect on CCOx is biphasic; low (nanomolar to low-micromolar) concentrations stimulate CCOx activity, while higher (high-micromolar) concentrations produce the "classic" inhibitory effect. Low concentrations of cyanide stimulated mitochondrial electron transport and elevated intracellular adenosine triphosphate (ATP), resulting in the stimulation of cell proliferation. The stimulatory effect of cyanide on CCOx was associated with the removal of the constitutive, inhibitory glutathionylation on its catalytic 30- and 57-kDa subunits. Transfer of diluted Pseudomonas aeruginosa (a cyanide-producing bacterium) supernatants to mammalian cells stimulated cellular bioenergetics, while concentrated supernatants were inhibitory. These effects were absent with supernatants from mutant Pseudomonas lacking its cyanide-producing enzyme. These results raise the possibility that cyanide at low, endogenous levels serves regulatory purposes in mammals. Indeed, the expression of six putative mammalian cyanide-producing and/or -metabolizing enzymes was confirmed in HepG2 cells; one of them (myeloperoxidase) showed a biphasic regulation after cyanide exposure. Cyanide shares features with "classical" mammalian gasotransmitters NO, CO, and H2S and may be considered the fourth mammalian gasotransmitter.


Subject(s)
Cyanides/pharmacology , Electron Transport Complex IV/drug effects , Energy Metabolism/drug effects , Mitochondria/drug effects , Cyanides/metabolism , Electron Transport Complex IV/physiology , HCT116 Cells , HT29 Cells , Humans , Mitochondria/metabolism
3.
Brain Res ; 1751: 147193, 2021 01 15.
Article in English | MEDLINE | ID: mdl-33157100

ABSTRACT

Metabolic stress imposed by epileptic seizures can result in mitochondrial dysfunction, believed to act as positive feedback on epileptogenesis and seizure susceptibility. As the mechanism behind this positive feedback is unclear, the aim of the present study was to investigate the causal link between acute mitochondrial dysfunction and increased seizure susceptibility in hyperexcitable hippocampal networks. Following the induction of spontaneous interictal-like discharges, acute selective pharmacological blockade of either of the mitochondrial respiratory complexes (MRC) I-IV induced seizure-like events (SLE) in 78-100% of experiments. A similar result was obtained by uncoupling the oxidative phosphorylation (OXPHOS) but not by selective blockade of MRCV (ATP synthase) which did not induce SLE. The reactive oxygen species (ROS) scavenger 4-hydroxy-2,2,6,6-tetramethylpiperidine 1-oxyl (tempol, 2 mM) significantly reduced the proconvulsant effect of blocking MRCI but did not reduce the proconvulsant effect of OXPHOS uncoupling. These findings indicate that acute mitochondrial dysfunction can lead to a convulsive state within a short timeframe, and that increased ROS production makes substantial contribution to such induction in addition to other mitochondrial related factors, which appears to be independent of changes in ROS and ATP production.


Subject(s)
Mitochondria/metabolism , Seizures/metabolism , Animals , Electron Transport Complex I/antagonists & inhibitors , Electron Transport Complex I/physiology , Electron Transport Complex IV/antagonists & inhibitors , Electron Transport Complex IV/physiology , Epilepsy/etiology , Epilepsy/metabolism , Hippocampus/metabolism , Hippocampus/physiology , Male , Mitochondria/physiology , Nerve Net/metabolism , Nerve Net/physiology , Oxidative Phosphorylation/drug effects , Oxidative Stress/drug effects , Rats , Rats, Wistar , Reactive Oxygen Species/metabolism , Seizures/etiology , Seizures/physiopathology
4.
J Gerontol A Biol Sci Med Sci ; 76(5): 796-804, 2021 04 30.
Article in English | MEDLINE | ID: mdl-33257932

ABSTRACT

The role played by mitochondrial function in the aging process has been a subject of intense debate in the past few decades, as part of the efforts to understand the mechanistic basis of longevity. The mitochondrial oxidative stress theory of aging suggests that a progressive decay of this organelle's function leads to an exacerbation of oxidative stress, with a deleterious impact on mitochondrial structure and DNA, ultimately promoting aging. Among the traits suspected to be associated with longevity is the variation in the regulation of oxidative phosphorylation, potentially affecting the management of oxidative stress. Longitudinal studies using the framework of metabolic control analysis have shown age-related differences in the flux control of respiration, but this approach has seldom been taken on a comparative scale. Using 4 species of marine bivalves exhibiting a large range of maximum life span (from 28 years to 507 years), we report life-span-related differences in flux control at different steps of the electron transfer system. Increased longevity was characterized by a lower control by NADH (complex I-linked) and Succinate (complex II-linked) pathways, while respiration was strongly controlled by complex IV when compared to shorter-lived species. Complex III exerted strong control over respiration in all species. Furthermore, high longevity was associated with higher citrate synthase activity and lower ATP synthase activity. Relieving the control exerted by the electron entry pathways could be advantageous for reaching higher longevity, leading to increased control by complex IV, the final electron acceptor in the electron transfer system.


Subject(s)
Bivalvia/metabolism , Longevity/genetics , Mitochondria/metabolism , Animals , Bivalvia/genetics , Bivalvia/growth & development , Cell Respiration/physiology , Electron Transport/physiology , Electron Transport Complex IV/physiology , NAD/metabolism , Oxidative Stress/physiology , Succinic Acid/metabolism
5.
Cell Host Microbe ; 28(6): 780-788.e5, 2020 12 09.
Article in English | MEDLINE | ID: mdl-33053375

ABSTRACT

The intestinal epithelium separates host tissue and gut-associated microbial communities. During inflammation, the host releases reactive oxygen and nitrogen species as an antimicrobial response. The impact of these radicals on gut microbes is incompletely understood. We discovered that the cryptic appBCX genes, predicted to encode a cytochrome bd-II oxidase, conferred a fitness advantage for E. coli in chemical and genetic models of non-infectious colitis. This fitness advantage was absent in mice that lacked epithelial NADPH oxidase 1 (NOX1) activity. In laboratory growth experiments, supplementation with exogenous hydrogen peroxide enhanced E. coli growth through AppBCX-mediated respiration in a catalase-dependent manner. We conclude that epithelial-derived reactive oxygen species are degraded in the gut lumen, which gives rise to molecular oxygen that supports the aerobic respiration of E. coli. This work illustrates how epithelial host responses intersect with gut microbial metabolism in the context of gut inflammation.


Subject(s)
Electron Transport Complex IV/physiology , Escherichia coli/physiology , Inflammation/metabolism , Intestinal Mucosa/metabolism , NADPH Oxidase 1/metabolism , Reactive Oxygen Species/metabolism , Aerobiosis , Animals , Colitis/chemically induced , DNA, Bacterial , Disease Models, Animal , Escherichia coli Proteins/physiology , Female , Gastrointestinal Microbiome , Host Microbial Interactions , Hydrogen Peroxide/metabolism , Inflammation/microbiology , Male , Mice , Mice, Inbred BALB C , Mice, Inbred C57BL , Microbiota , NADPH Oxidase 1/genetics , Oxygen/metabolism
6.
Cancer Lett ; 492: 185-196, 2020 11 01.
Article in English | MEDLINE | ID: mdl-32758616

ABSTRACT

Breast cancer is the most common cancer among women worldwide, with 70% being estrogen receptor-positive (ER+). Although ER-targeted treatment is effective in treating ER + breast cancer, chemoresistance and metastasis still prevail. Outcome-predictable biomarkers can help improve patient prognosis. Through the analysis of the Array Express database, The Cancer Genome Atlas-Breast Cancer datasets, and breast tumor tissue array results, we found that cytochrome c oxidase subunit 5a (COX5A) was related to poor prognosis of ER + breast cancer. Further studies revealed that COX5A was positively associated with metastasis and chemoresistance in ER + breast cancer. In vitro experiments showed that knockdown of COX5A was accompanied by a decrease in ERα expression, cell cycle arrest, and epithelial-mesenchymal transition blockade, resulting in an inhibition of proliferation and invasion. Knockdown of COX5A enhanced the chemosensitivity of breast cancer cells by decreasing adenosine triphosphate and increasing reactive oxygen species levels. We report that miR-204 can target and inhibit the expression of COX5A, thus, reversing the functions of COX5A in ER + breast cancer cells. We found that COX5A may serve as a prognostic biomarker in ER + breast cancer.


Subject(s)
Breast Neoplasms/pathology , Electron Transport Complex IV/physiology , MicroRNAs/physiology , Receptors, Estrogen/analysis , Adult , Aged , Breast Neoplasms/chemistry , Breast Neoplasms/drug therapy , Cell Line, Tumor , Drug Resistance, Neoplasm , Electron Transport Complex IV/antagonists & inhibitors , Electron Transport Complex IV/genetics , Epithelial-Mesenchymal Transition , Female , Humans , Middle Aged , Neoplasm Invasiveness
7.
Plant Physiol Biochem ; 154: 248-259, 2020 Sep.
Article in English | MEDLINE | ID: mdl-32570012

ABSTRACT

The flexible plant mitochondrial electron transport chain with cytochrome c oxidase (COX) and alternative oxidase (AOX) pathways is known to be modulated by abiotic stress conditions. The effect of salinity stress on the mitochondrial electron transport chain and the importance of COX and AOX pathways for optimization of photosynthesis under salinity stress conditions is not clearly understood. In the current study, importance of COX and AOX pathways for photosynthetic performance of pea plants (Pisum sativum L. Pea Arkel cv) was analysed by using the mitochondrial electron transport chain inhibitors Antimycin A (AA) and salicylhydroxamic acid (SHAM) which restrict the electron flow through COX and AOX pathways respectively. Salinity stress resulted in decreased CO2 assimilation rates, leaf stomatal conductance, transpiration and leaf intercellular CO2 concentration in a stress dependent manner. Superimposition of leaves of salt stressed plants with AA and SHAM caused cellular H2O2 and O2- accumulation along with cell death. Additionally, aggravation in decrease of CO2 assimilation rates, leaf stomatal conductance, transpiration and leaf intercellular CO2 concentration upon superimposition with AA and SHAM during salinity stress suggests the importance of mitochondrial oxidative electron transport for photosynthesis. Increased expression of AOX1a and AOX2 transcripts along with AOX protein levels indicated up regulation of AOX pathway in leaves during salinity stress. Chlorophyll fluorescence measurements revealed enhanced damage to Photosystem (PS) II in the presence of AA and SHAM during salinity stress. Results suggested the beneficial role of COX and AOX pathways for optimal photosynthetic performance in pea leaves during salinity stress conditions.


Subject(s)
Electron Transport Complex IV/physiology , Mitochondrial Proteins/physiology , Oxidoreductases/physiology , Photosynthesis , Pisum sativum/enzymology , Plant Proteins/physiology , Salt Stress , Electron Transport , Hydrogen Peroxide , Plant Leaves/physiology
8.
Proc Natl Acad Sci U S A ; 117(17): 9329-9337, 2020 04 28.
Article in English | MEDLINE | ID: mdl-32291341

ABSTRACT

The organization of the mitochondrial electron transport chain proteins into supercomplexes (SCs) is now undisputed; however, their assembly process, or the role of differential expression isoforms, remain to be determined. In Saccharomyces cerevisiae, cytochrome c oxidase (CIV) forms SCs of varying stoichiometry with cytochrome bc1 (CIII). Recent studies have revealed, in normoxic growth conditions, an interface made exclusively by Cox5A, the only yeast respiratory protein that exists as one of two isoforms depending on oxygen levels. Here we present the cryo-EM structures of the III2-IV1 and III2-IV2 SCs containing the hypoxic isoform Cox5B solved at 3.4 and 2.8 Å, respectively. We show that the change of isoform does not affect SC formation or activity, and that SC stoichiometry is dictated by the level of CIII/CIV biosynthesis. Comparison of the CIV5B- and CIV5A-containing SC structures highlighted few differences, found mainly in the region of Cox5. Additional density was revealed in all SCs, independent of the CIV isoform, in a pocket formed by Cox1, Cox3, Cox12, and Cox13, away from the CIII-CIV interface. In the CIV5B-containing hypoxic SCs, this could be confidently assigned to the hypoxia-induced gene 1 (Hig1) type 2 protein Rcf2. With conserved residues in mammalian Hig1 proteins and Cox3/Cox12/Cox13 orthologs, we propose that Hig1 type 2 proteins are stoichiometric subunits of CIV, at least when within a III-IV SC.


Subject(s)
Electron Transport Complex III/metabolism , Electron Transport Complex IV/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Cryoelectron Microscopy/methods , Electron Transport Complex III/chemistry , Electron Transport Complex IV/chemistry , Electron Transport Complex IV/physiology , Hypoxia/metabolism , Mitochondria/chemistry , Mitochondria/metabolism , Mitochondrial Membranes/metabolism , Protein Isoforms , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/physiology
9.
Mol Biol Cell ; 31(1): 18-26, 2020 01 01.
Article in English | MEDLINE | ID: mdl-31746672

ABSTRACT

Mitochondrial cristae contain electron transport chain complexes and are distinct from the inner boundary membrane (IBM). While many details regarding the regulation of mitochondrial structure are known, the relationship between cristae structure and function during organelle development is not fully described. Here, we used serial-section tomography to characterize the formation of lamellar cristae in immature mitochondria during a period of dramatic mitochondrial development that occurs after Drosophila emergence as an adult. We found that the formation of lamellar cristae was associated with the gain of cytochrome c oxidase (COX) function, and the COX subunit, COX4, was localized predominantly to organized lamellar cristae. Interestingly, 3D tomography showed some COX-positive lamellar cristae were not connected to IBM. We hypothesize that some lamellar cristae may be organized by a vesicle germination process in the matrix, in addition to invagination of IBM. OXA1 protein, which mediates membrane insertion of COX proteins, was also localized to cristae and reticular structures isolated in the matrix additional to the IBM, suggesting that it may participate in the formation of vesicle germination-derived cristae. Overall, our study elaborates on how cristae morphogenesis and functional maturation are intricately associated. Our data support the vesicle germination and membrane invagination models of cristae formation.


Subject(s)
Electron Transport Complex IV/metabolism , Mitochondria/metabolism , Mitochondrial Membranes/metabolism , Animals , Drosophila Proteins/metabolism , Drosophila melanogaster/metabolism , Electron Transport Chain Complex Proteins/metabolism , Electron Transport Complex IV/physiology , Energy Metabolism/physiology , Membrane Proteins/metabolism , Mitochondrial Proteins/metabolism , Nuclear Proteins/metabolism , Tomography/methods
10.
Aging (Albany NY) ; 11(19): 8433-8462, 2019 09 27.
Article in English | MEDLINE | ID: mdl-31560653

ABSTRACT

Many patients suffering late-onset Alzheimer disease show a deficit in respiratory complex IV activity. The de novo pyrimidine biosynthesis pathway connects with the mitochondrial respiratory chain upstream from respiratory complex IV. We hypothesized that these patients would have decreased pyrimidine nucleotide levels. Then, different cell processes for which these compounds are essential, such as neuronal membrane generation and maintenance and synapses production, would be compromised. Using a cell model, we show that inhibiting oxidative phosphorylation function reduces neuronal differentiation. Linking these processes to pyrimidine nucleotides, uridine treatment recovers neuronal differentiation. To unmask the importance of these pathways in Alzheimer disease, we firstly confirm the existence of the de novo pyrimidine biosynthesis pathway in adult human brain. Then, we report altered mRNA levels for genes from both de novo pyrimidine biosynthesis and pyrimidine salvage pathways in brain from patients with Alzheimer disease. Thus, uridine supplementation might be used as a therapy for those Alzheimer disease patients with low respiratory complex IV activity.


Subject(s)
Alzheimer Disease , Electron Transport Complex IV/physiology , Neurons/physiology , Oxidative Phosphorylation/drug effects , Pyrimidines/biosynthesis , Uridine , Alzheimer Disease/drug therapy , Alzheimer Disease/metabolism , Brain/metabolism , Cell Differentiation/drug effects , Drug Design , Humans , Mitochondria/metabolism , Neuroprotective Agents/pharmacology , Signal Transduction/drug effects , Uridine/metabolism , Uridine/pharmacology
11.
FEBS Lett ; 591(24): 4049-4055, 2017 12.
Article in English | MEDLINE | ID: mdl-29171870

ABSTRACT

Respiratory supercomplex factor (Rcf) 1 is a membrane-bound protein that modulates the activity of cytochrome c oxidase (CytcO) in Saccharomyces cerevisiae mitochondria. To investigate this regulatory mechanism, we studied the interactions of CytcO with potassium cyanide (KCN) upon removal of Rcf1. While the addition of KCN to the wild-type mitochondria results in a full reduction of heme a, with the rcf1Δ mitochondria, a significant fraction remains oxidized. Upon addition of ascorbate in the presence of O2 and KCN, the reduction level of hemes a and b was a factor of ~ 2 larger with the wild-type than with the rcf1Δ mitochondria. These data indicate that turnover of CytcO was less blocked in rcf1Δ than in the wild-type mitochondria, suggesting that Rcf1 modulates the structure of the catalytic site.


Subject(s)
Electron Transport Complex IV/physiology , Mitochondria/metabolism , Oxygen/metabolism , Saccharomyces cerevisiae Proteins/physiology , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae/ultrastructure , Catalytic Domain , Electron Transport/drug effects , Electron Transport/genetics , Electron Transport Complex IV/chemistry , Electron Transport Complex IV/genetics , Electron Transport Complex IV/metabolism , Mitochondria/drug effects , Mitochondria/genetics , Organisms, Genetically Modified , Oxidation-Reduction/drug effects , Potassium Cyanide/pharmacology , Saccharomyces cerevisiae Proteins/genetics
12.
Proc Natl Acad Sci U S A ; 114(48): E10339-E10348, 2017 11 28.
Article in English | MEDLINE | ID: mdl-29133387

ABSTRACT

Proton pumping A-type cytochrome c oxidase (CcO) terminates the respiratory chains of mitochondria and many bacteria. Three possible proton transfer pathways (D, K, and H channels) have been identified based on structural, functional, and mutational data. Whereas the D channel provides the route for all pumped protons in bacterial A-type CcOs, studies of bovine mitochondrial CcO have led to suggestions that its H channel instead provides this route. Here, we have studied H-channel function by performing atomistic molecular dynamics simulations on the entire, as well as core, structure of bovine CcO in a lipid-solvent environment. The majority of residues in the H channel do not undergo large conformational fluctuations. Its upper and middle regions have adequate hydration and H-bonding residues to form potential proton-conducting channels, and Asp51 exhibits conformational fluctuations that have been observed crystallographically. In contrast, throughout the simulations, we do not observe transient water networks that could support proton transfer from the N phase toward heme a via neutral His413, regardless of a labile H bond between Ser382 and the hydroxyethylfarnesyl group of heme a In fact, the region around His413 only became sufficiently hydrated when His413 was fixed in its protonated imidazolium state, but its calculated pKa is too low for this to provide the means to create a proton transfer pathway. Our simulations show that the electric dipole moment of residues around heme a changes with the redox state, hence suggesting that the H channel could play a more general role as a dielectric well.


Subject(s)
Electron Transport Complex IV/physiology , Electron Transport/physiology , Heme/analogs & derivatives , Ion Transport/physiology , Protons , Animals , Biological Transport, Active , Cattle , Electromagnetic Phenomena , Electron Transport Complex IV/chemistry , Heme/chemistry , Heme/physiology , Mitochondria/physiology , Molecular Dynamics Simulation , Water/chemistry , Water/physiology
13.
Trends Endocrinol Metab ; 28(11): 761-770, 2017 11.
Article in English | MEDLINE | ID: mdl-28988874

ABSTRACT

Cytochrome c oxidase (CcO) is the final oxygen accepting enzyme complex (complex IV) of the mitochondrial respiratory chain. In contrast to the other complexes (I, II, and III), CcO is highly regulated via isoforms for six of its ten nuclear-coded subunits, which are differentially expressed in species, tissues, developmental stages, and cellular oxygen concentrations. Recent publications have claimed that NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 4 (NDUFA4), originally identified as subunit of complex I, represents a 14th subunit of CcO. Results on CcO composition in tissues from adult animals and the review of data from recent literature strongly suggest that NDUFA4 is not a 14th subunit of CcO but may represent an assembly factor for CcO or supercomplexes (respirasomes) in mitochondria of growing cells and cancer tissues.


Subject(s)
Electron Transport Complex IV/metabolism , Animals , Electron Transport Complex IV/physiology , Humans , Mammals , Protein Binding , Protein Isoforms , Protein Subunits
14.
Proc Natl Acad Sci U S A ; 114(23): 5924-5929, 2017 06 06.
Article in English | MEDLINE | ID: mdl-28536198

ABSTRACT

Cytochrome c oxidase (CcO) catalyzes the reduction of oxygen to water and uses the released free energy to pump protons against the transmembrane proton gradient. To better understand the proton-pumping mechanism of the wild-type (WT) CcO, much attention has been given to the mutation of amino acid residues along the proton translocating D-channel that impair, and sometimes decouple, proton pumping from the chemical catalysis. Although their influence has been clearly demonstrated experimentally, the underlying molecular mechanisms of these mutants remain unknown. In this work, we report multiscale reactive molecular dynamics simulations that characterize the free-energy profiles of explicit proton transport through several important D-channel mutants. Our results elucidate the mechanisms by which proton pumping is impaired, thus revealing key kinetic gating features in CcO. In the N139T and N139C mutants, proton back leakage through the D-channel is kinetically favored over proton pumping due to the loss of a kinetic gate in the N139 region. In the N139L mutant, the bulky L139 side chain inhibits timely reprotonation of E286 through the D-channel, which impairs both proton pumping and the chemical reaction. In the S200V/S201V double mutant, the proton affinity of E286 is increased, which slows down both proton pumping and the chemical catalysis. This work thus not only provides insight into the decoupling mechanisms of CcO mutants, but also explains how kinetic gating in the D-channel is imperative to achieving high proton-pumping efficiency in the WT CcO.


Subject(s)
Electron Transport Complex IV/chemistry , Electron Transport Complex IV/genetics , Biochemical Phenomena/physiology , Computer Simulation , Electron Transport Complex IV/physiology , Ion Transport/physiology , Kinetics , Models, Molecular , Molecular Dynamics Simulation , Mutation , Oxidation-Reduction , Proton Pumps/genetics , Protons
15.
J Biol Chem ; 292(13): 5216-5226, 2017 03 31.
Article in English | MEDLINE | ID: mdl-28167530

ABSTRACT

The yeast Rcf1 protein is a member of the conserved family of proteins termed the hypoxia-induced gene (domain) 1 (Hig1 or HIGD1) family. Rcf1 interacts with components of the mitochondrial oxidative phosphorylation system, in particular the cytochrome bc1 (complex III)-cytochrome c oxidase (complex IV) supercomplex (termed III-IV) and the ADP/ATP carrier proteins. Rcf1 plays a role in the assembly and modulation of the activity of complex IV; however, the molecular basis for how Rcf1 influences the activity of complex IV is currently unknown. Hig1 type 2 isoforms, which include the Rcf1 protein, are characterized in part by the presence of a conserved motif, (Q/I)X3(R/H)XRX3Q, termed here the QRRQ motif. We show that mutation of conserved residues within the Rcf1 QRRQ motif alters the interactions between Rcf1 and partner proteins and results in the destabilization of complex IV and alteration of its enzymatic properties. Our findings indicate that Rcf1 does not serve as a stoichiometric component, i.e. as a subunit of complex IV, to support its activity. Rather, we propose that Rcf1 serves to dynamically interact with complex IV during its assembly process and, in doing so, regulates a late maturation step of complex IV. We speculate that the Rcf1/Hig1 proteins play a role in the incorporation and/or remodeling of lipids, in particular cardiolipin, into complex IV and. possibly, other mitochondrial proteins such as ADP/ATP carrier proteins.


Subject(s)
Amino Acid Motifs/genetics , DNA Mutational Analysis , Electron Transport Complex IV/physiology , Saccharomyces cerevisiae Proteins/physiology , Saccharomyces cerevisiae/enzymology , Cardiolipins/metabolism , Electron Transport Complex III/metabolism , Electron Transport Complex IV/biosynthesis , Electron Transport Complex IV/genetics , Electron Transport Complex IV/metabolism , Mitochondrial Proteins/metabolism , Mutation , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism
16.
J Neurosci ; 37(2): 422-436, 2017 01 11.
Article in English | MEDLINE | ID: mdl-28077720

ABSTRACT

Decades of anatomical studies on the primate primary visual cortex (V1) have led to a detailed diagram of V1 intrinsic circuitry, but this diagram lacks information about the output targets of V1 cells. Understanding how V1 local processing relates to downstream processing requires identification of neuronal populations defined by their output targets. In primates, V1 layers (L)2/3 and 4B send segregated projections to distinct cytochrome oxidase (CO) stripes in area V2: neurons in CO blob columns project to thin stripes while neurons outside blob columns project to thick and pale stripes, suggesting functional specialization of V1-to-V2 CO streams. However, the conventional diagram of V1 shows all L4B neurons, regardless of their soma location in blob or interblob columns, as projecting selectively to CO blobs in L2/3, suggesting convergence of blob/interblob information in L2/3 blobs and, possibly, some V2 stripes. However, it is unclear whether all L4B projection neurons show similar local circuitries. Using viral-mediated circuit tracing, we have identified the local circuits of L4B neurons projecting to V2 thick stripes in macaque. Consistent with previous studies, we found the somata of this L4B subpopulation to reside predominantly outside blob columns; however, unlike previous descriptions of local L4B circuits, these cells consistently projected outside CO blob columns in all layers. Thus, the local circuits of these L4B output neurons, just like their extrinsic projections to V2, preserve CO streams. Moreover, the intra-V1 laminar patterns of axonal projections identify two distinct neuron classes within this L4B subpopulation, including a rare novel neuron type, suggestive of two functionally specialized output channels. SIGNIFICANCE STATEMENT: Conventional diagrams of primate primary visual cortex (V1) depict neuronal connections within and between different V1 layers, but lack information about the cells' downstream targets. This information is critical to understanding how local processing in V1 relates to downstream processing. We have identified the local circuits of a population of cells in V1 layer (L)4B that project to area V2. These cells' local circuits differ from classical descriptions of L4B circuits in both the laminar and functional compartments targeted by their axons, and identify two neuron classes. Our results demonstrate that both local intra-V1 and extrinsic V1-to-V2 connections of L4B neurons preserve CO-stream segregation, suggesting that across-stream integration occurs downstream of V1, and that output targets dictate local V1 circuitry.


Subject(s)
Electron Transport Complex IV/physiology , Nerve Net/physiology , Presynaptic Terminals/physiology , Visual Cortex/physiology , Visual Pathways/physiology , Animals , Macaca fascicularis , Male , Nerve Net/cytology , Visual Cortex/cytology , Visual Pathways/cytology
17.
PLoS One ; 12(1): e0170307, 2017.
Article in English | MEDLINE | ID: mdl-28122051

ABSTRACT

BACKGROUND: Cytochrome oxidase IV complex regulates energy production in mitochondria. Therefore, we determined the relation of COX genes with atherosclerosis in mice and pigs. METHODS AND RESULTS: First, we compared atherosclerosis in the aortic arch of age-matched (24 weeks) C57BL/6J control (n = 10), LDL-receptor deficient (n = 8), leptin-deficient ob/ob (n = 10), and double knock-out (lacking LDL-receptor and leptin) mice (n = 12). Low aortic mitochondria-encoded cytochrome oxidase 1 in obese diabetic double knock-out mice was associated with a larger plaque area and higher propensity of M1 macrophages and oxidized LDL. Caloric restriction increased mitochondria-encoded cytochrome oxidase 1 and reduced plaque area and oxidized LDL. This was associated with a reduction of titer of anti-oxidized LDL antibodies, a proxy of systemic oxidative stress. Low of mitochondria-encoded cytochrome oxidase 1 was related to low expression of peroxisome proliferative activated receptors α, δ, and γ and of peroxisome proliferative activated receptor, gamma, co-activator 1 alpha reflecting mitochondrial dysfunction. Caloric restriction increased them. To investigate if there was a diabetic/obesity requirement for mitochondria-encoded cytochrome oxidase 1 to be down-regulated, we then studied atherosclerosis in LAD of hypercholesterolemic pigs (n = 37). Pigs at the end of the study were divided in three groups based on increasing LAD plaque complexity according to Stary (Stary I: n = 12; Stary II: n = 13; Stary III: n = 12). Low mitochondria-encoded cytochrome oxidase 1 in isolated plaque macrophages was associated with more complex coronary plaques and oxidized LDL. Nucleus-encoded cytochrome oxidase 4I1 and cytochrome oxidase 10 did not correlate with plaque complexity and oxidative stress. In mice and pigs, MT-COI was inversely related to insulin resistance. CONCLUSIONS: Low MT-COI is related to mitochondrial dysfunction, oxidative stress and atherosclerosis and plaque complexity.


Subject(s)
Atherosclerosis/etiology , Cytochrome-c Oxidase Deficiency/complications , Cytochrome-c Oxidase Deficiency/physiopathology , Electron Transport Complex IV/physiology , Mitochondria/metabolism , Swine, Miniature/metabolism , Animals , Aorta, Thoracic/metabolism , Aorta, Thoracic/pathology , Atherosclerosis/enzymology , Atherosclerosis/genetics , Caloric Restriction , Coronary Vessels/metabolism , Coronary Vessels/pathology , Cytochrome-c Oxidase Deficiency/pathology , Diabetes Mellitus, Experimental/genetics , Diabetes Mellitus, Experimental/metabolism , Electron Transport Complex IV/genetics , Energy Metabolism , Hypercholesterolemia/enzymology , Hypercholesterolemia/pathology , Insulin Resistance , Leptin/deficiency , Leptin/genetics , Lipoproteins, LDL/metabolism , Macrophages/pathology , Mice , Mice, Inbred C57BL , Mice, Knockout , Mice, Obese , Nuclear Receptor Coactivators/biosynthesis , Nuclear Receptor Coactivators/genetics , Oxidative Stress , Peroxisome Proliferator-Activated Receptors/biosynthesis , Peroxisome Proliferator-Activated Receptors/genetics , Plaque, Atherosclerotic/pathology , Receptors, LDL/deficiency , Receptors, LDL/genetics , Receptors, Leptin/deficiency , Receptors, Leptin/genetics , Swine
18.
Aging (Albany NY) ; 8(12): 3468-3485, 2016 12 19.
Article in English | MEDLINE | ID: mdl-27997359

ABSTRACT

The naked mole-rat (NMR) Heterocephalus glaber is an exceptionally long-lived rodent, living up to 32 years in captivity. This extended lifespan is accompanied by a phenotype of negligible senescence, a phenomenon of very slow changes in the expected physiological characteristics with age. One of the many consequences of normal aging in mammals is the devastating and progressive loss of skeletal muscle, termed sarcopenia, caused in part by respiratory enzyme dysfunction within the mitochondria of skeletal muscle fibers. Here we report that NMRs avoid sarcopenia for decades. Muscle fiber integrity and mitochondrial ultrastructure are largely maintained in aged animals. While mitochondrial Complex IV expression and activity remains stable, Complex I expression is significantly decreased. We show that aged naked mole-rat skeletal muscle tissue contains some mitochondrial DNA rearrangements, although the common mitochondrial DNA deletions associated with aging in human and other rodent skeletal muscles are not present. Interestingly, NMR skeletal muscle fibers demonstrate a significant increase in mitochondrial DNA copy number. These results have intriguing implications for the role of mitochondria in aging, suggesting Complex IV, but not Complex I, function is maintained in the long-lived naked mole rat, where sarcopenia is avoided and healthy muscle function is maintained for decades.


Subject(s)
Aging/physiology , Electron Transport Complex IV/physiology , Muscle, Skeletal/physiology , Animals , Electron Transport Complex I/physiology , Male , Mole Rats , Muscular Atrophy
19.
Proc Biol Sci ; 283(1841)2016 Oct 26.
Article in English | MEDLINE | ID: mdl-27798312

ABSTRACT

The metabolic expense of producing and operating neural tissue required for adaptive behaviour is considered a significant selective force in brain evolution. In primates, brain size correlates positively with group size, presumably owing to the greater cognitive demands of complex social relationships in large societies. Social complexity in eusocial insects is also associated with large groups, as well as collective intelligence and division of labour among sterile workers. However, superorganism phenotypes may lower cognitive demands on behaviourally specialized workers resulting in selection for decreased brain size and/or energetic costs of brain metabolism. To test this hypothesis, we compared brain investment patterns and cytochrome oxidase (COX) activity, a proxy for ATP usage, in two ant species contrasting in social organization. Socially complex Oecophylla smaragdina workers had larger brain size and relative investment in the mushroom bodies (MBs)-higher order sensory processing compartments-than the more socially basic Formica subsericea workers. Oecophylla smaragdina workers, however, had reduced COX activity in the MBs. Our results suggest that as in primates, ant group size is associated with large brain size. The elevated costs of investment in metabolically expensive brain tissue in the socially complex O. smaragdina, however, appear to be offset by decreased energetic costs.


Subject(s)
Ants/physiology , Brain/physiology , Social Behavior , Animals , Cognition , Electron Transport Complex IV/physiology , Energy Metabolism , Mushroom Bodies/physiology , Organ Size
20.
Brain ; 139(Pt 2): 338-45, 2016 Feb.
Article in English | MEDLINE | ID: mdl-26685157

ABSTRACT

Isolated cytochrome c oxidase (complex IV) deficiency is one of the most frequent respiratory chain defects in humans and is usually caused by mutations in proteins required for assembly of the complex. Mutations in nuclear-encoded structural subunits are very rare. In a patient with Leigh-like syndrome presenting with leukodystrophy and severe epilepsy, we identified a homozygous splice site mutation in COX8A, which codes for the ubiquitously expressed isoform of subunit VIII, the smallest nuclear-encoded subunit of complex IV. The mutation, affecting the last nucleotide of intron 1, leads to aberrant splicing, a frame-shift in the highly conserved exon 2, and decreased amount of the COX8A transcript. The loss of the wild-type COX8A protein severely impairs the stability of the entire cytochrome c oxidase enzyme complex and manifests in isolated complex IV deficiency in skeletal muscle and fibroblasts, similar to the frequent c.845_846delCT mutation in the assembly factor SURF1 gene. Stability and activity of complex IV could be rescued in the patient's fibroblasts by lentiviral expression of wild-type COX8A. Our findings demonstrate that COX8A is indispensable for function of human complex IV and its mutation causes human disease.


Subject(s)
Electron Transport Complex IV/genetics , Epilepsy/diagnosis , Epilepsy/genetics , Leigh Disease/diagnosis , Leigh Disease/genetics , Protein Subunits/genetics , Child , Electron Transport Complex IV/physiology , Epilepsy/complications , Fatal Outcome , Female , Humans , Leigh Disease/complications , Mutation/genetics
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