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1.
Nat Struct Mol Biol ; 28(3): 258-267, 2021 03.
Article in English | MEDLINE | ID: mdl-33633398

ABSTRACT

G-protein-coupled receptors (GPCRs) are the largest superfamily of transmembrane proteins and the targets of over 30% of currently marketed pharmaceuticals. Although several structures have been solved for GPCR-G protein complexes, few are in a lipid membrane environment. Here, we report cryo-EM structures of complexes of neurotensin, neurotensin receptor 1 and Gαi1ß1γ1 in two conformational states, resolved to resolutions of 4.1 and 4.2 Å. The structures, determined in a lipid bilayer without any stabilizing antibodies or nanobodies, reveal an extended network of protein-protein interactions at the GPCR-G protein interface as compared to structures obtained in detergent micelles. The findings show that the lipid membrane modulates the structure and dynamics of complex formation and provide a molecular explanation for the stronger interaction between GPCRs and G proteins in lipid bilayers. We propose an allosteric mechanism for GDP release, providing new insights into the activation of G proteins for downstream signaling.


Subject(s)
Cryoelectron Microscopy , Heterotrimeric GTP-Binding Proteins/metabolism , Heterotrimeric GTP-Binding Proteins/ultrastructure , Lipid Bilayers , Nanostructures/chemistry , Receptors, Neurotensin/metabolism , Receptors, Neurotensin/ultrastructure , Allosteric Regulation , GTP-Binding Protein alpha Subunits, Gi-Go/chemistry , GTP-Binding Protein alpha Subunits, Gi-Go/metabolism , GTP-Binding Protein alpha Subunits, Gi-Go/ultrastructure , GTP-Binding Protein beta Subunits/chemistry , GTP-Binding Protein beta Subunits/metabolism , GTP-Binding Protein beta Subunits/ultrastructure , GTP-Binding Protein gamma Subunits/chemistry , GTP-Binding Protein gamma Subunits/metabolism , GTP-Binding Protein gamma Subunits/ultrastructure , Guanosine Diphosphate/metabolism , Heterotrimeric GTP-Binding Proteins/chemistry , Humans , Lipid Bilayers/chemistry , Lipid Bilayers/metabolism , Micelles , Models, Molecular , Neurotensin/chemistry , Neurotensin/metabolism , Protein Conformation , Receptors, Neurotensin/chemistry , Signal Transduction
2.
FEBS J ; 288(8): 2490-2501, 2021 04.
Article in English | MEDLINE | ID: mdl-33085809

ABSTRACT

G protein-coupled receptors (GPCRs) represent a major group of drug targets with tremendous pharmacological value. Signals arising from GPCRs are primarily transduced via two functional components of their corresponding G proteins, the Gα subunit and the Gßγ dimer that dissociate from each other upon activation of the heterotrimer (Gαßγ). The Gßγ dimer has become an increasingly popular subject in GPCR signaling, owing to its numerous effectors and notable roles in signal integration. Because Gßγ dimers participate in a wide range of intracellular processes that regulate cellular physiology, they are often implicated in the pathology of various diseases. Yet, one caveat to the current 'Dissociation Model' on GPCR signaling is that unequivocal Gßγ signals are biasedly detected with Gi/o -coupled receptors, while Gßγ signals from Gs - or Gq -coupled receptors seem to play an auxiliary role. In this review, we revisit the evidence for or against the 'Dissociation Model' and discuss in detail several hypotheses that may explain such disparity and provide alternative interpretations to accommodate the 'biased Gßγ signals' observed in different biological systems. The issue of whether unique combinations of Gßγ dimer can confer signaling specificity is also discussed in the context of physiological relevance.


Subject(s)
GTP-Binding Protein beta Subunits/genetics , GTP-Binding Protein gamma Subunits/genetics , GTP-Binding Proteins/genetics , Receptors, G-Protein-Coupled/genetics , GTP-Binding Protein beta Subunits/ultrastructure , GTP-Binding Protein gamma Subunits/ultrastructure , GTP-Binding Proteins/ultrastructure , Humans , Protein Multimerization/genetics , Protein Processing, Post-Translational/genetics , Receptors, G-Protein-Coupled/ultrastructure , Signal Transduction/genetics
3.
Elife ; 82019 06 28.
Article in English | MEDLINE | ID: mdl-31251171

ABSTRACT

One of the largest membrane protein families in eukaryotes are G protein-coupled receptors (GPCRs). GPCRs modulate cell physiology by activating diverse intracellular transducers, prominently heterotrimeric G proteins. The recent surge in structural data has expanded our understanding of GPCR-mediated signal transduction. However, many aspects, including the existence of transient interactions, remain elusive. We present the cryo-EM structure of the light-sensitive GPCR rhodopsin in complex with heterotrimeric Gi. Our density map reveals the receptor C-terminal tail bound to the Gß subunit of the G protein, providing a structural foundation for the role of the C-terminal tail in GPCR signaling, and of Gß as scaffold for recruiting Gα subunits and G protein-receptor kinases. By comparing available complexes, we found a small set of common anchoring points that are G protein-subtype specific. Taken together, our structure and analysis provide new structural basis for the molecular events of the GPCR signaling pathway.


Subject(s)
GTP-Binding Protein alpha Subunits/ultrastructure , GTP-Binding Protein beta Subunits/ultrastructure , GTP-Binding Protein gamma Subunits/ultrastructure , Rhodopsin/ultrastructure , Animals , Cattle , Cryoelectron Microscopy , GTP-Binding Protein beta Subunits/metabolism , Multiprotein Complexes/ultrastructure , Protein Binding , Rhodopsin/metabolism
4.
Nat Commun ; 10(1): 2008, 2019 05 01.
Article in English | MEDLINE | ID: mdl-31043612

ABSTRACT

G protein-gated inwardly rectifying potassium channel (GIRK) plays a key role in regulating neurotransmission. GIRK is opened by the direct binding of the G protein ßγ subunit (Gßγ), which is released from the heterotrimeric G protein (Gαßγ) upon the activation of G protein-coupled receptors (GPCRs). GIRK contributes to precise cellular responses by specifically and efficiently responding to the Gi/o-coupled GPCRs. However, the detailed mechanisms underlying this family-specific and efficient activation are largely unknown. Here, we investigate the structural mechanism underlying the Gi/o family-specific activation of GIRK, by combining cell-based BRET experiments and NMR analyses in a reconstituted membrane environment. We show that the interaction formed by the αA helix of Gαi/o mediates the formation of the Gαi/oßγ-GIRK complex, which is responsible for the family-specific activation of GIRK. We also present a model structure of the Gαi/oßγ-GIRK complex, which provides the molecular basis underlying the specific and efficient regulation of GIRK.


Subject(s)
G Protein-Coupled Inwardly-Rectifying Potassium Channels/ultrastructure , GTP-Binding Protein alpha Subunits, Gi-Go/ultrastructure , GTP-Binding Protein beta Subunits/ultrastructure , GTP-Binding Protein gamma Subunits/ultrastructure , Ion Channel Gating/physiology , Bioluminescence Resonance Energy Transfer Techniques , G Protein-Coupled Inwardly-Rectifying Potassium Channels/metabolism , GTP-Binding Protein alpha Subunits, Gi-Go/isolation & purification , GTP-Binding Protein alpha Subunits, Gi-Go/metabolism , GTP-Binding Protein beta Subunits/isolation & purification , GTP-Binding Protein beta Subunits/metabolism , GTP-Binding Protein gamma Subunits/isolation & purification , GTP-Binding Protein gamma Subunits/metabolism , HEK293 Cells , Humans , Models, Molecular , Nuclear Magnetic Resonance, Biomolecular , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Recombinant Proteins/ultrastructure
5.
Nature ; 567(7746): 127-131, 2019 03.
Article in English | MEDLINE | ID: mdl-30814734

ABSTRACT

The GABAB (γ-aminobutyric acid type B) receptor is one of the principal inhibitory neurotransmitter receptors in the brain, and it signals through heterotrimeric G proteins to activate a variety of effectors, including G-protein-coupled inwardly rectifying potassium channels (GIRKs)1,2. GABAB-receptor signalling is tightly regulated by auxiliary subunits called KCTDs, which control the kinetics of GIRK activation and desensitization3-5. However, the mechanistic basis for KCTD modulation of GABAB signalling remains incompletely understood. Here, using a combination of X-ray crystallography, electron microscopy, and functional and biochemical experiments, we reveal the molecular details of KCTD binding to both GABAB receptors and G-protein ßγ subunits. KCTDs associate with the receptor by forming an asymmetric pentameric ring around a region of the receptor carboxy-terminal tail, while a second KCTD domain, H1, engages in a symmetric interaction with five copies of Gßγ in which the G-protein subunits also interact directly with one another. We further show that KCTD binding to Gßγ is highly cooperative, defining a model in which KCTD proteins cooperatively strip G proteins from GIRK channels to induce rapid desensitization following receptor activation. These results provide a framework for understanding the molecular basis for the precise temporal control of GABAB signalling by KCTD proteins.


Subject(s)
Intracellular Signaling Peptides and Proteins/chemistry , Nerve Tissue Proteins/chemistry , Proteins/chemistry , Receptors, GABA-B/chemistry , Receptors, GABA-B/metabolism , Signal Transduction , Crystallography, X-Ray , G Protein-Coupled Inwardly-Rectifying Potassium Channels/chemistry , G Protein-Coupled Inwardly-Rectifying Potassium Channels/metabolism , GTP-Binding Protein beta Subunits/chemistry , GTP-Binding Protein beta Subunits/metabolism , GTP-Binding Protein beta Subunits/ultrastructure , GTP-Binding Protein gamma Subunits/chemistry , GTP-Binding Protein gamma Subunits/metabolism , GTP-Binding Protein gamma Subunits/ultrastructure , Humans , Microscopy, Electron , Models, Biological , Models, Molecular , Nerve Tissue Proteins/ultrastructure , Protein Binding , Protein Domains , Proteins/metabolism , Proteins/ultrastructure , Receptors, GABA-B/ultrastructure
6.
Dev Cell ; 47(2): 248-256.e4, 2018 10 22.
Article in English | MEDLINE | ID: mdl-30293840

ABSTRACT

The biogenesis of lipid droplets (LDs) and the development of adipocytes are two key aspects of mammalian fat storage. SEIPIN, an integral membrane protein of the endoplasmic reticulum (ER), plays a critical role in both LD formation and adipogenesis. The molecular function of SEIPIN, however, has yet to be elucidated. Here, we report the cryogenic electron microscopy structure of human SEIPIN at 3.8 Å resolution. SEIPIN exists as an undecamer, and this oligomerization state is critical for its physiological function. The evolutionarily conserved lumenal domain of SEIPIN forms an eight-stranded ß sandwich fold. Both full-length SEIPIN and its lumenal domain can bind anionic phospholipids including phosphatidic acid. Our results suggest that SEIPIN forms a scaffold that helps maintain phospholipid homeostasis and surface tension of the ER.


Subject(s)
GTP-Binding Protein gamma Subunits/chemistry , GTP-Binding Protein gamma Subunits/physiology , Lipid Droplets/metabolism , Adipocytes/metabolism , Adipogenesis/physiology , Adipose Tissue/metabolism , Cryoelectron Microscopy/methods , Endoplasmic Reticulum/metabolism , GTP-Binding Protein gamma Subunits/metabolism , GTP-Binding Protein gamma Subunits/ultrastructure , HEK293 Cells , HeLa Cells , Humans , Lipid Metabolism/physiology , Membrane Proteins/metabolism , Phospholipids
7.
Proc Natl Acad Sci U S A ; 112(8): 2413-8, 2015 Feb 24.
Article in English | MEDLINE | ID: mdl-25675501

ABSTRACT

G-protein signaling depends on the ability of the individual subunits of the G-protein heterotrimer to assemble into a functional complex. Formation of the G-protein ßγ (Gßγ) dimer is particularly challenging because it is an obligate dimer in which the individual subunits are unstable on their own. Recent studies have revealed an intricate chaperone system that brings Gß and Gγ together. This system includes cytosolic chaperonin containing TCP-1 (CCT; also called TRiC) and its cochaperone phosducin-like protein 1 (PhLP1). Two key intermediates in the Gßγ assembly process, the Gß-CCT and the PhLP1-Gß-CCT complexes, were isolated and analyzed by a hybrid structural approach using cryo-electron microscopy, chemical cross-linking coupled with mass spectrometry, and unnatural amino acid cross-linking. The structures show that Gß interacts with CCT in a near-native state through interactions of the Gγ-binding region of Gß with the CCTγ subunit. PhLP1 binding stabilizes the Gß fold, disrupting interactions with CCT and releasing a PhLP1-Gß dimer for assembly with Gγ. This view provides unique insight into the interplay between CCT and a cochaperone to orchestrate the folding of a protein substrate.


Subject(s)
Carrier Proteins/chemistry , Chaperonin Containing TCP-1/chemistry , GTP-Binding Protein beta Subunits/chemistry , GTP-Binding Protein gamma Subunits/chemistry , Nerve Tissue Proteins/chemistry , Protein Multimerization , Amino Acids/metabolism , Animals , Benzophenones , Carrier Proteins/ultrastructure , Chaperonin Containing TCP-1/ultrastructure , Cross-Linking Reagents/metabolism , Cryoelectron Microscopy , GTP-Binding Protein beta Subunits/ultrastructure , GTP-Binding Protein gamma Subunits/ultrastructure , Humans , Mass Spectrometry , Models, Molecular , Nerve Tissue Proteins/ultrastructure , Phenylalanine/analogs & derivatives , Protein Structure, Secondary
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