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1.
J Genet Genomics ; 47(4): 213-223, 2020 04 20.
Article in English | MEDLINE | ID: mdl-32507415

ABSTRACT

CTP synthase (CTPS) is an important metabolic enzyme that catalyzes the rate-limiting reaction of nucleotide CTP de novo synthesis. Since 2010, a series of studies have demonstrated that CTPS can form filamentous structures in bacteria and eukaryotes, which are termed cytoophidia. However, it is unknown whether cytoophidia exist in the third domain of life, archaea. Using Haloarcula hispanica as a model system, here we demonstrate that CTPS forms distinct intracellular compartments in archaea. Under stimulated emission depletion microscopy, we find that the structures of H. hispanica CTPS are elongated, similar to cytoophidia in bacteria and eukaryotes. When Haloarcula cells are cultured in low-salt medium, the occurrence of cytoophidia increases dramatically. In addition, treatment of H. hispanica with a glutamine analog or overexpression of CTPS can promote cytoophidium assembly. Our study reveals that CTPS can form cytoophidia in all three domains of life, suggesting that forming cytoophidia is an ancient property of CTPS.


Subject(s)
Carbon-Nitrogen Ligases/genetics , Cytoskeleton/enzymology , Haloarcula/enzymology , Archaea/enzymology , Archaea/metabolism , Carbon-Nitrogen Ligases/metabolism , Cytoskeleton/genetics , Cytoskeleton/metabolism , Gene Expression Regulation, Archaeal/drug effects , Glutamine/metabolism , Glutamine/pharmacology , Haloarcula/genetics
2.
Int J Biol Macromol ; 151: 1173-1180, 2020 May 15.
Article in English | MEDLINE | ID: mdl-31751744

ABSTRACT

Halophilic cellulases are indispensable enzymes of heavy industrial processes as resistant biocatalysts due to high level activity at extreme conditions. In this study, crude cellulase from an extreme halophilic Haloarcula sp. CKT3 was characterized. Then, recombinant expression of putative endo-1,4-ß-glucanase gene, of CKT3 strain, in E. coli BL21(DE3) was performed with the aim of obtaining highly pure, active and robust industrial enzyme for such industrial aplications. The crude cellulase had optimal activity (16.9 U/mg) at 70 °C, pH 7.0 and 4 M NaCl exhibiting good thermostability, high pH and halotolerance. Indeed, it is very stable in water-insoluble organic solvents with log Po/w ≥ 2.13 and highly resistant to SDS (10%). Recombinant CKT3eng has a molecular weight of 36.9 kDa and 99% aminoacid identity to endo-l,4-ß-D-glucanase from Haloarcula argentinensis. Its 3D structure was predicted using Phyre2 and I-TASSER. rCKT3eng enzyme provided 31.6 U/mg activity at optimal 50 °C, pH 7.0 and 3 M NaCl. In addition to its quite similar stability values and resistance to organic solvents and SDS, rCKT3eng has superiority over crude enzyme with 1.87-fold higher specific activity. Therefore, rCKT3eng offers a promising enzyme for industrial use with its valuable activity and stability in extreme conditions.


Subject(s)
Exoribonucleases/chemistry , Haloarcula/enzymology , Recombinant Proteins/chemistry , Enzyme Stability , Exoribonucleases/isolation & purification , Hydrogen-Ion Concentration , Models, Molecular , Phylogeny , Protein Conformation , Recombinant Proteins/isolation & purification , Sodium Chloride/chemistry , Solvents , Substrate Specificity , Temperature
3.
J Bacteriol ; 199(21)2017 11 01.
Article in English | MEDLINE | ID: mdl-28784816

ABSTRACT

Halophilic archaea often inhabit environments with limited oxygen, and many produce ion-pumping rhodopsin complexes that allow them to maintain electrochemical gradients when aerobic respiration is inhibited. Rhodopsins require a protein, an opsin, and an organic cofactor, retinal. We previously demonstrated that in Halobacterium salinarum, bacterioopsin (BO), when not bound by retinal, inhibits the production of bacterioruberin, a biochemical pathway that shares intermediates with retinal biosynthesis. In this work, we used heterologous expression in a related halophilic archaeon, Haloferax volcanii, to demonstrate that BO is sufficient to inhibit bacterioruberin synthesis catalyzed by the H. salinarum lycopene elongase (Lye) enzyme. This inhibition was observed both in liquid culture and in a novel colorimetric assay to quantify bacterioruberin abundance based on the colony color. Addition of retinal to convert BO to the bacteriorhodopsin complex resulted in a partial rescue of bacterioruberin production. To explore if this regulatory mechanism occurs in other organisms, we expressed a Lye homolog and an opsin from Haloarcula vallismortis in H. volcaniiH. vallismortis cruxopsin-3 expression inhibited bacterioruberin synthesis catalyzed by H. vallismortis Lye but had no effect when bacterioruberin synthesis was catalyzed by H. salinarum or H. volcanii Lye. Conversely, H. salinarum BO did not inhibit H. vallismortis Lye activity. Together, our data suggest that opsin-mediated inhibition of Lye is potentially widespread and represents an elegant regulatory mechanism that allows organisms to efficiently utilize ion-pumping rhodopsins obtained through lateral gene transfer.IMPORTANCE Many enzymes are complexes of proteins and nonprotein organic molecules called cofactors. To ensure efficient formation of functional complexes, organisms must regulate the production of proteins and cofactors. To study this regulation, we used bacteriorhodopsin from the archaeon Halobacterium salinarum Bacteriorhodopsin consists of the bacterioopsin protein and a retinal cofactor. In this article, we further characterize a novel regulatory mechanism in which bacterioopsin promotes retinal production by inhibiting a reaction that consumes lycopene, a retinal precursor. By expressing H. salinarum genes in a different organism, Haloferax volcanii, we demonstrated that bacterioopsin alone is sufficient for this inhibition. We also found that an opsin from Haloarcula vallismortis has inhibitory activity, suggesting that this regulatory mechanism might be found in other organisms.


Subject(s)
Archaea/metabolism , Bacteriorhodopsins/metabolism , Carotenoids/biosynthesis , Haloferax volcanii/metabolism , Bacteriorhodopsins/genetics , Cloning, Molecular , Colorimetry , Gene Expression , Haloarcula/enzymology , Haloarcula/genetics , Haloferax volcanii/genetics , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Retinaldehyde/metabolism
4.
Extremophiles ; 21(3): 591-602, 2017 May.
Article in English | MEDLINE | ID: mdl-28349498

ABSTRACT

Dihydrofolate (DHF) reductase coded by a plasmid of the extremely halophilic archaeon Haloarcula japonica strain TR-1 (HjDHFR P1) shows moderate halophilicity on enzymatic activity at pH 6.0, although there is no significant effect of NaCl on its secondary structure. To elucidate the salt-activation and -inactivation mechanisms of this enzyme, we investigated the effects of pH and salt concentration, deuterium isotope effect, steady-state kinetics, and rapid-phase ligand-binding kinetics. Enzyme activity was increased eightfold by the addition of 500 mM NaCl at pH 6.0, fourfold by 250 mM at pH 8.0, and became independent of salt concentration at pH 10.0. Full isotope effects observed at pH 10.0 under 0-1000 mM NaCl indicated that the rate of hydride transfer, which was the rate-determining step at the basic pH region, was independent of salt concentration. Conversely, rapid-phase ligand-binding experiments showed that the amplitude of the DHF-binding reaction increased and the tetrahydrofolate (THF)-releasing rate decreased with increasing NaCl concentration. These results suggested that the salt-activation mechanism of HjDHFR P1 is via the population change of the anion-unbound and anion-bound conformers, which are binding-incompetent and -competent conformations for DHF, respectively, while that of salt inactivation is via deceleration of the THF-releasing rate, which is the rate-determining step at the neutral pH region.


Subject(s)
Archaeal Proteins/metabolism , Haloarcula/enzymology , Tetrahydrofolate Dehydrogenase/metabolism , Archaeal Proteins/chemistry , Kinetics , Protein Binding , Salinity , Tetrahydrofolate Dehydrogenase/chemistry
5.
Extremophiles ; 21(3): 471-477, 2017 May.
Article in English | MEDLINE | ID: mdl-28213825

ABSTRACT

The soluble protein fraction of the extremely halophilic archaeon Haloarcula japonica exhibits substantial inorganic pyrophosphate (PPi) hydrolysis activity in the presence of 2-4 M NaCl (Wakai et al, J Biol Chem 288:29247-29251, 2013), which provides high ionic strength (2-4). In this study, much higher PPi hydrolysis activity was unexpectedly detected, even with 0 M NaCl in the presence of 100-200 mM MgSO4, providing a much lower ionic strength of 0.4-0.8, in the same protein fraction. Na+ and Mg2+ ions were required for activity under high and low ionic strength conditions, respectively. A recombinant H. japonica pyrophosphatase (HjPPase) exhibited PPi hydrolysis activity with the same broad ionic strength range, indicating that the activity associated with such a broad ionic strength range could be attributed to a single enzyme. Thus, we concluded that the broad ionic strength range of HjPPase may contribute to adaptation for both Na+ and Mg2+ which are abundant but variable in the unstable living environments of H. japonica.


Subject(s)
Archaeal Proteins/metabolism , Diphosphates/metabolism , Haloarcula/enzymology , Pyrophosphatases/metabolism , Archaeal Proteins/chemistry , Extreme Environments , Haloarcula/metabolism , Osmolar Concentration , Pyrophosphatases/chemistry , Salinity
6.
J Bacteriol ; 199(4)2017 02 15.
Article in English | MEDLINE | ID: mdl-27920298

ABSTRACT

Haloarchaea are extremely halophilic heterotrophic microorganisms belonging to the class Halobacteria (Euryarchaeota). Almost half of the haloarchaea possesses the genes coding for enzymes of the methylaspartate cycle, a recently discovered anaplerotic acetate assimilation pathway. In this cycle, the enzymes of the tricarboxylic acid cycle together with the dedicated enzymes of the methylaspartate cycle convert two acetyl coenzyme A (acetyl-CoA) molecules to malate. The methylaspartate cycle involves two reactions catalyzed by homologous enzymes belonging to the CitE-like enzyme superfamily, malyl-CoA lyase/thioesterase (haloarchaeal malate synthase [hMS]; Hah_2476 in Haloarcula hispanica) and ß-methylmalyl-CoA lyase (haloarchaeal ß-methylmalyl-CoA lyase [hMCL]; Hah_1341). Although both enzymes catalyze the same reactions, hMS was previously proposed to preferentially catalyze the formation of malate from acetyl-CoA and glyoxylate (malate synthase activity) and hMCL was proposed to primarily cleave ß-methylmalyl-CoA to propionyl-CoA and glyoxylate. Here we studied the physiological functions of these enzymes during acetate assimilation in H. hispanica by using biochemical assays of the wild type and deletion mutants. Our results reveal that the main physiological function of hMS is malyl-CoA (not malate) formation and that hMCL catalyzes a ß-methylmalyl-CoA lyase reaction in vivo The malyl-CoA thioesterase activities of both enzymes appear to be not essential for growth on acetate. Interestingly, despite the different physiological functions of hMS and hMCL, structural comparisons predict that these two proteins have virtually identical active sites, thus highlighting the need for experimental validation of their catalytic functions. Our results provide further proof of the operation of the methylaspartate cycle and indicate the existence of a distinct, yet-to-be-discovered malyl-CoA thioesterase in haloarchaea. IMPORTANCE: Acetate is one of the most important substances in natural environments. The activated form of acetate, acetyl coenzyme A (acetyl-CoA), is the high-energy intermediate at the crossroads of central metabolism: its oxidation generates energy for the cell, and about a third of all biosynthetic fluxes start directly from acetyl-CoA. Many organic compounds enter the central carbon metabolism via this key molecule. To sustain growth on acetyl-CoA-generating compounds, a dedicated assimilation (anaplerotic) pathway is required. The presence of an anaplerotic pathway is a prerequisite for growth in many environments, being important for environmentally, industrially, and clinically important microorganisms. Here we studied specific reactions of a recently discovered acetate assimilation pathway, the methylaspartate cycle, functioning in extremely halophilic archaea.


Subject(s)
Aspartic Acid/analogs & derivatives , Gene Expression Regulation, Archaeal/physiology , Gene Expression Regulation, Enzymologic/physiology , Haloarcula/enzymology , Malate Synthase/metabolism , Oxo-Acid-Lyases/metabolism , Aspartic Acid/metabolism , Cell Extracts , Haloarcula/genetics , Haloarcula/metabolism , Malate Synthase/genetics , Mutation , Oxo-Acid-Lyases/genetics , Phylogeny
7.
Protein Expr Purif ; 126: 62-68, 2016 10.
Article in English | MEDLINE | ID: mdl-27215670

ABSTRACT

2-Deoxy-d-ribose-5-phosphate aldolase (DERA) catalyzes the aldol reaction between two aldehydes and is thought to be a potential biocatalyst for the production of a variety of stereo-specific materials. A gene encoding DERA from the extreme halophilic archaeon, Haloarcula japonica, was overexpressed in Escherichia coli. The gene product was successfully purified, using procedures based on the protein's halophilicity, and characterized. The expressed enzyme was stable in a buffer containing 2 M NaCl and exhibited high thermostability, retaining more than 90% of its activity after heating at 70 °C for 10 min. The enzyme was also tolerant to high concentrations of organic solvents, such as acetonitrile and dimethylsulfoxide. Moreover, H. japonica DERA was highly resistant to a high concentration of acetaldehyde and retained about 35% of its initial activity after 5-h' exposure to 300 mM acetaldehyde at 25 °C, the conditions under which E. coli DERA is completely inactivated. The enzyme exhibited much higher activity at 25 °C than the previously characterized hyperthermophilic DERAs (Sakuraba et al., 2007). Our results suggest that the extremely halophilic DERA has high potential to serve as a biocatalyst in organic syntheses. This is the first description of the biochemical characterization of a halophilic DERA.


Subject(s)
Aldehyde-Lyases , Archaeal Proteins , Haloarcula , Sodium Chloride/chemistry , Aldehyde-Lyases/biosynthesis , Aldehyde-Lyases/chemistry , Aldehyde-Lyases/genetics , Aldehyde-Lyases/isolation & purification , Archaeal Proteins/biosynthesis , Archaeal Proteins/chemistry , Archaeal Proteins/genetics , Archaeal Proteins/isolation & purification , Enzyme Stability , Escherichia coli/genetics , Escherichia coli/metabolism , Haloarcula/enzymology , Haloarcula/genetics , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification
8.
Extremophiles ; 19(6): 1133-43, 2015 Nov.
Article in English | MEDLINE | ID: mdl-26369649

ABSTRACT

The biodiversity and biotechnological potential of microbes from central Argentinean halophilic environments have been poorly explored. Salitral Negro and Colorada Grande salterns are neutral hypersaline basins exploded for NaCl extraction. As part of an ecological analysis of these environments, two bacterial and seven archaeal representatives were isolated, identified and examined for their biotechnological potential. The presence of hydrolases (proteases, amylases, lipases, cellulases and nucleases) and bioactive molecules (surfactants and antimicrobial compounds) was screened. While all the isolates exhibited at least one of the tested activities or biocompounds, the species belonging to Haloarcula genus were the most active, also producing antimicrobial compounds against their counterparts. In general, the biosurfactants were more effective against olive oil and aromatic compounds than detergents (SDS or Triton X-100). Our results demonstrate the broad spectrum of activities with biotechnological potential exhibited by the microorganisms inhabiting the Argentinean salterns and reinforce the importance of screening pristine extreme environments to discover interesting/novel bioactive molecules.


Subject(s)
Haloarcula/metabolism , Industrial Microbiology/methods , Surface-Active Agents/metabolism , Anti-Infective Agents/metabolism , Archaeal Proteins/metabolism , Haloarcula/enzymology , Haloarcula/genetics , Haloarcula/isolation & purification , Hydrolases/metabolism , Salt Tolerance
9.
Extremophiles ; 19(2): 479-93, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25617115

ABSTRACT

The effects of salt on the structure, stability, and enzymatic function of a novel dihydrofolate reductase (HjDHFR P1) from a hyperhalophilic archaeon, Haloarcula japonica strain TR-1 living in a Japanese saltern, were studied using ultraviolet absorption, circular dichroism (CD), and fluorescence spectroscopy. HjDHFR P1 had a partial structure at pH 8.0 in the absence of NaCl, and the addition of NaCl (0-500 mM concentration) induced significant structural formation to HjDHFR P1. The addition of NADPH, which is a coenzyme for its catalytic reaction, and lowering the pH from 8 to 6 also induced the same CD change, indicating the formation of the NADPH-binding site in HjDHFR P1. The NaCl dependence of thermal and urea-induced unfolding measurements suggested that protein stability increased depending on NaCl concentration regardless of structural formation, and HjDHFR P1 achieved the same stability as Escherichia coli DHFR at 750 mM NaCl. Halophilic characteristics were also observed for enzymatic function, although its structure had already formed under the conditions that enzymatic activity was measured at due to the presence of NADPH. These results suggest that the halophilic mechanism on structural stability and function was caused by factors other than structural formation, which are suggested to be the contributions of preferential interactions between the protein and salt ions and the specific binding of salt ions.


Subject(s)
Archaeal Proteins/chemistry , Haloarcula/enzymology , Protein Denaturation , Tetrahydrofolate Dehydrogenase/chemistry , Amino Acid Sequence , Archaeal Proteins/metabolism , Enzyme Stability , Molecular Sequence Data , NADP/metabolism , Sodium Chloride/chemistry , Tetrahydrofolate Dehydrogenase/metabolism , Urea/chemistry
10.
Folia Microbiol (Praha) ; 59(6): 455-63, 2014 Nov.
Article in English | MEDLINE | ID: mdl-24789461

ABSTRACT

A haloarchaeal strain G41 showing lipolytic activity was isolated from the saline soil of Yuncheng Salt Lake, China. Biochemical and physiological characterizations along with 16S rRNA gene sequence analysis placed the isolate in the genus Haloarcula. Lipase production was strongly influenced by the salinity of growth medium with maximum in the presence of 20% NaCl or 15% Na2SO4. The lipase was purified to homogeneity with a molecular mass of 45 kDa. Substrate specificity test revealed that it preferred long-chain p-nitrophenyl esters. The lipase was highly active and stable over broad ranges of temperature (30-80 °C), pH (6.0-11.0), and NaCl concentration (10-25%), with an optimum at 70 °C, pH 8.0, and 15% NaCl, showing thermostable, alkali-stable, and halostable properties. Enzyme inhibition studies indicated that the lipase was a metalloenzyme, with serine and cysteine residues essential for enzyme function. Moreover, it displayed high stability and activation in the presence of hydrophobic organic solvents with log Pow ≥ 2.73. The free and immobilized lipases from strain G41 were applied for biodiesel production, and 80.5 and 89.2% of yields were achieved, respectively. This study demonstrated the feasibility of using lipases from halophilic archaea for biodiesel production.


Subject(s)
Archaeal Proteins/chemistry , Archaeal Proteins/metabolism , Biofuels/analysis , Haloarcula/enzymology , Lipase/chemistry , Lipase/metabolism , Archaeal Proteins/genetics , China , Enzyme Stability , Haloarcula/classification , Haloarcula/genetics , Haloarcula/isolation & purification , Hydrogen-Ion Concentration , Kinetics , Lipase/genetics , Molecular Sequence Data , Molecular Weight , Phylogeny , Soil Microbiology , Substrate Specificity , Temperature
11.
J Comput Aided Mol Des ; 28(7): 721-34, 2014 Jul.
Article in English | MEDLINE | ID: mdl-24865847

ABSTRACT

Proteins from halophilic archaea, which live in extreme saline conditions, have evolved to remain folded, active and stable at very high ionic strengths. Understanding the mechanism of haloadaptation is the first step toward engineering of halostable biomolecules. Amylases are one of the main enzymes used in industry. Yet, no three-dimensional structure has been experimentally resolved for α-amylases from halophilic archaea. In this study, homology structure modeling of α-amylases from the halophilic archaea Haloarcula marismortui, Haloarcula hispanica, and Halalkalicoccus jeotgali were performed. The resulting models were subjected to energy minimization, evaluation, and structural analysis. Calculations of the amino acid composition, salt bridges and hydrophobic interactions were also performed and compared to a set of non-halophilic counterparts. It clearly appeared that haloarchaeal α-amylases exhibited lower propensities for helix formation and higher propensities for coil-forming regions. Furthermore, they could maintain a folded and stable conformation in high salt concentration through highly negative charged surface with over representation of acidic residues, especially Asp, and low hydrophobicity with increase of salt bridges and decrease in hydrophobic interactions on the protein surface. This study sheds some light on the stability of α-amylases from halophilic archaea and provides strong basis not only to understand haloadaptation mechanisms of proteins in microorganisms from hypersalines environments but also for biotechnological applications.


Subject(s)
Protein Conformation , Protein Folding , Structural Homology, Protein , alpha-Amylases/chemistry , Amino Acid Sequence , Archaea , Haloarcula/chemistry , Haloarcula/enzymology , Halobacteriales/chemistry , Hydrophobic and Hydrophilic Interactions , Models, Molecular , Protein Structure, Secondary
12.
Enzyme Microb Technol ; 55: 58-64, 2014 Feb 05.
Article in English | MEDLINE | ID: mdl-24411446

ABSTRACT

As a multifunctional group of enzymes, glutathione S-transferases (GSTs) are capable of inactivation, degradation or excretion of wide range of compounds catalytically or non-catalytically. However, to date, no study has been addresses the presence of GSTs in archaea based on their enzymatic functions. In this study, beside glutathione (GSH) amount measurement, the determination of GST activity in halophilic archaeon called Haloarcula hispanica ATCC 33960 were aimed. According to the results, specific activity was determined as 19.68 nmol min⁻¹ mg⁻¹ protein and GSH content were found to be as 194 µg g⁻¹ K(m) and V(max) values for CDNB and GSH calculated from Lineweaver-Burk plot were 0.46 mM and 27.93 nmol min⁻¹ mg⁻¹, 0.13 mM and 22.03 nmol min⁻¹ mg⁻¹, respectively. Hanes-Woolf and Eadie-Hofstee plots for CDNB and GSH were also found to be in co-relation with the results obtained from Lineweaver-Burk plot. To the best of our knowledge, GST enzymes have not been identified in archaea yet, at least based on their catalytic activities. Therefore, it is the first report on this area.


Subject(s)
Archaeal Proteins/metabolism , Glutathione Peroxidase/metabolism , Haloarcula/enzymology , Cytosol/enzymology , Diazonium Compounds/metabolism , Glutathione/metabolism , Haloarcula/ultrastructure , Hydrogen-Ion Concentration , Kinetics , Osmolar Concentration , Oxidation-Reduction , Salinity , Temperature
13.
Int J Biol Macromol ; 62: 101-6, 2013 Nov.
Article in English | MEDLINE | ID: mdl-23999019

ABSTRACT

A haloarchaeal strain G10 with celluolytic activity was isolated from the saline soil of Yuncheng Salt Lake, China. Biochemical and physiological characterization along with 16S rRNA gene sequence analysis placed the isolate in the genus Haloarcula. The extracellular cellulase was purified to homogeneity with a molecular mass of 36 kDa. Substrate specificity test indicated that it was an endoglucanase for soluble cellulose. Optimal enzyme activity was found to be at 60 °C, pH 9.0 and 17.5% NaCl. Furthermore, high activity and stability over broad ranges of temperature (40-80 °C), pH (7.0-10.0) and NaCl concentration (12.5-27.5%) were observed, showing thermostable, alkali-stable and halostable properties of the cellulase. Significant inhibition by EDTA, phenylmethylsulfonyl fluoride (PMSF) and diethyl pyrocarbonate (DEPC) revealed it was a metalloenzyme with serine and histidine residues essential for enzyme catalysis. The surfactants tested had little effects on the enzyme activity. The endoglucanase showed high activity and stability in the presence of non-polar hydrophobic organic solvents with log Pow≥0.88. Together these results indicated the cellulase from Haloarcula sp. G10 maybe an ideal choice for applications in industrial process under harsh conditions.


Subject(s)
Cellulase/chemistry , Cellulase/metabolism , Haloarcula/enzymology , Organic Chemicals/pharmacology , Solvents/pharmacology , Cellulase/biosynthesis , Cellulase/isolation & purification , Enzyme Stability/drug effects , Haloarcula/metabolism
14.
J Ind Microbiol Biotechnol ; 40(12): 1357-65, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24037323

ABSTRACT

A haloarchaeal strain LLSG7 with cellulolytic activity was isolated from the saline soil of Yuncheng Salt Lake, China. Biochemical and physiological characterization along with 16S rRNA gene sequence analysis placed the isolate in the genus Haloarcula. Cellulase production was strongly influenced by the salinity of the culture medium with the maximum obtained in the presence of 25 % NaCl. Substrate specificity tests showed that the crude cellulase was a multicomponent enzyme system, and zymogram analysis revealed that five different endoglucanases were secreted by strain LLSG7. Optimal cellulase activity was at 50 °C, pH 8.0, and 20 % NaCl. In addition, it was highly active and stable over broad ranges of temperature (40-80 °C), pH (7.0-11.0), and NaCl concentration (17.5-30 %). The cellulase displayed remarkable stability in the presence of non-polar organic solvents with log P ow ≥ 1.97. The crude cellulase secreted by strain LLSG7 was further applied to hydrolyze alkali-pretreated rice straw and the enzymatic hydrolysate was used as the substrate for bioethanol fermentation by Saccharomyces cerevisiae. The yield of ethanol was 0.177 g per gram of pretreated rice straw, suggesting that it might be potentially useful for bioethanol production.


Subject(s)
Cellulase/metabolism , Ethanol/metabolism , Fermentation , Haloarcula/enzymology , Oryza/chemistry , Solvents/chemistry , Agriculture , Biocatalysis , Electrophoresis, Polyacrylamide Gel , Enzyme Stability , Haloarcula/classification , Haloarcula/growth & development , Hydrogen-Ion Concentration , Phylogeny , Refuse Disposal , Saccharomyces cerevisiae/metabolism , Sodium Chloride , Substrate Specificity , Temperature
15.
J Biol Chem ; 288(41): 29247-51, 2013 Oct 11.
Article in English | MEDLINE | ID: mdl-23965994

ABSTRACT

A decrease in water activity was thought to result in smaller enthalpy change values during PPi hydrolysis, indicating the importance of solvation for the reaction. However, the physiological significance of this phenomenon is unknown. Here, we combined biochemistry and calorimetry to solve this problem using NaCl, a physiologically occurring water activity-reducing reagent. The pyrophosphatase activities of extremely halophilic Haloarcula japonica, which can grow at ∼4 M NaCl, and non-halophilic Escherichia coli and Saccharomyces cerevisiae were maximal at 2.0 and 0.1 M NaCl, respectively. Thus, halophilic and non-halophilic pyrophosphatases exhibit distinct maximal activities at different NaCl concentration ranges. Upon calorimetry, the same exothermic enthalpy change of -35 kJ/mol was obtained for the halophile and non-halophiles at 1.5-4.0 and 0.1-2.0 M NaCl, respectively. These results show that solvation changes caused by up to 4.0 M NaCl (water activity of ∼0.84) do not affect the enthalpy change in PPi hydrolysis. It has been postulated that PPi is an ATP analog, having a so-called high energy phosphate bond, and that the hydrolysis of both compounds is enthalpically driven. Therefore, our results indicate that the hydrolysis of high energy phosphate compounds, which are responsible for biological energy conversion, is enthalpically driven within the physiological limits of NaCl.


Subject(s)
Diphosphates/chemistry , Diphosphates/metabolism , Sodium Chloride/chemistry , Thermodynamics , Archaeal Proteins/metabolism , Biocatalysis , Calorimetry/methods , Escherichia coli Proteins/metabolism , Haloarcula/enzymology , Hydrolysis/drug effects , Inorganic Pyrophosphatase/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Sodium Chloride/pharmacology , Solvents/chemistry , Solvents/pharmacology
16.
Biosci Biotechnol Biochem ; 77(2): 281-8, 2013.
Article in English | MEDLINE | ID: mdl-23391916

ABSTRACT

Haloarcula japonica is an extremely halophilic archaeon that requires high concentrations of NaCl to grow. Recently the draft genome sequence of Ha. japonica was determined, and a gene encoding an α-amylase, malA, was identified. The deduced amino acid sequence of MalA, consisting of 663 amino acids, showed homology to α-amylase family enzymes. The sequence did not contain a secretion signal sequence, indicating that the protein is a cytoplasmic enzyme. Transcription of the malA gene was confirmed by reverse transcription (RT)-PCR, and the transcription start site was determined by a 5'-RACE experiment. The malA gene was cloned and expressed in Ha. japonica. The recombinant MalA was purified and characterized. MalA required a high concentration of NaCl for starch-hydrolyzing activity. It showed higher activity on soluble starch, amylose, and amylopectin, and lower activity on glycogen.


Subject(s)
Archaeal Proteins/metabolism , Haloarcula/enzymology , Haloarcula/genetics , alpha-Amylases/metabolism , Amino Acid Sequence , Amylopectin/metabolism , Amylose/metabolism , Archaeal Proteins/genetics , Base Sequence , Cloning, Molecular , Cytoplasm/drug effects , Cytoplasm/enzymology , Gene Expression/drug effects , Haloarcula/drug effects , Molecular Sequence Data , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Salinity , Sequence Homology, Amino Acid , Sodium Chloride/pharmacology , Starch/metabolism , Transcription, Genetic/drug effects , alpha-Amylases/genetics
17.
Chem Biol Interact ; 203(1): 186-90, 2013 Mar 25.
Article in English | MEDLINE | ID: mdl-23041042

ABSTRACT

In an effort to discover novel catalytic bioscavengers of organophosphorus (OP) nerve agents, cell lysates from a diverse set of bacterial strains were screened for their capacity to hydrolyze the OP nerve agents VX, VR, and soman (GD). The library of bacterial strains was identified using both random and rational approaches. Specifically, two representative strains from eight categories of extremophiles were chosen at random. For the rational approach, the protein sequence of organophosphorus hydrolase (OPH) from Brevundimonas diminuta was searched against a non-redundant protein database using the Basic Local Alignment Search Tool to find regions of local similarity between sequences. Over 15 protein sequences with significant sequence similarity to OPH were identified from a variety of bacterial strains. Some of these matches were based on predicted protein structures derived from bacterial genome sequences rather than from bona fide proteins isolated from bacteria. Of the 25 strains selected for nerve agent testing, three bacterial strains had measurable levels of OP hydrolase activity. These strains are Ammoniphilus oxalaticus, Haloarcula sp., and Micromonospora aurantiaca. Lysates from A. oxalaticus had detectable hydrolysis of VR; Haloarcula sp. had appreciable hydrolysis of VX and VR, whereas lysates from M. aurantiaca had detectable hydrolysis of VR and GD.


Subject(s)
Aryldialkylphosphatase/metabolism , Bacterial Proteins/metabolism , Chemical Warfare Agents/metabolism , Organophosphorus Compounds/metabolism , Antidotes/isolation & purification , Antidotes/metabolism , Antidotes/pharmacology , Aryldialkylphosphatase/genetics , Aryldialkylphosphatase/isolation & purification , Bacillales/enzymology , Bacillales/genetics , Bacterial Proteins/genetics , Bacterial Proteins/isolation & purification , Chemical Warfare Agents/toxicity , Drug Discovery , Drug Evaluation, Preclinical , Haloarcula/enzymology , Haloarcula/genetics , Hydrolysis , Micromonospora/enzymology , Micromonospora/genetics , Organophosphorus Compounds/toxicity , Organothiophosphorus Compounds/metabolism , Organothiophosphorus Compounds/toxicity , Paraoxon/metabolism , Paraoxon/toxicity , Soman/metabolism , Soman/toxicity
18.
Ying Yong Sheng Tai Xue Bao ; 23(11): 3103-8, 2012 Nov.
Article in Chinese | MEDLINE | ID: mdl-23431797

ABSTRACT

Soil and saline water samples were collected from the Daishan Saltern of East China, and the halophilic bacteria were isolated and cultured by using selective media, aimed to investigate the diversity and enzyme-producing activity of culturable halophilic bacteria in saltern environment. A total of 181 strains were isolated by culture-dependent method. Specific primers were used to amplify the 16S rRNA gene of bacteria and archaea. The operation taxonomy units (OTUs) were determined by ARDRA method, and the representative strain of each OTU was sequenced. The phylogenetic position of all the isolated strains was determined by 16S rRNA sequencing. The results showed that the isolated 181 strains displayed 21 operational taxonomic units (OTUs), of which, 12 OTUs belonged to halophilic bacteria, and the others belonged to halophilic archaea. Phylogenetic analysis indicated that there were 7 genera presented among the halophilic bacteria group, and 4 genera presented among the halophilic archaea group. The dominant halophilic strains were of Halomonas and Haloarcula, with 46.8% in halophilic bacteria and 49.1% in halophilic archaea group, respectively. Enzyme-producing analysis indicated that most strains displayed enzyme-producing activity, including the activities of producing amylase, proteinase and lipase, and the dominant strains capable of enzyme-producing were of Haloarcula. Our results showed that in the environment of Daishan Saltern, there existed a higher diversity of halophilic bacteria, being a source sink for screening enzyme-producing bacterial strains.


Subject(s)
Biodiversity , Halobacteriaceae/enzymology , Halobacteriaceae/genetics , Sodium Chloride/metabolism , Amylases/metabolism , China , Culture Techniques , Haloarcula/enzymology , Haloarcula/genetics , Haloarcula/isolation & purification , Halobacteriaceae/classification , Halobacteriaceae/isolation & purification , Lipase/metabolism , Peptide Hydrolases/metabolism
19.
Int J Biol Macromol ; 49(5): 955-7, 2011 Dec 01.
Article in English | MEDLINE | ID: mdl-21871483

ABSTRACT

The aim of this study was the investigation of producing cruxrhodopsin as a biomacromolecule with nanofunction from glycerol as carbon source using several process parameters. The optimum medium composition for cruxrhodopsin production was found to contain glycerol 1%, yeast extract 0.05% and K(2)HPO(4) 0.001%. The production of cruxrhodopsin in optimal conditions was 139.86 mg/l. In conclusion, halophilic microorganism Haloarcula sp. IRU1 could be a potential microorganism for production of cruxrhodopsin from glycerol in different conditions.


Subject(s)
Bacteriorhodopsins/metabolism , Biotechnology/methods , Glycerol/metabolism , Haloarcula/enzymology , Nanostructures/chemistry , Bacteriorhodopsins/isolation & purification , Bioreactors , Carbon/metabolism , Cell Extracts , Culture Media , Fermentation , Haloarcula/chemistry , Haloarcula/isolation & purification , Hydrogen-Ion Concentration , Phosphates/metabolism , Potassium Compounds/metabolism , Yeasts/metabolism
20.
Environ Monit Assess ; 169(1-4): 229-36, 2010 Oct.
Article in English | MEDLINE | ID: mdl-19757112

ABSTRACT

The delta-aminolevulinic acid dehydratase (ALAD) enzyme of a novel record for Turkish microbial flora was studied. The isolate I-113 was obtained from Tuz Lake in Turkey and identified as Haloarcula argentinensis. The ALAD enzyme of the isolate was assayed in order to determine its requirements and to be used as biomarker for lead pollution in it's ambient. In enzymic studies, the effects of various metals (Cd, Co, Mg, Mn, Ni, Pb, and Zn), pH (3-11), temperatures (25-55 degrees C), and salinity (15-25%) conditions have been examined. The data obtained from the studies were analyzed statistically by using Kruskal-Wallis, Mann-Whitney, correlation, regression, variance analysis, and significance tests were performed by using SPSS 10.0 for Windows. Although its optimum pH was determined as 7, it was still active at pH 3-11. The optimal temperature for the enzyme was observed to be 30 degrees C. Mn and Pb inhibited its activity significantly (p < 0.05) while Zn increased it slightly. The ALAD enzyme in H. argentinensis could be used as a biomarker for Pb contamination.


Subject(s)
Fresh Water/microbiology , Haloarcula/enzymology , Porphobilinogen Synthase/metabolism , Biomarkers/metabolism , Environmental Monitoring/methods , Fresh Water/chemistry , Haloarcula/drug effects , Haloarcula/isolation & purification , Lead/analysis , Lead/toxicity , Turkey , Water Pollutants, Chemical/analysis , Water Pollutants, Chemical/toxicity
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