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1.
Antonie Van Leeuwenhoek ; 103(3): 635-46, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23142860

ABSTRACT

The draft genome of the soil actinomycete Dietzia cinnamea P4 reveals a versatile group of α/ß-hydrolase fold enzymes. Phylogenetic and comparative sequence analyses were used to classify the α/ß-hydrolases of strain P4 into six different groups: (i) lipases, (ii) esterases, (iii) epoxide hydrolases, (iv) haloacid dehalogenases, (v) C-C breaking enzymes and (vi) serine peptidases. The high number of lipases/esterases (41) and epoxide hydrolase enzymes (14) present in the relatively small (3.6 Mb) P4 genome is unusual; it is likely to be linked to the survival of strain P4 in its natural environment. Strain P4 is thus equipped with a large number of genes which would appear to confer survivability in harsh hot tropical soil. As such, this highly resilient soil bacterial strain provides an interesting genome for enzyme mining for applications in the field of biotransformations of polymeric compounds.


Subject(s)
Actinomycetales/enzymology , Bacillus anthracis/genetics , Biotechnology/methods , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , Hydrolases/metabolism , Actinomycetales/genetics , Bacillus anthracis/isolation & purification , Genome, Bacterial , Hydrolases/classification , Hydrolases/genetics , Molecular Sequence Data , Phylogeny , Sequence Analysis, DNA , Sequence Homology, Amino Acid
2.
Microbiol Res ; 167(6): 317-25, 2012 Jun 20.
Article in English | MEDLINE | ID: mdl-22192836

ABSTRACT

Through the use of molecular and biochemical experiments and bioinformatic tools, this work demonstrates that the PA4921 gene of the Pseudomonas aeruginosa PAO1 genome is a gene responsible for cholinesterase (ChoE) activity. Similar to the acetylcholinesterase (AchE) of Zea mays, this ChoE belongs to the SGNH hydrolase family. In mature ChoE, i.e., without a signal peptide, (18)Ser, (78)Gly, (127)N, and (268)H are conserved aminoacyl residues. Acetylthiocholine (ATC) and propionylthiocholine (PTC) are substrates of this enzyme, but butyrylcholine is an inhibitor. The enzyme also catalyzes the hydrolysis of the artificial esters p-nitrophenyl propionate (pNPP) and p-nitrophenyl butyrate (pNPB) but with lower catalytic efficiency with respect to ATC or PTC. The second difference is that pNPP and pNPB did not produce inhibition at high substrate concentrations, as occurred with ATC and PTC. These differences plus preliminary biochemical and kinetic studies with alkylammonium compounds led us to propose that this enzyme is an acetylcholinesterase (AchE) or propionylcholinesterase. Studies performed with the purified recombinant enzyme indicated that the substrate saturation curves and the catalytic mechanism are similar to those properties described for mammalian AchEs. Therefore, the results of this work suggest that the P. aeruginosa ChoE is an AchE that may also be found in Pseudomonas fluorescens.


Subject(s)
Acetylcholinesterase/genetics , Acetylcholinesterase/metabolism , Pseudomonas aeruginosa/enzymology , Pseudomonas aeruginosa/genetics , Acetylcholinesterase/chemistry , Acetylcholinesterase/classification , Acetylthiocholine/metabolism , Choline/analogs & derivatives , Choline/metabolism , Conserved Sequence , Enzyme Inhibitors/metabolism , Hydrolases/chemistry , Hydrolases/classification , Hydrolases/genetics , Hydrolases/metabolism , Kinetics , Phylogeny , Sequence Homology, Amino Acid , Substrate Specificity , Thiocholine/analogs & derivatives , Thiocholine/metabolism , Zea mays/enzymology , Zea mays/genetics
3.
Genet Mol Res ; 4(4): 616-23, 2005 Dec 30.
Article in English | MEDLINE | ID: mdl-16475106

ABSTRACT

Hydrolytic enzymes from hypopharyngeal gland extracts of newly emerged, nurse and foraging workers of two eusocial bees, Scaptotrigona postica, a native Brazilian stingless bee, and the Africanized honey bee (Apis mellifera) in Brazil, were compared. The hypopharyngeal gland is rich in enzymes in both species. Fifteen different enzymes were found in the extracts, with only a few quantitative differences between the species. Some of the enzymes present in the extracts may have intracellular functions, while others seem to be digestive enzymes. Scaptotrigona postica, had lower beta-glucosidase and higher lipase esterase activities than A. mellifera. The differences may be due to different feeding habits and behavioral peculiarities of the two species.


Subject(s)
Bees/enzymology , Exocrine Glands/enzymology , Hydrolases/isolation & purification , Hypopharynx/enzymology , Animals , Female , Hydrolases/classification
4.
Genet. mol. res. (Online) ; Genet. mol. res. (Online);4(4): 616-623, 2005. tab
Article in English | LILACS | ID: lil-444863

ABSTRACT

Hydrolytic enzymes from hypopharyngeal gland extracts of newly emerged, nurse and foraging workers of two eusocial bees, Scaptotrigona postica, a native Brazilian stingless bee, and the Africanized honey bee (Apis mellifera) in Brazil, were compared. The hypopharyngeal gland is rich in enzymes in both species. Fifteen different enzymes were found in the extracts, with only a few quantitative differences between the species. Some of the enzymes present in the extracts may have intracellular functions, while others seem to be digestive enzymes. Scaptotrigona postica, had lower beta-glucosidase and higher lipase esterase activities than A. mellifera. The differences may be due to different feeding habits and behavioral peculiarities of the two species.


Subject(s)
Animals , Female , Bees/enzymology , Exocrine Glands/enzymology , Hydrolases/isolation & purification , Hypopharynx/enzymology , Hydrolases/classification
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