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1.
Subcell Biochem ; 101: 41-80, 2023.
Article in English | MEDLINE | ID: mdl-36520303

ABSTRACT

The Hsp90 chaperone is known to interact with a diverse array of client proteins. However, in every case examined, Hsp90 is also accompanied by a single or several co-chaperone proteins. One class of co-chaperone contains a tetratricopeptide repeat (TPR) domain that targets the co-chaperone to the C-terminal region of Hsp90. Within this class are Hsp90-binding peptidylprolyl isomerases, most of which belong to the FK506-binding protein (FKBP) family. Despite the common association of FKBP co-chaperones with Hsp90, it is abundantly clear that the client protein influences, and is often influenced by, the particular FKBP bound to Hsp90. Examples include Xap2 in aryl hydrocarbon receptor complexes and FKBP52 in steroid receptor complexes. In this chapter, we discuss the known functional roles played by FKBP co-chaperones and, where possible, relate distinctive functions to structural differences between FKBP members.


Subject(s)
HSP90 Heat-Shock Proteins , Tacrolimus Binding Proteins , Humans , HSP90 Heat-Shock Proteins/chemistry , HSP90 Heat-Shock Proteins/genetics , HSP90 Heat-Shock Proteins/metabolism , Molecular Chaperones/genetics , Molecular Chaperones/metabolism , Peptidylprolyl Isomerase/metabolism , Protein Binding , Tacrolimus Binding Proteins/genetics , Tacrolimus Binding Proteins/chemistry , Tacrolimus Binding Proteins/metabolism , Immunophilins/genetics , Immunophilins/metabolism
2.
Toxins (Basel) ; 11(6)2019 06 18.
Article in English | MEDLINE | ID: mdl-31216655

ABSTRACT

Destruxin A (DA), a major secondary metabolite of Metarhizium anisopliae, has anti-immunity to insects. However, the detailed mechanism and its interactions with target proteins are elusive. Previously, three immunophilins, peptidyl-prolyl cis-trans isomerase (BmPPI), FK506 binding-protein 45 (BmFKBP45) and BmFKBP59 homologue, were isolated from the silkworm, Bombyx mori Bm12 cell line following treatment with DA, which suggested that these proteins were possible DA-binding proteins. To validate the interaction between DA and the three immunophilins, we performed bio-layer interferometry (BLI) assay, and the results showed that DA has interaction with BmPPI, whose affinity constant value is 1.98 × 10-3 M and which has no affinity with FKBP45 and FKBP59 homologue in vitro. Furthermore, we investigated the affinity between DA and human PPI protein (HsPPIA) and the affinity constant (KD) value is 2.22 × 10-3 M. Additionally, we compared the effects of silkworm and human PPI proteins produced by DA and immunosuppressants, cyclosporine A (CsA), and tacrolimus (FK506), by employing I2H (insect two-hybrid) in the SF-9 cell line. The results indicated that in silkworm, the effects created by DA and CsA were stronger than FK506. Furthermore, the effects created by DA in silkworm were stronger than those in humans. This study will offer new thinking to elucidate the molecular mechanism of DA in the immunity system of insects.


Subject(s)
Depsipeptides/toxicity , Immunophilins/metabolism , Insect Proteins/metabolism , Mycotoxins/toxicity , Animals , Bombyx , Immunophilins/genetics , Insect Proteins/genetics , Sf9 Cells , Two-Hybrid System Techniques
3.
Molecules ; 23(4)2018 Apr 19.
Article in English | MEDLINE | ID: mdl-29671793

ABSTRACT

The involvement of plant immunophilins in multiple essential processes such as development, various ways of adapting to biotic and abiotic stresses, and photosynthesis has already been established. Previously, research has demonstrated the involvement of three immunophilin genes (AtCYP19-1/ROC3, AtFKBP65/ROF2, and AtCYP57) in the control of plant response to invasion by various pathogens. Current research attempts to identify host target proteins for each of the selected immunophilins. As a result, candidate interactors have been determined and confirmed using a yeast 2-hybrid (Y2H) system for protein⁻protein interaction assays. The generation of mutant isoforms of ROC3 and AtCYP57 harboring substituted amino acids in the in silico-predicted active sites became essential to achieving significant binding to its target partners. This data shows that ROF2 targets calcium-dependent lipid-binding domain-containing protein (At1g70790; AT1) and putative protein phosphatase (At2g30020; АТ2), whereas ROC3 interacts with GTP-binding protein (At1g30580; ENGD-1) and RmlC-like cupin (At5g39120). The immunophilin AtCYP57 binds to putative pyruvate decarboxylase-1 (Pdc1) and clathrin adaptor complex-related protein (At5g05010). Identified interactors confirm our previous findings that immunophilins ROC3, ROF2, and AtCYP57 are directly involved with stress response control. Further, these findings extend our understanding of the molecular functional pathways of these immunophilins.


Subject(s)
Arabidopsis/metabolism , Immunophilins/metabolism , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Immunophilins/genetics , Peptidylprolyl Isomerase/genetics , Peptidylprolyl Isomerase/metabolism , Plant Immunity/genetics , Plant Immunity/physiology , Plant Proteins/genetics , Plant Proteins/metabolism
4.
Mol Genet Genomics ; 293(2): 381-390, 2018 Apr.
Article in English | MEDLINE | ID: mdl-29128880

ABSTRACT

Plasmodiophora brassicae is a soil-borne pathogen that belongs to Rhizaria, an almost unexplored eukaryotic organism group. This pathogen requires a living host for growth and multiplication, which makes molecular analysis further complicated. To broaden our understanding of a plasmodiophorid such as P. brassicae, we here chose to study immunophilins, a group of proteins known to have various cellular functions, including involvement in plant defense and pathogen virulence. Searches in the P. brassicae genome resulted in 20 putative immunophilins comprising of 11 cyclophilins (CYPs), 7 FK506-binding proteins (FKBPs) and 2 parvulin-like proteins. RNAseq data showed that immunophilins were differentially regulated in enriched life stages such as germinating spores, maturing spores, and plasmodia, and infected Brassica hosts (B. rapa, B. napus and B. oleracea). PbCYP3 was highly induced in all studied life stages and during infection of all three Brassica hosts, and hence was selected for further analysis. PbCYP3 was heterologously expressed in Magnaporthe oryzae gene-inactivated ΔCyp1 strain. The new strain ΔCyp1+ overexpressing PbCYP3 showed increased virulence on rice compared to the ΔCyp1 strain. These results suggest that the predicted immunophilins and particularly PbCYP3 are activated during plant infection. M. oryzae is a well-studied fungal pathogen and could be a valuable tool for future functional studies of P. brassicae genes, particularly elucidating their role during various infection phases.


Subject(s)
Cyclophilins/genetics , Immunophilins/genetics , Plasmodiophorida/genetics , Protozoan Proteins/genetics , Amino Acid Sequence , Brassica/classification , Brassica/parasitology , Cyclophilins/classification , Cyclophilins/metabolism , Gene Expression Profiling/methods , Gene Expression Regulation , Host-Pathogen Interactions , Immunophilins/metabolism , Phylogeny , Plant Diseases/parasitology , Plant Roots/parasitology , Plasmodiophorida/metabolism , Plasmodiophorida/physiology , Protozoan Proteins/metabolism , Sequence Homology, Amino Acid , Spores, Protozoan/genetics
5.
Mol Biol Cell ; 28(22): 3070-3081, 2017 Nov 01.
Article in English | MEDLINE | ID: mdl-28904211

ABSTRACT

Autophagy is an evolutionary conserved process by which eukaryotic cells undergo self-digestion of cytoplasmic components. Here we report that a novel Drosophila immunophilin, which we have named Zonda, is critically required for starvation-induced autophagy. We show that Zonda operates at early stages of the process, specifically for Vps34-mediated phosphatidylinositol 3-phosphate (PI3P) deposition. Zonda displays an even distribution under basal conditions and, soon after starvation, nucleates in endoplasmic reticulum-associated foci that colocalize with omegasome markers. Zonda nucleation depends on Atg1, Atg13, and Atg17 but does not require Vps34, Vps15, Atg6, or Atg14. Zonda interacts physically with Atg1 through its kinase domain, as well as with Atg6 and Vps34. We propose that Zonda is an early component of the autophagy cascade necessary for Vps34-dependent PI3P deposition and omegasome formation.


Subject(s)
Autophagy/physiology , Class III Phosphatidylinositol 3-Kinases/metabolism , Immunophilins/metabolism , Animals , Autophagy-Related Proteins , Drosophila Proteins/genetics , Drosophila Proteins/metabolism , Drosophila melanogaster/genetics , Drosophila melanogaster/metabolism , Immunophilins/genetics , Phagosomes/metabolism , Phosphatidylinositol 3-Kinases/metabolism , Phosphatidylinositol Phosphates/metabolism , Signal Transduction
6.
Sci Rep ; 7(1): 9763, 2017 08 29.
Article in English | MEDLINE | ID: mdl-28852180

ABSTRACT

Aberrant restoration of AR activity is linked with prostate tumor growth, therapeutic failures and development of castrate-resistant prostate cancer. Understanding the processes leading to AR-reactivation should provide the foundation for novel avenues of drug discovery. A differential gene expression study was conducted using biopsies from CaP and BPH patients to identify the components putatively responsible for reinstating AR activity in CaP. From the set of genes upregulated in CaP, FKBP52, an AR co-chaperone, was selected for further analysis. Expression of FKBP52 was positively correlated with that of c-Myc. The functional cross-talk between c-Myc and FKBP52 was established using c-Myc specific-siRNA to LNCaP cells that resulted in reduction of FKBP52. A non-canonical E-box sequence housing a putative c-Myc binding site was detected on the FKBP4 promoter using in silico search. LNCaP cells transfected with the FKBP52 promoter cloned in pGL3 basic showed increased luciferase activity which declined considerably when the promoter-construct was co-transfected with c-Myc specific-siRNA. ChIP-PCR confirmed the binding of c-Myc with the conserved E-box located in the FKBP52 promoter. c-Myc downregulation concomitantly affected expression of FGF8. Since expression of FGF8 is controlled by AR, our study unveiled a novel functional axis between c-Myc, AR and FGF8 operating through FKBP52.


Subject(s)
Gene Expression Regulation , Immunophilins/genetics , Prostatic Hyperplasia/genetics , Prostatic Hyperplasia/metabolism , Prostatic Neoplasms/genetics , Prostatic Neoplasms/metabolism , Signal Transduction , 5' Untranslated Regions , Cell Line, Tumor , Cell Proliferation , Computational Biology/methods , Disease Progression , Fibroblast Growth Factor 8/genetics , Gene Expression Profiling , Gene Ontology , Humans , Immunophilins/metabolism , Male , Models, Biological , Promoter Regions, Genetic , Prostatic Hyperplasia/pathology , Prostatic Neoplasms/pathology , Proto-Oncogene Proteins c-myc/metabolism , Tacrolimus Binding Proteins/genetics , Tacrolimus Binding Proteins/metabolism , Transcriptome
7.
Cell Stress Chaperones ; 22(6): 833-845, 2017 11.
Article in English | MEDLINE | ID: mdl-28567569

ABSTRACT

The novel class of dual-family immunophilins (henceforth abbreviated as DFI) represents naturally occurring chimera of classical FK506-binding protein (FKBP) and cyclophilin (CYN), connected by a flexible linker that may include a three-unit tetratricopeptide (TPR) repeat. Here, I report a comprehensive analysis of all current DFI sequences and their host organisms. DFIs are of two kinds: CFBP (cyclosporin- and FK506-binding protein) and FCBP (FK506- and cyclosporin-binding protein), found in eukaryotes. The CFBP type occurs in select bacteria that are mostly extremophiles, such as psychrophilic, thermophilic, halophilic, and sulfur-reducing. Essentially all DFI organisms are unicellular. I suggest that DFIs are specialized bifunctional chaperones that use their flexible interdomain linker to associate with large polypeptides or multisubunit megacomplexes to promote simultaneous folding or renaturation of two clients in proximity, essential in stressful and denaturing environments. Analysis of sequence homology and predicted 3D structures of the FKBP and CYN domains as well as the TPR linkers upheld the modular nature of the DFIs and revealed the uniqueness of their TPR domain. The CFBP and FCBP genes appear to have evolved in parallel pathways with no obvious single common ancestor. The occurrence of both types of DFI in multiple unrelated phylogenetic clades supported their selection in metabolic and environmental niche roles rather than a traditional taxonomic relationship. Nonetheless, organisms with these rare immunophilins may define an operational taxonomic unit (OTU) bound by the commonality of chaperone function.


Subject(s)
Cyclophilins/genetics , Immunophilins/genetics , Phylogeny , Tacrolimus Binding Proteins/genetics , Amino Acid Sequence/genetics , Cyclophilins/chemistry , Ecology , Humans , Immunophilins/chemistry , Immunophilins/metabolism , Molecular Chaperones/chemistry , Molecular Chaperones/genetics , Molecular Conformation , Protein Binding , Sequence Homology , Structure-Activity Relationship , Tacrolimus Binding Proteins/chemistry , Tetratricopeptide Repeat/genetics
8.
J Cell Biol ; 216(2): 393-408, 2017 Feb.
Article in English | MEDLINE | ID: mdl-28077446

ABSTRACT

In meiotic prophase I, homologous chromosome pairing is promoted through chromosome movement mediated by nuclear envelope proteins, microtubules, and dynein. After proper homologue pairing has been established, the synaptonemal complex (SC) assembles along the paired homologues, stabilizing their interaction and allowing for crossing over to occur. Previous studies have shown that perturbing chromosome movement leads to pairing defects and SC polycomplex formation. We show that FKB-6 plays a role in SC assembly and is required for timely pairing and proper double-strand break repair kinetics. FKB-6 localizes outside the nucleus, and in its absence, the microtubule network is altered. FKB-6 is required for proper movement of dynein, increasing resting time between movements. Attenuating chromosomal movement in fkb-6 mutants partially restores the defects in synapsis, in agreement with FKB-6 acting by decreasing chromosomal movement. Therefore, we suggest that FKB-6 plays a role in regulating dynein movement by preventing excess chromosome movement, which is essential for proper SC assembly and homologous chromosome pairing.


Subject(s)
Caenorhabditis elegans Proteins/metabolism , Caenorhabditis elegans/enzymology , Chromosome Pairing , Chromosome Positioning , Immunophilins/metabolism , Molecular Chaperones/metabolism , Synaptonemal Complex/metabolism , Animals , Animals, Genetically Modified , Caenorhabditis elegans/genetics , Caenorhabditis elegans/growth & development , Caenorhabditis elegans Proteins/genetics , Cytoplasmic Dyneins/genetics , Cytoplasmic Dyneins/metabolism , Dyneins/genetics , Dyneins/metabolism , Genotype , Immunophilins/genetics , In Situ Hybridization, Fluorescence , Microscopy, Fluorescence , Molecular Chaperones/genetics , Mutation , Phenotype , RNA Interference , Signal Transduction , Synaptonemal Complex/genetics , Time Factors
9.
Mol Carcinog ; 56(2): 774-780, 2017 02.
Article in English | MEDLINE | ID: mdl-27479355

ABSTRACT

Genome-wide association studies have reported more than 100 independent common loci associated with breast cancer risk. The contribution of low-frequency or rare variants to breast cancer susceptibility has not been well explored. Thus, we applied exome chip to genotype >200 000 low-frequency and rare variants in 1064 breast cancer cases and 1125 cancer-free controls and subsequently validated promising associations in another 1040 breast cancer cases and 1240 controls. We identified two low-frequency nonsynonymous variants at FKBPL (rs200847762, OR = 0.34, 95% CI = 0.20-0.57, P = 4.31 × 10-5 ) and ARPC1B (rs1045012, OR = 0.56, 95% CI = 0.43-0.74, P = 4.30 × 10-5 ) associated with breast cancer risk. In stratification analyses, we found that the protective effect of rs200847762 was stronger in ER-positive breast cancer (OR = 0.18, 95% CI = 0.06-0.42) than that in ER-negative one (OR = 0.59, 95% CI = 0.31-1.05). Our findings indicate that low-frequency variants may also contribute to breast cancer susceptibility and genetic variants in 6p21.33 and 7q22.1 are important in breast carcinogenesis. © 2016 Wiley Periodicals, Inc.


Subject(s)
Actin-Related Protein 2-3 Complex/genetics , Breast Neoplasms/genetics , Immunophilins/genetics , Polymorphism, Genetic , Adult , Asian People/genetics , Breast/pathology , Breast Neoplasms/diagnosis , Breast Neoplasms/epidemiology , Case-Control Studies , China/epidemiology , Female , Gene Frequency , Genetic Predisposition to Disease , Genome-Wide Association Study , Genotype , Humans , Middle Aged , Tacrolimus Binding Proteins
10.
Sci Rep ; 6: 20914, 2016 Feb 10.
Article in English | MEDLINE | ID: mdl-26861912

ABSTRACT

Neovascular age-related macular degeneration (AMD) and polypoidal choroidal vasculopathy (PCV) are leading causes of blindness in aging populations. This study was conducted to investigate the associations of chromosome 6p21.3 region, including CFB-SKIV2L-TNXB-FKBPL-NOTCH4 genes, with both neovascular AMD and PCV. Six single nucleotide polymorphisms (SNPs) in this region and two known AMD-associated SNPs in CFH (rs800292) and HTRA1 (rs11200638) were genotyped in a Han Chinese cohort composed of 490 neovascular AMD patients, 419 PCV patients and 1316 controls. Among the SNPs, TNXB rs12153855 and FKBPL rs9391734 conferred an increased susceptibility to neovascular AMD (P = 2.8 × 10(-4) and 0.001, OR = 1.80 and 1.76, respectively), while SKIV2L exerted a protective effect on neovascular AMD (P = 2.2 × 10(-4), OR = 0.49). Rs12153855C and rs9391734A alleles could further increase the susceptibility to AMD in subjects with rs800292, rs11200638 and rs429608 risk alleles. However, only the association of SKIV2L rs429608 remained significant after adjusting for rs800292, rs11200638 and the other 5 SNPs. The protective haplotype AATGAG exhibited significant association with neovascular AMD (permutation P = 0.015, OR = 0.34). None of the SNPs in this region was associated with PCV. Association profiles of 6p21.3 region showed discrepancy between neovascular AMD and PCV, indicating possible molecular and pathological differences between these two retinal disorders.


Subject(s)
Choroidal Neovascularization/genetics , Chromosomes, Human, Pair 6 , Genetic Association Studies , Genetic Variation , Macular Degeneration/genetics , Aged , Aged, 80 and over , Alleles , Case-Control Studies , Choroidal Neovascularization/pathology , DNA Helicases/genetics , Female , Gene Frequency , Genetic Loci , Genotype , Humans , Immunophilins/genetics , Linkage Disequilibrium , Macular Degeneration/pathology , Male , Middle Aged , Polymorphism, Single Nucleotide , Proto-Oncogene Proteins/genetics , Receptor, Notch4 , Receptors, Notch/genetics , Tacrolimus Binding Proteins , Tenascin/genetics
11.
Nucleic Acids Res ; 44(6): 2909-25, 2016 Apr 07.
Article in English | MEDLINE | ID: mdl-26762975

ABSTRACT

The nuclear immunophilin FKBP25 interacts with chromatin-related proteins and transcription factors and is suggested to interact with nucleic acids. Currently the structural basis of nucleic acid binding by FKBP25 is unknown. Here we determined the nuclear magnetic resonance (NMR) solution structure of full-length human FKBP25 and studied its interaction with DNA. The FKBP25 structure revealed that the N-terminal helix-loop-helix (HLH) domain and C-terminal FK506-binding domain (FKBD) interact with each other and that both of the domains are involved in DNA binding. The HLH domain forms major-groove interactions and the basic FKBD loop cooperates to form interactions with an adjacent minor-groove of DNA. The FKBP25-DNA complex model, supported by NMR and mutational studies, provides structural and mechanistic insights into the nuclear immunophilin-mediated nucleic acid recognition.


Subject(s)
DNA/chemistry , Immunophilins/chemistry , Tacrolimus Binding Proteins/chemistry , Base Sequence , Binding Sites , Cloning, Molecular , DNA/genetics , DNA/metabolism , Escherichia coli/genetics , Escherichia coli/metabolism , Gene Expression , Humans , Immunophilins/genetics , Immunophilins/metabolism , Molecular Docking Simulation , Molecular Sequence Data , Nuclear Magnetic Resonance, Biomolecular , Protein Binding , Protein Interaction Domains and Motifs , Protein Structure, Secondary , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Tacrolimus Binding Proteins/genetics , Tacrolimus Binding Proteins/metabolism , YY1 Transcription Factor/chemistry , YY1 Transcription Factor/genetics , YY1 Transcription Factor/metabolism
12.
Parasitology ; 142(11): 1404-14, 2015 Sep.
Article in English | MEDLINE | ID: mdl-26156578

ABSTRACT

Immunophilins comprise two protein families, cyclophilins (CYPs) and FK506-binding proteins (FKBPs), and are the major receptors for the immunosuppressive drugs cyclosporin A (CsA) and FK506 (tacrolimus), respectively. Most eukaryotic species have at least one immunophilin and some of them have been associated with pathogenesis of infectious or parasitic diseases or the action of antiparasitic drugs. The human malarial parasite Plasmodium falciparum has 13 immunophilin or immunophilin-like genes but the functions of their products are unknown. We set out to identify the parasite proteins that interact with the major CYPs, PfCYP19A and PfCYP19B, and the FKBP, PfFKBP35, using a combination of co-immunoprecipitation and yeast two-hybrid screening. We identified a cohort of putative interacting partners and further investigation of some of these revealed potentially novel roles in parasite biology. We demonstrated that (i) P. falciparum CYPs interacted with the heat shock protein 70, (ii) treatment of parasites with CYP ligands disrupted transport of the rhoptry-associated protein 1, and (iii) PfFKBP35 interacted with parasite histones in a way that might modulate gene expression. These findings begin to elucidate the functions of immunophilins in malaria. Furthermore, the known antimalarial effects of CsA, FK506 and non-immunosuppressive derivatives of these immunophilin ligands could be mediated through these partner proteins.


Subject(s)
Cyclosporine/metabolism , Immunophilins/metabolism , Plasmodium falciparum/immunology , Tacrolimus Binding Proteins/metabolism , Tacrolimus/metabolism , Animals , Antibodies, Protozoan/immunology , Antimalarials/pharmacology , Cyclophilins/genetics , Cyclophilins/metabolism , Female , Humans , Immunophilins/genetics , Plasmodium falciparum/genetics , Plasmodium falciparum/metabolism , Protozoan Proteins/genetics , Protozoan Proteins/metabolism , Rabbits , Tacrolimus Binding Proteins/genetics , Two-Hybrid System Techniques
13.
Am J Hum Genet ; 96(5): 832-40, 2015 May 07.
Article in English | MEDLINE | ID: mdl-25937444

ABSTRACT

Genome-wide association studies have successfully identified a subset of common variants associated with lung cancer risk. However, these variants explain only a fraction of lung cancer heritability. It has been proposed that low-frequency or rare variants might have strong effects and contribute to the missing heritability. To assess the role of low-frequency or rare variants in lung cancer development, we analyzed exome chips representing 1,348 lung cancer subjects and 1,998 control subjects during the discovery stage and subsequently evaluated promising associations in an additional 4,699 affected subjects and 4,915 control subjects during the replication stages. Single-variant and gene-based analyses were carried out for coding variants with a minor allele frequency less than 0.05. We identified three low-frequency missense variants in BAT2 (rs9469031, c.1544C>T [p.Pro515Leu]; odds ratio [OR] = 0.55, p = 1.28 × 10(-10)), FKBPL (rs200847762, c.410C>T [p.Pro137Leu]; OR = 0.25, p = 9.79 × 10(-12)), and BPIFB1 (rs6141383, c.850G>A [p.Val284Met]; OR = 1.72, p = 1.79 × 10(-7)); these variants were associated with lung cancer risk. rs9469031 in BAT2 and rs6141383 in BPIFB1 were also associated with the age of onset of lung cancer (p = 0.001 and 0.006, respectively). BAT2 and FKBPL at 6p21.33 and BPIFB1 at 20q11.21 were differentially expressed in lung tumors and paired normal tissues. Gene-based analysis revealed that FKBPL, in which two independent variants were identified, might account for the association with lung cancer risk at 6p21.33. Our results highlight the important role low-frequency variants play in lung cancer susceptibility and indicate that candidate genes at 6p21.33 and 20q11.21 are potentially biologically relevant to lung carcinogenesis.


Subject(s)
Genetic Predisposition to Disease , Genome-Wide Association Study , Lung Neoplasms/genetics , Asian People , Autoantigens/genetics , Chromosomes, Human, Pair 20/genetics , Chromosomes, Human, Pair 6/genetics , Fatty Acid-Binding Proteins , Female , Gene Frequency , Genotype , Humans , Immunophilins/genetics , Lung Neoplasms/pathology , Male , Proteins/genetics , Risk Factors , Tacrolimus Binding Proteins
14.
Curr Mol Pharmacol ; 9(1): 66-95, 2015.
Article in English | MEDLINE | ID: mdl-25986567

ABSTRACT

The steroid receptor-associated TPR cochaperones FKBP51, FKBP52, CyP40 and PP5 have non-redundant roles in steroid receptor function that impact steroid hormone-binding affinity, nucleocyoplasmic shuttling and transcriptional activation of target genes in a tissue-specific manner. Aberrant expression of these TPR immunophilins has the potential to cause steroid-based diseases, including breast and prostate cancer, diabetes and metabolic disorders, male and female infertility and major depressive and neurodegenerative disorders. This review summaries the function of these proteins as cochaperones in steroid receptor-Hsp90 complexes and elaborates on their role in alternative, Hsp90-dependent and -independent signalling pathways not involving steroid receptors. The review also extensively covers current knowledge of the link between the steroid receptor-associated immunophilins and human disease. An improved understanding of their mechanisms of action has revealed opportunities for molecular therapies to enhance or inhibit cellular processes under their control that contribute both to human health and disease.


Subject(s)
HSP90 Heat-Shock Proteins/metabolism , Immunophilins/metabolism , Receptors, Steroid/metabolism , Signal Transduction , Animals , Depressive Disorder/drug therapy , Depressive Disorder/genetics , Depressive Disorder/metabolism , Drug Discovery , Humans , Immunophilins/chemistry , Immunophilins/genetics , Metabolic Diseases/drug therapy , Metabolic Diseases/genetics , Metabolic Diseases/metabolism , Models, Molecular , Molecular Targeted Therapy , Neoplasms/metabolism , Neurodegenerative Diseases/drug therapy , Neurodegenerative Diseases/genetics , Neurodegenerative Diseases/metabolism , Protein Conformation
15.
Oncotarget ; 6(14): 12209-23, 2015 May 20.
Article in English | MEDLINE | ID: mdl-25906750

ABSTRACT

FK506-binding protein-like (FKBPL) has established roles as an anti-tumor protein, with a therapeutic peptide based on this protein, ALM201, shortly entering phase I/II clinical trials. Here, we evaluated FKBPL's prognostic ability in primary breast cancer tissue, represented on tissue microarrays (TMA) from 3277 women recruited into five independent retrospective studies, using immunohistochemistry (IHC). In a meta-analysis, FKBPL levels were a significant predictor of BCSS; low FKBPL levels indicated poorer breast cancer specific survival (BCSS) (hazard ratio (HR) = 1.30, 95% confidence interval (CI) 1.14-1.49, p < 0.001). The prognostic impact of FKBPL remained significant after adjusting for other known prognostic factors (HR = 1.25, 95% CI 1.07-1.45, p = 0.004). For the sub-groups of 2365 estrogen receptor (ER) positive patients and 1649 tamoxifen treated patients, FKBPL was significantly associated with BCSS (HR = 1.34, 95% CI 1.13-1.58, p < 0.001, and HR = 1.25, 95% CI 1.04-1.49, p = 0.02, respectively). A univariate analysis revealed that FKBPL was also a significant predictor of relapse free interval (RFI) within the ER positive patient group, but it was only borderline significant within the smaller tamoxifen treated patient group (HR = 1.32 95% CI 1.05-1.65, p = 0.02 and HR = 1.23 95% CI 0.99-1.54, p = 0.06, respectively). The data suggests a role for FKBPL as a prognostic factor for BCSS, with the potential to be routinely evaluated within the clinic.


Subject(s)
Breast Neoplasms/genetics , Immunophilins/genetics , Immunophilins/metabolism , Breast Neoplasms/mortality , Breast Neoplasms/pathology , Cohort Studies , Female , Humans , Precision Medicine , Prognosis , Survival Analysis , Tacrolimus Binding Proteins
16.
J Cell Biol ; 208(7): 961-74, 2015 Mar 30.
Article in English | MEDLINE | ID: mdl-25800056

ABSTRACT

We previously identified Waf1 Cip1 stabilizing protein 39 (WISp39) as a binding partner for heat shock protein 90 (Hsp90). We now report that WISp39 has an essential function in the control of directed cell migration, which requires WISp39 interaction with Hsp90. WISp39 knockdown (KD) resulted in the loss of directional motility of mammalian cells and profound changes in cell morphology, including the loss of a single leading edge. WISp39 binds Coronin 1B, known to regulate the Arp2/3 complex and Cofilin at the leading edge. WISp39 preferentially interacts with phosphorylated Coronin 1B, allowing it to complex with Slingshot phosphatase (SSH) to dephosphorylate and activate Cofilin. WISp39 also regulates Arp2/3 complex localization at the leading edge. WISp39 KD-induced morphological changes could be rescued by overexpression of Coronin 1B together with a constitutively active Cofilin mutant. We conclude that WISp39 associates with Hsp90, Coronin 1B, and SSH to regulate Cofilin activation and Arp2/3 complex localization at the leading edge.


Subject(s)
Actin Depolymerizing Factors/metabolism , Actin-Related Protein 2-3 Complex/metabolism , Immunophilins/metabolism , Microfilament Proteins/metabolism , Actin Depolymerizing Factors/genetics , Cell Line, Tumor , Cell Movement/genetics , Enzyme Activation/genetics , HEK293 Cells , HSP90 Heat-Shock Proteins/metabolism , HeLa Cells , Humans , Immunophilins/genetics , Microfilament Proteins/biosynthesis , Phosphoprotein Phosphatases , Phosphorylation , Protein Binding , RNA Interference , RNA, Small Interfering , Tacrolimus Binding Proteins
17.
Arterioscler Thromb Vasc Biol ; 35(4): 845-54, 2015 Apr.
Article in English | MEDLINE | ID: mdl-25767277

ABSTRACT

OBJECTIVE: The antitumor effects of FK506-binding protein like (FKBPL) and its extracellular role in angiogenesis are well characterized; however, its role in physiological/developmental angiogenesis and the effect of FKBPL ablation has not been evaluated. This is important as effects of some angiogenic proteins are dosage dependent. Here we evaluate the regulation of FKBPL secretion under angiogenic stimuli, as well as the effect of FKBPL ablation in angiogenesis using mouse and zebrafish models. APPROACH AND RESULTS: FKBPL is secreted maximally by human microvascular endothelial cells and fibroblasts, and this was specifically downregulated by proangiogenic hypoxic signals, but not by the angiogenic cytokines, VEGF or IL8. FKBPL's critical role in angiogenesis was supported by our inability to generate an Fkbpl knockout mouse, with embryonic lethality occurring before E8.5. However, whilst Fkbpl heterozygotic embryos showed some vasculature irregularities, the mice developed normally. In murine angiogenesis models, including the ex vivo aortic ring assay, in vivo sponge assay, and tumor growth assay, Fkbpl(+/-) mice exhibited increased sprouting, enhanced vessel recruitment, and faster tumor growth, respectively, supporting the antiangiogenic function of FKBPL. In zebrafish, knockdown of zFkbpl using morpholinos disrupted the vasculature, and the phenotype was rescued with hFKBPL. Interestingly, this vessel disruption was ineffective when zcd44 was knocked-down, supporting the dependency of zFkbpl on zCd44 in zebrafish. CONCLUSIONS: FKBPL is an important regulator of angiogenesis, having an essential role in murine and zebrafish blood vessel development. Mouse models of angiogenesis demonstrated a proangiogenic phenotype in Fkbpl heterozygotes.


Subject(s)
Aorta/metabolism , Carcinoma, Lewis Lung/blood supply , Carcinoma, Lewis Lung/metabolism , Immunophilins/metabolism , Neovascularization, Pathologic , Tacrolimus Binding Proteins/metabolism , Zebrafish Proteins/metabolism , Animals , Carcinoma, Lewis Lung/pathology , Cell Hypoxia , Female , Gene Expression Regulation, Developmental , Genotype , Humans , Hyaluronan Receptors/genetics , Hyaluronan Receptors/metabolism , Immunophilins/genetics , MCF-7 Cells , Male , Mice, Inbred C57BL , Mice, Transgenic , Neovascularization, Physiologic , Phenotype , Signal Transduction , Tacrolimus Binding Proteins/genetics , Time Factors , Tumor Burden , Zebrafish , Zebrafish Proteins/genetics
18.
Reprod Domest Anim ; 50(2): 195-199, 2015 Apr.
Article in English | MEDLINE | ID: mdl-25495881

ABSTRACT

In stallions, impaired acrosome reaction (IAR) may often cause subfertility. Single nucleotide polymorphisms (SNPs) within FK506-binding protein (FKBP6) seem to be associated with IAR in stallions. However, their effect on stallion fertility has not yet been quantified. Using whole-genome sequence data of seven stallions, we searched FKBP6 for mutations to perform an association study in Hanoverian stallions with estimated breeding values for the paternal component of the pregnancy rate per oestrus cycle (EBV-PAT) as target trait. Genotyping five exonic mutations within FKBP6 revealed a significant association of the SNP g.11040379C>A (p.167H>N) with EBV-PAT in 216 Hanoverian stallions. The difference among the two homozygous genotypes was 7.62% in EBV-PAT, corresponding to one standard deviation of EBV-PAT. In conclusion, in Hanoverian stallions, the FKBP6-associated SNP g.11040379C>A confers higher conception rates in A/A homozygous and lower conception rates in C/C homozygous Hanoverian stallions. Thus, an FKBP6-associated missense mutation is significantly associated with stallion fertility.


Subject(s)
Fertility/genetics , Horses/genetics , Horses/physiology , Immunophilins/metabolism , Tacrolimus Binding Proteins/metabolism , Animals , Female , Fertility/physiology , Gene Expression Regulation/physiology , Genotype , Haplotypes , Immunophilins/genetics , Male , Mutation , Polymorphism, Single Nucleotide , Pregnancy , Tacrolimus Binding Proteins/genetics
19.
OMICS ; 18(10): 645-57, 2014 Oct.
Article in English | MEDLINE | ID: mdl-25259854

ABSTRACT

Abstract Phoma stem canker (blackleg) is a disease of world-wide importance on oilseed rape (Brassica napus) and can cause serious losses for crops globally. The disease is caused by dothideomycetous fungus, Leptosphaeria maculans, which is highly virulent/aggressive. Cyclophilins (CYPs) and FK506-binding proteins (FKBPs) are ubiquitous proteins belonging to the peptidyl-prolyl cis/trans isomerase (PPIase) family. They are collectively referred to as immunophilins (IMMs). In the present study, IMM genes, CYP and FKBP in haploid strain v23.1.3 of L. maculans genome, were identified and classified. Twelve CYPs and five FKBPs were determined in total. Domain architecture analysis revealed the presence of a conserved cyclophilin-like domain (CLD) in the case of CYPs and FKBP_C in the case of FKBPs. Interestingly, IMMs in L. maculans also subgrouped into single domain (SD) and multidomain (MD) proteins. They were primarily found to be localized in cytoplasm, nuclei, and mitochondria. Homologous and orthologous gene pairs were also determined by comparison with the model organism Saccharomyces cerevisiae. Remarkably, IMMs of L. maculans contain shorter introns in comparison to exons. Moreover, CYPs, in contrast with FKBPs, contain few exons. However, two CYPs were determined as being intronless. The expression profile of IMMs in both mycelium and infected primary leaves of B. napus demonstrated their potential role during infection. Secondary structure analysis revealed the presence of atypical eight ß strands and two α helices fold architecture. Gene ontology analysis of IMMs predicted their significant role in protein folding and PPIase activity. Taken together, our findings for the first time present new prospects of this highly conserved gene family in phytopathogenic fungus.


Subject(s)
Ascomycota/genetics , Brassica napus/microbiology , Fungal Proteins/genetics , Immunophilins/genetics , Amino Acid Sequence , Conserved Sequence , Gene Ontology , Genome, Fungal , Immunophilins/chemistry , Molecular Sequence Data , Phylogeny , Plant Diseases/microbiology , Protein Structure, Tertiary , Transcriptome
20.
Genetics ; 196(4): 1041-5, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24514906

ABSTRACT

The centromeric histone H3 variant Cse4 in Saccharomyces cerevisiae is polyubiquitylated and degraded in a proteasome-dependent manner. We report here that the proline isomerase Fpr3 regulates Cse4 proteolysis. Structural change in Cse4 by Fpr3 might be important for the interaction between Cse4 and the E3 ubiquitin ligase Psh1.


Subject(s)
Chromosomal Proteins, Non-Histone/metabolism , DNA-Binding Proteins/metabolism , Immunophilins/metabolism , Peptide Elongation Factors/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Ubiquitin-Protein Ligases/metabolism , Chromosomal Instability , Chromosomes, Fungal , Immunophilins/genetics , Mitosis , Proteasome Endopeptidase Complex/metabolism , Proteolysis , Saccharomyces cerevisiae/growth & development , Saccharomyces cerevisiae Proteins/genetics , Ubiquitination
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