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1.
Sci Rep ; 11(1): 21544, 2021 11 03.
Article in English | MEDLINE | ID: mdl-34732792

ABSTRACT

Arapaima gigas is one of the largest freshwater fish species of high ecological and economic importance. Overfishing and habitat destruction are severe threats to the remaining wild populations. By incorporating a chromosomal Hi-C contact map, we improved the arapaima genome assembly to chromosome-level, revealing an unexpected high degree of chromosome rearrangements during evolution of the bonytongues (Osteoglossiformes). Combining this new assembly with pool-sequencing of male and female genomes, we identified id2bbY, a duplicated copy of the inhibitor of DNA binding 2b (id2b) gene on the Y chromosome as candidate male sex-determining gene. A PCR-test for id2bbY was developed, demonstrating that this gene is a reliable male-specific marker for genotyping. Expression analyses showed that this gene is expressed in juvenile male gonads. Its paralog, id2ba, exhibits a male-biased expression in immature gonads. Transcriptome analyses and protein structure predictions confirm id2bbY as a prime candidate for the master sex-determiner. Acting through the TGFß signaling pathway, id2bbY from arapaima would provide the first evidence for a link of this family of transcriptional regulators to sex determination. Our study broadens our current understanding about the evolution of sex determination genetic networks and provide a tool for improving arapaima aquaculture for commercial and conservation purposes.


Subject(s)
Fishes/genetics , Fishes/physiology , Gene Duplication , Inhibitor of Differentiation Protein 2/genetics , Inhibitor of Differentiation Protein 2/physiology , Sex Chromosomes , Animals , Chromosome Mapping , Conservation of Natural Resources , DNA/metabolism , Evolution, Molecular , Female , Fisheries , Genetic Markers/genetics , Genotype , Male , Phenotype , Phylogeny , Polymerase Chain Reaction , Protein Structure, Secondary , Protein Structure, Tertiary , Sequence Analysis, DNA , Y Chromosome
2.
Biochem Biophys Res Commun ; 521(2): 353-359, 2020 01 08.
Article in English | MEDLINE | ID: mdl-31668809

ABSTRACT

The conventional dendritic cells (cDCs) and plasmacytoid DCs (pDCs) originate from the same common dendritic cell precursor cells in the bone marrow. The pDCs produce large amounts of type 1 interferon in response to foreign nucleic acid and crucially contribute to host defense against viral infection. Tumor necrosis factor (TNF) receptor-associated factor 5 (TRAF5) is a pivotal component of various TNF receptor signaling pathways in the immune system. Although the functions of TRAF5 in T and B lymphocytes have been well studied, its roles in pDCs remains to be fully elucidated. In this study, we show that the expression of TRAF5 supports the generation of pDCs in the bone marrow and also critically contributes to the homeostasis of the pDC subset in the periphery in a cell-intrinsic manner. Furthermore, we provide evidence that TRAF5 promotes the commitment of DC precursor cells toward pDC versus cDC subsets, which is regulated by the balance of transcription factors TCF4 and ID2. Together our findings reveal that TRAF5 acts as a positive regulator of pDC differentiation from bone marrow progenitors.


Subject(s)
Bone Marrow Cells/cytology , Dendritic Cells/cytology , Stem Cells/cytology , TNF Receptor-Associated Factor 5/physiology , Animals , Bone Marrow , Cell Differentiation , Cells, Cultured , Humans , Inhibitor of Differentiation Protein 2/physiology , Transcription Factor 4/physiology , Transcription Factors/physiology
3.
Mol Cell Biol ; 38(9)2018 05 01.
Article in English | MEDLINE | ID: mdl-29463648

ABSTRACT

The cellular components and function of the gastrointestinal epithelium exhibit distinct characteristics depending on the region, e.g., stomach or intestine. How these region-specific epithelial characteristics are generated during development remains poorly understood. Here, we report on the involvement of the helix-loop-helix inhibitor Id2 in establishing the specific characteristics of the intestinal epithelium. Id2-/- mice developed tumors in the small intestine. Histological analysis indicated that the intestinal tumors were derived from gastric metaplasia formed in the small intestine during development. Heterotopic Id2 expression in developing gastric epithelium induced a fate change to intestinal epithelium. Gene expression analysis revealed that foregut-enriched genes encoding Irx3 and Irx5 were highly induced in the midgut of Id2-/- embryos, and transgenic mice expressing Irx5 in the midgut endoderm developed tumors recapitulating the characteristics of Id2-/- mice. Altogether, our results demonstrate that Id2 plays a crucial role in the development of regional specificity in the gastrointestinal epithelium.


Subject(s)
Homeodomain Proteins/metabolism , Inhibitor of Differentiation Protein 2/metabolism , Inhibitor of Differentiation Protein 2/physiology , Transcription Factors/metabolism , Animals , Cell Differentiation/genetics , Cell Differentiation/physiology , Gene Expression Regulation/genetics , Homeodomain Proteins/genetics , Homeodomain Proteins/physiology , Intestinal Mucosa/metabolism , Intestinal Mucosa/physiology , Intestine, Small/physiology , Intestines/physiology , Metaplasia , Mice , Mice, 129 Strain , Protein Domains , Stomach , Transcription Factors/genetics , Transcription Factors/physiology
4.
Int J Cardiol ; 228: 796-804, 2017 Feb 01.
Article in English | MEDLINE | ID: mdl-27888757

ABSTRACT

BACKGROUND: Endothelial progenitor cells (EPCs) play a pivotal role in endothelial repair following artery injury, however, the molecular mechanism of late outgrowth EPCs (LEPCs) in endothelial repair remained to be studied. Bone morphogenetic protein 4 (BMP4) is involved in vascular injury-mediated mobilization and homing of LEPCs. Here, we investigated the influence of BMP4-modified signaling pathway in LEPC-related endothelial repair of human and underlying molecular mechanism. METHODS AND RESULTS: In vitro, after a 28day culture, human LEPCs were pretreated with different concentrations of recombinant BMP4 (0, 10, 50, or 100ng/mL), which markedly augmented the migration and adhesion in vitro and demonstrated a significantly accelerated in vivo endothelial repair capacity of human LEPCs after transplantation into nude mice with carotid artery denudation injury. Moreover, the main Id gene (Id2), a well-characterized down-streaming target of BMP4, upregulated in LEPCs incubated with recombinant BMP4. The BMP4-induced enhancement in in vitro functional activities and in vivo endothelial repair capacity of human LEPCs were abolished by pretreatment with BMP antagonist Noggin or shRNA-mediated knockdown of BMP4 expression. Furthermore, BMP4 gene transfer remarkably activated BMP4-mediated signaling pathway and facilitated therapeutic endothelial repair capacity of LEPCs, and the improved functional activities of human LEPCs could be inhibited by Noggin. CONCLUSION: Thus, the present study demonstrates for the first time that BMP4-related signaling pathway is essential with endothelial repair capacity of LEPCs in human. The upregulation of BMP4-modified signaling pathway in human LEPCs may be a novel therapeutic strategy for endothelial repair after injury.


Subject(s)
Bone Morphogenetic Protein 4/physiology , Carotid Artery Injuries/physiopathology , Endothelial Progenitor Cells/physiology , Inhibitor of Differentiation Protein 2/physiology , Signal Transduction/physiology , Adult , Animals , Carotid Artery Injuries/pathology , Cell Adhesion , Cell Movement , Disease Models, Animal , Female , Humans , Male , Mice , Mice, Nude , Wound Healing/physiology , Young Adult
5.
Reproduction ; 153(2): 211-220, 2017 02.
Article in English | MEDLINE | ID: mdl-27864336

ABSTRACT

Generation of male germ cells from pluripotent cells could provide male gametes for treating male infertility and offer an ideal model for unveiling molecular mechanisms of spermatogenesis. However, the influence and exact molecular mechanisms, especially downstream effectors of BMP4 signaling pathways, in male germ cell differentiation of the induce pluripotent stem (iPS) cells, remain unknown. This study was designed to explore the role and mechanism of BMP4 signaling in the differentiation of mouse iPS cells to male germ cells. Embryoid body (EB) formation and recombinant BMP4 or Noggin were utilized to evaluate the effect of BMP4 on male germ cell generation from mouse iPS cells. Germ cell-specific genes and proteins as well as the downstream effectors of BMP4 signaling pathway were assessed using real-time PCR and Western blots. We found that BMP4 ligand and its multiple receptors, including BMPR1a, BMPR1b and BMPR2, were expressed in mouse iPS cells. Real-time PCR and Western blots revealed that BMP4 could upregulate the levels of genes and proteins for germ cell markers in iPS cells-derived EBs, whereas Noggin decreased their expression in these cells. Moreover, Smad1/5 phosphorylation, Gata4 transcription and the transcripts of Id1 and Id2 were enhanced by BMP4 but decreased when exposed to Noggin. Collectively, these results suggest that BMP4 promotes the generation of male germ cells from iPS cells via Smad1/5 pathway and the activation of Gata4, Id1 and Id2 This study thus offers novel insights into molecular mechanisms underlying male germ cell development.


Subject(s)
Bone Morphogenetic Protein 4/physiology , Cell Differentiation/physiology , Germ Cells/cytology , Induced Pluripotent Stem Cells/cytology , Animals , Blotting, Western , Bone Morphogenetic Protein 4/genetics , Cell Line , GATA4 Transcription Factor/physiology , Gene Expression , Induced Pluripotent Stem Cells/physiology , Inhibitor of Differentiation Protein 1/physiology , Inhibitor of Differentiation Protein 2/physiology , Male , Mice , Real-Time Polymerase Chain Reaction , Signal Transduction/physiology , Smad1 Protein/physiology , Smad5 Protein/physiology , Spermatozoa/cytology
6.
Behav Brain Res ; 292: 528-36, 2015 Oct 01.
Article in English | MEDLINE | ID: mdl-26187693

ABSTRACT

Cerebral ischemic stroke has long been recognized as a prevalent and serious neurological disease that was associated with high mortality and morbidity. However, the current therapeutic protocols remain suboptimal with major mechanisms underlying stroke urgently warranted. Inhibitor of DNA binding/differentiation 2 (Id2) is found to be up-regulated in neuronal cells following hypoxia/ischemia (H/I). This study was aimed to investigate whether knockdown of Id2 in neuronal cells could protect them from hypoxic and ischemic injury both in vitro and in vivo. Flow cytometric analysis was employed to assess neuronal apoptosis in CoCl2-treated neuroblastoma B35 cells engineered to overexpress or knockdown Id2 expression. In vivo knockdown of Id2 was performed in Sprague-Dawley rats by a single intracerebroventricular injection of Cy3-labeled and cholesterol-modified Id2-siRNA. We found that knockdown of Id2 attenuated H/I-induced neuronal apoptosis in vitro while overexpression of Id2 produced an opposite effect. In a rat model of middle cerebral artery occlusion (MCAO), in vivo knockdown of Id2 significantly improved neurological deficits, reduced the volume of ischemic infarction and diminished the neuronal apoptosis in the penumbra area. Double immunofluorescence staining showed less co-localization of retinoblastoma tumor suppressor protein (Rb)-Id2 but greater co-localization of Rb-E2F1 in the penumbra area. Cell cycle assay further demonstrated that Id2 knockdown induced G0/G1 cell cycle arrest in CoCl2-treated B35 cells. The present data support the implication of Id2 in the modulation of H/I-induced neuronal apoptosis and may provide a potential therapeutic option to protect brain tissues from ischemic injury by inhibition of its expression.


Subject(s)
Apoptosis , Hypoxia-Ischemia, Brain/physiopathology , Inhibitor of Differentiation Protein 2/physiology , Neurons/physiology , Animals , Brain/metabolism , Brain/pathology , Brain/physiopathology , Cell Cycle Checkpoints , Cell Line, Tumor , Gene Knockdown Techniques , Hypoxia-Ischemia, Brain/metabolism , Hypoxia-Ischemia, Brain/pathology , Inhibitor of Differentiation Protein 2/genetics , Neurons/metabolism , RNA Interference , Rats , Rats, Sprague-Dawley
7.
Mech Dev ; 138 Pt 3: 399-414, 2015 Nov.
Article in English | MEDLINE | ID: mdl-26022495

ABSTRACT

During development, inhibitor of DNA binding (Id) proteins, a subclass of the helix-loop-helix family of proteins, regulate cellular proliferation, differentiation, and apoptosis in various organs. However, a functional role of Id2a in liver development has not yet been reported. Here, using zebrafish as a model organism, we provide in vivo evidence that Id2a regulates hepatoblast proliferation and cell death during liver development. Initially, in the liver, id2a is expressed in hepatoblasts and after their differentiation, id2a expression is restricted to biliary epithelial cells. id2a knockdown in zebrafish embryos had no effect on hepatoblast specification or hepatocyte differentiation. However, liver size was greatly reduced in id2a morpholino-injected embryos, indicative of a hepatic outgrowth defect attributable to the significant decrease in proliferating hepatoblasts concomitant with the significant increase in hepatoblast cell death. Altogether, these data support the role of Id2a as an important regulator of hepatic outgrowth via modulation of hepatoblast proliferation and survival during liver development in zebrafish.


Subject(s)
Inhibitor of Differentiation Protein 2/physiology , Liver/embryology , Zebrafish Proteins/physiology , Zebrafish/embryology , Zebrafish/physiology , Animals , Animals, Genetically Modified , Bile Ducts, Intrahepatic/embryology , Cell Death , Cell Differentiation , Cell Lineage , Cell Proliferation , Gene Expression Regulation, Developmental , Gene Knockdown Techniques , Hepatocytes/cytology , In Situ Hybridization , Inhibitor of Differentiation Protein 2/antagonists & inhibitors , Inhibitor of Differentiation Protein 2/genetics , Liver/cytology , Organogenesis/genetics , Organogenesis/physiology , Zebrafish/genetics , Zebrafish Proteins/antagonists & inhibitors , Zebrafish Proteins/genetics
8.
Stem Cells ; 33(3): 892-903, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25376791

ABSTRACT

The teleost brain has the remarkable ability to generate new neurons and to repair injuries during adult life stages. Maintaining life-long neurogenesis requires careful management of neural stem cell pools. In a genome-wide expression screen for transcription regulators, the id1 gene, encoding a negative regulator of E-proteins, was found to be upregulated in response to injury. id1 expression was mapped to quiescent type I neural stem cells in the adult telencephalic stem cell niche. Gain and loss of id1 function in vivo demonstrated that Id1 promotes stem cell quiescence. The increased id1 expression observed in neural stem cells in response to injury appeared independent of inflammatory signals, suggesting multiple antagonistic pathways in the regulation of reactive neurogenesis. Together, we propose that Id1 acts to maintain the neural stem cell pool by counteracting neurogenesis-promoting signals.


Subject(s)
Brain/cytology , Inhibitor of Differentiation Protein 2/physiology , Neurogenesis/physiology , Neuroglia/cytology , Telencephalon/physiology , Zebrafish Proteins/physiology , Zebrafish/physiology , Animals , Brain/metabolism , Cell Proliferation/physiology , Inhibitor of Differentiation Protein 2/genetics , Inhibitor of Differentiation Protein 2/metabolism , Neuroglia/metabolism , Telencephalon/metabolism , Zebrafish/genetics , Zebrafish/metabolism , Zebrafish Proteins/genetics , Zebrafish Proteins/metabolism
9.
Cell Mol Life Sci ; 71(18): 3583-97, 2014 Sep.
Article in English | MEDLINE | ID: mdl-24573694

ABSTRACT

The inhibitor of differentiation Id2, a protein lacking the basic DNA-binding domain, is involved in the modulation of a number of biological processes. The molecular mechanisms explaining Id2 pleiotropic functions are poorly understood. Id2 and E2F4 are known to bind simultaneously to c-myc promoter. To study whether Id2 plays a global role on transcriptional regulation, we performed in vivo genome-wide ChIP/chip experiments for Id2 and E2F4 in adult mouse liver. An Id2-containing complex was bound to a common sequence downstream from the TSS on a subset of 442 E2F4 target genes mainly related to cell development and chromatin structure. We found a positive correlation between Id2 protein levels and the expression of E2F4/Id2 targets in fetal and adult liver. Id2 protein stability increased in fetal liver by interaction with USP1 de-ubiquitinating enzyme, which was induced during development. In adult liver, USP1 and Id2 levels dramatically decreased. In differentiated liver tissue, when Id2 concentration was low, E2F4/Id2 was bound to the same region as paused Pol II and target genes remained transcriptionally inactive. Conversely, in fetal liver when Id2 levels were increased, Id2 and Pol II were released from gene promoters and target genes up-regulated. During liver regeneration after partial hepatectomy, we obtained the same results as in fetal liver. Our results suggest that Id2 might be part of a reversible development-related program involved in the paused-ON/OFF state of Pol II on selected genes that would remain responsive to specific stimuli.


Subject(s)
E2F4 Transcription Factor/metabolism , Gene Expression Regulation, Developmental , Inhibitor of Differentiation Protein 2/metabolism , Liver/metabolism , Animals , E2F4 Transcription Factor/physiology , Inhibitor of Differentiation Protein 2/physiology , Liver Regeneration/genetics , Mice , RNA Polymerase II/metabolism , RNA Polymerase II/physiology
10.
Cancer Res ; 74(6): 1822-32, 2014 Mar 15.
Article in English | MEDLINE | ID: mdl-24425046

ABSTRACT

Maturation defects occurring in adult tissue progenitor cells have the potential to contribute to tumor development; however, there is little experimental evidence implicating this cellular mechanism in the pathogenesis of solid tumors. Inhibitor of DNA-binding 2 (Id2) is a transcription factor known to regulate the proliferation and differentiation of primitive stem and progenitor cells. Id2 is derepressed in adult tissue neural stem cells (NSC) lacking the tumor suppressor Tp53 and modulates their proliferation. Constitutive expression of Id2 in differentiating NSCs resulted in maturation-resistant oligodendroglial precursor cells (OPC), a cell population implicated in the initiation of glioma. Mechanistically, Id2 overexpression was associated with inhibition of the Notch effector Hey1, a bHLH transcription factor that we here characterize as a direct transcriptional repressor of the oligodendroglial lineage determinant Olig2. Orthotopic inoculation of NSCs with enhanced Id2 expression into brains of mice engineered to express platelet-derived growth factor in the central nervous system resulted in glioma. These data implicate a mechanism of altered NSC differentiation in glioma development and characterize a novel mouse model that reflects key characteristics of the recently described proneural subtype of glioblastoma multiforme. Such findings support the emerging concept that the cellular and molecular characteristics of tumor cells are linked to the transformation of distinct subsets of adult tissue progenitors.


Subject(s)
Carcinogenesis/metabolism , Inhibitor of Differentiation Protein 2/physiology , Neural Stem Cells/physiology , Oligodendroglia/physiology , Proto-Oncogene Proteins c-sis/physiology , Animals , Basic Helix-Loop-Helix Transcription Factors/genetics , Basic Helix-Loop-Helix Transcription Factors/metabolism , Brain Neoplasms/metabolism , Brain Neoplasms/pathology , Cell Cycle Proteins/metabolism , Cell Differentiation , Cell Proliferation , Cells, Cultured , Gene Expression , Gene Expression Regulation, Neoplastic , Glioma/metabolism , Glioma/pathology , Humans , Mice , Mice, Inbred C57BL , Mice, Knockout , Nerve Tissue Proteins/genetics , Nerve Tissue Proteins/metabolism , Neural Stem Cells/transplantation , Oligodendrocyte Transcription Factor 2 , Promoter Regions, Genetic , Receptor, Platelet-Derived Growth Factor alpha/metabolism , Tumor Microenvironment
11.
J Immunol ; 192(3): 1055-1063, 2014 Feb 01.
Article in English | MEDLINE | ID: mdl-24379125

ABSTRACT

The innate-like T cells expressing Vγ1.1 and Vδ6.3 represent a unique T cell lineage sharing features with both the γδ T and the invariant NKT cells. The population size of Vγ1.1(+)Vδ6.3(+) T cells is tightly controlled and usually contributes to a very small proportion of thymic output, but the underlying mechanism remains enigmatic. Deletion of Id3, an inhibitor of E protein transcription factors, can induce an expansion of the Vγ1.1(+)Vδ6.3(+) T cell population. This phenotype is much stronger on the C57BL/6 background than on the 129/sv background. Using quantitative trait linkage analysis, we identified Id2, a homolog of Id3, to be the major modifier of Id3 in limiting Vγ1.1(+)Vδ6.3(+) T cell expansion. The Vγ1.1(+)Vδ6.3(+) phenotype is attributed to an intrinsic weakness of Id2 transcription from Id2 C57BL/6 allele, leading to an overall reduced dosage of Id proteins. However, complete removal of both Id2 and Id3 genes in developing T cells suppressed the expansion of Vγ1.1(+)Vδ6.3(+) T cells because of decreased proliferation and increased cell death. We showed that conditional knockout of Id2 alone is sufficient to promote a moderate expansion of γδ T cells. These regulatory effects of Id2 and Id3 on Vγ1.1(+)Vδ6.3(+) T cells are mediated by titration of E protein activity, because removing one or more copies of E protein genes can restore Vγ1.1(+)Vδ6.3(+) T cell expansion in Id2 and Id3 double conditional knockout mice. Our data indicated that Id2 and Id3 collaboratively control survival and expansion of the γδ lineage through modulating a proper threshold of E proteins.


Subject(s)
Inhibitor of Differentiation Protein 2/physiology , Inhibitor of Differentiation Proteins/physiology , Receptors, Antigen, T-Cell, gamma-delta/analysis , T-Lymphocyte Subsets/immunology , Alleles , Animals , Basic Helix-Loop-Helix Transcription Factors/deficiency , Basic Helix-Loop-Helix Transcription Factors/genetics , Basic Helix-Loop-Helix Transcription Factors/physiology , Cell Lineage , Crosses, Genetic , Gene Rearrangement, delta-Chain T-Cell Antigen Receptor , Gene Rearrangement, gamma-Chain T-Cell Antigen Receptor , Inhibitor of Differentiation Protein 2/deficiency , Inhibitor of Differentiation Protein 2/genetics , Inhibitor of Differentiation Proteins/deficiency , Inhibitor of Differentiation Proteins/genetics , Lymphocyte Count , Mice , Mice, Inbred C57BL , Mice, Knockout , Specific Pathogen-Free Organisms , T-Lymphocyte Subsets/chemistry , T-Lymphocyte Subsets/cytology , Thymus Gland/cytology , Thymus Gland/immunology
12.
Carcinogenesis ; 35(4): 951-8, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24343358

ABSTRACT

The role for the inhibitors of differentiation (Ids) proteins in melanomagenesis has been poorly explored. In other cell types, Ids have been shown to contribute to cell proliferation, migration and angiogenesis and, along with a number of other genes, are direct downstream targets of the transforming growth factor (TGF)-ß pathway. Expression of Smad7, which suppress TGF-ß signaling, or synthetic TGF-ß inhibitors, was shown to potently suppress melanomagenesis. We found that endogenous Id2, Id3 and Id4 expression was elevated in 1205Lu versus 1205Lu cells constitutively expressing Smad7, indicating Ids may play a role in melanomagenesis. Therefore, the effects of Tet-inducible expression of Id2, Id3 or Id4 along with Smad7 in TGF-ß-dependent 1205Lu human melanoma cells were explored in vitro and in vivo. 1205Lu cells formed subcutaneous tumors in athymic mice, whereas cells expressing Smad7 failed to form tumors. However, 1205Lu cells expressing Smad7 along with doxycycline-induced Id2, Id3 or Id4 were able to overcome the potent tumorigenic block mediated by S7, to varying degrees. Conversely, Id small interfering RNA knockdown suppressed anchorage-independent growth of melanoma. Histology of tumors from 1205Lu cells expressing Smad7 + Id4 revealed an average of 31% necrosis, compared with 5.2% in tumors from 1205Lu with vector only. Downstream, Ids suppressed cyclin-dependent kinase inhibitors, and re-upregulated invasion and metastasis-related genes matrix metalloproteinase 2 (MMP2), MMP9, CXCR4 and osteopontin, shown previously to be downregulated in response to Smad7. This study shows that Id2, Id3 and Id4 are each able to overcome TGF-ß dependence, and establish a role for Ids as key mediators of TGF-ß melanomagenesis.


Subject(s)
Inhibitor of Differentiation Protein 2/physiology , Inhibitor of Differentiation Proteins/physiology , Melanoma/physiopathology , Neoplasm Proteins/physiology , Smad7 Protein/physiology , Transforming Growth Factor beta/physiology , Base Sequence , Cell Line, Tumor , Cell Proliferation , DNA Primers , Humans , Melanoma/pathology , Neoplasm Metastasis , Reverse Transcriptase Polymerase Chain Reaction , Up-Regulation
13.
J Immunol ; 191(12): 5993-6001, 2013 Dec 15.
Article in English | MEDLINE | ID: mdl-24227775

ABSTRACT

Dendritic cells (DCs) are heterogeneous cell populations represented by different subtypes, each varying in terms of gene expression patterns and specific functions. Recent studies identified transcription factors essential for the development of different DC subtypes, yet molecular mechanisms for the developmental program and functions remain poorly understood. In this study, we developed and characterized a mouse DC progenitor-like cell line, designated DC9, from Irf8(-/-) bone marrow cells as a model for DC development and function. Expression of Irf8 in DC9 cells led to plasmacytoid DCs and CD8α(+) DC-like cells, with a concomitant increase in plasmacytoid DC- and CD8α(+) DC-specific gene transcripts and induction of type I IFNs and IL12p40 following TLR ligand stimulation. Irf8 expression in DC9 cells led to an increase in Id2 and Batf3 transcript levels, transcription factors shown to be important for the development of CD8α(+) DCs. We show that, without Irf8, expression of Id2 and Batf3 was not sufficient for directing classical CD8α(+) DC development. When coexpressed with Irf8, Batf3 and Id2 had a synergistic effect on classical CD8α(+) DC development. We demonstrate that Irf8 is upstream of Batf3 and Id2 in the classical CD8α(+) DC developmental program and define the hierarchical relationship of transcription factors important for classical CD8α(+) DC development.


Subject(s)
Basic-Leucine Zipper Transcription Factors/physiology , Dendritic Cells/cytology , Gene Expression Regulation/immunology , Inhibitor of Differentiation Protein 2/physiology , Interferon Regulatory Factors/physiology , Repressor Proteins/physiology , Animals , Basic-Leucine Zipper Transcription Factors/biosynthesis , Basic-Leucine Zipper Transcription Factors/genetics , CD8 Antigens/analysis , Cell Differentiation/drug effects , Cell Line , Dendrites/ultrastructure , Dendritic Cells/chemistry , Dendritic Cells/classification , Dendritic Cells/ultrastructure , Hematopoietic Stem Cells/cytology , Inhibitor of Differentiation Protein 2/biosynthesis , Inhibitor of Differentiation Protein 2/genetics , Interferon Regulatory Factors/biosynthesis , Interferon Regulatory Factors/genetics , Interferon-alpha/biosynthesis , Interferon-alpha/genetics , Interleukin-12 Subunit p40/biosynthesis , Interleukin-12 Subunit p40/genetics , Membrane Proteins/pharmacology , Mice , RNA, Messenger/biosynthesis , RNA, Messenger/genetics , Recombinant Fusion Proteins/metabolism , Repressor Proteins/biosynthesis , Repressor Proteins/genetics , Transduction, Genetic
14.
J Immunol ; 191(12): 5973-83, 2013 Dec 15.
Article in English | MEDLINE | ID: mdl-24244015

ABSTRACT

Invariant NKT (iNKT) cells display characteristics of both adaptive and innate lymphoid cells (ILCs). Like other ILCs, iNKT cells constitutively express ID proteins, which antagonize the E protein transcription factors that are essential for adaptive lymphocyte development. However, unlike ILCs, ID2 is not essential for thymic iNKT cell development. In this study, we demonstrated that ID2 and ID3 redundantly promoted iNKT cell lineage specification involving the induction of the signature transcription factor PLZF and that ID3 was critical for development of TBET-dependent NKT1 cells. In contrast, both ID2 and ID3 limited iNKT cell numbers by enforcing the postselection checkpoint in conventional thymocytes. Therefore, iNKT cells show both adaptive and innate-like requirements for ID proteins at distinct checkpoints during iNKT cell development.


Subject(s)
Clonal Selection, Antigen-Mediated , Inhibitor of Differentiation Protein 2/physiology , Inhibitor of Differentiation Proteins/physiology , Lymphopoiesis/physiology , Natural Killer T-Cells/cytology , T-Lymphocyte Subsets/cytology , Adoptive Transfer , Animals , Antigens, Differentiation, T-Lymphocyte/biosynthesis , Antigens, Differentiation, T-Lymphocyte/genetics , Cells, Cultured , Gene Rearrangement, alpha-Chain T-Cell Antigen Receptor , Immunoglobulin Joining Region/genetics , Immunoglobulin Variable Region/genetics , Inhibitor of Differentiation Protein 2/genetics , Inhibitor of Differentiation Proteins/deficiency , Interferon-gamma/biosynthesis , Interleukin-4/biosynthesis , Kruppel-Like Transcription Factors/biosynthesis , Kruppel-Like Transcription Factors/genetics , Lymphocyte Count , Mice , Mice, Knockout , Natural Killer T-Cells/metabolism , Promyelocytic Leukemia Zinc Finger Protein , Radiation Chimera , T-Box Domain Proteins/biosynthesis , T-Box Domain Proteins/deficiency , T-Box Domain Proteins/genetics , T-Lymphocyte Subsets/metabolism , Thymus Gland/cytology , Thymus Gland/growth & development
15.
Blood ; 121(9): 1574-83, 2013 Feb 28.
Article in English | MEDLINE | ID: mdl-23297132

ABSTRACT

Antiviral immunity and cross-presentation is mediated constitutively through CD8α+ and CD103+ DCs. Development of these DC subsets is thought to require the transcription factors Irf8, Id2, Nfil3, and Batf3, although how this network is regulated is poorly defined. We addressed the nature of the differentiation blocks observed in the absence of these factors and found that although all 4 factors are required for CD103+ DC development, only Irf8 is essential for CD8α+ DCs. CD8α+ DCs emerged in the absence of Id2, Nfil3 and Batf3 in short-term bone marrow reconstitution. These "induced" CD8α+ DCs exhibit several hallmarks of classic CD8α+ DCs including the expression of CD24, Tlr3, Xcr1, Clec9A, and the capacity to cross-present soluble, cell-associated antigens and viral antigens even in the absence of Batf3. Collectively, these results uncover a previously undescribed pathway by which CD8α+ DCs emerge independent of Id2, Nfil3, and Batf3, but dependent on Irf8.


Subject(s)
Basic-Leucine Zipper Transcription Factors/physiology , CD8 Antigens/metabolism , Cell Differentiation , Dendritic Cells/physiology , Inhibitor of Differentiation Protein 2/physiology , Repressor Proteins/physiology , Animals , Antigens, Viral/immunology , Basic-Leucine Zipper Transcription Factors/genetics , Basic-Leucine Zipper Transcription Factors/metabolism , Cell Differentiation/genetics , Cell Differentiation/immunology , Cell Survival/genetics , Cell Survival/immunology , Cells, Cultured , Cross-Priming/genetics , Cross-Priming/immunology , Cross-Priming/physiology , Dendritic Cells/immunology , Dendritic Cells/metabolism , Herpesvirus 1, Human/immunology , Inhibitor of Differentiation Protein 2/genetics , Inhibitor of Differentiation Protein 2/metabolism , Interferon Regulatory Factors/genetics , Interferon Regulatory Factors/metabolism , Interferon Regulatory Factors/physiology , Mice , Mice, Inbred C57BL , Mice, Transgenic , Repressor Proteins/genetics , Repressor Proteins/metabolism , Transcription Factors/genetics , Transcription Factors/metabolism , Transcription Factors/physiology
16.
J Immunol ; 190(4): 1501-9, 2013 Feb 15.
Article in English | MEDLINE | ID: mdl-23325888

ABSTRACT

CD8(+) T cells play a crucial role in the clearance of intracellular pathogens through the generation of cytotoxic effector cells that eliminate infected cells and long-lived memory cells that provide enhanced protection against reinfection. We have previously shown that the inhibitor of E protein transcription factors, Id2, is necessary for accumulation of effector and memory CD8(+) T cells during infection. In this study, we show that CD8(+) T cells lacking Id2 did not generate a robust terminally differentiated killer cell lectin-like receptor G1 (KLRG1)(hi) effector population, but displayed a cell-surface phenotype and cytokine profile consistent with memory precursors, raising the question as to whether loss of Id2 impairs the differentiation and/or survival of effector memory cells. We found that deletion of Bim rescued Id2-deficient CD8(+) cell survival during infection. However, the dramatic reduction in KLRG1(hi) cells caused by loss of Id2 remained in the absence of Bim, such that Id2/Bim double-deficient cells form an exclusively KLRG1(lo)CD127(hi) memory precursor population. Thus, we describe a role for Id2 in both the survival and differentiation of normal CD8(+) effector and memory populations.


Subject(s)
CD8-Positive T-Lymphocytes/immunology , Inhibitor of Differentiation Protein 2/physiology , Receptors, Immunologic/biosynthesis , Adoptive Transfer , Animals , CD8-Positive T-Lymphocytes/microbiology , CD8-Positive T-Lymphocytes/virology , Cell Survival/genetics , Cell Survival/immunology , Cytokines/biosynthesis , Immunologic Memory/genetics , Immunophenotyping , Inhibitor of Differentiation Protein 2/deficiency , Inhibitor of Differentiation Protein 2/genetics , Interleukin-7 Receptor alpha Subunit/biosynthesis , Lectins, C-Type , Mice , Mice, Inbred C57BL , Mice, Knockout , Mice, Transgenic , Stem Cells/immunology , Stem Cells/microbiology , Stem Cells/virology , bcl-X Protein/deficiency , bcl-X Protein/genetics
17.
Blood ; 120(15): 3001-6, 2012 Oct 11.
Article in English | MEDLINE | ID: mdl-22936665

ABSTRACT

Hypoxia-inducible factors (HIFs) regulate hematopoiesis in the embryo and maintain hematopoietic stem cell function in the adult. How hypoxia and HIFs contribute to hematopoietic lineage differentiation in the adult is ill defined. Here we provide evidence that HIF-1 limits differentiation of precursors into plasmacytoid dendritic cells (pDCs). Low oxygen up-regulated inhibitor of DNA binding 2 (ID2) and suppressed Flt3-L-induced differentiation of bone marrow cells to pDCs in wild-type but not HIF-1α(fl/fl) LysM-Cre bone marrow cells. Moreover, pDC differentiated normally in hypoxic ID2(-/-) bone marrow cultures. Finally, we observed elevated pDC frequencies in bone marrow, blood, and spleen of HIF-1α(fl/fl) LysM-Cre and ID2(-/-), but not HIF-2α(fl/fl) LysM-Cre mice. Our data indicate that the low oxygen content in the bone marrow might limit pDC development. This might be an environmental mechanism to restrict the numbers of these potentially autoreactive cells.


Subject(s)
Bone Marrow/pathology , Cell Hypoxia , Dendritic Cells/pathology , Hematopoietic Stem Cells/pathology , Hematopoietic System/pathology , Hypoxia-Inducible Factor 1, alpha Subunit/physiology , Oxygen/metabolism , Animals , Basic Helix-Loop-Helix Transcription Factors/physiology , Cell Proliferation , Dendritic Cells/metabolism , Enzyme-Linked Immunosorbent Assay , Female , Flow Cytometry , Hematopoietic Stem Cells/metabolism , Humans , In Vitro Techniques , Inhibitor of Differentiation Protein 2/physiology , Integrases/metabolism , Male , Mice , Mice, Inbred C57BL , Mice, Knockout , RNA, Messenger/genetics , Real-Time Polymerase Chain Reaction
18.
J Immunol ; 189(3): 1400-5, 2012 Aug 01.
Article in English | MEDLINE | ID: mdl-22745378

ABSTRACT

An effective immune response to Ag challenge is critically dependent on the size of the effector cell population generated from clonal activation of Ag-specific T cells. The transcription network involved in regulating the size of the effector population, particularly for CD4 Th cells, is poorly understood. In this study, we investigate the role of Id2, an inhibitor of E protein transcription factors, in the generation of CD4 effectors. Using a T cell-specific conditional Id2 knockout mouse model, we show that inhibitor of DNA binding (Id)2 is essential for the development of experimental autoimmune encephalomyelitis. Although Ag-specific and IL-17-producing CD4 T cells are produced in these mice, the activated CD4 T cells form a smaller pool of effector cells in the peripheral lymphoid organs, exhibit reduced proliferation and increased cell death, and are largely absent in the CNS. In the absence of Id2, E protein targets, including the proapoptotic protein Bim and SOCS3, are expressed at higher levels among activated CD4 T cells. This study reveals a critical role of Id2 in the control of effector CD4 T cell population size and the development of a Th17-mediated autoimmune disease.


Subject(s)
CD4-Positive T-Lymphocytes/immunology , Encephalomyelitis, Autoimmune, Experimental/immunology , Inhibitor of Differentiation Protein 2/physiology , Transcription, Genetic/immunology , Amino Acid Sequence , Animals , CD4-Positive T-Lymphocytes/metabolism , CD4-Positive T-Lymphocytes/pathology , Cell Differentiation/genetics , Cell Differentiation/immunology , Cells, Cultured , Disease Models, Animal , Encephalomyelitis, Autoimmune, Experimental/genetics , Encephalomyelitis, Autoimmune, Experimental/pathology , Gene Knock-In Techniques , Humans , Inhibitor of Differentiation Protein 2/biosynthesis , Inhibitor of Differentiation Protein 2/deficiency , Lymphocyte Activation/genetics , Lymphocyte Activation/immunology , Male , Mice , Mice, Transgenic , Molecular Sequence Data , Resting Phase, Cell Cycle/genetics , Resting Phase, Cell Cycle/immunology , Th17 Cells/immunology , Th17 Cells/metabolism , Th17 Cells/pathology
19.
J Exp Med ; 209(4): 729-40, 2012 Apr 09.
Article in English | MEDLINE | ID: mdl-22430492

ABSTRACT

Lymphoid tissue development is initiated during embryogenesis by the migration of lymphoid tissue inducer (LTi) cells from the fetal liver to the periphery, where they induce the formation of lymph nodes and Peyer's patches. In the fetal liver, a subset of common lymphoid progenitors (CLPs) that expresses the integrin α4ß7 gives rise to LTi cells, a process strictly dependent on the expression of the transcriptional repressor Id2 and the nuclear hormone receptor retinoic acid-related orphan receptor γ t (RORγt). In this study, we show that Id2 and RORγt are sequentially up-regulated during LTi cell development, matching two waves of differentiation with opposite requirements for Notch signaling. Both the expression of Id2 and Notch are required for the generation of α4ß7(+) RORγt(-) fetal progenitors, but Notch subsequently blocks progression to the RORγt(+) stage and final maturation of LTi cells. Notch is therefore a necessary switch to engage the LTi developmental pathway, but needs to be turned off later to avoid diversion to the T cell fate.


Subject(s)
Inhibitor of Differentiation Protein 2/physiology , Lymphoid Tissue/embryology , Nuclear Receptor Subfamily 1, Group F, Member 3/physiology , Receptors, Notch/physiology , Animals , Cell Differentiation , Cells, Cultured , Integrins/physiology , Mice , Mice, Inbred C57BL , Signal Transduction
20.
J Neurosci Res ; 90(5): 925-32, 2012 May.
Article in English | MEDLINE | ID: mdl-22253220

ABSTRACT

Remyelination of the central nervous system in multiple sclerosis patients is often incomplete. Remyelination depends on normal oligodendrogenesis and the differentiation of oligodendrocyte precursor cells (OPC) into mature oligodendrocytes (OL). Inhibitor of DNA binding (ID), a transcription factor, is thought to inhibit oligodendrogenesis and the differentiation of OPC. This Mini-Review aims to reveal the roles of and mechanisms used by IDs (mainly ID2) in this process. An interaction between ID2 and retinoblastoma tumor suppressor is responsible for the cell cycle transition from G1 to S. The translocation of ID2 between the nucleus and cytoplasm is regulated by E47 and OLIG. An interaction between ID2 and OLIG mediates the inhibitory effects of bone morphogenic proteins and G protein-coupled receptor 17 on oligodendroglia differentiation. ID2 expression is regulated by Wnt and histone deacetylases during the differentiation of OPC. ID4, another member of the ID family, functions similarly to ID2 in regulating the differentiation of OPC. The main difference is that ID4 is essential for oligodendrogenesis, whereas ID2 is nonessential. This could have important implications for demyelinating diseases, and interfering with these pathways might represent a viable therapeutic approach for these diseases.


Subject(s)
Cell Differentiation/physiology , Inhibitor of Differentiation Protein 2/physiology , Oligodendroglia/metabolism , Animals , Bone Morphogenetic Proteins/metabolism , Cell Cycle/physiology , Cell Proliferation , Demyelinating Diseases/genetics , Demyelinating Diseases/metabolism , Demyelinating Diseases/pathology , Gene Expression Regulation/physiology , Humans , Nerve Tissue Proteins/genetics , Nerve Tissue Proteins/metabolism , Protein Transport , Receptors, G-Protein-Coupled/genetics , Receptors, G-Protein-Coupled/metabolism , Signal Transduction
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