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1.
Lipids ; 53(3): 353-360, 2018 03.
Article in English | MEDLINE | ID: mdl-29668081

ABSTRACT

Lipocalin-type prostaglandin D synthase (L-PGDS; EC:5.3.99.2) is an enzyme with dual functional roles as a prostaglandin D2 -synthesizing enzyme and as an extracellular transporter for diverse lipophilic compounds in the cerebrospinal fluid (CSF). Transport of hydrophobic endocannabinoids is mediated by serum albumin in the blood and intracellularly by the fatty acid binding proteins, but no analogous transport mechanism has yet been described in CSF. L-PGDS has been reported to promiscuously bind a wide variety of lipophilic ligands and is among the most abundant proteins found in the CSF. Here, we examine the binding of several classes of endogenous and synthetic ligands to L-PGDS. Endocannabinoids exhibited low affinity toward L-PGDS, while cannabinoid metabolites and synthetic cannabinoids displayed higher affinities for L-PGDS. These results indicate that L-PGDS is unlikely to function as a carrier for endocannabinoids in the CSF, but it may bind and transport a subset of cannabinoids.


Subject(s)
Cannabinoids/metabolism , Intramolecular Oxidoreductases/metabolism , Lipocalins/metabolism , Prostaglandins/metabolism , Tryptophan/chemistry , Brain/enzymology , Brain Chemistry , Cannabinoids/chemistry , Cloning, Molecular , Dansyl Compounds/chemistry , Dansyl Compounds/metabolism , Escherichia coli/genetics , Escherichia coli/metabolism , Fatty Acids/chemistry , Fatty Acids/metabolism , Gene Expression , Gene Library , Genetic Vectors/chemistry , Genetic Vectors/metabolism , Humans , Intramolecular Oxidoreductases/genetics , Intramolecular Oxidoreductases/isolation & purification , Kinetics , Lipocalins/genetics , Lipocalins/isolation & purification , Nitrobenzenes/chemistry , Nitrobenzenes/metabolism , Oxadiazoles/chemistry , Oxadiazoles/metabolism , Prostaglandins/chemistry , Protein Binding , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Solutions , Spectrometry, Fluorescence
2.
Protein Expr Purif ; 148: 46-53, 2018 08.
Article in English | MEDLINE | ID: mdl-29601965

ABSTRACT

The HLA class II histocompatibility antigen gamma chain, also known as HLA-DR antigen-associated invariant chain or CD74, has been shown to be involved in many biological processes amongst which antigen loading and transport of MHC class II molecules from the endoplasmic reticulum to the Golgi complex. It is also part of a receptor complex for macrophage migration inhibitory factor (MIF), and participates in inflammatory signaling. The inhibition of MIF-CD74 complex formation is regarded as a potentially attractive therapeutic target in inflammation, cancer and immune diseases. In order to be able to produce large quantities of the extracellular moiety of human CD74, which has been reported to be unstable and protease-sensitive, different constructs were made as fusions with two solubility enhancers: the well-known maltose-binding domain and Fh8, a small protein secreted by the parasite Fasciola hepatica. The fusion proteins could be purified with high yields from Escherichia coli and were demonstrated to be active in binding to MIF. Moreover, our results strongly suggest that the MIF binding site is located in the sequence between the transmembrane and the membrane-distal trimerisation domain of CD74, and comprises at least amino acids 113-125 of CD74.


Subject(s)
Antigens, Differentiation, B-Lymphocyte/isolation & purification , Histocompatibility Antigens Class II/isolation & purification , Intramolecular Oxidoreductases/isolation & purification , Macrophage Migration-Inhibitory Factors/isolation & purification , Peptides/chemistry , Amino Acids/genetics , Animals , Antigens, Differentiation, B-Lymphocyte/chemistry , Antigens, Differentiation, B-Lymphocyte/genetics , Endoplasmic Reticulum/genetics , Escherichia coli/genetics , Fasciola hepatica/chemistry , Golgi Apparatus/genetics , HLA-DR Antigens/chemistry , HLA-DR Antigens/genetics , Histocompatibility Antigens Class II/chemistry , Histocompatibility Antigens Class II/genetics , Humans , Intramolecular Oxidoreductases/chemistry , Intramolecular Oxidoreductases/genetics , Macrophage Migration-Inhibitory Factors/chemistry , Macrophage Migration-Inhibitory Factors/genetics , Peptides/genetics , Protein Binding , Solubility
3.
J Phys Chem B ; 121(50): 11229-11240, 2017 12 21.
Article in English | MEDLINE | ID: mdl-29168638

ABSTRACT

A combination of molecular dynamics (MD) simulations and X-ray scattering (SAXS) has emerged as the approach of choice for studying protein structures and dynamics in solution. This approach has potential applications for membrane proteins that neither are soluble nor form crystals easily. We explore the water-coupled dynamic structures of thromboxane synthase (TXAS) and prostacyclin synthase (PGIS) from scanning HPLC-SAXS measurements combined with MD ensemble analyses. Both proteins are heme-containing enzymes in the cytochrome P450 family, known as prostaglandin H2 (PGH2) isomerase, with counter-functions in regulation of platelet aggregation. Currently, the X-ray crystallographic structures of PGIS are available, but those for TXAS are not. The use of homology modeling of the TXAS structure with ns-µs explicit water solvation MD simulations allows much more accurate estimation of the configuration space with loop motion and origin of the protein behaviors in solution. In contrast to the stability of the conserved PGIS structure in solution, the pronounced TXAS flexibility has been revealed to have unstructured loop regions in connection with the characteristic P450 structural elements. The MD-derived and experimental-solution SAXS results are in excellent agreement. The significant protein internal motions, whole-molecule structures, and potential problems with protein folding, crystallization, and functionality are examined.


Subject(s)
Cytochrome P-450 Enzyme System/chemistry , Intramolecular Oxidoreductases/chemistry , Molecular Dynamics Simulation , Scattering, Small Angle , Thromboxanes/chemistry , X-Ray Diffraction , Cytochrome P-450 Enzyme System/isolation & purification , Cytochrome P-450 Enzyme System/metabolism , Intramolecular Oxidoreductases/isolation & purification , Intramolecular Oxidoreductases/metabolism , Molecular Conformation , Solutions
4.
Arch Biochem Biophys ; 625-626: 24-29, 2017 07 01.
Article in English | MEDLINE | ID: mdl-28502466

ABSTRACT

Plants and fungi form jasmonic acid from α-linolenic acid. The first two steps of biosynthesis in plants occur by sequential transformation by 13S-lipoxygenase and allene oxide synthase (AOS). The biosynthesis in fungi may follow this classical scheme, but the only fungal AOS discovered so far are cytochromes P450 (CYP) fused to 8- and 9-dioxygenases (DOX). In the present report, we purified recombinant 9S-DOX-AOS of Fusarium oxysporum from cell lysate by cobalt affinity chromatography to near homogeneity and studied key residues by site-directed mutagenesis. Sequence homology with 8R-DOX-linoleate diol synthases (8R-DOX-LDS) suggested that Tyr414 catalyzes hydrogen abstraction and that Cys1051 forms the heme thiolate ligand. Site-directed mutagenesis (Tyr414Phe; Cys1051Ser) led to loss of 9S-DOX and 9S-AOS activities, respectively, but other important residues in the CYP parts of 5,8- and 7,8-LDS or 9R-AOS were not conserved. The UV-visible spectrum of 9S-DOX-AOS showed a Soret band at 409 nm, which shifted to 413 nm in the Cys1051Ser mutant. The 9S-AOS of the Tyr414Phe mutant transformed 9S-hydroperoxides of α-linolenic and linoleic acids to allene oxides/α-ketols, but it did not transform 13-hydroperoxides. We conclude that 9S- and 8R-DOX catalyze hydrogen abstraction at C-11 and C-8, respectively, by homologous Tyr residues.


Subject(s)
Fusarium/enzymology , Intramolecular Oxidoreductases/genetics , Intramolecular Oxidoreductases/metabolism , Amino Acid Sequence , Chromatography, Affinity , Chromatography, Liquid , Cobalt/chemistry , Cyclopentanes/metabolism , Fusarium/chemistry , Fusarium/genetics , Fusarium/metabolism , Hydrogen Peroxide/metabolism , Intramolecular Oxidoreductases/chemistry , Intramolecular Oxidoreductases/isolation & purification , Linoleic Acid/metabolism , Models, Molecular , Mutagenesis, Site-Directed , Oxylipins/metabolism
5.
Acta Crystallogr F Struct Biol Commun ; 72(Pt 1): 36-41, 2016 Jan.
Article in English | MEDLINE | ID: mdl-26750482

ABSTRACT

Pectin is found in the cell wall of plants and is often discarded as waste. A number of research groups are interested in redirecting this biomass waste stream for the production of fuel and bulk chemicals. The primary monomeric subunit of this polysaccharide is D-galacturonate, a six-carbon acid sugar that is degraded in a five-step pathway to central metabolic intermediates by some bacteria, including Agrobacterium tumefaciens. In the third step of the pathway, D-galactaro-1,4-lactone is converted to 2-keto-3-deoxy-L-threo-hexarate by a member of the mandelate racemase subgroup of the enolase superfamily with a novel activity for the superfamily. The 1.6 Šresolution structure of this enzyme was determined, revealing an overall modified (ß/α)7ß TIM-barrel domain, a hallmark of the superfamily. D-Galactaro-1,4-lactone was manually docked into the active site located at the interface between the N-terminal lid domain and the C-terminal barrel domain. On the basis of the position of the lactone in the active site, Lys166 is predicted to be the active-site base responsible for abstraction of the α proton. His296 on the opposite side of the active site is predicted to be the general acid that donates a proton to the ß carbon as the lactone ring opens. The lactone ring appears to be oriented within the active site by stacking interactions with Trp298.


Subject(s)
Agrobacterium tumefaciens/enzymology , Bacterial Proteins/chemistry , Intramolecular Oxidoreductases/chemistry , Bacterial Proteins/isolation & purification , Calcium/chemistry , Catalytic Domain , Crystallization , Crystallography, X-Ray , Intramolecular Oxidoreductases/isolation & purification , Models, Molecular , Pectins/chemistry , Protein Binding , Protein Structure, Quaternary , Proteolysis
6.
J Biotechnol ; 211: 68-76, 2015 Oct 10.
Article in English | MEDLINE | ID: mdl-26197418

ABSTRACT

Δ(9)-Tetrahydrocannabinol (THC) is of increasing interest as a pharmaceutical and bioactive compound. Chemical synthesis of THC uses a laborious procedure and does not satisfy the market demand. The implementation of biocatalysts for specific synthesis steps might be beneficial for making natural product availability independent from the plant. Δ(9)-Tetrahydrocannabinolic acid synthase (THCAS) from C. sativa L. catalyzes the cyclization of cannabigerolic acid (CBGA) to Δ(9)-tetrahydrocannabinolic acid (THCA), which is non-enzymatically decarboxylated to THC. We report the preparation of THCAS in amounts sufficient for the biocatalytic production of THC(A). Active THCAS was most efficiently obtained from Pichia pastoris. THCAS was produced on a 2L bioreactor scale and the enzyme was isolated by single-step chromatography with a specific activity of 73Ug(-1)total protein. An organic/aqueous two-liquid phase setup for continuous substrate delivery facilitated in situ product removal. In addition, THCAS activity in aqueous environments lasted for only 20min whereas the presence of hexane stabilized the activity over 3h. In conclusion, production of THCAS in P. pastoris Mut(S) KM71 KE1, subsequent isolation, and its application in a two-liquid phase setup enables the synthesis of THCA on a mg scale.


Subject(s)
Cannabinoids/chemical synthesis , Dronabinol/analogs & derivatives , Intramolecular Oxidoreductases/metabolism , Pichia/metabolism , Batch Cell Culture Techniques , Benzoates/metabolism , Biocatalysis , Biomass , Bioreactors/microbiology , Dronabinol/metabolism , Electrophoresis, Polyacrylamide Gel , Fermentation , Intramolecular Oxidoreductases/isolation & purification , Substrate Specificity
7.
Plant Physiol ; 160(3): 1251-66, 2012 Nov.
Article in English | MEDLINE | ID: mdl-22987885

ABSTRACT

In plants, oxylipins regulate developmental processes and defense responses. The first specific step in the biosynthesis of the cyclopentanone class of oxylipins is catalyzed by allene oxide cyclase (AOC) that forms cis(+)-12-oxo-phytodienoic acid. The moss Physcomitrella patens has two AOCs (PpAOC1 and PpAOC2) with different substrate specificities for C18- and C20-derived substrates, respectively. To better understand AOC's catalytic mechanism and to elucidate the structural properties that explain the differences in substrate specificity, we solved and analyzed the crystal structures of 36 monomers of both apo and ligand complexes of PpAOC1 and PpAOC2. From these data, we propose the following intermediates in AOC catalysis: (1) a resting state of the apo enzyme with a closed conformation, (2) a first shallow binding mode, followed by (3) a tight binding of the substrate accompanied by conformational changes in the binding pocket, and (4) initiation of the catalytic cycle by opening of the epoxide ring. As expected, the substrate dihydro analog cis-12,13S-epoxy-9Z,15Z-octadecadienoic acid did not cyclize in the presence of PpAOC1; however, when bound to the enzyme, it underwent isomerization into the corresponding trans-epoxide. By comparing complex structures of the C18 substrate analog with in silico modeling of the C20 substrate analog bound to the enzyme allowed us to identify three major molecular determinants responsible for the different substrate specificities (i.e. larger active site diameter, an elongated cavity of PpAOC2, and two nonidentical residues at the entrance of the active site).


Subject(s)
Bryopsida/enzymology , Intramolecular Oxidoreductases/chemistry , Intramolecular Oxidoreductases/metabolism , Biocatalysis , Biosynthetic Pathways , Catalytic Domain , Crystallography, X-Ray , Cyclopentanes/chemistry , Cyclopentanes/metabolism , Fatty Acids, Unsaturated/chemistry , Fatty Acids, Unsaturated/metabolism , Intramolecular Oxidoreductases/isolation & purification , Isoenzymes/chemistry , Isoenzymes/metabolism , Isomerism , Models, Molecular , Oxylipins/chemistry , Oxylipins/metabolism , Protein Structure, Secondary , Substrate Specificity
8.
Proc Natl Acad Sci U S A ; 108(34): E577-85, 2011 Aug 23.
Article in English | MEDLINE | ID: mdl-21817065

ABSTRACT

Macrophage migration inhibitory factor (MIF) is a pivotal regulator of the immune response. Neutralization or genetic deletion of MIF does not completely abrogate activation responses, however, and deletion of the MIF receptor, CD74, produces a more pronounced phenotype than MIF deficiency. We hypothesized that these observations may be explained by a second MIF-like ligand, and we considered a probable candidate to be the protein encoded by the homologous, D-dopachrome tautomerase (D-DT) gene. We show that recombinant D-DT protein binds CD74 with high affinity, leading to activation of ERK1/2 MAP kinase and downstream proinflammatory pathways. Circulating D-DT levels correlate with disease severity in sepsis or malignancy, and the specific immunoneutralization of D-DT protects mice from lethal endotoxemia by reducing the expression of downstream effector cytokines. These data indicate that D-DT is a MIF-like cytokine with an overlapping spectrum of activities that are important for our understanding of MIF-dependent physiology and pathology.


Subject(s)
Intramolecular Oxidoreductases/chemistry , Intramolecular Oxidoreductases/genetics , Macrophage Migration-Inhibitory Factors/chemistry , Macrophage Migration-Inhibitory Factors/metabolism , Sequence Homology, Amino Acid , Amino Acid Sequence , Animals , Antigens, Differentiation, B-Lymphocyte/metabolism , COP9 Signalosome Complex , Cell Movement/drug effects , Endotoxemia/pathology , Endotoxemia/prevention & control , Extracellular Signal-Regulated MAP Kinases/metabolism , Female , Genome/genetics , Glucocorticoids/pharmacology , Histocompatibility Antigens Class II/metabolism , Humans , Immunosuppression Therapy , Intracellular Signaling Peptides and Proteins/metabolism , Intracellular Space/metabolism , Intramolecular Oxidoreductases/blood , Intramolecular Oxidoreductases/isolation & purification , Lipopolysaccharides/pharmacology , Macrophage Migration-Inhibitory Factors/blood , Macrophages/cytology , Macrophages/drug effects , Macrophages/metabolism , Mice , Molecular Sequence Data , Neoplasm Invasiveness , Neutralization Tests , Peptide Hydrolases/metabolism , Phosphorylation/drug effects , Protein Binding/drug effects , Sepsis/blood , Sepsis/pathology , Up-Regulation/drug effects
9.
J Chromatogr B Analyt Technol Biomed Life Sci ; 878(28): 2760-4, 2010 Oct 15.
Article in English | MEDLINE | ID: mdl-20829124

ABSTRACT

Hsp90 is a ubiquitous molecular chaperone that plays a key role in the malignant development of hormone-dependent pathologies such as cancer. An important role for Hsp90 is to facilitate the stable binding of steroid hormones to their respective receptors enabling the ligand-based signal to be carried to the nucleus and ultimately resulting in the up-regulation of gene expression. Along with Hsp90, this dynamic and transient process also involves the recruitment of additional proteins and co-chaperones that add further stability to the mature receptor-chaperone complex. In the work presented here, we describe four new protocols for the bacterial over-expression and column chromatographic purification of the human p23, FKBP52, HOP and SGTα proteins. Each of these proteins plays a distinct role in the steroid hormone receptor regulatory cycle. Affinity, ion-exchange and size-exclusion techniques were used to produce target yields greater than 50mg/L of cultured media, with each purified sample reaching near absolute sample homogeneity. These results reveal a reliable system for the production of p23, FKBP52, HOP and SGTα substrate proteins for use in the investigation of the Hsp90-associated protein interactions of the steroid hormone receptor cycle.


Subject(s)
Carrier Proteins/isolation & purification , Chromatography, Liquid/methods , Heat-Shock Proteins/isolation & purification , Intramolecular Oxidoreductases/isolation & purification , Tacrolimus Binding Proteins/isolation & purification , Carrier Proteins/metabolism , Escherichia coli , HSP90 Heat-Shock Proteins/chemistry , Heat-Shock Proteins/metabolism , Humans , Intramolecular Oxidoreductases/metabolism , Linear Models , Molecular Chaperones , Prostaglandin-E Synthases , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Tacrolimus Binding Proteins/metabolism
10.
New Phytol ; 188(3): 740-9, 2010 Nov.
Article in English | MEDLINE | ID: mdl-20704658

ABSTRACT

• Two cDNAs encoding allene oxide cyclases (PpAOC1, PpAOC2), key enzymes in the formation of jasmonic acid (JA) and its precursor (9S,13S)-12-oxo-phytodienoic acid (cis-(+)-OPDA), were isolated from the moss Physcomitrella patens. • Recombinant PpAOC1 and PpAOC2 show substrate specificity against the allene oxide derived from 13-hydroperoxy linolenic acid (13-HPOTE); PpAOC2 also shows substrate specificity against the allene oxide derived from 12-hydroperoxy arachidonic acid (12-HPETE). • In protonema and gametophores the occurrence of cis-(+)-OPDA, but neither JA nor the isoleucine conjugate of JA nor that of cis-(+)-OPDA was detected. • Targeted knockout mutants for PpAOC1 and for PpAOC2 were generated, while double mutants could not be obtained. The ΔPpAOC1 and ΔPpAOC2 mutants showed reduced fertility, aberrant sporophyte morphology and interrupted sporogenesis.


Subject(s)
Bryopsida/genetics , Cyclopentanes/metabolism , Genes, Plant , Intramolecular Oxidoreductases/genetics , Oxylipins/metabolism , Plant Infertility/genetics , Arachidonic Acid/metabolism , Bryopsida/anatomy & histology , Bryopsida/physiology , DNA, Complementary/isolation & purification , Gene Knockout Techniques , Intramolecular Oxidoreductases/isolation & purification , Intramolecular Oxidoreductases/metabolism , Mutation , Recombinant Proteins , Substrate Specificity , alpha-Linolenic Acid/metabolism
11.
Protein J ; 29(3): 204-12, 2010 Apr.
Article in English | MEDLINE | ID: mdl-20386969

ABSTRACT

Dopachrome tautomerase (DCT) plays a critical role in lowering the oxidative stress resulting from melanogenesis. Levels of DCT are elevated in melanoma cell lines that are especially resistant to chemotherapy and radiation. DCT is processed as a melanoma antigen and is a potential target for immunotherapy. In order to establish a more complete understanding of the role that DCT may play in the etiology and treatment of melanoma skin cancer, isolation of highly pure and properly processed protein is necessary. Purification of native DCT has been problematic due to a hydrophobic transmembrane anchor and interactions with melanin. In this study, DCT was expressed, without its carboxy-terminal transmembrane region using an Sf9 insect cell protein expression system and its recombinant protein was purified by various chromatographic techniques. Analysis of DCT tryptic peptides by MALDI-TOF/TOF determined N-glycosylation as a primary post-translational modification. Our success in the expression of soluble mammalian DCT and the characterization of N-glycosylation sites is a useful reference toward the comprehensive understanding of the structure/function relationship of mammalian DCT.


Subject(s)
Antigens, Neoplasm/chemistry , Intramolecular Oxidoreductases/chemistry , Melanoma/enzymology , Recombinant Proteins/chemistry , Animals , Antigens, Neoplasm/genetics , Antigens, Neoplasm/isolation & purification , Antigens, Neoplasm/metabolism , Glycosylation , Intramolecular Oxidoreductases/genetics , Intramolecular Oxidoreductases/isolation & purification , Intramolecular Oxidoreductases/metabolism , Mice , Peptide Fragments/chemistry , Peptide Fragments/metabolism , Peptide-N4-(N-acetyl-beta-glucosaminyl) Asparagine Amidase/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Spodoptera/metabolism , Trypsin/metabolism
12.
J Biol Chem ; 284(20): 13755-13765, 2009 May 15.
Article in English | MEDLINE | ID: mdl-19289462

ABSTRACT

Linoleate (10R)-dioxygenase (10R-DOX) of Aspergillus fumigatus was cloned and expressed in insect cells. Recombinant 10R-DOX oxidized 18:2n-6 to (10R)-hydroperoxy-8(E),12(Z)-octadecadienoic acid (10R-HPODE; approximately 90%), (8R)-hydroperoxylinoleic acid (8R-HPODE; approximately 10%), and small amounts of 12S(13R)-epoxy-(10R)-hydroxy-(8E)-octadecenoic acid. We investigated the oxygenation of 18:2n-6 at C-10 and C-8 by site-directed mutagenesis of 10R-DOX and 7,8-linoleate diol synthase (7,8-LDS), which forms approximately 98% 8R-HPODE and approximately 2% 10R-HPODE. The 10R-DOX and 7,8-LDS sequences differ in homologous positions of the presumed dioxygenation sites (Leu-384/Val-330 and Val-388/Leu-334, respectively) and at the distal site of the heme (Leu-306/Val-256). Leu-384/Val-330 influenced oxygenation, as L384V and L384A of 10R-DOX elevated the biosynthesis of 8-HPODE to 22 and 54%, respectively, as measured by liquid chromatography-tandem mass spectrometry analysis. The stereospecificity was also decreased, as L384A formed the R and S isomers of 10-HPODE and 8-HPODE in a 3:2 ratio. Residues in this position also influenced oxygenation by 7,8-LDS, as its V330L mutant augmented the formation of 10R-HPODE 3-fold. Replacement of Val-388 in 10R-DOX with leucine and phenylalanine increased the formation of 8R-HPODE to 16 and 36%, respectively, whereas L334V of 7,8-LDS was inactive. Mutation of Leu-306 with valine or alanine had little influence on the epoxyalcohol synthase activity. Our results suggest that Leu-384 and Val-388 of 10R-DOX control oxygenation of 18:2n-6 at C-10 and C-8, respectively. The two homologous positions of prostaglandin H synthase-1, Val-349 and Ser-353, are also critical for the position and stereospecificity of the cyclooxygenase reaction.


Subject(s)
Aspergillus fumigatus/enzymology , Fungal Proteins/biosynthesis , Fungal Proteins/chemistry , Gene Expression , Intramolecular Oxidoreductases/biosynthesis , Intramolecular Oxidoreductases/chemistry , Ligases/biosynthesis , Ligases/chemistry , Valine/chemistry , Animals , Aspergillus fumigatus/genetics , Cell Line , Fungal Proteins/genetics , Fungal Proteins/isolation & purification , Insecta , Intramolecular Oxidoreductases/genetics , Intramolecular Oxidoreductases/isolation & purification , Leucine/chemistry , Leucine/genetics , Leucine/metabolism , Ligases/genetics , Ligases/isolation & purification , Linoleic Acid/chemistry , Linoleic Acid/genetics , Linoleic Acid/metabolism , Linoleic Acids/chemistry , Linoleic Acids/genetics , Linoleic Acids/metabolism , Mutagenesis, Site-Directed , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Valine/genetics , Valine/metabolism
13.
BMB Rep ; 41(11): 808-13, 2008 Nov 30.
Article in English | MEDLINE | ID: mdl-19017494

ABSTRACT

Human microsomal prostaglandin E synthase-1 (mPGES-1) is a membrane associated protein that catalyzes the conversion of prostaglandin H(2) (PGH(2)) into prostaglandin E(2) (PGE(2)). In this study, the expression of human mPGES-1 in E. coli was significantly enhanced by modifying the utility of specific codons and the recombinant mPGES-1 was efficiently purified to homogeneity. The K(m) and V(max) of the purified enzyme were determined and the trimeric state characterized by chemical cross-linking with glutaraldehyde. The purified mPGES-1 was used for the screening of a chemical library of bioactive or drug compounds to identify novel inhibitors, and oxacillin and dyphylline were identified as moderately inhibiting mPGES-1 with IC(50) values of 100 and 200 microM, respectively. As these compounds competitively inhibited the catalysis of PGH(2), their binding sites appeared to be located near the PGH2 binding pocket.


Subject(s)
Enzyme Inhibitors/isolation & purification , Escherichia coli/genetics , Intramolecular Oxidoreductases/genetics , Intramolecular Oxidoreductases/isolation & purification , Small Molecule Libraries/analysis , Binding, Competitive , Drug Evaluation, Preclinical , Dyphylline/pharmacokinetics , Enzyme Activation/drug effects , Escherichia coli/chemistry , Humans , Inhibitory Concentration 50 , Intramolecular Oxidoreductases/antagonists & inhibitors , Intramolecular Oxidoreductases/metabolism , Oxacillin/pharmacokinetics , Prostaglandin-E Synthases , Transformation, Bacterial
14.
Arch Biochem Biophys ; 480(1): 41-50, 2008 Dec 01.
Article in English | MEDLINE | ID: mdl-18835243

ABSTRACT

Recently, we reported that a novel hybrid enzyme (TriCat enzyme), engineered by linking human cyclooxygenase-2 (COX-2) with prostacyclin (PGI(2)) synthase (PGIS) together through a transmembrane domain, was able to directly integrate the triple catalytic (TripCat) functions of COX-2 and PGIS and effectively convert arachidonic acid (AA) into the vascular protector, PGI(2) [K.H. Ruan, H. Deng, S.P. So, Biochemistry 45 (2006) 14003-14011]. In order to confirm the important biological activity and evaluate its therapeutic potential, it is critical to characterize the properties of the enzyme using the purified protein. The TriCat enzyme cDNA was subcloned into a baculovirus vector and its protein was expressed in Sf-9 cells in large-scale with a high-yield ( approximately 4% of the total membrane protein), as confirmed by Western blot and protein staining. The Sf-9 cells' membrane fraction, rich in TriCat enzyme, exhibited strong TriCat functions (K(m)=3 microM and K(cat)=100 molecules/min) for the TriCat enzyme and was 3-folds faster in converting AA to PGI(2) than the combination of the individual COX-2 and PGIS. Another superiority of the TriCat enzyme is its dual effect on platelet aggregation: it completely inhibited platelet aggregation at the low concentration of 2 microg/ml and then displayed the ability to reverse the initially aggregated platelets to their non-aggregated state. Furthermore, multiple substrate-binding sites were confirmed in the single protein by high-resolution NMR spectroscopy, using partially purified TriCat enzyme. These studies have clearly demonstrated that the isolated TriCat enzyme protein functions in the selective biosynthesis of the vascular protector, PGI(2), and revealed its potential for anti-thrombosis therapeutics.


Subject(s)
Cyclooxygenase 2/genetics , Cyclooxygenase 2/metabolism , Cytochrome P-450 Enzyme System/genetics , Cytochrome P-450 Enzyme System/metabolism , Intramolecular Oxidoreductases/genetics , Intramolecular Oxidoreductases/metabolism , Animals , Arachidonic Acid/metabolism , Baculoviridae/genetics , COS Cells , Cell Line , Chlorocebus aethiops , Cyclooxygenase 2/isolation & purification , Cyclooxygenase 2/pharmacology , Cytochrome P-450 Enzyme System/isolation & purification , Cytochrome P-450 Enzyme System/pharmacology , DNA, Complementary/genetics , Drug Design , Epoprostenol/biosynthesis , Genetic Vectors , Humans , In Vitro Techniques , Intramolecular Oxidoreductases/isolation & purification , Intramolecular Oxidoreductases/pharmacology , Kinetics , Nuclear Magnetic Resonance, Biomolecular , Platelet Aggregation/drug effects , Protein Engineering , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/isolation & purification , Recombinant Fusion Proteins/metabolism , Recombinant Fusion Proteins/pharmacology , Spodoptera
15.
Article in English | MEDLINE | ID: mdl-18607105

ABSTRACT

Oxylipins are oxygenated derivatives of fatty acids and pivotal signaling molecules in plants and animals. Allene oxide synthase (AOS) is a key cytochrome P450 CYP74 enzyme involved in the biosynthesis of plant oxylipin jasmonates to convert 13(S)-hydroperoxide to allene oxide. Guayule (Parthenium argentatum) AOS, CYP74A2, was expressed in Escherichia coli. Protein was purified using affinity chromatography and size exclusion chromatography, and then crystallized. Two different crystal forms were obtained from 0.2 M (NH(4))H(2)PO(4), 50% MPD, 0.1 M Tris, pH 8.5 at 277 K using the hanging-drop vapor-diffusion method. Preliminary X-ray analysis was carried out, and the crystals were found to belong to the tetragonal space group I422 with cell parameters a = b = 126.5, c = 163.9 A, and the monoclinic space group C2 with cell parameters a = 336.5, b = 184.2, c = 159.0 A, beta = 118.6 degrees . Diffraction data were collected to 2.4 A resolution from a tetragonal form of crystal using a home X-ray source.


Subject(s)
Asteraceae , Cytochrome P-450 Enzyme System/chemistry , Intramolecular Oxidoreductases/chemistry , Plant Proteins/chemistry , X-Ray Diffraction , Crystallization/methods , Cytochrome P-450 Enzyme System/isolation & purification , Intramolecular Oxidoreductases/isolation & purification , Plant Extracts/chemistry , Plant Extracts/isolation & purification , Plant Proteins/isolation & purification
16.
Acta Biochim Biophys Sin (Shanghai) ; 40(6): 489-96, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18535747

ABSTRACT

Lipocalin-type prostaglandin (PG) D synthase (L-PGDS) is the only member of the lipocalin superfamily that displays enzymatic activity. It binds lipophilic ligands with high affinity and also can catalyze PGH2 to produce PGD2. Three cysteine residues, Cys65, Cys89, and Cys186 in L-PGDS, are conserved among all species, of which Cys89 and Cys186 residues form a disulfide bridge. In this study, we clarified the effects of thiol groups on the structure of the protein and investigated the structural significance of Cys residues of rat L-PGDS by site-directed mutagenesis. Four mutants were constructed by substituting Cys residues with alanine to identify the correct formation of disulfide bonds among these three residues. The effects of thiol groups on the structure of rat L-PGDS were also identified by these mutants. Analysis of HSQC experiments indicated that these enzymes were all properly folded with well defined tertiary structures. As the first step towards the 3-D nuclear magnetic resonance solution structure, we optimized expression of recombinant rat L-PGDS in Escherichia coli and established an efficient and economic purification protocol yielding large amounts of pure isotopically labeled rat L-PGDS. The results of assignments indicated that the wild-type rat L-PGDS obtained using this expression system was suitable for determination of 3-D nuclear magnetic resonance solution structure.


Subject(s)
Escherichia coli/physiology , Intramolecular Oxidoreductases/chemistry , Intramolecular Oxidoreductases/metabolism , Lipocalins/chemistry , Lipocalins/metabolism , Magnetic Resonance Spectroscopy/methods , Amino Acid Substitution , Animals , Cysteine/chemistry , Cysteine/genetics , Enzyme Activation , Enzyme Stability , Intramolecular Oxidoreductases/genetics , Intramolecular Oxidoreductases/isolation & purification , Lipocalins/genetics , Lipocalins/isolation & purification , Mutagenesis, Site-Directed , Protein Engineering/methods , Rats , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism
17.
Scand J Immunol ; 67(2): 121-32, 2008 Feb.
Article in English | MEDLINE | ID: mdl-18201367

ABSTRACT

Macrophage migration inhibitory factor (MIF) is found in immune-privileged sites and inhibits cytotoxicity mediated by CD3-ve lymphokine-activated killer cells (LAK). The mechanism by which MIF attenuates LAK cytotoxicity is unknown. We provide evidence that MIF has a major histocompatibility complex (MHC) class I-like motif. A monoclonal antibody (OX18) that binds a conserved region of rat MHC class I proteins binds native MIF. Anti-MIF polyclonal antibodies bind MHC class I. Epitope mapping suggests OX18 binds a loop of MHC class I bound by several receptors for MHC class I. A sequence (PRPEG) within the proposed OX18-binding site on MHC class I exists with a short insertion in MIF. OX18 does not bind MIF that is denatured by SDS-PAGE. This suggests the OX18 epitope is dependent on higher order structure in MIF. Interestingly, MIF inhibits binding of tetramers of MHC class I (H2D(b)) to LAK cells, suggesting it may bind to receptors for MHC class I. MIF may be an example where small regions of MHC class I are used by endogenous and viral proteins to control cytotoxicity mediated by immune cells.


Subject(s)
Histocompatibility Antigens Class I/immunology , Intramolecular Oxidoreductases/immunology , Killer Cells, Lymphokine-Activated/immunology , Macrophage Migration-Inhibitory Factors/immunology , Amino Acid Motifs , Animals , Antibodies, Monoclonal/immunology , Blotting, Western , Epitope Mapping , Humans , Intramolecular Oxidoreductases/isolation & purification , Macrophage Migration-Inhibitory Factors/isolation & purification , Male , Mice , Mice, Inbred BALB C , Models, Molecular , Molecular Sequence Data , Rats
18.
Biochem Biophys Res Commun ; 361(3): 675-80, 2007 Sep 28.
Article in English | MEDLINE | ID: mdl-17669365

ABSTRACT

Delta(1)-Tetrahydrocannabinolic acid (THCA) synthase is the enzyme that catalyzes the oxidative cyclization of cannabigerolic acid into THCA, the acidic precursor of Delta(1)-tetrahydrocannabinol. We developed a novel expression system for THCA synthase using a methylotrophic yeast Pichia pastoris as a host. Under optimized conditions, the transgenic P. pastoris secreted approximately 1.32nkat/l of THCA synthase activity, and the culture medium, from which the cells were removed, effectively synthesized THCA from cannabigerolic acid with a approximately 98% conversion rate. The secreted THCA synthase was readily purified to homogeneity. Interestingly, endoglycosidase treatment afforded a deglycosylated THCA synthase with more catalytic activity than that of the glycosylated form. The non-glycosylated THCA synthase should be suitable for structure-function studies because it displayed much more activity than the previously reported native enzyme from Cannabis sativa as well as the recombinant enzyme from insect cell cultures.


Subject(s)
Dronabinol/analogs & derivatives , Intramolecular Oxidoreductases/metabolism , Pichia/genetics , Benzoates/metabolism , Dronabinol/biosynthesis , Dronabinol/metabolism , Intramolecular Oxidoreductases/genetics , Intramolecular Oxidoreductases/isolation & purification , Pichia/classification , Pichia/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Time Factors , Transgenes
19.
Proteomics ; 7(15): 2557-69, 2007 Aug.
Article in English | MEDLINE | ID: mdl-17623277

ABSTRACT

A novel dopachrome conversion enzyme (DCE) is present in insects and involved in their melanization pathway. DCE shares no sequence homology with any noninsect species from bacteria to humans. Several DCE sequences have been available, but enzyme structure and catalytic mechanism are unclear. This study concerns DCE PTMs, especially glycosylation. A mosquito DCE was purified and its monosaccharide composition, N-glycosylation site, and oligosaccharide structures were determined. Results showed that N-acetyl D-glucosamine and D-mannose are the major monosaccharides and L-fucose, D-xylose, and D-arabinose are the minor ones in mosquito DCE. Glycosylation site and oligosaccharide structures were elucidated from MS and MS/MS spectra of trypsin-digested DCE glycopeptides. A single N-glycosylation site (Asn285 -Glu-Thr) was identified in DCE and was proven to be fully glycosylated. Man3GlcNAc2, Man3(Fuc)1-2GlcNAc2, and their truncated structures were the dominant oligosaccharides. In addition, high mannose-type structures (Man4-7(Fuc)GlcNAc2) were also identified. Removal of DCE N-oligosaccharides with peptide N-glycosidase (PNGase F) decreased its activity and thermal stability. However, partial DCE deglycosylation with alpha-mannosidase or alpha-fucosidase somewhat stimulated its activity and improved its thermal stability. During mass spectrometric analysis of DCE glycopeptides, their CID patterns were highly intriguing, in that some glycopeptides underwent both C-terminal rearrangement and formation of dimeric structures during CID. Results of this study provide an interesting example in terms of potential complexity of the glycopeptide CID fragmentation pattern.


Subject(s)
Aedes/enzymology , Intramolecular Oxidoreductases/chemistry , Intramolecular Oxidoreductases/metabolism , Monosaccharides/chemistry , Proteome/analysis , Amino Acid Sequence , Animals , Carbohydrate Conformation , Carbohydrate Sequence , Enzyme Stability , Glycosylation , Hot Temperature , Intramolecular Oxidoreductases/isolation & purification , Kinetics , Mass Spectrometry , Molecular Sequence Data , Molecular Weight , Monosaccharides/analysis , Proteomics/methods , Spectrometry, Mass, Electrospray Ionization , Tandem Mass Spectrometry , Trypsin/pharmacology
20.
Arch Biochem Biophys ; 461(2): 159-68, 2007 May 15.
Article in English | MEDLINE | ID: mdl-17459323

ABSTRACT

Prostacyclin synthase (PGIS) and thromboxane synthase (TXAS) are atypical cytochrome P450s. They do not require NADPH or dioxygen for isomerization of prostaglandin H(2) (PGH(2)) to produce prostacyclin (PGI(2)) and thromboxane A(2) (TXA(2)). PGI(2) and TXA(2) have opposing actions on platelet aggregation and blood vessel tone. In this report, we use a lipid hydroperoxide, 15-hydroperoxyeicosatetraenoic acid (15-HPETE), to explore the active site characteristics of PGIS and TXAS. The two enzymes transformed 15-HPETE not only into 13-hydroxy-14,15-epoxy-5,8,11-eicosatrienoic acid (13-OH-14,15-EET), like many microsomal P450s, but also to 15-ketoeicosatetraenoic acid (15-KETE) and 15-hydroxyeicosatetraenoic acid (15-HETE). 13-OH-14,15-EET and 15-KETE result from homolytic cleavage of the O-O bond, whereas 15-HETE results from heterolytic cleavage, a common peroxidase pathway. About 80% of 15-HPETE was homolytically cleaved by PGIS and 60% was homolytically cleaved by TXAS. The V(max) of homolytic cleavage is 3.5-fold faster than heterolytic cleavage for PGIS-catalyzed reactions (1100 min(-1)vs. 320 min(-1)) and 1.4-fold faster for TXAS (170 min(-1)vs. 120 min(-1)). Similar K(M) values for homolytic and heterolytic cleavages were found for PGIS ( approximately 60 microM 15-HPETE) and TXAS ( approximately 80 microM 15-HPETE), making PGIS a more efficient catalyst for the 15-HPETE reaction.


Subject(s)
Cytochrome P-450 Enzyme System/metabolism , Intramolecular Oxidoreductases/metabolism , Leukotrienes/metabolism , Lipid Peroxides/metabolism , Thromboxane-A Synthase/metabolism , Catalysis , Cytochrome P-450 Enzyme System/biosynthesis , Cytochrome P-450 Enzyme System/genetics , Cytochrome P-450 Enzyme System/isolation & purification , Humans , Intramolecular Oxidoreductases/biosynthesis , Intramolecular Oxidoreductases/genetics , Intramolecular Oxidoreductases/isolation & purification
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