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1.
Int J Mol Sci ; 23(3)2022 Jan 19.
Article in English | MEDLINE | ID: mdl-35162997

ABSTRACT

Krüppel-associated box (KRAB) zinc finger proteins are a large class of tetrapod transcription factors that usually exert transcriptional repression through recruitment of TRIM28/KAP1. The evolutionary root of modern KRAB domains (mKRAB) can be traced back to an ancestral motif (aKRAB) that occurs even in invertebrates. Here, we first stratified three subgroups of aKRAB sequences from the animal kingdom (PRDM9, SSX and coelacanth KZNF families) and defined ancestral subdomains for KRAB-A and KRAB-B. Using human ZNF10 mKRAB-AB as blueprints for function, we then identified the necessary amino acid changes that transform the inactive aKRAB-A of human PRDM9 into an mKRAB domain capable of mediating silencing and complexing TRIM28/KAP1 in human cells when employed as a hybrid with ZNF10-B. Full gain of function required replacement of residues KR by the conserved motif MLE (positionsA32-A34), which inserted an additional residue, and exchange of A9/S for F, A20/M for L, and A27/R for V. AlphaFold2 modelling documented an evolutionary conserved L-shaped body of two α-helices in all KRAB domains. It is transformed into a characteristic spatial arrangement typical for mKRAB-AB upon the amino acid replacements and in conjunction with a third helix supplied by mKRAB-B. Side-chains pointing outward from the core KRAB 3D structure may reveal a protein-protein interaction code enabling graded binding of TRIM28 to different KRAB domains. Our data provide basic insights into structure-function relationships and emulate transitions of KRAB during evolution.


Subject(s)
Histone-Lysine N-Methyltransferase/chemistry , Histone-Lysine N-Methyltransferase/metabolism , Invertebrates/metabolism , Kruppel-Like Transcription Factors/chemistry , Repressor Proteins/chemistry , Tripartite Motif-Containing Protein 28/metabolism , Amino Acid Sequence , Animals , Binding Sites , Conserved Sequence , Evolution, Molecular , Gain of Function Mutation , Histone-Lysine N-Methyltransferase/genetics , Humans , Kruppel-Like Transcription Factors/genetics , Models, Molecular , Protein Conformation, alpha-Helical , Protein Domains , Repressor Proteins/genetics
2.
Nat Commun ; 12(1): 5579, 2021 09 22.
Article in English | MEDLINE | ID: mdl-34552088

ABSTRACT

Expression of a few master transcription factors can reprogram the epigenetic landscape and three-dimensional chromatin topology of differentiated cells and achieve pluripotency. During reprogramming, thousands of long-range chromatin contacts are altered, and changes in promoter association with enhancers dramatically influence transcription. Molecular participants at these sites have been identified, but how this re-organization might be orchestrated is not known. Biomolecular condensation is implicated in subcellular organization, including the recruitment of RNA polymerase in transcriptional activation. Here, we show that reprogramming factor KLF4 undergoes biomolecular condensation even in the absence of its intrinsically disordered region. Liquid-liquid condensation of the isolated KLF4 DNA binding domain with a DNA fragment from the NANOG proximal promoter is enhanced by CpG methylation of a KLF4 cognate binding site. We propose KLF4-mediated condensation as one mechanism for selectively organizing and re-organizing the genome based on the local sequence and epigenetic state.


Subject(s)
Cellular Reprogramming , Chromatin/metabolism , DNA/metabolism , Kruppel-Like Transcription Factors/metabolism , Base Sequence , Cell Line , Cell Nucleus/metabolism , DNA/chemistry , DNA/genetics , DNA Methylation , Humans , Kruppel-Like Factor 4 , Kruppel-Like Transcription Factors/chemistry , Kruppel-Like Transcription Factors/genetics , Models, Molecular , Mutation , Nanog Homeobox Protein/genetics , Octamer Transcription Factor-3/genetics , Promoter Regions, Genetic , Protein Interaction Domains and Motifs , SOXB1 Transcription Factors/genetics , Zinc Fingers/genetics
3.
J Mol Biol ; 433(19): 167184, 2021 09 17.
Article in English | MEDLINE | ID: mdl-34364876

ABSTRACT

Previously evidence was presented that the single-nucleotide polymorphism rs1344706 located in an intronic region of the ZNF804A gene is associated with reduced transcript levels in fetal brains. This genetic variation in the gene encoding the zinc-finger protein ZNF804A is associated with schizophrenia (SZ) and bipolar disorder. Currently, the molecular and cellular function of ZNF804A is unclear. Here, we generated a high-confidence protein-protein interaction (PPI) network for ZNF804A using a combination of yeast two-hybrid and bioluminescence-based PPI detection assays, directly linking 15 proteins to the disease-associated target protein. Among the top hits was the signal transducer and activator of transcription 2 (STAT2), an interferon-regulated transcription factor. Detailed mechanistic studies revealed that STAT2 binds to the unstructured N terminus of ZNF804A. This interaction is mediated by multiple short amino acid motifs in ZNF804A but not by the conserved C2H2 zinc-finger domain, which is also located at the N terminus. Interestingly, investigations in HEK293 cells demonstrated that ZNF804A and STAT2 both co-translocate from the cytoplasm into the nucleus upon interferon (IFN) treatment. Furthermore, a concentration-dependent effect of ZNF804A overproduction on STAT2-mediated gene expression was observed using a luciferase reporter, which is under the control of an IFN-stimulated response element (ISRE). Together these results indicate the formation of ZNF804A:STAT2 protein complex and its translocation from the cytoplasm into the nucleus upon IFN stimulation, suggesting that it may function as a signal transducer that activates IFN-mediated gene expression programs.


Subject(s)
Interferon alpha-2/pharmacology , Kruppel-Like Transcription Factors/metabolism , STAT2 Transcription Factor/metabolism , Schizophrenia/genetics , Amino Acid Motifs , Binding Sites , Gene Expression Regulation/drug effects , HEK293 Cells , Humans , Kruppel-Like Transcription Factors/chemistry , Kruppel-Like Transcription Factors/genetics , Polymorphism, Single Nucleotide , Protein Domains , Protein Interaction Mapping , Two-Hybrid System Techniques
4.
Front Immunol ; 12: 648815, 2021.
Article in English | MEDLINE | ID: mdl-34305888

ABSTRACT

Multiple lines of evidence have demonstrated that cigarette smoke or Chronic Obstructive Pulmonary Disease upregulates angiotensin-converting enzyme 2, the cellular receptor for the entry of the severe acute respiratory syndrome coronavirus 2, which predisposes individuals to develop severe Coronavirus disease 2019. The reason for this observation is unknown. We recently reported that the loss of function of Miz1 in the lung epithelium in mice leads to a spontaneous COPD-like phenotype, associated with upregulation of angiotensin-converting enzyme 2. We also reported that cigarette smoke exposure downregulates Miz1 in lung epithelial cells and in mice, and Miz1 is also downregulated in the lungs of COPD patients. Here, we provide further evidence that Miz1 directly binds to and represses the promoter of angiotensin-converting enzyme 2 in mouse and human lung epithelial cells. Our data provide a potential molecular mechanism for the upregulation of angiotensin-converting enzyme 2 observed in smokers and COPD patients, with implication in severe Coronavirus disease 2019.


Subject(s)
Angiotensin-Converting Enzyme 2/genetics , Kruppel-Like Transcription Factors/metabolism , Receptors, Virus/genetics , Transcription, Genetic , Alveolar Epithelial Cells/metabolism , Angiotensin-Converting Enzyme 2/metabolism , Animals , BTB-POZ Domain , Cell Line , Cigarette Smoking/adverse effects , Kruppel-Like Transcription Factors/chemistry , Kruppel-Like Transcription Factors/genetics , Mice , Promoter Regions, Genetic , Protein Binding , Receptors, Virus/metabolism , SARS-CoV-2/physiology , Spike Glycoprotein, Coronavirus/metabolism , Transcription, Genetic/drug effects , Tumor Necrosis Factors/pharmacology , Virus Internalization
5.
Gene ; 787: 145643, 2021 Jun 30.
Article in English | MEDLINE | ID: mdl-33848577

ABSTRACT

Krüppel-like factors (KLF) refer to a group of conserved zinc finger-containing transcription factors that are involved in various physiological and biological processes, including cell proliferation, differentiation, development, and apoptosis. Some bioinformatics methods such as sequence similarity searches, multiple sequence alignment, phylogenetic reconstruction, and gene synteny analysis have also been proposed to broaden our knowledge of KLF proteins. In this study, we proposed a novel computational approach by using machine learning on features calculated from primary sequences. To detail, our XGBoost-based model is efficient in identifying KLF proteins, with accuracy of 96.4% and MCC of 0.704. It also holds a promising performance when testing our model on an independent dataset. Therefore, our model could serve as an useful tool to identify new KLF proteins and provide necessary information for biologists and researchers in KLF proteins. Our machine learning source codes as well as datasets are freely available at https://github.com/khanhlee/KLF-XGB.


Subject(s)
Computational Biology , Kruppel-Like Transcription Factors/chemistry , Algorithms , Amino Acid Sequence , Animals , Computational Biology/methods , Databases, Protein , Humans , Kruppel-Like Transcription Factors/analysis , Kruppel-Like Transcription Factors/genetics , Machine Learning , Models, Biological
6.
Cancer Sci ; 112(6): 2097-2117, 2021 Jun.
Article in English | MEDLINE | ID: mdl-33811715

ABSTRACT

Krüppel-like factor 5 (KLF5) is a member of the KLF family. Recent studies have suggested that KLF5 regulates the expression of a large number of new target genes and participates in diverse cellular functions, such as stemness, proliferation, apoptosis, autophagy, and migration. In response to multiple signaling pathways, various transcriptional modulation and posttranslational modifications affect the expression level and activity of KLF5. Several transgenic mouse models have revealed the physiological and pathological functions of KLF5 in different cancers. Studies of KLF5 will provide prognostic biomarkers, therapeutic targets, and potential drugs for cancers.


Subject(s)
Gene Expression Regulation, Neoplastic , Kruppel-Like Transcription Factors/genetics , Kruppel-Like Transcription Factors/metabolism , Neoplasms/pathology , Animals , Carcinogenesis/genetics , Carcinogenesis/metabolism , Cell Physiological Phenomena , Humans , Kruppel-Like Transcription Factors/chemistry , Molecular Targeted Therapy , Neoplasms/genetics , Neoplasms/metabolism , Neoplasms/therapy , Protein Binding , Protein Conformation , Protein Processing, Post-Translational , Signal Transduction
7.
Biochem Biophys Res Commun ; 553: 51-57, 2021 05 14.
Article in English | MEDLINE | ID: mdl-33756345

ABSTRACT

The tumor suppressor gene HIC1 (Hypermethylated in Cancer 1) encodes a transcriptional repressor involved in the DNA-damage response. A SUMOylation increase on HIC1 Lysine314 favors the direct transcriptional repression of SIRT1 and thus the P53-dependent apoptotic response to irreparable DNA double strand breaks (DSBs). HIC1 is also essential for DSBs repair but in a SUMOylation-independent manner. Here, we show that repairable DSBs induced by a 1 h Etoposide treatment results in three specific posttranslational modifications (PTMs) of HIC1. Two of these PTMs, phosphorylation of Serine 694 and Acetylation of Lysine 623 are located in the conserved HIC1 C-terminal region located downstream of the Zinc Finger DNA-binding domain. By contrast, phosphorylation of Serine 285 found in the poorly conserved central region is unique to the human protein. We showed that Ser694 phosphorylation is mediated mainly by the PIKK kinase ATM and is essential for the DNA repair activity of HIC1 as demonstrated by the lack of efficiency of the S694A point mutant in Comet assays. Thus, our results provide the first evidence for a functional role of the conserved HIC1 C-terminal region as a novel ATM substrate that plays an essential role in the cellular HIC1-mediated cellular response to repairable DSBs.


Subject(s)
Ataxia Telangiectasia Mutated Proteins/metabolism , DNA Repair , Kruppel-Like Transcription Factors/chemistry , Kruppel-Like Transcription Factors/metabolism , Phosphoserine/metabolism , Animals , Cell Line , Comet Assay , Conserved Sequence , DNA Damage , Humans , Phosphorylation
8.
Anim Sci J ; 92(1): e13514, 2021.
Article in English | MEDLINE | ID: mdl-33522088

ABSTRACT

Previous research reported that KLF3 plays different roles in the regulation of adipose deposition across species. However, the exact function of KLF3 in goat subcutaneous adipocyte remains unknown. Here, the goat KLF3 gene was firstly cloned and showed that the mRNA sequence of the goat KLF3 gene was 1,264 bp (GenBank accession number: KU041753.1) and its coding sequence was 1,037 bp, encoding 345 amino acids with three classic zinc finger domains of KLFs family at its C-terminus. The alignment of the amino acid sequence of KLF3 among various species demonstrated that goat had the highest homology to that of sheep, presenting 99.4% similarity, while the homology similarity to that of mice presented only 93.62% in contrast. Furthermore, KLF3 had highest mRNA level in fat tissue and lowest level in the heart in comparison. Additionally, the mRNA level of KLF3 gradually tended to increase during adipogenesis. Interestingly, overexpression of KLF3 increased lipid accumulation. In line with this, the gain-of-function of KLF3 dramatically elevated the mRNA levels of TG synthetic genes and adipogenic maker genes (p < .01) . Moreover, overexpression of KLF3 upregulated all the potential target genes, except for C/EBPα. These results suggested that KLF3 is a positive regulator for subcutaneous adipocyte differentiation in goats.


Subject(s)
Adipocytes/physiology , Cell Differentiation/genetics , Gene Expression , Goats/genetics , Goats/physiology , Kruppel-Like Transcription Factors/genetics , Kruppel-Like Transcription Factors/physiology , Subcutaneous Fat/cytology , Amino Acid Sequence , Animals , Cells, Cultured , Gene Expression Regulation, Developmental/genetics , Gene Expression Regulation, Developmental/physiology , Kruppel-Like Transcription Factors/chemistry , Kruppel-Like Transcription Factors/metabolism , Lipid Metabolism/genetics , RNA, Messenger/genetics , RNA, Messenger/metabolism
9.
J Mol Biol ; 433(2): 166722, 2021 01 22.
Article in English | MEDLINE | ID: mdl-33227311

ABSTRACT

The ZZ-type zinc finger and EF-hand domain protein 1 (ZZEF1) is a multidomain-containing protein. Mutations of ZZEF1 has been implicated in several kinds of human diseases such as diabetes and cancers. However, the function of the ZZEF protein remains largely unknown. Here we show that ZZEF1 functions as a histone H3 reader. The second ZZ domain of ZZEF1 (ZZEF1ZZ2) binds to the N-terminus of histone H3 and is capable of accommodating common epigenetic marks on the H3 tail. The N-terminal amino acids, especially Ala1, of H3 and an acidic cavity of ZZEF1ZZ2 are critical for the ZZ-H3 interaction. RNA-seq analysis in human lung cancer cell line H1299 reveals that downregulated genes upon ZZEF1 depletion are specifically enriched in genes regulated by Krüppel-like factors. Indeed, ZZEF1 physically interacts with KLF9 and KLF6, and regulates a common set of target genes of these transcription factors. Together, our findings suggest a model in which ZZEF1 binds to histone H3 tail and promotes KLF9/6-mediated gene regulation.


Subject(s)
Histones/chemistry , Kruppel-Like Transcription Factors/chemistry , Kruppel-Like Transcription Factors/metabolism , Zinc Fingers , Amino Acid Motifs , Amino Acid Sequence , Binding Sites , Cell Line, Tumor , Gene Expression Regulation , Histones/metabolism , Humans , Models, Biological , Protein Binding , Protein Interaction Domains and Motifs , Transcription Factors/chemistry , Transcription Factors/metabolism
10.
Biochem Pharmacol ; 183: 114351, 2021 01.
Article in English | MEDLINE | ID: mdl-33253644

ABSTRACT

Cancer is one of the leading causes of mortality worldwide, ranked second after heart disease. Despite recent advancements in diagnosis and treatment, there are still numerous problems associated with cancer progression, disease recurrence, and therapeutic resistance that are partially explored. Several studies have recently revealed that Krüppel-like factor 8 (KLF8) regulates transcription of genes linked with diverse biological processes, including proliferation, epithelial to mesenchymal transition (EMT), migration, invasion, and inflammation. KLF8 is expressed ubiquitously in mammalian cells, and its aberrant expression has been manifested with several cancer types. Earlier studies demonstrated the crucial role of KLF8 in DNA repair and resistance to apoptosis in numerous cancer types. Hence, studying the function of KLF8 from the perspective of cancer progression and therapy resistance would help develop a new therapeutic avenue. In this review, we summarize the clinical relevance of KLF8 expression in various malignancies, focusing on recent updates in EMT, cellular signaling, and cancer stem cells. We also address the contribution of KLF8 in development, DNA repair, chemoresistance, and its clinical utility as a predictive biomarker.


Subject(s)
Biomedical Research/trends , Kruppel-Like Transcription Factors/biosynthesis , Neoplasms/metabolism , Neoplastic Stem Cells/metabolism , Animals , DNA Repair/physiology , Epithelial-Mesenchymal Transition/physiology , Humans , Kruppel-Like Transcription Factors/chemistry , Kruppel-Like Transcription Factors/genetics , Neoplasms/genetics , Neoplasms/pathology , Neoplastic Stem Cells/pathology , Protein Structure, Secondary
11.
Sci Rep ; 10(1): 11636, 2020 07 15.
Article in English | MEDLINE | ID: mdl-32669659

ABSTRACT

N-methyl-2-pyrrolidone (NMP) is a versatile water-miscible polar aprotic solvent. It is used as a drug solubilizer and penetration enhancer in human and animal, yet its bioactivity properties remain elusive. Here, we report that NMP is a bioactive anti-inflammatory compound well tolerated in vivo, that shows efficacy in reducing disease in a mouse model of atherosclerosis. Mechanistically, NMP increases the expression of the transcription factor Kruppel-like factor 2 (KLF2). Monocytes and endothelial cells treated with NMP express increased levels of KLF2, produce less pro-inflammatory cytokines and adhesion molecules. We found that NMP attenuates monocyte adhesion to endothelial cells inflamed with tumor necrosis factor alpha (TNF-α) by reducing expression of adhesion molecules. We further show using KLF2 shRNA that the inhibitory effect of NMP on endothelial inflammation and subsequent monocyte adhesion is KLF2 dependent. Enhancing KLF2 expression and activity improves endothelial function, controls multiple genes critical for inflammation, and prevents atherosclerosis. Our findings demonstrate a consistent effect of NMP upon KLF2 activation and inflammation, biological processes central to atherogenesis. Our data suggest that inclusion of bioactive solvent NMP in pharmaceutical compositions to treat inflammatory disorders might be beneficial and safe, in particular to treat diseases of the vascular system, such as atherosclerosis.


Subject(s)
Inflammation/drug therapy , Kruppel-Like Transcription Factors/chemistry , Pyrrolidinones/chemistry , Solvents/chemistry , Animals , Anti-Inflammatory Agents/pharmacology , Aorta/metabolism , Apoptosis , Atherosclerosis , Cell Adhesion , Cell Line , DNA, Complementary/metabolism , Endothelial Cells/drug effects , Gene Expression Profiling , Gene Library , Human Umbilical Vein Endothelial Cells , Humans , Mice , Mice, Knockout, ApoE , Monocytes/cytology , Monocytes/drug effects , RNA, Small Interfering/metabolism , Tumor Necrosis Factor-alpha/metabolism
12.
Blood ; 135(25): 2302-2315, 2020 06 18.
Article in English | MEDLINE | ID: mdl-32384137

ABSTRACT

Erythropoiesis is a complex multistage process that involves differentiation of early erythroid progenitors to enucleated mature red blood cells, in which lineage-specific transcription factors play essential roles. Erythroid Krüppel-like factor (EKLF/KLF1) is a pleiotropic erythroid transcription factor that is required for the proper maturation of the erythroid cells, whose expression and activation are tightly controlled in a temporal and differentiation stage-specific manner. Here, we uncover a novel role of G-protein pathway suppressor 2 (GPS2), a subunit of the nuclear receptor corepressor/silencing mediator of retinoic acid and thyroid hormone receptor corepressor complex, in erythrocyte differentiation. Our study demonstrates that knockdown of GPS2 significantly suppresses erythroid differentiation of human CD34+ cells cultured in vitro and xenotransplanted in nonobese diabetic/severe combined immunodeficiency/interleukin-2 receptor γ-chain null mice. Moreover, global deletion of GPS2 in mice causes impaired erythropoiesis in the fetal liver and leads to severe anemia. Flow cytometric analysis and Wright-Giemsa staining show a defective differentiation at late stages of erythropoiesis in Gps2-/- embryos. Mechanistically, GPS2 interacts with EKLF and prevents proteasome-mediated degradation of EKLF, thereby increasing EKLF stability and transcriptional activity. Moreover, we identify the amino acids 191-230 region in EKLF protein, responsible for GPS2 binding, that is highly conserved in mammals and essential for EKLF protein stability. Collectively, our study uncovers a previously unknown role of GPS2 as a posttranslational regulator that enhances the stability of EKLF protein and thereby promotes erythroid differentiation.


Subject(s)
Erythropoiesis/physiology , Intracellular Signaling Peptides and Proteins/physiology , Kruppel-Like Transcription Factors/physiology , Amino Acid Sequence , Animals , Cells, Cultured , Conserved Sequence , Erythroid Precursor Cells/cytology , Gene Knockdown Techniques , Hematopoietic Stem Cell Transplantation , Humans , Interleukin Receptor Common gamma Subunit/deficiency , Intracellular Signaling Peptides and Proteins/biosynthesis , Intracellular Signaling Peptides and Proteins/deficiency , Intracellular Signaling Peptides and Proteins/genetics , Kruppel-Like Transcription Factors/antagonists & inhibitors , Kruppel-Like Transcription Factors/chemistry , Liver/embryology , Mice , Mice, Inbred C57BL , Mice, Inbred NOD , Mice, SCID , Protein Interaction Mapping , Protein Processing, Post-Translational , Protein Stability , Proteolysis , RNA Interference , RNA, Small Interfering/genetics , Sequence Alignment , Sequence Homology, Amino Acid , Transcription, Genetic , Transplantation, Heterologous , Ubiquitination , Up-Regulation
13.
FASEB J ; 34(5): 6907-6919, 2020 05.
Article in English | MEDLINE | ID: mdl-32267586

ABSTRACT

DNA replication is essential for cell proliferation and is one of the cell cycle stages where DNA is more vulnerable. Replication stress is a prominent property of tumor cells and an emerging target for cancer therapy. Although it is not directly involved in nucleotide incorporation, Claspin is a protein with relevant functions in DNA replication. It harbors a DNA-binding domain that interacts preferentially with branched or forked DNA molecules. It also acts as a platform for the interaction of proteins related to DNA damage checkpoint activation, DNA repair, DNA replication origin firing, and fork progression. In order to find new proteins potentially involved in the regulation of DNA replication, we performed a two-hybrid screen to discover new Claspin-binding proteins. This system allowed us to identify the zinc-finger protein OZF (ZNF146) as a new Claspin-interacting protein. OZF is also present at replication forks and co-immunoprecipitates not only with Claspin but also with other replisome components. Interestingly, OZF depletion does not affect DNA replication in a normal cell cycle, but its depletion induces a reduction in the fork progression rate under replication stress conditions. Our results suggest that OZF is a Claspin-binding protein with a specific function in fork progression under replication stress.


Subject(s)
Adaptor Proteins, Signal Transducing/metabolism , DNA Replication/physiology , Kruppel-Like Transcription Factors/metabolism , RNA-Binding Proteins/metabolism , Adaptor Proteins, Signal Transducing/chemistry , Adaptor Proteins, Signal Transducing/genetics , Carrier Proteins/chemistry , Carrier Proteins/genetics , Carrier Proteins/metabolism , Cell Cycle , Cell Line , HCT116 Cells , HEK293 Cells , HeLa Cells , Humans , Kruppel-Like Transcription Factors/chemistry , Kruppel-Like Transcription Factors/genetics , Protein Binding , Protein Interaction Domains and Motifs , RNA Interference , RNA-Binding Proteins/chemistry , RNA-Binding Proteins/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Stress, Physiological , Two-Hybrid System Techniques
14.
Stem Cell Reports ; 14(3): 520-527, 2020 03 10.
Article in English | MEDLINE | ID: mdl-32109368

ABSTRACT

A common strategy for multi-protein expression is to link genes by self-cleaving 2A peptide sequences. Yet, little is known how the 2A peptide-derived N-terminal proline or adjacent non-native residues introduced during cDNA cloning affects protein stoichiometry. Polycistronic reprogramming constructs with altered KLF4 protein stoichiometry can influence induced pluripotent stem cell (iPSC) generation. We studied the impact of N-terminal 2A peptide-adjacent residues on the protein stability of two KLF4 isoforms, and assayed their capacity to generate iPSCs. Here, we show that the N-terminal proline remnant of the 2A peptide, alone or in combination with leucine, introduced during polycistronic cloning, destabilizes KLF4 resulting in increased protein degradation, which hinders reprogramming. Interestingly, the addition of charged and hydrophilic amino acids, such as glutamate or lysine stabilizes KLF4, enhancing reprogramming phenotypes. These findings raise awareness that N-terminal modification with 2A peptide-derived proline or additional cloning conventions may affect protein stability within polycistronic constructs.


Subject(s)
Amino Acids/metabolism , Cellular Reprogramming , Kruppel-Like Transcription Factors/chemistry , Kruppel-Like Transcription Factors/metabolism , Peptides/metabolism , Amino Acid Sequence , Animals , Female , Glutamic Acid/metabolism , HEK293 Cells , Humans , Hydrophobic and Hydrophilic Interactions , Kruppel-Like Factor 4 , Mice, Inbred C57BL , Proteasome Endopeptidase Complex/metabolism , Protein Isoforms/chemistry , Protein Isoforms/metabolism , Protein Stability , Proteolysis
15.
Gene ; 735: 144407, 2020 Apr 20.
Article in English | MEDLINE | ID: mdl-32007582

ABSTRACT

Krüppel-like factor13 (klf13), a member of the Krüppel-like factor family, plays a vital role in cell proliferation and differentiation. When sea cucumber Apostichopus japonicus is attacted by predators, it can spit viscera in order to escape attack, and then complete the intestine regeneration process within 15 days. However, the potential role of klf13 from A. japonicus (Aj-klf13) in the intestine regeneration of sea cucumber A. japonicus still remains unknown. In present paper, the full-length cDNA of klf13 gene from A. japonicus was cloned by RACE techniques, and it was composed of 2496 bp, including a 245 bp 5' UTR, a 1396 bp 3' UTR and a 855 bp open reading frame, which encoded a polypeptide of 284 amino acids and C2H2 zinc finger domains. The expression level of Aj-klf13 showed an increasing trend in intestine regeneration process of sea cucumber, and it reached the highest at 6 days, returning to the normal at 15 days. By western blot, the expression level of Aj-KLF13 protein was basically consistent with that of Aj-klf13 gene. The expression locations of protein by immunofluorescence indicated that Aj-KLF13 was widely expressed in the normal physiological state and intestine regeneration process of sea cucumbers, which was in the nucleus. There was tissue specificity of the protein, which was mainly distributed in luminal epithelium and coelomic epithelium. These results indicate that Aj-klf13 plays a crucial role in the intestine regeneration process of sea cucumber A. japonicus.


Subject(s)
Intestines/physiology , Kruppel-Like Transcription Factors/genetics , Regeneration , Stichopus/genetics , Animals , Cloning, Molecular , Cyclic AMP Response Element-Binding Protein/metabolism , Cyclin-Dependent Kinase 2/metabolism , Intestinal Mucosa/metabolism , Kruppel-Like Transcription Factors/chemistry , Kruppel-Like Transcription Factors/metabolism , Stichopus/metabolism
16.
Cells ; 9(1)2020 01 16.
Article in English | MEDLINE | ID: mdl-31963147

ABSTRACT

Over 90% of cancer deaths are due to cancer cells metastasizing into other organs. Invasion is a prerequisite for metastasis formation. Thus, inhibition of invasion can be an efficient way to prevent disease progression in these patients. This could be achieved by targeting the molecules regulating invasion. One of these is an oncogenic transcription factor, Myeloid Zinc Finger 1 (MZF1). Dysregulated transcription factors represent a unique, increasing group of drug targets that are responsible for aberrant gene expression in cancer and are important nodes driving cancer malignancy. Recent studies report of a central involvement of MZF1 in the invasion and metastasis of various solid cancers. In this review, we summarize the research on MZF1 in cancer including its function and role in lysosome-mediated invasion and in the expression of genes involved in epithelial to mesenchymal transition. We also discuss possible means to target it on the basis of the current knowledge of its function in cancer.


Subject(s)
Kruppel-Like Transcription Factors/metabolism , Neoplasms/metabolism , Neoplasms/pathology , Zinc Fingers , Animals , Humans , Kruppel-Like Transcription Factors/chemistry , Models, Biological , Molecular Targeted Therapy , Neoplasm Invasiveness
17.
Int J Radiat Biol ; 96(6): 790-802, 2020 06.
Article in English | MEDLINE | ID: mdl-31985344

ABSTRACT

Aims: Radiotherapy is predominantly used as one of the treatment modalities to treat local tumor in colorectal cancer (CRC). Hindrance in disease treatment can be attributed to radio-tolerance of cancer stem cells (CSCs) subsistence in the tumor. Understanding the radio-resistant property of CSCs might help in the accomplishment of targeted radiotherapy treatment and increased disease-free survival. Telomeric RAP1 contributes in modulation of various transcription factors leading to aberrant cell proliferation and tumor cell migration. Therefore, we investigated the role of RAP1 in maintaining resistance phenotype and acquired stemness in radio-resistant cells.Main methods: Characterization of HCT116 derived radio-resistant cell (HCT116RR) was performed by cell survival and DNA damage profiling. RAP1 silenced cells were investigated for DNA damage and expression of CSC markers through western blotting and Real-time PCR post-irradiation. Molecular docking and co-immunoprecipitation study were performed to investigate RAP1 and KLF4 interaction followed by RAP1 protein status profiling in CRC patient.Key findings: We established radio-resistant cells, which showed tolerance to radiotherapy and elevated expression of CSC markers along with RAP1. RAP1 silencing showed enhanced DNA damage and reduced expression of CSC markers post-irradiation. We observed strong physical interaction between RAP1 and KLF4 protein. Furthermore, higher RAP1 expression was observed in the tumor of CRC patients. Dataset analysis also revealed that high expression of RAP1 expression is associated with poor prognosis.Significance: We conclude that higher expression of RAP1 implicates its possible role in promoting radio-resistance in CRC cells by modulating DNA damage and CSC phenotype.


Subject(s)
Biomarkers, Tumor/metabolism , Colorectal Neoplasms/metabolism , Colorectal Neoplasms/radiotherapy , Kruppel-Like Transcription Factors/metabolism , Radiation Tolerance , Telomere-Binding Proteins/metabolism , Telomere/genetics , Biomarkers, Tumor/chemistry , Colorectal Neoplasms/diagnosis , Colorectal Neoplasms/pathology , Female , Gene Silencing , HCT116 Cells , Humans , Kruppel-Like Factor 4 , Kruppel-Like Transcription Factors/chemistry , Male , Molecular Docking Simulation , Neoplastic Stem Cells/pathology , Neoplastic Stem Cells/radiation effects , Prognosis , Protein Binding , Protein Domains , Shelterin Complex
18.
Biomed Pharmacother ; 123: 109778, 2020 Mar.
Article in English | MEDLINE | ID: mdl-31855735

ABSTRACT

Breast cancer has accounted for the leading cause of cancer-related mortality among women worldwide. Although the progress in its diagnosis and treatment has come at a remarkable pace during the past several decades, there are still a wide array of problems regarding its progression, metastasis and treatment resistance that have not yet been fully clarified. Recently, an increasing number of studies have revealed that some members of Krüppel-like factors(KLFs) are significantly associated with cell proliferation, apoptosis, metastasis, cancer stem cell regulation and prognostic and predictive value for patients in breast cancer, indicating their promising prognostic and predictive potential for breast cancer survival and outcome. In this review, we will summarize our current knowledge of the functions, regulations and clinical relevance of KLFs in breast cancer.


Subject(s)
Breast Neoplasms/metabolism , Kruppel-Like Transcription Factors/metabolism , Apoptosis , Breast Neoplasms/pathology , Drug Resistance, Neoplasm , Female , Humans , Kruppel-Like Transcription Factors/chemistry , Neoplasm Metastasis , Phylogeny
19.
Acta Biochim Biophys Sin (Shanghai) ; 52(1): 84-90, 2020 Jan 02.
Article in English | MEDLINE | ID: mdl-31828306

ABSTRACT

KLF7, one of candidate genes in neurotherapy and metabolic syndrome, has been studied in adipogenesis of mammalian species and birds. However, the effect of the third C2H2 zinc finger of KLF7 for its transcriptional regulation in adipogenesis has not been well understood. Here, the wild-type chicken KLF7 (KLF7) overexpression plasmid, pCMV-myc-KLF7, and two plasmids of chicken KLF7 mutants, i.e. pCMV-myc-KLF7m1 with half of the third zinc finger (KLF7m1) and pCMV-myc-KLF7m2 without the third zinc finger (KLF7m2), were constructed. Luciferase reporter assay in DF1 cells showed that the effect of chicken KLF7 overexpression on the promoter activity of LPL was greater than those of KLF7m1 and KLF7m2 (P < 0.05). There was no significant difference among the overexpression of KLF7, KLF7m1 and KLF7m2 on the promoter activities of FASN, C/EBPα and FABP4 (P > 0.05). Additionally, the effects of KLF7, KLF7m1 and KLF7m2 overexpression on the promoter activity of PPARγ were different. KLF7 overexpression had no significant effect on the PPARγ promoter activity (P > 0.05), KLF7m1 overexpression suppressed PPARγ promoter activity (P < 0.05), while KLF7m2 overexpression facilitated the promoter activity of PPARγ (P < 0.05), consistent with the results of western blot analysis. Our results suggested that the third zinc finger of chicken KLF7 may play a role in its transcriptional regulation of LPL and PPARγ but has no effect on its regulation of C/EBPα, FASN and FABP4. The third zinc finger of KLF7 might be a target for the treatment of metabolic disorder in chicken.


Subject(s)
Adipose Tissue/metabolism , CYS2-HIS2 Zinc Fingers , Kruppel-Like Transcription Factors/chemistry , Kruppel-Like Transcription Factors/genetics , Transcription, Genetic/genetics , Adipogenesis , Animals , Binding Sites , CCAAT-Enhancer-Binding Protein-alpha/genetics , CCAAT-Enhancer-Binding Protein-alpha/metabolism , Cell Line , Chickens , Fatty Acid Synthase, Type I/genetics , Fatty Acid Synthase, Type I/metabolism , Fatty Acid-Binding Proteins/genetics , Fatty Acid-Binding Proteins/metabolism , Gene Expression Regulation , Lipoprotein Lipase/genetics , Lipoprotein Lipase/metabolism , Mutant Proteins/genetics , PPAR gamma/genetics , PPAR gamma/metabolism , Plasmids/genetics , Promoter Regions, Genetic/genetics , Sequence Analysis , Transfection
20.
J Cell Biochem ; 121(3): 2197-2208, 2020 03.
Article in English | MEDLINE | ID: mdl-31724223

ABSTRACT

Acetylated Kruppel-like factor 5 (KLF5) is essential for transforming growth factor-ß (TGF-ß) to properly regulate gene transcription in the inhibition of cell proliferation and tumor growth. Ras oncogenic signaling can convert TGF-ß from a tumor suppressor to a tumor promoter; however, its ability to utilize the KLF5 transcription factor to modulate TGF-ß functions is still unknown. Therefore, in this study, we sought to determine whether Ras signaling altered TGF-ß-induced KLF5 acetylation and the assembly of the p300-KLF5-SMADs transcriptional complex in gene regulation. Not only did we determine that Ras signaling inhibited TGF-ß-induced KLF5 acetylation and interfered with TGF-ß function in p15 induction and Myc repression, but also TGF-ß-induced SMAD3 C-terminal region phosphorylation was necessary for TGF-ß to induce KLF5 acetylation. Moreover, Ras activation further interrupted the interactions amongst p300, KLF5, and SMAD4, as well as the binding of p300-KLF5-SMADs complex onto the TGF-ß-responsive promoter elements for both p15 and Myc. These findings suggested that KLF5 mediated the crosstalk between TGF-ß and Ras signaling, and that suppression of TGF-ß-induced KLF5 acetylation by Ras activation; this altered TGF-ß-induced assembly of p300-KLF5-SMADs complex onto gene promoters to convert the function of TGF-ß in gene regulation.


Subject(s)
Epidermis/drug effects , Epithelial Cells/drug effects , Kruppel-Like Transcription Factors/metabolism , Smad2 Protein/metabolism , Smad3 Protein/metabolism , Transforming Growth Factor beta/pharmacology , ras Proteins/metabolism , Acetylation , Apoptosis , Cell Proliferation , Cells, Cultured , Epidermis/metabolism , Epidermis/pathology , Epithelial Cells/metabolism , Epithelial Cells/pathology , Gene Expression Regulation , Humans , Kruppel-Like Transcription Factors/chemistry , Kruppel-Like Transcription Factors/genetics , Phosphorylation , Promoter Regions, Genetic , Signal Transduction , Smad2 Protein/genetics , Smad3 Protein/genetics , Transcription, Genetic , ras Proteins/genetics
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