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1.
Anat Histol Embryol ; 52(2): 223-233, 2023 Mar.
Article in English | MEDLINE | ID: mdl-36263925

ABSTRACT

The present study was undertaken to characterize the ultrastructural morphology of the blood cells of commonly reared chickens in the state of Mizoram, India under backyard poultry farming. For this study, 2 ml of whole blood was aseptically collected from the wings veins of 12 chickens of three different breeds namely the Zoar, Aseel and Rhode Island Red and processed for ultrastructural imaging under standard protocols. Under scanning electron microscopy (SEM) the matured erythrocytes of Zoar, Aseel and Rhode Island Red appeared elliptical in shape while the leukocytes and thrombocytes appeared round in shape with variable surface modifications. Under transmission electron microscopy (TEM) the granules of the heterophils of Zoar, Aseel and Rhode Island Red appeared predominantly fusiform in shape, the granules of the eosinophils appeared round in shape and that of the basophils appeared pleomorphic in shape. The cytoplasm of the monocytes, medium-to-large lymphocytes and thrombocytes of Zoar, Aseel and Rhode Island Red under TEM appeared to be vacuolated and granular while that of the small lymphocytes appeared to be granular but non-vacuolated. The study concluded that the ultrastructural characteristics of the blood cells of the three breeds of chicken studied were almost similar to the blood cells of other birds reported earlier.


Subject(s)
Chickens , Poultry , Animals , Blood Cells , Leukocytes/ultrastructure , Agriculture
2.
Cells ; 10(12)2021 12 07.
Article in English | MEDLINE | ID: mdl-34943947

ABSTRACT

Intravital microscopy and other direct-imaging techniques have allowed for a characterisation of leukocyte migration that has revolutionised the field of immunology, resulting in an unprecedented understanding of the mechanisms of immune response and adaptive immunity. However, there is an assumption within the field that modern imaging techniques permit imaging parameters where the resulting cell track accurately captures a cell's motion. This notion is almost entirely untested, and the relationship between what could be observed at a given scale and the underlying cell behaviour is undefined. Insufficient spatial and temporal resolutions within migration assays can result in misrepresentation of important physiologic processes or cause subtle changes in critical cell behaviour to be missed. In this review, we contextualise how scale can affect the perceived migratory behaviour of cells, summarise the limited approaches to mitigate this effect, and establish the need for a widely implemented framework to account for scale and correct observations of cell motion. We then extend the concept of scale to new approaches that seek to bridge the current "black box" between single-cell behaviour and systemic response.


Subject(s)
Cell Movement/physiology , Cell Tracking/trends , Leukocytes/physiology , Molecular Imaging/trends , Adaptive Immunity/genetics , Cell Movement/genetics , Humans , Immunity/genetics , Leukocytes/ultrastructure
3.
Front Immunol ; 12: 750537, 2021.
Article in English | MEDLINE | ID: mdl-34867982

ABSTRACT

Motility is a crucial activity of immune cells allowing them to patrol tissues as they differentiate, sample or exchange information, and execute their effector functions. Although all immune cells are highly migratory, each subset is endowed with very distinct motility patterns in accordance with functional specification. Furthermore individual immune cell subsets adapt their motility behaviour to the surrounding tissue environment. This review focuses on how the generation and adaptation of diversified motility patterns in immune cells is sustained by actin cytoskeleton dynamics. In particular, we review the knowledge gained through the study of inborn errors of immunity (IEI) related to actin defects. Such pathologies are unique models that help us to uncover the contribution of individual actin regulators to the migration of immune cells in the context of their development and function.


Subject(s)
Actins/physiology , Leukocytes/physiology , Actins/ultrastructure , Animals , Cell Movement , Humans , Leukocytes/ultrastructure
4.
Sci Rep ; 11(1): 19428, 2021 09 30.
Article in English | MEDLINE | ID: mdl-34593873

ABSTRACT

This article addresses a new method for the classification of white blood cells (WBCs) using image processing techniques and machine learning methods. The proposed method consists of three steps: detecting the nucleus and cytoplasm, extracting features, and classification. At first, a new algorithm is designed to segment the nucleus. For the cytoplasm to be detected, only a part of it located inside the convex hull of the nucleus is involved in the process. This attitude helps us overcome the difficulties of segmenting the cytoplasm. In the second phase, three shapes and four novel color features are devised and extracted. Finally, by using an SVM model, the WBCs are classified. The segmentation algorithm can detect the nucleus with a dice similarity coefficient of 0.9675. The proposed method can categorize WBCs in Raabin-WBC, LISC, and BCCD datasets with accuracies of 94.65%, 92.21%, and 94.20%, respectively. Besides, we show that the proposed method possesses more generalization power than pre-trained CNN models. It is worth mentioning that the hyperparameters of the classifier are fixed only with the Raabin-WBC dataset, and these parameters are not readjusted for LISC and BCCD datasets.


Subject(s)
Image Processing, Computer-Assisted/methods , Leukocytes/ultrastructure , Machine Learning , Humans , Leukocyte Count , Leukocytes/cytology
6.
Comput Math Methods Med ; 2021: 5565156, 2021.
Article in English | MEDLINE | ID: mdl-34335863

ABSTRACT

Accurate counting of leukocytes is an important method for diagnosing human blood diseases. Because most nuclei of neutrophils and eosinophils are polylobar, it is easily confused with the unilobar nuclei in nucleus segmentation. Therefore, it is very essential to accurately identify and determine the polylobar leukocytes. In this paper, a polylobar nucleus identification and extracting method is proposed. Firstly, by using the Otsu threshold and area threshold method, the nuclei of leukocytes are accurately segmented. According to the morphological characteristics of polylobar leukocytes, the edges of the mitotic polylobar leukocytes are detected, and the numbers of polylobar leukocytes are determined according to the minimal distance rule. Therefore, the accurate counting of leukocytes can be realized. From the experimental results, we can see that using the Otsu method and the area threshold to segment the polylobar nuclear leukocytes, the segmentation ratio of the leukocyte nucleus reached 98.3%. After using the morphological features, the polylobar nuclear leukocytes can be accurately counted. The experimental results have verified the feasibility and practicability of the proposed method.


Subject(s)
Cell Nucleus/ultrastructure , Leukocyte Count/methods , Leukocytes/classification , Leukocytes/ultrastructure , Algorithms , Computational Biology , Feasibility Studies , Humans , Image Processing, Computer-Assisted/methods , Image Processing, Computer-Assisted/statistics & numerical data , Leukocyte Count/statistics & numerical data , Software Design
7.
Viruses ; 13(5)2021 05 10.
Article in English | MEDLINE | ID: mdl-34068469

ABSTRACT

Grass carp reovirus (GCRV) causes serious losses to the grass carp industry. At present, infectious tissues of GCRV have been studied, but target cells remain unclear. In this study, peripheral blood cells were isolated, cultured, and infected with GCRV. Using quantitative real-time polymerase chain reaction (qRT-PCR), Western Blot, indirect immunofluorescence, flow cytometry, and transmission electron microscopy observation, a model of GCRV infected blood cells in vitro was established. The experimental results showed GCRV could be detectable in leukocytes only, while erythrocytes and thrombocytes could not. The virus particles in leukocytes are wrapped by empty membrane vesicles that resemble phagocytic vesicles. The empty membrane vesicles of leukocytes are different from virus inclusion bodies in C. idella kidney (CIK) cells. Meanwhile, the expression levels of IFN1, IL-1ß, Mx2, TNFα were significantly up-regulated in leukocytes, indicating that GCRV could cause the production of the related immune responses. Therefore, GCRV can infect leukocytes in vitro, but not infect erythrocytes and thrombocytes. Leukocytes are target cells in blood cells of GCRV infections. This study lays a theoretical foundation for the study of the GCRV infection mechanism and anti-GCRV immunity.


Subject(s)
Carps , Fish Diseases/virology , Leukocytes/virology , Reoviridae Infections/veterinary , Reoviridae/physiology , Animals , Blood Platelets/metabolism , Blood Platelets/ultrastructure , Blood Platelets/virology , Cells, Cultured , Erythrocytes/metabolism , Erythrocytes/ultrastructure , Erythrocytes/virology , Flow Cytometry , Leukocytes/metabolism , Leukocytes/ultrastructure , Reoviridae/ultrastructure , Viral Load
8.
Sci Rep ; 11(1): 10967, 2021 05 26.
Article in English | MEDLINE | ID: mdl-34040069

ABSTRACT

The chronological age of a person is a key determinant of etiology and prognosis in the setting of ischemic stroke. Telomere length, an indicator of biological aging, progressively shortens with every cell cycle. Herein, we determined telomere length from peripheral blood leukocytes by Southern blot analyses in a prospective cohort of ischemic stroke patients (n = 163) and equal number of non-stroke controls and evaluated its association with various ischemic stroke features including etiology, severity, and outcome. A shorter telomere length (i.e. lowest quartile; ≤ 5.5 kb) was significantly associated with ischemic stroke (OR 2.95, 95% CI 1.70-5.13). This significant relationship persisted for all stroke etiologies, except for other rare causes of stroke. No significant association was present between admission lesion volume and telomere length; however, patients with shorter telomeres had higher admission National Institutes of Health Stroke Scale scores when adjusted for chronological age, risk factors, etiology, and infarct volume (p = 0.046). On the other hand, chronological age, but not telomere length, was associated with unfavorable outcome (modified Rankin scale > 2) and mortality at 90 days follow-up. The association between shorter telomere length and more severe clinical phenotype at the time of admission, might reflect reduced resilience of cerebral tissue to ischemia as part of biological aging.


Subject(s)
Brain Ischemia/genetics , Telomere Shortening , Age of Onset , Aged , Aging/genetics , Brain Ischemia/epidemiology , Brain Ischemia/pathology , Case-Control Studies , Chromosomes, Human/ultrastructure , Comorbidity , Female , Genetic Predisposition to Disease , Humans , Leukocytes/ultrastructure , Male , Middle Aged , Phenotype , Prospective Studies , Risk , Risk Factors , Smoking/epidemiology , Turkey/epidemiology
9.
Virchows Arch ; 479(2): 265-275, 2021 Aug.
Article in English | MEDLINE | ID: mdl-33559740

ABSTRACT

Tuberculosis (TB) is the most prevalent bacterial infectious disease in the world, caused by the pathogen Mycobacterium tuberculosis (Mtb). In this study, we have used Mycobacterium marinum (Mm) infection in zebrafish larvae as an animal model for this disease to study the role of the myeloid differentiation factor 88 (Myd88), the key adapter protein of Toll-like receptors. Previously, Myd88 has been shown to enhance innate immune responses against bacterial infections, and in the present study, we have investigated the effect of Myd88 deficiency on the granuloma morphology and the intracellular distribution of bacteria during Mm infection. Our results show that granulomas formed in the tail fin from myd88 mutant larvae have a more compact structure and contain a reduced number of leukocytes compared to the granulomas observed in wild-type larvae. These morphological differences were associated with an increased bacterial burden in the myd88 mutant. Electron microscopy analysis showed that the majority of Mm in the myd88 mutant are located extracellularly, whereas in the wild type, most bacteria were intracellular. In the myd88 mutant, intracellular bacteria were mainly present in compartments that were not electron-dense, suggesting that these compartments had not undergone fusion with a lysosome. In contrast, approximately half of the intracellular bacteria in wild-type larvae were found in electron-dense compartments. These observations in a zebrafish model for tuberculosis suggest a role for Myd88-dependent signalling in two important phenomena that limit mycobacterial growth in the infected tissue. It reduces the number of leukocytes at the site of infection and the acidification of bacteria-containing compartments inside these cells.


Subject(s)
Granuloma/microbiology , Mycobacterium Infections, Nontuberculous/microbiology , Mycobacterium marinum/growth & development , Myeloid Differentiation Factor 88/metabolism , Tuberculosis/microbiology , Zebrafish Proteins/metabolism , Zebrafish/microbiology , Animals , Animals, Genetically Modified , Bacterial Load , Disease Models, Animal , Granuloma/genetics , Granuloma/metabolism , Granuloma/pathology , Hydrogen-Ion Concentration , Leukocytes/metabolism , Leukocytes/microbiology , Leukocytes/ultrastructure , Lysosomes/metabolism , Lysosomes/microbiology , Lysosomes/ultrastructure , Microscopy, Electron, Transmission , Mycobacterium Infections, Nontuberculous/genetics , Mycobacterium Infections, Nontuberculous/metabolism , Mycobacterium Infections, Nontuberculous/pathology , Mycobacterium marinum/ultrastructure , Myeloid Differentiation Factor 88/genetics , Signal Transduction , Tuberculosis/genetics , Tuberculosis/metabolism , Tuberculosis/pathology , Zebrafish/embryology , Zebrafish/genetics , Zebrafish/metabolism , Zebrafish Proteins/genetics
10.
Am J Epidemiol ; 190(7): 1406-1413, 2021 07 01.
Article in English | MEDLINE | ID: mdl-33564874

ABSTRACT

Researchers increasingly wish to test hypotheses concerning the impact of environmental or disease exposures on telomere length (TL), and they use longitudinal study designs to do so. In population studies, TL is usually measured with a quantitative polymerase chain reaction (qPCR)-based method. This method has been validated by calculating its correlation with a gold standard method such as Southern blotting (SB) in cross-sectional data sets. However, in a cross-section, the range of true variation in TL is large, and measurement error is introduced only once. In a longitudinal study, the target variation of interest is small, and measurement error is introduced at both baseline and follow-up. In this paper, we present results from a small data set (n = 20) in which leukocyte TL was measured twice 6.6 years apart by means of both qPCR and SB. The cross-sectional correlations between qPCR and SB were high at both baseline (r = 0.90) and follow-up (r = 0.85), yet their correlation for TL change was poor (r = 0.48). Moreover, the qPCR data but not the SB data showed strong signatures of measurement error. Through simulation, we show that the statistical power gain from performing a longitudinal analysis is much greater for SB than for qPCR. We discuss implications for optimal study design and analysis.


Subject(s)
Blotting, Southern/statistics & numerical data , Correlation of Data , Leukocytes/ultrastructure , Real-Time Polymerase Chain Reaction/statistics & numerical data , Telomere , Cross-Sectional Studies , Humans , Longitudinal Studies , Reproducibility of Results , Research Design
11.
Int J Mol Sci ; 22(2)2021 Jan 08.
Article in English | MEDLINE | ID: mdl-33430160

ABSTRACT

The aim of this study was to develop and evaluate matrix assisted LASER desorption ionization (MALDI) time-of-flight (TOF) mass spectrometry imaging (MSI) of blood smear. Integrated light microscope and MALDI IT-TOF mass spectrometer, together with a matrix sublimation device, were used for analysis of blood smears coming from healthy male donors. Different blood plasma removal, matrix deposition, and instrumental settings were evaluated using the negative and positive ionization modes while agreement between the light microscopy images and the lateral distributions of cellular marker compounds served as the MSI quality indicator. Red and white blood cells chemical composition was analyzed using the differential m/z expression. Five seconds of exposure to ethanol followed by the 5 min of 9-aminoacridine or α-cyano-4-hydroxycinnamic acid deposition, together with two sets of instrumental settings, were selected for the MALDI TOF MSI experiments. Application of the thin and transparent matrix layers assured good correspondence between the LASER footprints and the preselected regions of interest. Cellular marker m/z signals coincided well with the appropriate cells. A metabolite databases search using the differentially expressed m/z produced hits which were consistent with the respective cell types. This study sets the foundations for application of blood smear MALDI TOF MSI in clinical diagnostics and research.


Subject(s)
Biomarkers/blood , Diagnostic Tests, Routine , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Adult , Erythrocytes/ultrastructure , Healthy Volunteers , Humans , Leukocytes/ultrastructure , Male , Young Adult
12.
Int J Cancer ; 148(2): 352-362, 2021 01 15.
Article in English | MEDLINE | ID: mdl-33459354

ABSTRACT

Telomeres play a key role in chromosomal maintenance and stability. To date, few studies have investigated the association of leukocyte telomere length with risk of cancer incidence and all-cause mortality in a large prospective cohort, particularly of the Asian population. Relative telomere lengths in genomic DNA from peripheral blood samples were quantified using a validated quantitative real-time PCR among 26 540 middle-aged or older Chinese adults. Hazard ratios (HRs) and 95% confidence intervals (CIs) of cancer and deaths by quintiles of telomere length were calculated using the Cox proportional hazards regression method with adjustment for age, sex and other potential confounders. After baseline blood collection, 4353 persons developed cancer and 7609 died. Participants with the longest decile of telomeres had a 26% (95% CI: 11%-44%) higher risk of total cancer incidence compared to the shortest decile after controlling for age, sex and other potential founders (Ptrend < .0001). In contrast, longer telomeres were associated with lower risk of all-cause mortality (HR = 0.93; 95% CI: 0.84-1.03), noncancer death (HR = 0.81; 95% CI: 0.71-0.92), specifically, death from chronic obstructive pulmonary disease and pneumonia (HR = 0.79, 95% CI: 0.70-0.89) and digestive diseases (HR = 0.60, 95% CI: 0.42-0.88). Our findings demonstrated that longer telomeres are associated with increased risk of cancer development overall and several common cancer types including breast, rectal, prostate, pancreatic cancer and lung adenocarcinoma. Our study also confirmed that longer telomeres are associated with a reduced risk of noncancer related death.


Subject(s)
Leukocytes/ultrastructure , Neoplasms/mortality , Telomere/genetics , Aged , Asian People , China/ethnology , Cohort Studies , DNA/blood , DNA/genetics , Female , Humans , Incidence , Male , Middle Aged , Neoplasms/blood , Neoplasms/epidemiology , Neoplasms/genetics , Prospective Studies , Singapore/epidemiology
13.
Dig Liver Dis ; 53(7): 879-888, 2021 07.
Article in English | MEDLINE | ID: mdl-33431230

ABSTRACT

BACKGROUND: Microvesicles (MVs) play a role in inflammation, coagulation, and vascular homeostasis in liver disease. AIM: To characterize circulating plasma MVs profile in patients with decompensated cirrhosis and acute kidney injury (AKI). METHODS: We measured the levels of total, endothelial, platelet, tissue factor (TF)+, leukocyte and hepatocyte MVs by new generation flow-cytometry in a prospective cohort of patients with decompensated cirrhosis with and without AKI. RESULTS: Eighty patients with decompensated cirrhosis were recruited (40 each with and without AKI). Patients with cirrhosis with AKI had significantly higher calcein+ (total), endothelial, and platelet-MVs. Conversely, TF+, leukocyte, and hepatocyte-MVs were comparable between groups. Resolution of AKI was associated with significantly decreased total and endothelial-MVs that became comparable with those in patients without AKI. Platelet MVs significantly decreased but remained higher compared to patients without AKI. TF+MVs significantly decreased and became lower than patients without AKI. Leukocyte and hepatocyte-MVs remained unchanged. Creatinine (OR 4.3 [95%CI 1.8-10.7]), MELD (OR 1.13 [95%CI 1.02-1.27]), any bleeding (OR 9.07 [95%CI 2.02-40.6]), and hepatocyte-MVs (OR 1.04 [95%CI 1.02-1.07]) were independently associated with 30-day mortality. CONCLUSION: AKI worsened vascular and cellular homeostasis in patients with cirrhosis, particularly by inducing endothelial dysfunction and platelet activation. AKI did not worsen systemic inflammation and hepatocytes activation.


Subject(s)
Acute Kidney Injury/blood , Cell-Derived Microparticles/metabolism , Liver Cirrhosis/blood , Acute Kidney Injury/etiology , Aged , Biomarkers/blood , Blood Platelets/metabolism , Endothelial Cells/ultrastructure , Female , Hepatocytes/metabolism , Humans , Leukocytes/ultrastructure , Liver Cirrhosis/complications , Male , Middle Aged , Platelet Activation , Prospective Studies , Thromboplastin/metabolism
14.
J Gerontol A Biol Sci Med Sci ; 76(1): 172-175, 2021 01 01.
Article in English | MEDLINE | ID: mdl-33045076

ABSTRACT

BACKGROUND: Telomere attrition has been proposed as a hallmark of aging. We previously reported on the association between blood leukocyte telomere length (LTL) at midlife and risk of chronic diseases and mortality. METHODS: In this study, we investigated the effect of midlife LTL and genetic proxies on 5 markers of aging outcomes, namely handgrip strength, timed up-and-go (TUG), Singapore-modified Mini-Mental State Examination (SM-MMSE) scores, anxiety, and depression indices, measured after a median 20-year follow-up in the Singapore Chinese Health Study (N = 9581). RESULTS: We observed a significant association between midlife LTL and handgrip strength later in life (p = .004, padjust = .020), as well as a nominal significant association between midlife LTL and TUG later in life (p = .036, padjust = .180). The weighted Genetic Risk Score (wGRS) comprising 15 previously reported LTL reducing loci in East Asians was not significantly associated with handgrip strength. However, results from Structural Equation Modeling showed that the effect of this wGRS on handgrip strength was mediated through LTL (proportion of wGRS effect on handgrip strength mediated through LTL = 33.3%, p = .010). CONCLUSIONS: Longer midlife LTL was associated with increased handgrip strength later in life.


Subject(s)
Hand Strength , Leukocytes , Telomere/ultrastructure , Age Factors , Female , Humans , Leukocytes/ultrastructure , Male , Middle Aged , Prospective Studies
15.
Can J Physiol Pharmacol ; 99(3): 278-283, 2021 Mar.
Article in English | MEDLINE | ID: mdl-32687724

ABSTRACT

The telomere length and its distribution were compared between patients administered with and without hypnotics to see if regular administration of hypnotics is associated with their aging-related somatic telomere shortening. Male patients presented significant shortening of telomere length of circulating leukocytes in association with age (-41.9 bp/year, p = 0.045) in contrast with controls (-18.3 kb/year, p = 0.155). On the other hand, female patients presented no significant shortening of telomere length with aging (-16.4 bp/year, p = 0.372) in contrast with controls (-55.9 bp/year, p = 0.00005). These results suggested that regular administration of hypnotics is associated with aging progression in a gender-related manner. The administration of hypnotics could be an indicator as the somatic aging status and for the screening of background lifestyle-associated diseases promoting biological aging.


Subject(s)
Hypnotics and Sedatives/pharmacology , Telomere Shortening/drug effects , Aged , Aged, 80 and over , Aging/drug effects , Female , Humans , Leukocytes/drug effects , Leukocytes/ultrastructure , Life Style , Male , Middle Aged , Sex Characteristics
16.
J Gerontol A Biol Sci Med Sci ; 76(1): 164-171, 2021 01 01.
Article in English | MEDLINE | ID: mdl-32761187

ABSTRACT

BACKGROUND: Telomeres are essential DNA-protein complexes whose attrition results in cellular dysfunction and senescence. Leukocyte telomere length (LTL) correlates with tissue telomere length, representing a biomarker for biological age. However, its predictive value for mortality risk, and for cardiovascular versus cancer deaths, in older adults remains uncertain. METHOD: We studied 3608 community-dwelling men aged 77.0 ± 3.6 years. Leukocyte telomere length was measured using multiplex quantitative PCR, expressed as amount of telomeric DNA relative to single-copy control gene (T/S ratio). Deaths from any cause, cardiovascular disease (CVD), and cancer were ascertained using data linkage. Curve fitting used restricted cubic splines and Cox regression analyses adjusted for age, cardiometabolic risk factors, and prevalent disease. RESULTS: There was a U-shaped association of LTL with all-cause mortality. Men with T/S ratio in the middle quartiles had lower mortality (quartiles, Q2 vs Q1, hazard ratio [HR] = 0.86, 95% confidence interval [CI] 0.77-0.97, p = .012; Q3 vs Q1 HR = 0.88, CI 0.79-0.99, p = .032). There was no association of LTL with CVD mortality. There was a U-shaped association of LTL with cancer mortality. Men with LTL in the middle quartiles had lower risk of cancer death (Q2 vs Q1, HR = 0.73, CI 0.59-0.90, p = .004; Q3 vs Q1, HR = 0.75, CI 0.61-0.92, p = .007). CONCLUSIONS: In older men, both shorter and longer LTL are associated with all-cause mortality. A similar U-shaped association was seen with cancer deaths, with no association found for cardiovascular deaths. Further research is warranted to explore the prognostic utility of LTL in ageing.


Subject(s)
Cardiovascular Diseases/genetics , Cardiovascular Diseases/mortality , Leukocytes , Neoplasms/genetics , Neoplasms/mortality , Telomere/ultrastructure , Aged , Aged, 80 and over , Cause of Death , Cohort Studies , Humans , Leukocytes/ultrastructure , Male
17.
J Hum Genet ; 66(5): 499-507, 2021 May.
Article in English | MEDLINE | ID: mdl-33144663

ABSTRACT

The objective of this study was to evaluate the efficacy of whole exome sequencing (WES) for the genetic diagnosis of cases presenting with fetal structural anomalies detected by ultrasonography. WES was performed on 19 cases with prenatal structural anomalies. Genomic DNA was extracted from umbilical cords or umbilical blood obtained shortly after birth. WES data were analyzed on prenatal phenotypes alone, and the data were re-analyzed after information regarding the postnatal phenotype was obtained. Based solely on the fetal phenotype, pathogenic, or likely pathogenic, single nucleotide variants were identified in 5 of 19 (26.3%) cases. Moreover, we detected trisomy 21 in two cases by WES-based copy number variation analysis. The overall diagnostic rate was 36.8% (7/19). They were all compatible with respective fetal structural anomalies. By referring to postnatal phenotype information, another candidate variant was identified by a postnatal clinical feature that was not detected in prenatal screening. As detailed phenotyping is desirable for better diagnostic rates in WES analysis, we should be aware that fetal phenotype is a useful, but sometimes limited source of information for comprehensive genetic analysis. It is important to amass more data of genotype-phenotype correlations, especially to appropriately assess the validity of WES in prenatal settings.


Subject(s)
Congenital Abnormalities/genetics , Exome Sequencing , Fetus/abnormalities , Ultrasonography, Prenatal , Abortion, Eugenic , Adult , Cesarean Section , Congenital Abnormalities/diagnostic imaging , Congenital Abnormalities/embryology , DNA/blood , DNA/genetics , DNA Copy Number Variations , Down Syndrome/diagnostic imaging , Down Syndrome/embryology , Down Syndrome/genetics , Female , Fetal Blood/chemistry , Fetal Death/etiology , Gestational Age , Humans , Leukocytes/chemistry , Leukocytes/ultrastructure , Polymorphism, Single Nucleotide , Pregnancy , Pregnancy Outcome
18.
PLoS One ; 15(11): e0242364, 2020.
Article in English | MEDLINE | ID: mdl-33237978

ABSTRACT

BACKGROUND: Mitochondria support critical cellular functions, such as energy production through oxidative phosphorylation, regulation of reactive oxygen species, apoptosis, and calcium homeostasis. OBJECTIVE: Given the heightened level of cellular activity in patients with asthma, we sought to determine whether mitochondrial DNA (mtDNA) copy number measured in peripheral blood differed between individuals with and without asthma. METHODS: Whole genome sequence data was generated as part of the Trans-Omics for Precision Medicine (TOPMed) Program on participants from the Study of Asthma Phenotypes and Pharmacogenomic Interactions by Race-ethnicity (SAPPHIRE) and the Study of African Americans, Asthma, Genes, & Environment II (SAGE II). We restricted our analysis to individuals who self-identified as African American (3,651 asthma cases and 1,344 controls). Mitochondrial copy number was estimated using the sequencing read depth ratio for the mitochondrial and nuclear genomes. Respiratory complex expression was assessed using RNA-sequencing. RESULTS: Average mitochondrial copy number was significantly higher among individuals with asthma when compared with controls (SAPPHIRE: 218.60 vs. 200.47, P<0.001; SAGE II: 235.99 vs. 223.07, P<0.001). Asthma status was significantly associated with mitochondrial copy number after accounting for potential explanatory variables, such as participant age, sex, leukocyte counts, and mitochondrial haplogroup. Despite the consistent relationship between asthma status and mitochondrial copy number, the latter was not associated with time-to-exacerbation or patient-reported asthma control. Mitochondrial respiratory complex gene expression was disproportionately lower in individuals with asthma when compared with individuals without asthma and other protein-encoding genes. CONCLUSIONS: We observed a robust association between asthma and higher mitochondrial copy number. Asthma having an effect on mitochondria function was also supported by lower respiratory complex gene expression in this group.


Subject(s)
Asthma/genetics , Black or African American/genetics , DNA Copy Number Variations , DNA, Mitochondrial/genetics , Adult , Asthma/ethnology , Base Sequence , Cohort Studies , DNA, Mitochondrial/blood , Electron Transport Chain Complex Proteins/genetics , Female , Flow Cytometry , Humans , Leukocytes/ultrastructure , Logistic Models , Male , Middle Aged , Proportional Hazards Models , RNA/genetics , Sensitivity and Specificity , Translational Research, Biomedical , Whole Genome Sequencing , Young Adult
19.
Stroke ; 51(12): 3723-3727, 2020 12.
Article in English | MEDLINE | ID: mdl-33138690

ABSTRACT

BACKGROUND AND PURPOSE: We aim to investigate whether histopathologic examination of thrombi retrieved from acute ischemic stroke patients undergoing endovascular treatment could distinguish cancer-related stroke from other etiologies. METHODS: Thrombi from patients undergoing endovascular treatment were analyzed. The etiology of stroke was divided into cardioembolism, large artery atherosclerosis, and active cancer groups. All selected thrombi were subjected to hematoxylin and eosin staining. The percentages of fibrin/platelets, red blood cells, and white blood cells within a thrombus were quantified. RESULTS: One-hundred fifty-two patients (active cancer, 19; cardioembolism, 107; large artery atherosclerosis, 26) were included. Thrombi from the active cancer group exhibited a higher fibrin/platelet composition than did those from the cardioembolism and large artery atherosclerosis groups (median, 85.7% versus 43.9% and 42.5%; P<0.001). Fibrin/platelet composition was the only independent factor (odds ratio, 1.05 [95% CI, 1.02-1.08]) in differentiating cancer-related stroke from stroke caused by cardioembolism and large artery atherosclerosis. A fibrin/platelet proportion of ≥65% accurately predicted cancer-related stroke (area under the curve, 0.84; P<0.001). CONCLUSIONS: In thrombi retrieved from patients undergoing endovascular treatment, a high fibrin/platelet composition was a probable indicator of cancer-related stroke.


Subject(s)
Blood Platelets/pathology , Embolic Stroke/pathology , Erythrocytes/pathology , Fibrin/ultrastructure , Leukocytes/pathology , Neoplasms/complications , Thrombotic Stroke/pathology , Aged , Aged, 80 and over , Blood Platelets/ultrastructure , Embolic Stroke/surgery , Endovascular Procedures , Erythrocytes/ultrastructure , Female , Humans , Ischemic Stroke/etiology , Ischemic Stroke/pathology , Ischemic Stroke/surgery , Leukocytes/ultrastructure , Male , Middle Aged , Multivariate Analysis , Thrombectomy , Thrombosis/etiology , Thrombosis/pathology , Thrombosis/surgery , Thrombotic Stroke/etiology , Thrombotic Stroke/surgery
20.
Appl Spectrosc ; 74(12): 1463-1472, 2020 Dec.
Article in English | MEDLINE | ID: mdl-32519582

ABSTRACT

Characteristics of five subpopulation leukocytes in single-cell levels based on partial principal component analysis coupled with Raman spectroscopy were proposed to recognize the biochemical features of five subpopulation leukocytes. Using wavelet transform, the reconstructed spectra of the low-frequency wavelet coefficients were used to perform multiple principal component analysis based on segmented spectral data wreathing cover at 720-800 cm-1, 840-994 cm-1, and 1010-1070 cm-1 wavenumbers, respectively. Our approach is promising since it enables to establish a better understanding of the underlying molecular difference between the subtypes of leukocytes in a label-free manner and to estimate the source of infection.


Subject(s)
Leukocytes , Principal Component Analysis/methods , Single-Cell Analysis/methods , Spectrum Analysis, Raman/methods , Cell Differentiation , Humans , Leukocytes/cytology , Leukocytes/ultrastructure
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