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1.
J Mol Biol ; 434(20): 167797, 2022 10 30.
Article in English | MEDLINE | ID: mdl-35998704

ABSTRACT

Many single-stranded, positive-sense RNA viruses regulate assembly of their infectious virions by forming multiple, cognate coat protein (CP)-genome contacts at sites termed Packaging Signals (PSs). We have determined the secondary structures of the bacteriophage MS2 ssRNA genome (gRNA) frozen in defined states using constraints from X-ray synchrotron footprinting (XRF). Comparison of the footprints from phage and transcript confirms the presence of multiple PSs in contact with CP dimers in the former. This is also true for a virus-like particle (VLP) assembled around the gRNA in vitro in the absence of the single-copy Maturation Protein (MP) found in phage. Since PS folds are present at many sites across gRNA transcripts, it appears that this genome has evolved to facilitate this mechanism of assembly regulation. There are striking differences between the gRNA-CP contacts seen in phage and the VLP, suggesting that the latter are inappropriate surrogates for aspects of phage structure/function. Roughly 50% of potential PS sites in the gRNA are not in contact with the protein shell of phage. However, many of these sit adjacent to, albeit not in contact with, PS-binding sites on CP dimers. We hypothesize that these act as PSs transiently during assembly but subsequently dissociate. Combining the XRF data with PS locations from an asymmetric cryo-EM reconstruction suggests that the genome positions of such dissociations are non-random and may facilitate infection. The loss of many PS-CP interactions towards the 3' end of the gRNA would allow this part of the genome to transit more easily through the narrow basal body of the pilus extruding machinery. This is the known first step in phage infection. In addition, each PS-CP dissociation event leaves the protein partner trapped in a non-lowest free-energy conformation. This destabilizes the protein shell which must disassemble during infection, further facilitating this stage of the life-cycle.


Subject(s)
Capsid Proteins , Levivirus , Virus Assembly , Capsid Proteins/chemistry , Genome, Viral/genetics , Levivirus/chemistry , Levivirus/pathogenicity , Levivirus/physiology , RNA, Viral/genetics , Virus Assembly/genetics
2.
Viruses ; 13(7)2021 07 15.
Article in English | MEDLINE | ID: mdl-34372580

ABSTRACT

Most of the defective/non-infectious enteric phages and viruses that end up in wastewater originate in human feces. Some of the causes of this high level of inactivity at the host stage are unknown. There is a significant gap between how enteric phages are environmentally transmitted and how we might design molecular tools that would only detect infectious ones. Thus, there is a need to explain the low proportion of infectious viral particles once replicated. By analyzing lysis plaque content, we were able to confirm that, under aerobic conditions, Escherichia coli produce low numbers of infectious MS2 phages (I) than the total number of phages indicated by the genome copies (G) with an I/G ratio of around 2%. Anaerobic conditions of replication and ROS inhibition increase the I/G ratio to 8 and 25%, respectively. These data cannot only be explained by variations in the total numbers of MS2 phages produced or in the metabolism of E. coli. We therefore suggest that oxidative damage impacts the molecular replication and assembly of MS2 phages.


Subject(s)
Anaerobiosis/physiology , Levivirus/metabolism , Virus Replication/physiology , Aerobiosis/physiology , Coliphages/genetics , Escherichia coli/metabolism , Escherichia coli/virology , Escherichia coli Proteins/metabolism , Feces/virology , Humans , Levivirus/pathogenicity , Reactive Oxygen Species/metabolism , Virulence
3.
J Aerosol Med Pulm Drug Deliv ; 34(5): 293-302, 2021 09.
Article in English | MEDLINE | ID: mdl-33761275

ABSTRACT

Background: The precaution of airborne transmission of viruses, such as influenza, SARS, MERS, and COVID-19, is essential for reducing infection. In this study, we applied a zero-valent nanosilver/titania-chitosan (nano-Ag0/TiO2-CS) filter bed, whose broad-spectrum antimicrobial efficacy has been proven previously, for the removal of viral aerosols to minimize the risk of airborne transmission. Methods: The photochemical deposition method was used to synthesize the nano-Ag0/TiO2-CS antiviral material. The surface morphology, elemental composition, and microstructure of the nano-Ag0/TiO2-CS were analyzed by a scanning electron microscopy/energy dispersive X-ray spectroscopy and a transmission electron microscopy, respectively. The MS2 bacteriophages were used as surrogate viral aerosols. The antiviral efficacy of nano-Ag0/TiO2-CS was evaluated by the MS2 plaque reduction assay (PRA) and filtration experiments. In the filtration experiments, the MS2 aerosols passed through the nano-Ag0/TiO2-CS filter, and the MS2 aerosol removal efficiency was evaluated by an optical particle counter and culture method. Results and Conclusions: In the MS2 PRA, 3 g of nano-Ag0/TiO2-CS inactivated 97% of MS2 bacteriophages in 20 mL liquid culture (2 ± 0.5 × 1016 PFU/mL) within 2 hours. The removal efficiency of nano-Ag0/TiO2-CS filter (thickness: 6 cm) for MS2 aerosols reached up to 93%. Over 95% of MS2 bacteriophages on the surface of the nano-Ag0/TiO2-CS filter were inactivated within 20 minutes. The Wells-Riley model predicted that when the nano-Ag0/TiO2-CS filter was used in the ventilation system, airborne infection probability would reduce from 99% to 34.6%. The nano-Ag0/TiO2-CS filter could remain at 50% of its original antiviral efficiency after continuous operation for 1 week, indicating its feasibility for the control of the airborne transmission.


Subject(s)
Air Filters , Air Microbiology , Chitosan/chemistry , Filtration/instrumentation , Inhalation Exposure/prevention & control , Levivirus/isolation & purification , Metal Nanoparticles , Silver/chemistry , Titanium/chemistry , Aerosols , COVID-19/prevention & control , COVID-19/transmission , Equipment Design , Humans , Inhalation Exposure/adverse effects , Levivirus/pathogenicity , SARS-CoV-2/isolation & purification , SARS-CoV-2/pathogenicity
4.
Nat Commun ; 11(1): 6009, 2020 11 26.
Article in English | MEDLINE | ID: mdl-33243984

ABSTRACT

Leviviruses are bacteriophages with small single-stranded RNA genomes consisting of 3-4 genes, one of which (sgl) encodes a protein that induces the host to undergo autolysis and liberate progeny virions. Recent meta-transcriptomic studies have uncovered thousands of leviviral genomes, but most of these lack an annotated sgl, mainly due to the small size, lack of sequence similarity, and embedded nature of these genes. Here, we identify sgl genes in 244 leviviral genomes and functionally characterize them in Escherichia coli. We show that leviviruses readily evolve sgl genes and sometimes have more than one per genome. Moreover, these genes share little to no similarity with each other or to previously known sgl genes, thus representing a rich source for potential protein antibiotics.


Subject(s)
Bacteriolysis/genetics , Evolution, Molecular , Genes, Viral/genetics , Levivirus/genetics , Viral Proteins/metabolism , Escherichia coli/virology , Levivirus/pathogenicity , Mutagenesis, Site-Directed , Mutation , RNA, Viral/genetics , Viral Proteins/genetics
5.
Food Environ Virol ; 6(4): 260-8, 2014 Dec.
Article in English | MEDLINE | ID: mdl-24952878

ABSTRACT

Disinfection by low-pressure monochromatic ultraviolet (UVC) radiation (253.7 nm) became an important technique to sanitize drinking water and also wastewater in tertiary treatments. In order to prevent the transmission of waterborne viral diseases, the analysis of the disinfection kinetics and the quantification of infectious viral pathogens and indicators are highly relevant and need to be addressed. The families Adenoviridae and Polyomaviridae comprise human and animal pathogenic viruses that have been also proposed as indicators of fecal contamination in water and as Microbial Source Tracking tools. While it has been previously suggested that dsDNA viruses may be highly resistant to UVC radiation compared to other viruses or bacteria, no information is available on the stability of polyomavirus toward UV irradiation. Here, the inactivation of dsDNA (HAdV2 and JCPyV) and ssRNA (MS2 bacteriophage) viruses was analyzed at increasing UVC fluences. A minor decay of 2-logs was achieved for both infectious JC polyomaviruses (JCPyV) and human adenoviruses 2 (HAdV2) exposed to a UVC fluence of 1,400 J/m(2), while a decay of 4-log was observed for MS2 bacteriophages (ssRNA). The present study reveals the high UVC resistance of dsDNA viruses, and the UV fluences needed to efficiently inactivate JCPyV and HAdV2 are predicted. Furthermore, we show that in conjunction with appropriate mathematical models, qPCR data may be used to accurately estimate virus infectivity.


Subject(s)
Adenoviridae/radiation effects , DNA, Viral/radiation effects , Disinfection/methods , Polyomaviridae/radiation effects , RNA, Viral/radiation effects , Adenoviridae/metabolism , Adenoviridae/pathogenicity , Adenoviridae/ultrastructure , Adenoviruses, Human/metabolism , Adenoviruses, Human/pathogenicity , Adenoviruses, Human/radiation effects , Adenoviruses, Human/ultrastructure , Cell Line , DNA, Viral/metabolism , Humans , JC Virus/metabolism , JC Virus/pathogenicity , JC Virus/radiation effects , JC Virus/ultrastructure , Kinetics , Levivirus/metabolism , Levivirus/pathogenicity , Levivirus/radiation effects , Levivirus/ultrastructure , Microbial Viability/radiation effects , Microscopy, Electron, Transmission , Polyomaviridae/metabolism , Polyomaviridae/pathogenicity , Polyomaviridae/ultrastructure , RNA Stability/radiation effects , RNA, Viral/metabolism , Radiation Tolerance , Real-Time Polymerase Chain Reaction , Reverse Transcriptase Polymerase Chain Reaction , Ultraviolet Rays , Virion/metabolism , Virion/pathogenicity , Virion/radiation effects , Virion/ultrastructure , Virus Inactivation/radiation effects
6.
Anal Biochem ; 444: 22-4, 2014 Jan 01.
Article in English | MEDLINE | ID: mdl-24055749

ABSTRACT

Plaque analysis allows the determination of phage titer and multiplicity of infection. Yet, this overnight assay provides only endpoint results, ignoring kinetic aspects. We introduce an alternative high-throughput and rapid method for kinetic analysis of lytic coliphage activity. Escherichia coli was infected with serial dilutions of MS2 coliphage, and bacterial growth was monitored using a multi-well plate reader providing within hours the equivalent data as obtained overnight. Additional information is yielded, including phage replication rate, progeny size per cycle, and viral propagation during bacterial growth. This method offers further insights into physicochemical mechanisms of lytic coliphage infection and temporal control. It also provides a virus-host interaction acumen.


Subject(s)
Escherichia coli/virology , High-Throughput Screening Assays , Levivirus/physiology , Escherichia coli/growth & development , Kinetics , Levivirus/growth & development , Levivirus/pathogenicity , Time Factors
7.
Environ Sci Technol ; 45(16): 6978-84, 2011 Aug 15.
Article in English | MEDLINE | ID: mdl-21726084

ABSTRACT

This study demonstrates the inactivation of MS2 coliphage (MS2) by nano particulate zerovalent iron (nZVI) and ferrous ion (Fe[II]) in aqueous solution. For nZVI, the inactivation efficiency of MS2 under air-saturated conditions was greater than that observed under deaerated conditions, indicating that reactions associated with the oxidation of nZVI were mainly responsible for the MS2 inactivation. Under air-saturated conditions, the inactivation efficiency increased with decreasing pH for both nZVI and Fe(II), associated with the pH-dependent stability of Fe(II). Although the Fe(II) released from nZVI appeared to contribute significantly to the virucidal activity of nZVI, several findings suggest that the nZVI surfaces interacted directly with the MS2 phages, leading to their inactivation. First, the addition of 1,10-phenanthroline (a strong Fe(II)-chelating agent) failed to completely block the inactivation of MS2 by nZVI. Second, under deaerated conditions, a linear dose-log inactivation curve was still observed for nZVI. Finally, ELISA analysis indicated that nZVI caused more capsid damage than Fe(II).


Subject(s)
Iron/pharmacology , Levivirus/drug effects , Levivirus/physiology , Metal Nanoparticles/chemistry , Virus Inactivation/drug effects , Air , Antigens, Viral/immunology , Enzyme-Linked Immunosorbent Assay , Hydrogen-Ion Concentration/drug effects , Levivirus/immunology , Levivirus/pathogenicity , Methanol/pharmacology , Phenanthrolines/pharmacology , RNA, Viral/genetics , Reverse Transcriptase Polymerase Chain Reaction , Time Factors , Virus Cultivation
8.
Foodborne Pathog Dis ; 8(11): 1177-83, 2011 Nov.
Article in English | MEDLINE | ID: mdl-21777065

ABSTRACT

Pomegranate juice (PJ) and pomegranate polyphenolic extracts (PP) have antiviral effects against HIV-1, influenza, herpes, and poxviruses, and we recently demonstrated their effect against human noroviral surrogates. In the present study, the time-dependent effects of two commercial brands of PJ and PP at two concentrations (2 and 4 mg/mL) on the infectivity of foodborne viral surrogates (feline calicivirus FCV-F9, murine norovirus MNV-1, and MS2 bacteriophage) at room temperature for up to 1 h were evaluated. Each virus at ∼5 log(10) plaque-forming units (PFU)/mL was mixed with equal volumes of PJ, or PP at 4 or 8 mg/mL, and incubated for 0, 10, 20, 30, 45, and 60 min at room temperature. Viral titers after each treatment were determined by standardized plaque assays and compared with untreated controls. Virus titer reduction by PJ and PP was found to be a rather rapid process, with ≥50% of titer reduction occurring within the first 20 min of treatment for all three tested viruses. Within the first 20 min, titer reductions of 3.12, 0.79, and 0.23 log(10) PFU/mL for FCV-F9, MNV-1, and MS2, respectively, were obtained using PJ. FCV-F9, MNV-1, and MS2 titers were reduced by 4.02, 0.68, and 0.18 log(10) PFU/mL with 2 mg/mL PP and 5.09, 1.14, and 0.19 log(10) PFU/mL with 4 mg/mL PP, respectively, after 20 min. The mechanism of viral reduction by PJ and PP needs to be elucidated and clinical trials should be undertaken before recommending for therapeutic or preventive purposes.


Subject(s)
Antiviral Agents/pharmacology , Beverages , Calicivirus, Feline/drug effects , Lythraceae/chemistry , Norovirus/drug effects , Polyphenols/pharmacology , Animals , Calicivirus, Feline/pathogenicity , Cats , Cell Line , Escherichia coli , Foodborne Diseases/prevention & control , Foodborne Diseases/virology , Humans , Hydrogen-Ion Concentration , Levivirus/drug effects , Levivirus/pathogenicity , Mice , Norovirus/pathogenicity , Time Factors , Viral Load , Viral Plaque Assay
9.
ACS Appl Mater Interfaces ; 3(7): 2209-14, 2011 Jul.
Article in English | MEDLINE | ID: mdl-21667949

ABSTRACT

The antiviral activities of poly(phenylene ethynylene) (PPE)-based cationic conjugated polyelectrolytes (CPE) and oligo-phenylene ethynylenes (OPE) were investigated using two model viruses, the T4 and MS2 bacteriophages. Under UV/visible light irradiation, significant antiviral activity was observed for all of the CPEs and OPEs; without irradiation, most of these compounds exhibited high inactivation activity against the MS2 phage and moderate inactivation ability against the T4 phage. Transmission electron microscopy (TEM) and SDS polyacrylamide gel electrophoresis (SDS-PAGE) reveal that the CPEs and OPEs exert their antiviral activity by partial disassembly of the phage particle structure in the dark and photochemical damage of the phage capsid protein under UV/visible light irradiation.


Subject(s)
Alkynes/pharmacology , Antiviral Agents/pharmacology , Bacteriophage T4/drug effects , Ethers/pharmacology , Levivirus/drug effects , Polymers/pharmacology , Alkynes/chemistry , Antiviral Agents/chemistry , Bacteriophage T4/pathogenicity , Bacteriophage T4/ultrastructure , Cations , Cytopathogenic Effect, Viral , Ethers/chemistry , Levivirus/pathogenicity , Levivirus/ultrastructure , Microscopy, Electron, Transmission , Polymers/chemistry , Ultraviolet Rays
10.
Foodborne Pathog Dis ; 8(9): 1005-10, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21457050

ABSTRACT

Free chlorine as hypochlorite is recommended to decontaminate fecally contaminated surfaces to control human norovirus (NoV). We evaluated the efficacy of sodium hypochlorite to decontaminate GII.4 NoV and three surrogates of human NoVs, feline calicivirus (FCV), murine norovirus (MNV), and coliphage MS2, on a fecally soiled stainless steel surface. Reduction of infectivity of FCV, MNV, and MS2 was measured by plaque assay and the decline of genomic copy numbers of GII.4 NoV by reverse transcriptase-polymerase chain reaction. Sodium hypochlorite solution at 5000 ppm could inactivate FCV by 3 log(10) plaque forming units after approximately 1.9 minutes of contact time, but required longer exposure times of 3.2 and 4.5 minutes to reduce MNV and MS2 by 3 log(10), respectively. However, detection of viral RNA by reverse transcriptase-polymerase chain reaction assay may not be reliable to estimate the effectiveness of sodium hypochlorite against human NoV. Of three NoV surrogates, FCV is not the most resistant of the virus tested for inactivation by hypochlorite and thus is not the worst-case model for estimating NoV inactivation. Although the use of 5000 ppm of hypochlorite for fecally soiled surfaces is effective, it may require longer exposure times of ≥3 minutes to control NoVs. Surface precleaning before hypochlorite disinfection is recommended to initially reduce the fecal organic load for better virus inactivation and should be a part of the environmental hygiene response measures during an NoV outbreak or where NoV fecal contamination of environmental surfaces is likely or suspected to be present.


Subject(s)
Antiviral Agents/pharmacology , Calicivirus, Feline/drug effects , Disinfectants/pharmacology , Feces/virology , Leviviridae/drug effects , Norovirus/drug effects , Sodium Hypochlorite/pharmacology , Calicivirus, Feline/growth & development , Calicivirus, Feline/isolation & purification , Calicivirus, Feline/pathogenicity , Drug Resistance, Viral , Environmental Microbiology , Gene Dosage , Humans , Kinetics , Leviviridae/growth & development , Leviviridae/isolation & purification , Leviviridae/pathogenicity , Levivirus/drug effects , Levivirus/growth & development , Levivirus/isolation & purification , Levivirus/pathogenicity , Norovirus/genetics , Norovirus/isolation & purification , Norovirus/pathogenicity , Osmolar Concentration , Reverse Transcriptase Polymerase Chain Reaction , Stainless Steel , Surface Properties , Viral Plaque Assay , Virology/methods , Virus Inactivation/drug effects
11.
Environ Sci Technol ; 45(6): 2257-63, 2011 Mar 15.
Article in English | MEDLINE | ID: mdl-21322644

ABSTRACT

Measuring the efficiency of virus disinfection with quantitative PCR (qPCR) has been criticized as inadequate due to the production of false-positive signals. Such a claim, however, presupposes an understanding of the theoretical qPCR response. Many studies have assumed that the loss in qPCR signal upon disinfection should equal the loss in infectivity, without accounting for the fact that qPCR typically assays only a fraction of the viral genome. This study aimed to develop a theoretical framework to relate viral infectivity with genome damage measured by qPCR. The framework quantified damage to the entire genome based on the qPCR amplification of smaller sections, assuming single-hit inactivation and a Poissonian distribution of damage. The framework was tested and modified using UV(254) inactivation studies with bacteriophage MS2 (culturing and qPCR of approximately half the genome). Genome regions showed heterogeneous sensitivities to UV(254) treatment, thus deviating from the assumption of Poissonian damage. We offered two modifications to account for these deviations and confirmed that the qPCR-based framework accurately estimated virus infectivity. This framework offers the potential to monitor the infectivity of viruses that remain nonculturable (norovirus). While developed for UV(254)-inactivated virus, the framework should apply to any disinfection technique that causes inactivation via single genomic lesions.


Subject(s)
Levivirus/pathogenicity , Polymerase Chain Reaction , Virus Inactivation , DNA Damage , Levivirus/genetics , Ultraviolet Rays , Virus Cultivation , Water Microbiology
12.
Water Res ; 41(11): 2393-406, 2007 Jun.
Article in English | MEDLINE | ID: mdl-17433406

ABSTRACT

This bench-scale study investigated the passage of particle-associated bacteriophage through a dual-media (anthracite-sand) filter over a complete filter cycle and the effect on subsequent ultraviolet (UV) disinfection. Two model viruses, bacteriophages MS2 and T4, were considered. The water matrix was de-chlorinated tap water with either kaolin or Aldrich humic acid (AHA) added and coagulated with alum to form floc before filtration. The turbidity of the influent flocculated water was 6.4+/-1.5 NTU. Influent and filter effluent turbidity and particle counts were measured as well as headloss across the filter media. Filter effluent samples were collected for phage enumeration during three filter cycle stages: (i) filter ripening; (ii) stable operation; and (iii) end of filter cycle. Stable filter operation was defined according to a filter effluent turbidity goal of <0.3 NTU. Influent and filter effluent samples were subsequently exposed to UV light (254 nm) at 40 mJ/cm(2) using a low pressure UV collimated beam. The study found statistically significant differences (alpha=0.05) in the quantity of particle-associated phage present in the filter effluent during the three stages of filtration. There was reduced UV disinfection efficiency due to the presence of particle-associated phage in the filter effluent in trials with bacteriophage MS2 and humic acid floc. Unfiltered influent water samples also resulted in reduced UV inactivation of phage relative to particle-free control conditions for both phages. Trends in filter effluent turbidity corresponded with breakthrough of particle-associated phage in the filter effluent. The results therefore suggest that maintenance of optimum filtration conditions upstream of UV disinfection is a critical barrier to particle-associated viruses.


Subject(s)
Bacteriophage T4/radiation effects , Disinfection/methods , Filtration/methods , Levivirus/radiation effects , Ultraviolet Rays , Water Microbiology , Water Purification/methods , Alum Compounds/chemistry , Bacteriophage T4/isolation & purification , Bacteriophage T4/pathogenicity , Disinfection/instrumentation , Flocculation , Humic Substances , Kaolin , Levivirus/isolation & purification , Levivirus/pathogenicity , Nephelometry and Turbidimetry , Particle Size , Time Factors , Water Purification/instrumentation
13.
Appl Environ Microbiol ; 72(12): 7671-7, 2006 Dec.
Article in English | MEDLINE | ID: mdl-17041164

ABSTRACT

Several models (animal caliciviruses, poliovirus 1 [PV1], and F-specific RNA bacteriophages) are usually used to predict inactivation of nonculturable viruses. For the same UV fluence, viral inactivation observed in the literature varies from 0 to 5 logs according to the models and the methods (infectivity versus molecular biology). The lack of knowledge concerning the mechanisms of inactivation due to UV prevents us from selecting the best model. In this context, determining if viral genome degradation may explain the loss of infectivity under UV radiation becomes essential. Thus, four virus models (PV1 and three F-specific RNA phages: MS2, GA, and Qbeta) were exposed to UV radiation from 0 to 150 mJ.cm-2. PV1 is the least-resistant virus, while MS2 and GA phages are the most resistant, with phage Qbeta having an intermediate sensitivity; respectively, 6-log, 2.3-log, 2.5-log, and 4-log decreases for 50 mJ.cm-2. In parallel, analysis of RNA degradation demonstrated that this phenomenon depends on the fragment size for PV1 as well as for MS2. Long fragments (above 2,000 bases) for PV1 and MS2 fell rapidly to the background level (>1.3-log decrease) for 20 mJ.cm-2 and 60 mJ.cm-2, respectively. Nevertheless, the size of the viral RNA is not the only factor affecting UV-induced RNA degradation, since viral RNA was more rapidly degraded in PV1 than in the MS2 phage with a similar size. Finally, extrapolation of inactivation and UV-induced RNA degradation kinetics highlights that genome degradation could fully explain UV-induced viral inactivation.


Subject(s)
Allolevivirus/radiation effects , Genome, Viral/radiation effects , Levivirus/radiation effects , Poliovirus/radiation effects , Ultraviolet Rays , Virus Inactivation/radiation effects , Allolevivirus/pathogenicity , Animals , Cell Line , Dose-Response Relationship, Radiation , Humans , Levivirus/pathogenicity , Poliovirus/pathogenicity , Poliovirus Vaccine, Oral , RNA, Viral/radiation effects
14.
Environ Sci Technol ; 40(10): 3237-42, 2006 May 15.
Article in English | MEDLINE | ID: mdl-16749687

ABSTRACT

Static and dynamic batch experiments were conducted to study the effects of temperature and the presence of sand on the inactivation of bacteriophage MS2 and PRD1. The experimental data suggested that the inactivation process can be satisfactorily represented by a pseudo-first-order expression with time-dependent rate coefficients. The time-dependent rate coefficients were used to determine pertinent thermodynamic properties required for the analysis of the molecular processes involved in the inactivation of each bacteriophage. A combination of high temperature and the presence of sand appears to produce the greatest disruption to the surrounding protein coat of MS2. However, the lower activation energies for PRD1 indicate a weaker dependence of the inactivation rate on temperature. Instead, the presence of air-liquid and air-solid interfaces appears to produce the greatest damage to specific viral components that are related to infection. These results indicate the importance of using thermodynamic parameters based on the time-dependent inactivation model to better predict the inactivation of viruses in groundwater.


Subject(s)
Bacteriophage PRD1/physiology , Environmental Monitoring , Levivirus/physiology , Sewage/virology , Virus Inactivation , Water Microbiology , Air , Animals , Bacteriophage PRD1/pathogenicity , Kinetics , Levivirus/pathogenicity , Thermodynamics , Water Supply
15.
Water Res ; 39(15): 3487-500, 2005 Sep.
Article in English | MEDLINE | ID: mdl-16081130

ABSTRACT

This study investigated whether colloid-sized particles can enmesh and protect viruses from 254-nm ultraviolet (UV) light and sought to determine the particle characteristics (e.g. size, chemical composition) that are most relevant in causing a protective effect. Two viral surrogates (MS2 coliphage and bacteriophage T4), three types of particles (kaolin clay, humic acid powder, and activated sludge), two coagulants (alum and ferric chloride), two filtration conditions (none and 0.45 microm), and two UV doses (40 and 80 mJ/cm2 for MS2 coliphage; 2 and 7 mJ/cm2 for bacteriophage T4) were considered in a series of bench-scale UV collimated beam experiments. Transmission electron microscopy was used to qualitatively confirm the phage particle-association after coagulation. Humic acid and activated sludge floc particles shielded both viral surrogates to a statistically significant degree (with >99% confidence) relative to particle-free control conditions, while the kaolin clay particles provided no significant protection. The results of the study suggest that particles <2 microm in diameter are large enough to protect viruses from UV light and that particulate chemical composition (e.g. UV-absorbing organic content) may be a critical factor in the survival of particle-associated viruses during UV disinfection.


Subject(s)
Bacteriophage T4/radiation effects , Disinfection , Levivirus/radiation effects , Ultraviolet Rays , Water Purification/methods , Alum Compounds/chemistry , Bacteriophage T4/isolation & purification , Bacteriophage T4/pathogenicity , Chlorides , Colloids , Ferric Compounds/chemistry , Flocculation , Humic Substances , Kaolin , Levivirus/isolation & purification , Levivirus/pathogenicity , Microscopy, Electron, Transmission , Particle Size , Sewage , Water Microbiology
16.
Water Res ; 39(15): 3643-9, 2005 Sep.
Article in English | MEDLINE | ID: mdl-16046229

ABSTRACT

Adenoviruses are among the most resistant waterborne pathogens to UV disinfection, yet of the 51 serologically distinct human adenoviruses, only a few have been evaluated for their sensitivities to UV irradiation. Human enteric adenoviruses (Ad40 and Ad41) are difficult to cultivate and reliably assay for infectivity, requiring weeks to obtain cytopathogenic effects (CPE). Inoculated cell cultures often deteriorate before the appearance of distinctive CPE making it difficult to obtain reliable and reproducible data regarding UV inactivation. Adenovirus is a double-stranded DNA virus and produces messenger RNA (mRNA) during replication in host cells. The presence of viral mRNA in host cells is definitive evidence of infection. We recently developed a rapid and reliable cell culture-mRNA RT-PCR assay to detect and quantify adenovirus infectivity. Viral mRNA recovered from cell cultures 5-7 days after infection was purified on oligo-dT latex, treated with DNase, and amplified by RT-PCR using the primers specific for a conserved region of the hexon late mRNA transcript. Treatment of approximately 10(4) Ad41 with different doses of 254 nm germicidal UV radiation resulted in a dose-dependent loss of infectivity. As UV doses were increased from 75 to 200 mJ/cm2, virus survival decreased and no virus infectivity (measured by detectable mRNA) was found at a dose of 225 mJ/cm2 or higher. Our results using the cell culture mRNA RT-PCR assay indicate that Ad41 is more resistant to UV radiation than in a previous study using a conventional cell culture infectivity assay. Results were more similar to those found for Ad 40 using CPE as a measure of infectivity in another previous study.


Subject(s)
Adenoviruses, Human/radiation effects , Environmental Monitoring/methods , RNA, Viral/analysis , Ultraviolet Rays , Virus Inactivation/radiation effects , Adenoviruses, Human/genetics , Adenoviruses, Human/pathogenicity , Cell Line , Disinfection , Escherichia coli/virology , Humans , Levivirus/pathogenicity , Levivirus/radiation effects , RNA, Messenger/analysis , Reverse Transcriptase Polymerase Chain Reaction , Water Pollutants/radiation effects
17.
Water Res ; 39(8): 1519-26, 2005 Apr.
Article in English | MEDLINE | ID: mdl-15878023

ABSTRACT

The relative disinfection efficiencies of peracetic acid (PAA), hydrogen peroxide (H2O2) and sodium hypochlorite (NaOCl) against Escherichia coli, Enterococcus faecalis, Salmonella enteritidis and coliphage MS2 virus were studied in laboratory-scale experiments. This study also evaluated the efficiency of combined PAA/ultraviolet irradiation (UV) and H2O2/UV treatments to determine if the microbial inactivation was synergistic. Microbial cultures were added into a synthetic wastewater-like test medium and treated by chemical disinfectants with a 10 min contact time, UV irradiation or the combination of chemical and UV treatments. A peracetic acid dose of 3 mg/l resulted in approximately 2-3 log enteric bacterial reductions, whereas 7-15 mg/l PAA was needed to achieve 1-1.5 log coliphage MS2 reductions. Doses of 3-150 mg/l hydrogen peroxide achieved below 0.2 log microbial reductions. Sodium hypochlorite treatments caused 0.3-1 log microbial reductions at an 18 mg/l chlorine dose, while 2.6 log reductions of E. faecalis were achieved at a 12 mg/l chlorine dose. The results indicate that PAA could represent a good alternative to chlorine compounds in disinfection procedures, especially in wastewaters containing easily oxidizable organic matter. Hydrogen peroxide is not an efficient disinfectant against enteric microorganisms in wastewaters. The combined PAA/UV disinfection showed increased disinfection efficiency and synergistic benefits with all the enteric bacteria tested but lower synergies for the coliphage MS2. This suggests that this method could improve the efficiency and reliability of disinfection in wastewater treatment plants. The combined H2O2/UV disinfection only slightly influenced the microbial reductions compared to UV treatments and showed some antagonism and no synergies.


Subject(s)
Disinfectants/chemistry , Disinfection/methods , Peracetic Acid/chemistry , Sodium Hypochlorite/chemistry , Ultraviolet Rays , Water Purification/methods , Enterococcus faecalis/pathogenicity , Escherichia coli/pathogenicity , Hydrogen Peroxide/chemistry , Levivirus/pathogenicity , Oxidants/chemistry , Salmonella enteritidis/pathogenicity
18.
Water Sci Technol ; 50(1): 19-25, 2004.
Article in English | MEDLINE | ID: mdl-15318481

ABSTRACT

Effective wastewater treatment is critical to public health and well-being. This is especially true in developing countries, where disinfection of wastewater is frequently inadequate. People who live in these areas may benefit from wastewater disinfection using ozone. This study evaluated the ability of a new electrochemical process of ozone generation, which produced ozone continuously at high pressure and concentration by the electrolysis of water, to disinfect tap water and secondarily treated wastewater. Inactivation of Klebsiella terrigena, Escherichia coli, MS2 bacteriophage and poliovirus 1 was evaluated first in reverse osmosis (RO) treated water. Inactivation of K. terrigena (6-log), E. coli (6-log), MS2 (6-log) and poliovirus 1 (>3-log) was observed after 1 min of ozonation in a 1 L batch reactor. Experiments were then performed to assess the microbiological impact of disinfection using ozone on secondarily treated municipal wastewater. The effect of ozonation on wastewater was determined for total and faecal coliforms, bacteriophages and heterotrophic plate count (HPC) bacteria. Electrochemical ozone generators provided an effective, rapid and low-cost method of wastewater disinfection. Based on the results of this research, electrochemically generated ozone would be well suited to remote, small-scale, disinfection operations and may provide a feasible means of wastewater disinfection in developing countries.


Subject(s)
Developing Countries , Disinfection/methods , Oxidants, Photochemical/chemistry , Ozone/chemistry , Waste Disposal, Fluid/methods , Water Purification/methods , Electrochemistry , Escherichia coli/pathogenicity , Klebsiella/pathogenicity , Levivirus/pathogenicity , Poliovirus/pathogenicity
19.
Water Res ; 37(19): 4573-86, 2003 Nov.
Article in English | MEDLINE | ID: mdl-14568042

ABSTRACT

The City of Montreal Wastewater Treatment Plant uses enhanced physicochemical processes (ferric and/or alum coagulation) for suspended solids and phosphorus removal. The objective of this study was to assess the ability of peracetic acid (PAA), UV, or ozone to inactivate the indicator organisms fecal coliforms, Enterococci, MS-2 coliphage, or Clostridium perfringens in the effluent from this plant. PAA doses to reach the target fecal coliform level of 9000 CFU/100mL exceeded 6 mg/L; similar results were obtained for enterococci, and no inactivation of Clostridium perfringens was observed. However a 1-log reduction of MS-2 occurred at PAA doses of 1.5 mg/L and higher. It was expected that this effluent would have a high ozone demand, and would require relatively high UV fluences, because of relatively high effluent COD, iron and suspended solids concentrations, and low UV transmittance. This was confirmed herein. For UV, the inactivation curve for fecal coliforms showed the typical two-stage shape, with the target of 1000 CFU/100 mL (to account for photoreactivation) occurring in the asymptote zone at fluences >20 mJ/cm(2). In contrast, inactivation curves for MS-2 and Clostridium perfringens were linear. Clostridium perfringens was the most resistant organism. For ozone, inactivation was already observed before any residuals could be measured. The transferred ozone doses to reach target fecal coliform levels ( approximately 2-log reduction) were 30-50 mg/L. MS-2 was less resistant, but Clostridium perfringens was more resistant than fecal coliforms. The different behaviour of the four indicator organisms studied, depending on the disinfectant, suggests that a single indicator organism might not be appropriate. The required dose of any of the disinfectants is unlikely to be economically viable, and upstream changes to the plant will be needed.


Subject(s)
Oxidants, Photochemical/pharmacology , Ozone/pharmacology , Peracetic Acid/pharmacology , Waste Disposal, Fluid/methods , Water Microbiology , Water Purification/methods , Clostridium perfringens/pathogenicity , Disinfection/methods , Enterobacteriaceae/pathogenicity , Enterococcus/pathogenicity , Environmental Monitoring/methods , Levivirus/pathogenicity , Ultraviolet Rays
20.
Appl Environ Microbiol ; 69(7): 3975-8, 2003 Jul.
Article in English | MEDLINE | ID: mdl-12839770

ABSTRACT

Norwalk virus and other human caliciviruses (noroviruses) are major agents of gastroenteritis, and water is a major route of their transmission. In an effort to control Norwalk virus in drinking water, Norwalk virus reduction by bench-scale ozone disinfection was determined using quantitative reverse transcription (RT)-PCR for virus assays. Two other enteric viruses, poliovirus 1 and coliphage MS2, were included for comparison, and their reductions were assayed by infectivity assays as well as by RT-PCR. Virus reductions by ozone were determined using a dose of 0.37 mg of ozone/liter at pH 7 and 5 degrees C for up to 5 min. Based on two RT-PCR assays, the reductions of Norwalk virus were >3 log(10) within a contact time of 10 s, and these were similar to the reductions of the other two viruses determined by the same assay methods. Also, the virus reductions detected by RT-PCR assays were similar to those detected by infectivity assays, indicating that the RT-PCR assay is a reliable surrogate assay for both culturable and nonculturable viruses disinfected with ozone. Overall, the results of this study indicate that Norwalk virus as well as other enteric viruses can be reduced rapidly and extensively by ozone disinfection and that RT-PCR is a useful surrogate assay for both culturable and nonculturable viruses disinfected with ozone.


Subject(s)
Disinfection/methods , Levivirus/drug effects , Norwalk virus/drug effects , Ozone/pharmacology , Poliovirus/drug effects , Water Microbiology , Cell Line , Humans , Levivirus/isolation & purification , Levivirus/pathogenicity , Norwalk virus/isolation & purification , Norwalk virus/pathogenicity , Poliovirus/isolation & purification , Poliovirus/pathogenicity , Reverse Transcriptase Polymerase Chain Reaction , Water Supply
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