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1.
Viruses ; 14(1)2022 01 14.
Article in English | MEDLINE | ID: mdl-35062353

ABSTRACT

A hypovirulent SZ-2-3y strain isolated from diseased Paris polyphylla was identified as Botrytis cinerea. Interestingly, SZ-2-3y was coinfected with a mitovirus, two botouliviruses, and a 3074 nt fusarivirus, designated Botrytis cinerea fusarivirus 8 (BcFV8); it shares an 87.2% sequence identity with the previously identified Botrytis cinerea fusarivirus 6 (BcFV6). The full-length 2945 nt genome sequence of the mitovirus, termed Botrytis cinerea mitovirus 10 (BcMV10), shares a 54% sequence identity with Fusarium boothii mitovirus 1 (FbMV1), and clusters with fungus mitoviruses, plant mitoviruses and plant mitochondria; hence BcMV10 is a new Mitoviridae member. The full-length 2759 nt and 2812 nt genome sequences of the other two botouliviruses, named Botrytis cinerea botoulivirus 18 and 19 (BcBoV18 and 19), share a 40% amino acid sequence identity with RNA-dependent RNA polymerase protein (RdRp), and these are new members of the Botoulivirus genus of Botourmiaviridae. Horizontal transmission analysis showed that BcBoV18, BcBoV19 and BcFV8 are not related to hypovirulence, suggesting that BcMV10 may induce hypovirulence. Intriguingly, a partial BcMV10 sequence was detected in cucumber plants inoculated with SZ-2-3y mycelium or pXT1/BcMV10 agrobacterium. In conclusion, we identified a hypovirulent SZ-2-3y fungal strain from P. polyphylla, coinfected with four novel mycoviruses that could serve as potential biocontrol agents. Our findings provide evidence of cross-kingdom mycoviral sequence transmission.


Subject(s)
Botrytis/virology , Fungal Viruses/classification , Fungal Viruses/isolation & purification , Liliaceae/microbiology , Botrytis/isolation & purification , Coinfection/microbiology , Coinfection/virology , Fungal Viruses/genetics , Fusarium/virology , Genome, Viral , High-Throughput Nucleotide Sequencing , Liliaceae/genetics , Plant Diseases/virology , RNA Viruses/classification , RNA Viruses/genetics , RNA Viruses/isolation & purification , RNA, Viral/genetics , RNA-Dependent RNA Polymerase , Sequence Analysis, RNA , Viral Proteins/genetics
2.
Pol J Microbiol ; 69(1): 91-97, 2020 Sep.
Article in English | MEDLINE | ID: mdl-32189484

ABSTRACT

The root of Paris polyphylla var. yunnanensis, a famous and endangered traditional Chinese herb, has a significant medicinal value. The aim of this study was to analyze the composition and functional characteristics of bacterial endophytes in roots, stems, and leaves of P. polyphylla var. yunnanensis. The 16S rRNA gene sequencing and functional prediction of bacterial endophytes in roots, stems, and leaves of P. polyphylla var. yunnanensis were conducted. The Chao and Shannon indices of the bacteria in roots were significantly higher than those in stems and leaves. The dominant endophyte phyla were Cyanobacteria, Proteobacteria, Bacteroidetes, Firmicutes, and Actinobacteria. The main genera detected in roots were unclassified Cyanobacteria, Rhizobium, Flavobacterium, and Sphingobium; the main genera in stems were norank_c__Cyanobacteria, Bacillus, and Pseudomonas; the main genera in leaves were norank_c__Cyanobacteria and Rhizobium. The microbiota in roots was particularly enriched in functional categories "extracellular structures" and "cytoskeleton" compared with stems and leaves (p < 0.05). Our study reveals the structural and functional characteristics of the endophytic bacteria in roots, stems, and leaves of P. polyphylla var. yunnanensis, which aids in the scientific understanding of this plant.The root of Paris polyphylla var. yunnanensis, a famous and endangered traditional Chinese herb, has a significant medicinal value. The aim of this study was to analyze the composition and functional characteristics of bacterial endophytes in roots, stems, and leaves of P. polyphylla var. yunnanensis. The 16S rRNA gene sequencing and functional prediction of bacterial endophytes in roots, stems, and leaves of P. polyphylla var. yunnanensis were conducted. The Chao and Shannon indices of the bacteria in roots were significantly higher than those in stems and leaves. The dominant endophyte phyla were Cyanobacteria, Proteobacteria, Bacteroidetes, Firmicutes, and Actinobacteria. The main genera detected in roots were unclassified Cyanobacteria, Rhizobium, Flavobacterium, and Sphingobium; the main genera in stems were norank_c__Cyanobacteria, Bacillus, and Pseudomonas; the main genera in leaves were norank_c__Cyanobacteria and Rhizobium. The microbiota in roots was particularly enriched in functional categories "extracellular structures" and "cytoskeleton" compared with stems and leaves (p < 0.05). Our study reveals the structural and functional characteristics of the endophytic bacteria in roots, stems, and leaves of P. polyphylla var. yunnanensis, which aids in the scientific understanding of this plant.


Subject(s)
Bacteria/classification , Liliaceae/microbiology , Plant Leaves/microbiology , Plant Roots/microbiology , Plant Stems/microbiology , Plants, Medicinal/microbiology , Endophytes/classification , Medicine, Chinese Traditional
3.
Plant Cell Physiol ; 61(3): 565-575, 2020 Mar 01.
Article in English | MEDLINE | ID: mdl-31790118

ABSTRACT

Arbuscular mycorrhizas (AMs) are divided into two types according to morphology: Arum- and Paris-type AMs. Gibberellins (GAs) mainly inhibit the establishment of Arum-type AM symbiosis in most model plants, whereas the effects of GAs on Paris-type AM symbiosis are unclear. To provide insight into the mechanism underlying this type of symbiosis, the roles of GAs were investigated in Eustoma grandiflorum when used as the host plant for Paris-type AM establishment. Eustoma grandiflorum seedlings were inoculated with the model AM fungus, Rhizophagus irregularis, and the effects of GA and the GA biosynthesis inhibitor uniconazole-P on the symbiosis were quantitatively evaluated. Exogenous GA significantly increased hyphopodium formation at the epidermis, thus leading to the promotion of fungal colonization and arbuscule formation in the root cortex. By contrast, the suppression of GA biosynthesis and signaling attenuated fungal entry to E. grandiflorum roots. Moreover, the exudates from GA-treated roots strongly induced the hyphal branching of R. irregularis. Our results show that GA has an contrasting effect on Paris-type AM symbiosis in E. grandiflorum compared with Arum-type AM symbiosis. This finding could be explained by the differential regulation of the early colonization stage, where fungal hyphae make contact with and penetrate the epidermis.


Subject(s)
Gibberellins/pharmacology , Glomeromycota/drug effects , Glomeromycota/physiology , Liliaceae/physiology , Mycorrhizae/drug effects , Plant Roots/physiology , Symbiosis/drug effects , Symbiosis/physiology , Epidermis/drug effects , Epidermis/metabolism , Epidermis/microbiology , Glomeromycota/growth & development , Host Microbial Interactions/drug effects , Host Microbial Interactions/physiology , Hyphae , Liliaceae/microbiology , Mycorrhizae/physiology , Plant Roots/drug effects , Plant Roots/microbiology , Seedlings , Signal Transduction , Triazoles/metabolism
4.
Int J Syst Evol Microbiol ; 67(11): 4541-4545, 2017 Nov.
Article in English | MEDLINE | ID: mdl-28945533

ABSTRACT

A Gram-positive bacterium originating from the surface-sterilized leaf of Paris polyphylla var. yunnanensis (Franch.) was characterized by using a polyphasic approach. The isolate formed yellow, smooth, circular colonies on nutrient agar with 0.2 % starch (NSA). Cells were non-motile, non-sporulating, irregular rods or cocci. Strain CPCC 203535T had the highest 16S rRNA gene sequence similarity to the type strain of Ornithinimicrobium kibberense (96.9 %) and formed the deepest branch in the genus Ornithinimicrobium in the neighbour-joining (NJ) phylogenetic tree based on 16S rRNA gene sequences. The major menaquinones of strain CPCC 203535T were MK-8(H4), MK-8(H2) and MK-8. The peptidoglycan contained ornithine as the diagnostic diamino acid. The polar lipid profile consisted of diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), phosphatidylinositol (PI) and unknown lipid (UL). The major fatty acids iso-C14 : 0, iso-C15 : 0, iso-C16 : 0 and anteiso-C15 : 0 were consistent with the fatty acid patterns reported for members of the genus Ornithinimicrobium. The DNA G+C composition is 71.4 mol%. The results of physiological and biochemical tests allowed phenotypic differentiation of strain CPCC 203535T from its closest phylogenetic species in the genus Ornithinimicrobium. Strain CPCC 203535T represents a novel species of the genus Ornithinimicrobium, for which the name Ornithinimicrobium flavum sp. nov. is proposed, with CPCC 203535T (=NBRC 109452 T=KCTC 29164T) as the type strain.


Subject(s)
Actinomycetales/classification , Liliaceae/microbiology , Phylogeny , Actinomycetales/genetics , Actinomycetales/isolation & purification , Bacterial Typing Techniques , Base Composition , Cell Wall/chemistry , China , DNA, Bacterial/genetics , Fatty Acids/chemistry , Nucleic Acid Hybridization , Peptidoglycan/chemistry , Phospholipids/chemistry , Plant Leaves/microbiology , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Vitamin K 2/analogs & derivatives , Vitamin K 2/chemistry
5.
Nat Prod Commun ; 12(1): 87-88, 2017 Jan.
Article in English | MEDLINE | ID: mdl-30549833

ABSTRACT

One new gentisyl alcohol derivative and-seven known compounds were isolated from the culture of Penicillium sp. Their chemical structures were.elucidated by extensive spectroscopic analysis. Compounds 1, 4, and 6 inhibited Bacillus, subtilis, Staphylococcus aureus, and Escherichia coli with MICs of 32-128 µg/mL.


Subject(s)
Liliaceae/microbiology , Penicillium/chemistry , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , Bacteria/drug effects , Fermentation , Magnetic Resonance Spectroscopy , Microbial Sensitivity Tests , Molecular Structure , Spectrometry, Mass, Electrospray Ionization
6.
Oncotarget ; 7(22): 31814-24, 2016 May 31.
Article in English | MEDLINE | ID: mdl-26701723

ABSTRACT

Biotransformation by the endophytes of certain plants changes various compounds, and this 'green' chemistry becomes increasingly important for finding new products with pharmacological activity. In this study, polyphyllin VII (PPL7) was biotransformed by endophytes from the medicinal plant Paris polyphylla Smith, var. yunnanensis. This produced a new compound, ZH-2, with pharmacological activity in vitro and in vivo. ZH-2 was more potent than PPL7 in selectively killing more chemoresistant than chemosensitive breast cancer cells. ZH-2 also re-sensitized chemoresistant breast cancer cells, as evidenced by the improved anti-cancer activity of commonly-used chemotherapeutic agent in vitro, in vivo, and in clinical samples. This anti-chemoresistance effect of ZH-2 was associated with inhibiting the epithelial-mesenchymal transition (EMT) pathway. Taken together, our findings are the first one to link biotransformation with a biomedicine. The results provide insights into developing new pharmacologically-active agents via biotransformation by endophytes.


Subject(s)
Antineoplastic Agents/pharmacology , Breast Neoplasms/drug therapy , Drug Discovery/methods , Drug Resistance, Neoplasm/drug effects , Saponins/metabolism , Saponins/pharmacology , Animals , Antineoplastic Agents/metabolism , Biotransformation , Breast Neoplasms/pathology , Cell Proliferation/drug effects , Delftia acidovorans/metabolism , Dose-Response Relationship, Drug , Endophytes/metabolism , Epithelial-Mesenchymal Transition/drug effects , Female , Green Chemistry Technology , Humans , Liliaceae/microbiology , MCF-7 Cells , Mice, Nude , Tumor Burden/drug effects , Tumor Cells, Cultured , Xenograft Model Antitumor Assays
7.
Zhongguo Zhong Yao Za Zhi ; 40(6): 1055-60, 2015 Mar.
Article in Chinese | MEDLINE | ID: mdl-26226744

ABSTRACT

In this paper, the varying pattern of the amount of rhizospheric microorganisms, including bacteria, actinomycetes and fungus, was observed during the cultivation of Paris polyphylla var. yunnanensis. And the correlations between number of rhizospheric microorganisms and the quality of P. polyphylla var. yunnanensis were also studied. The results showed that the rhizospheric microorganism source of P. polyphylla var. yunnanensis was rich. The distribution of rhizospheric microorganisms (soil bacteria, fungus, actinomycetes, potassium-solubilizing bacteria, inorganic phosphorus-solubilizing bacteria, organic phosphorus-solubilizing bacteria) collected from different origin places existed significant difference (P < 0.05). The varying pattern for the amount of rhizospheric microorganisms was showed as following: the amount of bacteria > the amount of actinomycetes > the amount of fungus. The medicinal quality of P. polyphylla var. yunnanensis was influenced by their habits, and the increase of cultivation years caused the obvious decrease of the quality of P. polyphylla var. yunnanensis. Therefore, the increase of cultivation years will cause the variation of the soil micro-ecology flora, and decrease the nutrient absorption and the utilization of P. polyphylla var. yunnanensis, which will make the decrease of the medical quality of P. polyphylla var. yunnanensis.


Subject(s)
Bacteria/isolation & purification , Fungi/isolation & purification , Liliaceae/chemistry , Plant Extracts/analysis , Rhizosphere , Saponins/analysis , Soil Microbiology , Bacteria/genetics , Bacteria/growth & development , Biodiversity , China , Fungi/genetics , Fungi/growth & development , Liliaceae/microbiology , Rhizome/chemistry , Rhizome/microbiology
8.
Zhongguo Zhong Yao Za Zhi ; 40(20): 3945-52, 2015 Oct.
Article in Chinese | MEDLINE | ID: mdl-27062807

ABSTRACT

Through potted inoculation test at room temperature and indoor analysis, the photosynthetic parameters and physiological and biochemical indexes of Paris polyphylla var. yunnanensis were observed after 28 arbuscular mycorrhizal (AM) fungi were injected into the P. polyphylla var. yunnanensis growing in a sterile soil environment. The results showed that AM fungi established a good symbiosis with P. polyphylla var. yunnanensis. The AM fungi influenced the photosynthetic parameters and physiological and biochemical indexes of P. polyphylla var. yunnanensis. And the influences were varied depending on different AM fungi. The application of AM fungi improved photosynthesis intensity of P. polyphylla var. yunnanensis mesophyll cells, the contents of soluble protein and soluble sugar, protective enzyme activity of P. polyphylla var. yunnanensis leaf, which was beneficial to resist the adverse environment and promote the growth of P. polyphylla var. yunnanensis. Otherwise, there was a certain mutual selectivity between P. polyphylla var. yunnanensis and AM fungi. From the comprehensive effect of inoculation, Racocetra coralloidea, Scutellospora calospora, Claroideoglomus claroideum, S. pellucida and Rhizophagus clarus were the most suitable AM fungi to P. polyphylla var. yunnanensis when P. polyphylla var. yunnanensis was planted in the field.


Subject(s)
Fungi/physiology , Liliaceae/metabolism , Liliaceae/microbiology , Mycorrhizae/physiology , Photosynthesis , Fungi/classification , Fungi/isolation & purification , Mycorrhizae/classification , Mycorrhizae/isolation & purification , Plant Leaves/metabolism , Rhizome/microbiology
9.
Genet Mol Res ; 14(4): 17612-21, 2015 Dec 21.
Article in English | MEDLINE | ID: mdl-26782406

ABSTRACT

Endophyte microorganisms live inside plants without causing them any apparent damage. Recently, endophytic microorganisms have attracted attention because they can produce bioactive compounds of biotechnological interest. The endophytic microorganisms in Paris polyphylla var. yunnanensis (Liliaceae) - a species used since antiquity in traditional Chinese medicine - are under scrutiny because they may be responsible for producing the bioactive metabolites associated with the plant. The levels of bioactive metabolites in the rhizomes of P. polyphylla increase with rhizome age. To elucidate the roles played by endophytes in the accumulation of bioactive metabolites, we investigated the community structure and diversity of the endophytic microorganisms in P. polyphylla rhizomes of different ages (4, 6, and 8 years) using 16S rRNA and internal transcribed spacer (ITS) sequence analysis. 16S rDNA amplicon pyrosequencing revealed that the number of operational taxonomic units was lower in the 8-year-old samples than in the other samples. A total of 28 phyla were observed in the P. polyphylla samples and the predominant bacteria were of the Cyanobacteria and Proteobacteria phyla. Moreover, the percentage of Cyanobacteria increased with rhizome age. Similarly, ITS1 amplicon pyrosequencing identified developmental changes in the most abundant fungal classes; some classes were more prevalent in the 8-year-old rhizomes than in younger rhizomes, indicating the importance in secondary metabolism in older rhizomes. Our study showed that endophyte microorganism diversity and prevalence depend on P. polyphylla rhizome age. There was also an indication that some endophyte microorganisms contribute to the higher saponin content in older P. polyphylla specimens.


Subject(s)
Cyanobacteria/genetics , Liliaceae/genetics , Proteobacteria/genetics , RNA, Ribosomal, 16S/genetics , Rhizome/microbiology , Bacteria/genetics , Cyanobacteria/isolation & purification , Endophytes/genetics , Liliaceae/microbiology , Medicine, Chinese Traditional , Proteobacteria/isolation & purification , Rhizome/genetics
10.
Zhongguo Zhong Yao Za Zhi ; 40(16): 3158-67, 2015 Aug.
Article in Chinese | MEDLINE | ID: mdl-26790285

ABSTRACT

After 28 foreign species of AM fungi were inoculated in sterilized soil, the effects of the AM mycorrhizal colonization and the medicine quality of Paris polyphylla var. yunnanensis were observed by combination of inoculation test in pot at room temperature and instrumental analysis. The results showed that, compared with control group (CK), the inoculation of foreign AM fungi in the soil influenced the spore density, mycorrhizal infection rate, and colonization intensity of AM fungi in root system of P. polyphylla var. yunnanensis. The inoculation of foreign AM fungi enhanced the mycorrhiza viability of P. polyphylla var. yunnanensis by increasing the activity of succinic dehydrogenase (SDH) and alkaline phosphatase (ALP) in intraradical hyphae. The content of single steroid saponin in rhizome of P. polyphylla var. yunnanensis showed variation after P. polyphylla var. yunnanensis was inoculated by different foreign species of AM fungi, which was beneficial for increasing the medicine quality; however, the kinds of steroid saponin showed no difference. In a degree, there was a selectivity of symbiosis between P. polyphylla var. yunnanensis and foreign AM fungi. And we found that the Claroideoglomus claroideum and Racocetra coralloidea were best foreign AM fungi species for cultivating P. polyphylla var. yunnanensis under field condition.


Subject(s)
Fungi/growth & development , Liliaceae/chemistry , Mycorrhizae/growth & development , Plant Roots/microbiology , Chromatography, High Pressure Liquid , Drugs, Chinese Herbal/analysis , Fungi/classification , Liliaceae/growth & development , Liliaceae/microbiology , Mycorrhizae/classification , Plant Roots/chemistry , Plant Roots/growth & development , Quality Control
11.
PLoS One ; 9(6): e99107, 2014.
Article in English | MEDLINE | ID: mdl-24922317

ABSTRACT

Identifying the processes that drive community assembly has long been a central theme in ecology. For microorganisms, a traditional prevailing hypothesis states that "everything is everywhere, but the environment selects". Although the bacterial community in floral nectar may be affected by both atmosphere (air-borne bacteria) and animals as dispersal vectors, the environmental and geographic factors that shape microbial communities in floral nectar are unknown. We studied culturable bacterial communities in Asphodelus aestivus floral nectar and in its typical herbivorous bug Capsodes infuscatus, along an aridity gradient. Bacteria were sampled from floral nectar and bugs at four sites, spanning a geographical range of 200 km from Mediterranean to semi-arid conditions, under open and bagged flower treatments. In agreement with the niche assembly hypothesis, the differences in bacterial community compositions were explained by differences in abiotic environmental conditions. These results suggest that microbial model systems are useful for addressing macro-ecological questions. In addition, similar bacterial communities were found in the nectar and on the surface of the bugs that were documented visiting the flowers. These similarities imply that floral nectar bacteria dispersal is shaped not only by air borne bacteria and nectar consumers as previously reported, but also by visiting vectors like the mirid bugs.


Subject(s)
Flowers/microbiology , Herbivory , Liliaceae/microbiology , Microbiota , Plant Nectar , Animals , Climate , Hemiptera/microbiology , Hemiptera/physiology
12.
Zhongguo Zhong Yao Za Zhi ; 38(22): 3838-44, 2013 Nov.
Article in Chinese | MEDLINE | ID: mdl-24558861

ABSTRACT

The paper is aimed at studying the diversity of endophytic fungi community from Paris polyphylla var. yunnanensis, and to provide a scientific basis for the utilization value of the endophytic fungi as bioactive material resources. In the present study, endophytic fungi were isolated from roots, rhizomes and leaves of wild P. polyphylla var. yunnanensis collected from Baoshan, Heqing county and Songming city of Yunnan province, and identified and classified by morphological methods together with its ITS sequence analysis. Seven and forty-nine strains of endophytic fungi were isolated from P. polyphylla var. yunnanensis. They were identified belonging to 41 genus. In these 41 genus, 3 genus exist in root only, 12 genus only exist in rhizome and 8 genus only exist in leaf. There was difference in endophytic fungi isolated from different sample sites. Endophytic fungi diversity from rhizomes of Heqing site was the highest. Endophytic fungi similarity coefficient was low among different sites and tissues. Based on these results, it is reasonable to propose that endophytic fungi of P. polyphylla var. yannanensis from different tissue and different sample sites has a certain difference which is possibly relate to their different habitats, different structure and composition of each tissue.


Subject(s)
Biodiversity , Endophytes/isolation & purification , Fungi/isolation & purification , Liliaceae/microbiology , Endophytes/classification , Endophytes/genetics , Fungi/classification , Fungi/genetics , Molecular Sequence Data , Phylogeny , Plant Leaves/microbiology , Plant Roots/microbiology , Plant Stems/microbiology
13.
Yao Xue Xue Bao ; 47(9): 1237-42, 2012 Sep.
Article in Chinese | MEDLINE | ID: mdl-23227557

ABSTRACT

To compare the effects of inoculated or non-inoculated with arbuscular mycorrhizal (AM) fungi on the steroidal saponin component in root of Paris polyphylla var. yunnanensis. By pot experiments, steroid saponin component in root of P. polyphylla var. yunnanensis was determined and compared by HPLC. The results showed there was difference in the effects of different AM fungal on the secondary metabolite steroid saponin in P. polyphylla var. yunnanensis. After elicitors treatment, AM fungal did not change the chemical backgrounds of P. polyphylla var. yunnanensis, but can improve partly the content of chemical compositions in roots. In conclusion, there was selectivity between AM fungal and P. polyphylla var. yunnanensis. Glomus intraradices was the most appropriate strain for inoculation P. polyphylla var. yunnanensis.


Subject(s)
Liliaceae/chemistry , Liliaceae/microbiology , Mycorrhizae/growth & development , Saponins/metabolism , Plants, Medicinal/chemistry , Plants, Medicinal/microbiology , Rhizome/chemistry , Rhizome/microbiology
14.
Zhongguo Zhong Yao Za Zhi ; 36(22): 3091-5, 2011 Nov.
Article in Chinese | MEDLINE | ID: mdl-22375385

ABSTRACT

OBJECTIVE: Through correlation and path analysis between total saponins content in rhizome/mycorrhizal infection rate in roots of Pairs polyphylla var. yunnanensis and soil factors, to make an inquiry into the role of soil factors in the quality formation of P. polyphylla var. yunnanensis. METHOD: Tested total saponins in rhizome, mycorrhizal fungal infection rate in root and physical and chemical properties in rhizosphere soil in 25 different growth areas, and statistically analyzed the relationship between total saponins in rhizome/mycorrhizal infection rate in roots of P. polyphylla var. yunnanensis and soil factors by using correlation and path analysis. RESULT: The symbiosis relationship between AM mycorrhizal and roots of P. polyphylla var. yunnanensis were better established under natural condition, of which the infection ratio between 36.41%, 83.37%. There were significantly positive correlation between total saponins content in rhizome and urease activity or alkaline phosphatase activities or organic matter in soil, but there was significantly negative correlation between total saponins content and bulk density. There was significantly positive correlation between AM infection ratio and alkaline nitrogen. Path analysis indicated that total saponins of rhizome mainly affected by alkaline nitrogen in soil rhizosphere, secondly by soil organic matter and soil urease activity. While the mycorrhizal fungal colonization ratio was mainly affected by soil pH, secondly by alkaline nitrogen, urease activity, and available phospherus in soil. CONCLUSION: There is closed relationship between quality formation of P. polyphylla var. yunnanensis and soil factors. Path analysis is better for reflecting the contribution of soil factors to total saponins and mycorrhizal infection ratio.


Subject(s)
Liliaceae/chemistry , Liliaceae/microbiology , Mycorrhizae/growth & development , Rhizome/chemistry , Saponins/analysis , Soil/analysis , Alkaline Phosphatase/metabolism , Urease/metabolism
15.
Mycopathologia ; 170(3): 195-202, 2010 Sep.
Article in English | MEDLINE | ID: mdl-20401550

ABSTRACT

Essential oils extracted from Citrus reticulata and Cymbopogon citratus were tested in vitro against the toxigenic strain of Aspergillus flavus, isolated from the tuberous roots of Asparagus racemosus, used in preparation of herbal drugs. The essential oils completely inhibited the growth of A. flavus at 750 ppm and also exhibited a broad fungitoxic spectrum against nine additional fungi isolated from the roots. Citrus reticulata and Cymbopogon citratus essential oils completely inhibited aflatoxin B(1) production at 750 and 500 ppm, respectively. During in vivo investigation, the incidence of fungi and aflatoxin B(1) production decreased considerably in essential oil-treated root samples. The findings thus indicate possible exploitation of the essential oils as effective inhibitor of aflatoxin B(1) production and as post-harvest fungitoxicant of traditionally used plant origin for the control of storage fungi. These essential oils may be recommended as plant-based antifungals as well as aflatoxin B(1) suppressors in post-harvest processing of herbal samples.


Subject(s)
Aflatoxins/metabolism , Antifungal Agents/pharmacology , Aspergillus flavus/drug effects , Aspergillus flavus/growth & development , Citrus/chemistry , Cymbopogon/chemistry , Oils, Volatile/pharmacology , Antifungal Agents/isolation & purification , Aspergillus flavus/isolation & purification , Aspergillus flavus/metabolism , Liliaceae/microbiology , Microbial Sensitivity Tests , Oils, Volatile/isolation & purification , Plant Roots/microbiology
16.
Int J Syst Evol Microbiol ; 60(Pt 5): 1147-1151, 2010 May.
Article in English | MEDLINE | ID: mdl-19666795

ABSTRACT

A Gram-stain-positive, aerobic actinomycete, strain YIM 60513(T), was isolated from the stem of Gloriosa superba L. collected from tropical rainforest at Xishuangbanna, Yunnan Province, south-west China. 16S rRNA gene sequence analysis indicated that strain YIM 60513(T) belonged to the genus Saccharopolyspora and was closely related to Saccharopolyspora gregorii NCIB 12823(T) (99.1 % similarity) and Saccharopolyspora cebuensis SPE 10-1(T) (97.3 % similarity). Data for the predominant quinone [MK-9(H(4))], major fatty acids (iso-C(16 : 0), anteiso-C(17 : 0) and C(17 : 1) cis9) and G+C content of the genomic DNA (71.6 mol%) were similar to those for members of the genus Saccharopolyspora. The level of DNA-DNA relatedness between strain YIM 60513(T) and S. gregorii NCIB 12823(T) was 43 %. The combination of phylogenetic analysis, phenotypic differences, chemotaxonomic characteristics and DNA-DNA hybridization data supported the view that strain YIM 60513(T) should be distinguished from S. gregorii NCIB 12823(T) and S. cebuensis SPE 10-1(T). Strain YIM 60513(T) therefore represents a novel species of the genus Saccharopolyspora, for which the name Saccharopolyspora gloriosae sp. nov. is proposed. The type strain is YIM 60513(T) (=KCTC 19243(T) =CCTCC AA 207006(T)).


Subject(s)
Liliaceae/microbiology , Plant Stems/microbiology , Saccharopolyspora/classification , Saccharopolyspora/isolation & purification , Trees , Tropical Climate , Bacterial Typing Techniques , Base Composition , China , DNA, Bacterial/analysis , DNA, Ribosomal/analysis , Fatty Acids/analysis , Genes, rRNA , Genotype , Molecular Sequence Data , Nucleic Acid Hybridization , Phenotype , Phylogeny , RNA, Ribosomal, 16S/genetics , Saccharopolyspora/genetics , Saccharopolyspora/physiology , Sequence Analysis, DNA , Species Specificity
17.
FEMS Microbiol Ecol ; 58(2): 225-35, 2006 Nov.
Article in English | MEDLINE | ID: mdl-17064264

ABSTRACT

Arbuscular mycorrhizal fungi (AMF) communities in Clintonia borealis roots from a boreal mixed forests in northwestern Québec were investigated. Roots were sampled from 100 m2 plots whose overstory was dominated by either trembling aspen (Populus tremuloides Michx.), white birch (Betula papyrifera Marsh.), or mixed white spruce (Picea glauca (Moench) Voss) and balsam fir (Abies balsamea (L.) Mill.). Part of the 18S ribosomal gene of the AMF was amplified and the resulting PCR products were cloned. Restriction analysis of the 576 resulting clones yielded 92 different restriction patterns which were then sequenced. Fifty-two sequences closely matched other Glomus sequences from Genbank. Phylogenetic analysis revealed 10 different AMF sequence types, most of which clustered with other uncultured AM sequences from plant roots from various field sites. Compared with other AMF communities from comparable studies, richness and diversity were higher than observed in an arable field, but lower than seen in a tropical forest and a temperate wetland. The AMF communities from Clintonia roots under the different canopy types did not differ significantly and the dominant sequence type, which clustered with AM sequences from a variety of environments and hosts at distant geographical locations, represented 66.9% of all the clones analyzed.


Subject(s)
Biodiversity , Genes, rRNA , Liliaceae/microbiology , Mycorrhizae/classification , Plant Roots/microbiology , RNA, Ribosomal, 18S/genetics , Canada , Cloning, Molecular , Cluster Analysis , DNA, Fungal/genetics , DNA, Fungal/isolation & purification , Geography , Molecular Sequence Data , Mycorrhizae/genetics , Mycorrhizae/isolation & purification , Phylogeny , Polymerase Chain Reaction , Polymorphism, Restriction Fragment Length , Sequence Analysis, DNA , Sequence Homology, Nucleic Acid , Soil Microbiology
18.
Wei Sheng Wu Xue Bao ; 45(5): 776-9, 2005 Oct.
Article in Chinese | MEDLINE | ID: mdl-16342775

ABSTRACT

Two endophytic strains SS01 and SS02 with the potential for producing steroidal saponins were isolated from the underground stems of Paris polyphylla var. chinensis Franch. The TLC comparison indicated that there are 3 sports with similar R(f) between the metabolites of SS01 and the saponins of Paris polyphylla var. chinensis Franch. And there are 2 sports with similar R(f) between the metabolites of SS02 and the saponins of Paris polyphylla var. chinensis The and that biochemical SS01 Franch. characteristics of morphology, physiological belonged showed to Enterobacteriaceae and SS02 belonged to Bacillus sp.. The 16S rDNA of SS01 and SS02 were PCR and sequenced. The accessions of GenBank are AY842143 and AY842144, respectively. The two 16S rDNA phylogenetic trees were constructed by comparing with the published 16S rDNA sequences of the relative bacteria species. In the first phylogenetic tree SS01 and Cedecea davisae DSM 4568 was the closest relative with 98.9% sequence similarity, and in the second phylogenetic tree SS02 and Paenibacillus daejeonensis was the closest relative with 97.7% sequence similarity. According to the phylogenetic analysis they were identified as Cedecea davisae SS01 and Paenibacillus daejeonensis SS02, respectively.


Subject(s)
Bacillaceae/isolation & purification , Drugs, Chinese Herbal , Enterobacteriaceae/isolation & purification , Liliaceae/microbiology , Saponins/biosynthesis , Steroids/biosynthesis , Bacillaceae/classification , Base Sequence , Enterobacteriaceae/classification , Fermentation , Molecular Sequence Data , Phylogeny , RNA, Ribosomal, 16S/genetics
19.
Mycol Res ; 109(Pt 11): 1250-8, 2005 Nov.
Article in English | MEDLINE | ID: mdl-16279418

ABSTRACT

Teliospores, basidia, cultures, hyphal septations, cellular interactions and nucleotide sequences from the D1/D2 region of the nuclear large subunit ribosomal RNA gene of Entyloma ossifragi occurring on Narthecium ossifragum (Nartheciaceae) were examined and compared with findings in the Georgefischeriales and other Ustilaginomycetes. The data show that Entyloma ossifragi is a member of the Georgefischeriales. Among the Georgefischeriales, Entyloma ossifragi morphologically is very similar to Jamesdicksonia species, but differs from this genus and all other Georgefischeriales by the formation of dolipores without striations that become closed during teliosporogenesis. In addition, in our molecular phylogenetic analyses Entyloma ossifragi stands well apart from Jamesdicksonia, forming with some Tilletiopsis specimens a statistically supported cluster. Accordingly, the genus Gjaerumia gen. nov. and the family Gjaerumiaceae fam. nov. are proposed to accommodate Entyloma ossifragi in the Georgefischeriales. The new combination G. ossifragi (syn. Entyloma ossifragi) is made.


Subject(s)
Basidiomycota/classification , Liliaceae/microbiology , Base Sequence , Basidiomycota/genetics , Basidiomycota/ultrastructure , Bayes Theorem , DNA, Fungal/chemistry , DNA, Fungal/genetics , DNA, Ribosomal/chemistry , DNA, Ribosomal/genetics , Microscopy, Electron, Transmission , Microscopy, Phase-Contrast , Phylogeny , Polymerase Chain Reaction , Sequence Alignment , Sequence Analysis, DNA
20.
FEMS Microbiol Lett ; 249(2): 255-66, 2005 Aug 15.
Article in English | MEDLINE | ID: mdl-16000243

ABSTRACT

Heterosmilax japonica Kunth is well recognized for its diuretic effects in China. However, little is known about its endophytic fungi. In this study, microbial communities inhabiting the stems of H. japonica in spring and summer were investigated by light microscopy and cultivation-independent approaches, such as RFLP analysis and sequencing of rDNA ITS library. Molecular phylogenetic analysis showed that a broad spectrum of fungi, including Mycosphaerella, Phomopsis, Aureobasidium, Cladosporium, Glomerella, Botryosphaeria, Guignardia, is able to colonize the plants internally. Particularly, several rDNA sequences determined in this study like YJ4-61 are not specifically affiliated with any currently documented fungal sequences in the public database. Several sequence types, such as YJ4-9 and YJ4-70, are significantly similar to some uncultured environmental samples. Furthermore, our result also showed that the samples collected in spring harbored more abundant endophytic populations than that in summer, implying a seasonal fluctuation for the endophytes in H. japonica.


Subject(s)
Ascomycota/isolation & purification , Fungi/isolation & purification , Liliaceae/microbiology , Plants, Medicinal/microbiology , Ascomycota/classification , Ascomycota/genetics , Base Sequence , China , Conserved Sequence , DNA Primers , DNA, Fungal/genetics , DNA, Ribosomal/genetics , Fungi/growth & development , Molecular Sequence Data , Phylogeny , Plant Diseases/microbiology , Plant Stems/microbiology , Polymerase Chain Reaction , Polymorphism, Restriction Fragment Length , Sequence Alignment , Sequence Homology, Nucleic Acid
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