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1.
Sci Rep ; 11(1): 15311, 2021 07 28.
Article in English | MEDLINE | ID: mdl-34321535

ABSTRACT

This study explored a germplasm collection consisting of 112 Luffa acutangula (ridge gourd) accessions, mainly from Thailand. A total of 2834 SNPs were used to establish population structure and underlying genetic diversity while exploring the fruit characteristics together with genetic information which would help in the selection of parental lines for a breeding program. The study found that the average polymorphism information content value of 0.288 which indicates a moderate genetic diversity for this L. acutangula germplasm. STRUCTURE analysis (ΔK at K = 6) allowed us to group the accessions into six subpopulations that corresponded well with the unrooted phylogenetic tree and principal coordinate analyses. When plotted, the STRUCTURE bars to the area of collection, we observed an admixed genotype from surrounding accessions and a geneflow confirmed by the value of FST = 0.137. AMOVA based on STRUCTURE clustering showed a low 12.83% variation between subpopulations that correspond well with the negative inbreeding coefficient value (FIS = - 0.092) and low total fixation index (FIT = 0.057). There were distinguishing fruit shapes and length characteristics in specific accessions for each subpopulation. The genetic diversity and different fruit shapes in the L. acutangula germplasm could benefit the ridge gourd breeding programs to meet the demands and needs of consumers, farmers, and vegetable exporters such as increasing the yield of fruit by the fruit width but not by the fruit length to solve the problem of fruit breakage during exportation.


Subject(s)
Genes, Plant , Luffa/genetics , Polymorphism, Single Nucleotide , Asia , DNA, Plant/genetics , Fruit/ultrastructure , Genetic Variation , Heterozygote , Luffa/ultrastructure , Phylogeny , Plant Breeding , Thailand , United States
2.
Molecules ; 25(4)2020 Feb 17.
Article in English | MEDLINE | ID: mdl-32079161

ABSTRACT

The naproxen-degrading bacterium Bacillus thuringiensis B1(2015b) was immobilised onto loofah sponge and introduced into lab-scale trickling filters. The trickling filters constructed for this study additionally contained stabilised microflora from a functioning wastewater treatment plant to assess the behavior of introduced immobilized biocatalyst in a fully functioning bioremediation system. The immobilised cells degraded naproxen (1 mg/L) faster in the presence of autochthonous microflora than in a monoculture trickling filter. There was also abundant colonization of the loofah sponges by the microorganisms from the system. Analysis of the influence of an acute, short-term naproxen exposure on the indigenous community revealed a significant drop in its diversity and qualitative composition. Bioaugmentation was also not neutral to the microflora. Introducing a new microorganism and increasing the removal of the pollutant caused changes in the microbial community structure and species composition. The incorporation of the immobilised B1(2015b) was successful and the introduced strain colonized the basic carrier in the trickling filter after the complete biodegradation of the naproxen. As a result, the bioremediation system could potentially be used to biodegrade naproxen in the future.


Subject(s)
Bacillus thuringiensis/metabolism , Cells, Immobilized/metabolism , Luffa/microbiology , Naproxen/metabolism , Bacillus thuringiensis/ultrastructure , Biodegradation, Environmental , Biofilms , DNA, Ribosomal/genetics , Filtration/instrumentation , Luffa/ultrastructure , Phylogeny
3.
Appl Biochem Biotechnol ; 180(2): 338-48, 2016 Sep.
Article in English | MEDLINE | ID: mdl-27130685

ABSTRACT

A laboratory-scale biofilter study was performed to treat cumene-inoculated mixed culture of bacterial community and loofa sponge (Luffa cylindrica) as support media for a period of 120 days in five distinct phases. The removal efficiency was obtained in the range of 40-85 % with maximum elimination capacity of 700 g m(-3) h(-1) at the inlet load of 1167 g m(-3) h(-1). The result demonstrated that loofa sponge is good support media for the removal of cumene at higher loading rates. Loofa sponge was characterized via chemical analysis and analytical techniques such as XRD; FTIR; XPS; and CHN, and the result obtained confirms its suitability as biofilter media. The SEM results of loofa with inoculum shows the formation of a biofilm layer on the surface of loofa. The GC-MS analysis of leachate confirms the presence of different organic compounds such as acetaldehyde and 4-hydroxy-2-oxopentanoic acids which are stable metabolites during cumene biodegradation. About 12.69 % of carbon present in inlet cumene was converted to biomass.


Subject(s)
Benzene Derivatives/metabolism , Carbon/metabolism , Filtration/instrumentation , Filtration/methods , Luffa/metabolism , Metabolome , Biodegradation, Environmental , Gas Chromatography-Mass Spectrometry , Luffa/ultrastructure , Spectroscopy, Fourier Transform Infrared , X-Ray Diffraction
4.
J Ind Microbiol Biotechnol ; 40(11): 1315-20, 2013 Nov.
Article in English | MEDLINE | ID: mdl-23955536

ABSTRACT

Bioconversion of lipophilic compounds poorly soluble in water, such as sterols, required the use of chemicals and solubilizing agents. On the other hand, it was shown that immobilization of Mycobacterium species on the dried fruit of Luffa cylindrica (DFLC) allows a close interaction between immobilized cells and cholesterol particles and increases by then the product's yield. In this work, the use of DFLC in a 5-l jar bioreactor with phytosterols mixture (1 g/l) as substrate was assessed without addition of any chemicals or solubilizing agents. DFLC increased by a factor of four the volumetric productivity of androstenones (0.08 g/l day). Products were accumulated in the aqueous medium while substrates remained on the fibers of DFLC. This observation lets envisage a green semi-continuous process of androstenone production. DFLC has no influence on cell growth, and is moreover natural, inexpensive, non-toxic, and mechanically strong.


Subject(s)
Bioreactors , Luffa , Mycobacterium/metabolism , Phytosterols/metabolism , Androstenes/metabolism , Bioreactors/economics , Biotransformation , Cells, Immobilized/metabolism , Cholesterol/metabolism , Fruit/economics , Fruit/metabolism , Fruit/ultrastructure , Luffa/metabolism , Luffa/ultrastructure , Mycobacterium/cytology , Phytosterols/biosynthesis , Solubility
5.
Article in English | MEDLINE | ID: mdl-23802165

ABSTRACT

The formaldehyde (FA) degradation ability of the loofa-immobilized Ralstonia eutropha cells in a packed bed reactor was modeled using a statistically based design of the experiment (DOE) considering application of response surface methodology (RSM). The simultaneous effects of four operative test factors on the cells performance in terms of FA degradation rate and extent of the chemical oxygen demand (COD) removal were monitored. The combination of factors at initial FA concentration of 629.7 mg L(-1)h(-1), recycling substrate flow rate of 4.4 mL min(-1), aeration rate of 1.05 vvm, and the system's temperature of 28.8°C resulted the optimal conditions for the FA biodegradation rate and COD removal efficiency. Loofa porous structure was found to be a protective environment for the cells in exposing to the toxic substances and the scanning electron microscopy (SEM) images revealed extensive cells penetration within this support. Oxygen transfer analysis in the form of evaluating K la value was also carried out and at the optimum conditions of the DOE was equaled to 9.96 h(-1)and oxygen uptake rate was 35.6 mg L(-1)h(-1).


Subject(s)
Bioreactors , Cupriavidus necator/metabolism , Formaldehyde/metabolism , Luffa , Water Pollutants, Chemical/metabolism , Cells, Immobilized/metabolism , Cupriavidus necator/ultrastructure , Luffa/ultrastructure , Microscopy, Electron, Scanning , Models, Theoretical , Oxygen/metabolism , Software
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