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1.
Nucleic Acids Res ; 51(14): 7563-7579, 2023 08 11.
Article in English | MEDLINE | ID: mdl-36928678

ABSTRACT

Mutations in mitochondrial (mt-)tRNAs frequently cause mitochondrial dysfunction. Mitochondrial myopathy, encephalopathy, lactic acidosis, and stroke-like episodes (MELAS), and myoclonus epilepsy associated with ragged red fibers (MERRF) are major clinical subgroups of mitochondrial diseases caused by pathogenic point mutations in tRNA genes encoded in mtDNA. We previously reported a severe reduction in the frequency of 5-taurinomethyluridine (τm5U) and its 2-thiouridine derivative (τm5s2U) in the anticodons of mutant mt-tRNAs isolated from the cells of patients with MELAS and MERRF, respectively. The hypomodified tRNAs fail to decode cognate codons efficiently, resulting in defective translation of respiratory chain proteins in mitochondria. To restore the mitochondrial activity of MELAS patient cells, we overexpressed MTO1, a τm5U-modifying enzyme, in patient-derived myoblasts. We used a newly developed primer extension method and showed that MTO1 overexpression almost completely restored the τm5U modification of the MELAS mutant mt-tRNALeu(UUR). An increase in mitochondrial protein synthesis and oxygen consumption rate suggested that the mitochondrial function of MELAS patient cells can be activated by restoring the τm5U of the mutant tRNA. In addition, we confirmed that MTO1 expression restored the τm5s2U of the mutant mt-tRNALys in MERRF patient cells. These findings pave the way for epitranscriptomic therapies for mitochondrial diseases.


Subject(s)
MELAS Syndrome , MERRF Syndrome , RNA, Transfer , Humans , DNA, Mitochondrial/genetics , DNA, Mitochondrial/metabolism , MELAS Syndrome/genetics , MELAS Syndrome/metabolism , MELAS Syndrome/therapy , MERRF Syndrome/genetics , MERRF Syndrome/metabolism , MERRF Syndrome/therapy , Mitochondria/genetics , Mitochondria/metabolism , Mutation , RNA, Transfer/genetics , RNA, Transfer/metabolism
2.
Mol Med ; 28(1): 90, 2022 08 03.
Article in English | MEDLINE | ID: mdl-35922766

ABSTRACT

BACKGROUND: Myoclonus, Epilepsy and Ragged-Red-Fibers (MERRF) is a mitochondrial encephalomyopathy due to heteroplasmic mutations in mitochondrial DNA (mtDNA) most frequently affecting the tRNALys gene at position m.8344A > G. Defective tRNALys severely impairs mitochondrial protein synthesis and respiratory chain when a high percentage of mutant heteroplasmy crosses the threshold for full-blown clinical phenotype. Therapy is currently limited to symptomatic management of myoclonic epilepsy, and supportive measures to counteract muscle weakness with co-factors/supplements. METHODS: We tested two therapeutic strategies to rescue mitochondrial function in cybrids and fibroblasts carrying different loads of the m.8344A > G mutation. The first strategy was aimed at inducing mitochondrial biogenesis directly, over-expressing the master regulator PGC-1α, or indirectly, through the treatment with nicotinic acid, a NAD+ precursor. The second was aimed at stimulating the removal of damaged mitochondria through prolonged rapamycin treatment. RESULTS: The first approach slightly increased mitochondrial protein expression and respiration in the wild type and intermediate-mutation load cells, but was ineffective in high-mutation load cell lines. This suggests that induction of mitochondrial biogenesis may not be sufficient to rescue mitochondrial dysfunction in MERRF cells with high-mutation load. The second approach, when administered chronically (4 weeks), induced a slight increase of mitochondrial respiration in fibroblasts with high-mutation load, and a significant improvement in fibroblasts with intermediate-mutation load, rescuing completely the bioenergetics defect. This effect was mediated by increased mitochondrial biogenesis, possibly related to the rapamycin-induced inhibition of the Mechanistic Target of Rapamycin Complex 1 (mTORC1) and the consequent activation of the Transcription Factor EB (TFEB). CONCLUSIONS: Overall, our results point to rapamycin-based therapy as a promising therapeutic option for MERRF.


Subject(s)
MERRF Syndrome , DNA, Mitochondrial/genetics , DNA, Mitochondrial/metabolism , Humans , MERRF Syndrome/genetics , MERRF Syndrome/metabolism , Mitochondria/genetics , Mitochondria/metabolism , Mitochondrial Proteins/genetics , Mitochondrial Proteins/metabolism , Mutation , RNA, Transfer, Lys/genetics , RNA, Transfer, Lys/metabolism , Sirolimus/metabolism , Sirolimus/pharmacology
3.
Biochim Biophys Acta Mol Basis Dis ; 1866(6): 165726, 2020 06 01.
Article in English | MEDLINE | ID: mdl-32061767

ABSTRACT

Mitochondrial diseases are considered rare genetic disorders characterized by defects in oxidative phosphorylation (OXPHOS). They can be provoked by mutations in nuclear DNA (nDNA) or mitochondrial DNA (mtDNA). MERRF (Myoclonic Epilepsy with Ragged-Red Fibers) syndrome is one of the most frequent mitochondrial diseases, principally caused by the m.8344A>G mutation in mtDNA, which affects the translation of all mtDNA-encoded proteins and therefore impairs mitochondrial function. In the present work, we evaluated autophagy and mitophagy flux in transmitochondrial cybrids and fibroblasts derived from a MERRF patient, reporting that Parkin-mediated mitophagy is increased in MERRF cell cultures. Our results suggest that supplementation with coenzyme Q10 (CoQ), a component of the electron transport chain (ETC) and lipid antioxidant, prevents Parkin translocation to the mitochondria. In addition, CoQ acts as an enhancer of autophagy and mitophagy flux, which partially improves cell pathophysiology. The significance of Parkin-mediated mitophagy in cell survival was evaluated by silencing the expression of Parkin in MERRF cybrids. Our results show that mitophagy acts as a cell survival mechanism in mutant cells. To confirm these results in one of the main affected cell types in MERRF syndrome, mutant induced neurons (iNs) were generated by direct reprogramming of patients-derived skin fibroblasts. The treatment of MERRF iNs with Guttaquinon CoQ10 (GuttaQ), a water-soluble derivative of CoQ, revealed a significant improvement in cell bioenergetics. These results indicate that iNs, along with fibroblasts and cybrids, can be utilized as reliable cellular models to shed light on disease pathomechanisms as well as for drug screening.


Subject(s)
Energy Metabolism/genetics , MERRF Syndrome/genetics , Ubiquinone/analogs & derivatives , Ubiquitin-Protein Ligases/genetics , Autophagy/genetics , Cells, Cultured , DNA, Mitochondrial/genetics , Fibroblasts/drug effects , Humans , Lipid Peroxidation/drug effects , MERRF Syndrome/drug therapy , MERRF Syndrome/metabolism , MERRF Syndrome/pathology , Membrane Potential, Mitochondrial/drug effects , Mitochondria/genetics , Mitochondria/pathology , Mitophagy/genetics , Oxidative Phosphorylation/drug effects , Protein Transport/genetics , Ubiquinone/metabolism , Ubiquinone/pharmacology
4.
Biochim Biophys Acta Mol Cell Res ; 1866(5): 861-881, 2019 05.
Article in English | MEDLINE | ID: mdl-30797798

ABSTRACT

Mitochondrial diseases are a group of rare heterogeneous genetic disorders caused by total or partial mitochondrial dysfunction. They can be caused by mutations in nuclear or mitochondrial DNA (mtDNA). MERRF (Myoclonic Epilepsy with Ragged-Red Fibers) syndrome is one of the most common mitochondrial disorders caused by point mutations in mtDNA. It is mainly caused by the m.8344A > G mutation in the tRNALys (UUR) gene of mtDNA (MT-TK gene). This mutation affects the translation of mtDNA encoded proteins; therefore, the assembly of the electron transport chain (ETC) complexes is disrupted, leading to a reduced mitochondrial respiratory function. However, the molecular pathogenesis of MERRF syndrome remains poorly understood due to the lack of appropriate cell models, particularly in those cell types most affected in the disease such as neurons. Patient-specific induced neurons (iNs) are originated from dermal fibroblasts derived from different individuals carrying the particular mutation causing the disease. Therefore, patient-specific iNs can be used as an excellent cell model to elucidate the mechanisms underlying MERRF syndrome. Here we present for the first time the generation of iNs from MERRF dermal fibroblasts by direct reprograming, as well as a series of pathophysiological characterizations which can be used for testing the impact of a specific mtDNA mutation on neurons and screening for drugs that can correct the phenotype.


Subject(s)
Cellular Reprogramming , Dermis , Fibroblasts , MERRF Syndrome , Neurons , Adult , Cellular Reprogramming Techniques , DNA, Mitochondrial/genetics , DNA, Mitochondrial/metabolism , Dermis/metabolism , Dermis/pathology , Fibroblasts/metabolism , Fibroblasts/pathology , Humans , MERRF Syndrome/genetics , MERRF Syndrome/metabolism , MERRF Syndrome/pathology , Male , Middle Aged , Neurons/metabolism , Neurons/pathology , Point Mutation
5.
Nat Commun ; 9(1): 3966, 2018 09 27.
Article in English | MEDLINE | ID: mdl-30262910

ABSTRACT

Post-transcriptional RNA modifications play a critical role in the pathogenesis of human mitochondrial disorders, but the mechanisms by which specific modifications affect mitochondrial protein synthesis remain poorly understood. Here we used a quantitative RNA sequencing approach to investigate, at nucleotide resolution, the stoichiometry and methyl modifications of the entire mitochondrial tRNA pool, and establish the relevance to human disease. We discovered that a N1-methyladenosine (m1A) modification is missing at position 58 in the mitochondrial tRNALys of patients with the mitochondrial DNA mutation m.8344 A > G associated with MERRF (myoclonus epilepsy, ragged-red fibers). By restoring the modification on the mitochondrial tRNALys, we demonstrated the importance of the m1A58 to translation elongation and the stability of selected nascent chains. Our data indicates regulation of post-transcriptional modifications on mitochondrial tRNAs is finely tuned for the control of mitochondrial gene expression. Collectively, our findings provide novel insight into the regulation of mitochondrial tRNAs and reveal greater complexity to the molecular pathogenesis of MERRF.


Subject(s)
Mitochondria/metabolism , Protein Biosynthesis , RNA, Transfer, Lys/metabolism , Base Sequence , HEK293 Cells , Humans , MERRF Syndrome/metabolism , Muscle, Skeletal/metabolism , Myoblasts/metabolism , Nucleic Acid Conformation , RNA, Transfer, Lys/chemistry
6.
Int J Mol Sci ; 19(7)2018 06 21.
Article in English | MEDLINE | ID: mdl-29933571

ABSTRACT

The Escherichia coli protein toxin cytotoxic necrotizing factor 1 (CNF1), which acts on the Rho GTPases that are key regulators of the actin cytoskeleton, is emerging as a potential therapeutic tool against certain neurological diseases characterized by cellular energy homeostasis impairment. In this brief communication, we show explorative results on the toxin's effect on fibroblasts derived from a patient affected by myoclonic epilepsy with ragged-red fibers (MERRF) that carries a mutation in the m.8344A>G gene of mitochondrial DNA. We found that, in the patient's cells, besides rescuing the wild-type-like mitochondrial morphology, CNF1 administration is able to trigger a significant increase in cellular content of ATP and of the mitochondrial outer membrane marker Tom20. These results were accompanied by a profound F-actin reorganization in MERRF fibroblasts, which is a typical CNF1-induced effect on cell cytoskeleton. These results point at a possible role of the actin organization in preventing or limiting the cell damage due to mitochondrial impairment and at CNF1 treatment as a possible novel strategy against mitochondrial diseases still without cure.


Subject(s)
Adenosine Triphosphate/biosynthesis , Bacterial Toxins/pharmacology , DNA, Mitochondrial/genetics , Escherichia coli Proteins/pharmacology , Fibroblasts/drug effects , Mitochondria/drug effects , Mutation , Bacterial Toxins/isolation & purification , DNA, Mitochondrial/metabolism , Electron Transport Complex IV/genetics , Electron Transport Complex IV/metabolism , Escherichia coli/chemistry , Escherichia coli Proteins/isolation & purification , Fibroblasts/metabolism , Fibroblasts/pathology , Gene Expression , Humans , MERRF Syndrome/drug therapy , MERRF Syndrome/genetics , MERRF Syndrome/metabolism , MERRF Syndrome/pathology , Male , Membrane Transport Proteins/genetics , Membrane Transport Proteins/metabolism , Middle Aged , Mitochondria/genetics , Mitochondria/metabolism , Mitochondria/ultrastructure , Mitochondrial Precursor Protein Import Complex Proteins , Pilot Projects , Primary Cell Culture , Receptors, Cell Surface/genetics , Receptors, Cell Surface/metabolism , Stress Fibers/drug effects , Stress Fibers/metabolism , Stress Fibers/ultrastructure
7.
Nat Commun ; 9(1): 1875, 2018 05 14.
Article in English | MEDLINE | ID: mdl-29760464

ABSTRACT

It has been generally thought that tRNA modifications are stable and static, and their frequencies are rarely regulated. N6-threonylcarbamoyladenosine (t6A) occurs at position 37 of five mitochondrial (mt-)tRNA species. We show that YRDC and OSGEPL1 are responsible for t6A37 formation, utilizing L-threonine, ATP, and CO2/bicarbonate as substrates. OSGEPL1-knockout cells exhibit respiratory defects and reduced mitochondrial translation. We find low level of t6A37 in mutant mt-tRNA isolated from the MERRF-like patient's cells, indicating that lack of t6A37 results in pathological consequences. Kinetic measurements of t6A37 formation reveal that the Km value of CO2/bicarbonate is extremely high (31 mM), suggesting that CO2/bicarbonate is a rate-limiting factor for t6A37 formation. Consistent with this, we observe a low frequency of t6A37 in mt-tRNAs isolated from human cells cultured without bicarbonate. These findings indicate that t6A37 is regulated by sensing intracellular CO2/bicarbonate concentration, implying that mitochondrial translation is modulated in a codon-specific manner under physiological conditions.


Subject(s)
Bicarbonates/pharmacology , Carbon Dioxide/pharmacology , MERRF Syndrome/metabolism , Mitochondria/metabolism , Proteins/metabolism , RNA Processing, Post-Transcriptional/drug effects , RNA, Transfer/chemistry , Adenosine/analogs & derivatives , Adenosine/chemistry , Adenosine/metabolism , Apoptosis Regulatory Proteins , Base Pairing , Bicarbonates/metabolism , CRISPR-Cas Systems , Carbon Dioxide/metabolism , Cell Line , Cell Respiration , Fibroblasts/drug effects , Fibroblasts/metabolism , Fibroblasts/pathology , GTP-Binding Proteins/genetics , GTP-Binding Proteins/metabolism , Gene Deletion , HEK293 Cells , HT29 Cells , HeLa Cells , Humans , MERRF Syndrome/genetics , MERRF Syndrome/pathology , Mitochondria/pathology , Models, Biological , Myoblasts/drug effects , Myoblasts/metabolism , Myoblasts/pathology , Nucleic Acid Conformation , Proteins/genetics , RNA, Transfer/genetics , RNA, Transfer/metabolism , RNA-Binding Proteins/genetics , RNA-Binding Proteins/metabolism
8.
Orv Hetil ; 158(12): 468-471, 2017 Mar.
Article in Hungarian | MEDLINE | ID: mdl-28328248

ABSTRACT

This article presents the case of a 62-year-old mother and her 41-year-old daughter, who have had severe neurological symptoms for a few decades. After a long investigation period the definite diagnosis of MERRF syndrome was confirmed. After DNA isolation from our patient's blood sample we examined the mitochondrial DNA with direct sequencing. An adenine-guanine substitution was detected in the tRNA gene at position 8344, based on the sequence ferogram the heteroplasmy was over 90%. The clinical phenotype was not clearly characteristic for MERRF syndrome, adult-onset and lipomas are not typical in this disease. In our case report we would like to draw attention to the great phenotypic variation of the mitochondrial diseases and we emphasize that these disorders are underdiagnosed in Hungary even today. Orv. Hetil., 2017, 158(12), 468-471.


Subject(s)
DNA, Mitochondrial/analysis , MERRF Syndrome/diagnosis , MERRF Syndrome/genetics , Adult , Female , Humans , MERRF Syndrome/metabolism , Middle Aged , Mutation , Phenotype
9.
J Neuromuscul Dis ; 3(3): 363-379, 2016 08 30.
Article in English | MEDLINE | ID: mdl-27854233

ABSTRACT

BACKGROUND: Mitochondrial encephalomyopathies are severe, relentlessly progressive conditions and there are very few effective therapies available to date. We have previously suggested that in two rare forms of reversible mitochondrial disease (reversible infantile respiratory chain deficiency and reversible infantile hepatopathy) supplementation with L-cysteine can improve mitochondrial protein synthesis, since cysteine is required for the 2-thiomodification of mitochondrial tRNAs. OBJECTIVES: We studied whether supplementation with L-cysteine or N-acetyl-cysteine (NAC) results in any improvement of the mitochondrial function in vitro in fibroblasts of patients with different genetic forms of abnormal mitochondrial translation. METHODS: We studied in vitro in fibroblasts of patients carrying the common m.3243A>G and m.8344A>G mutations or autosomal recessive mutations in genes affecting mitochondrial translation, whether L-cysteine or N-acetyl-cysteine supplementation have an effect on mitochondrial respiratory chain function. RESULTS: Here we show that supplementation with L-cysteine, but not with N-acetyl-cysteine partially rescues the mitochondrial translation defect in vitro in fibroblasts of patients carrying the m.3243A>G and m.8344A>G mutations. In contrast, N-acetyl-cysteine had a beneficial effect on mitochondrial translation in TRMU and MTO1 deficient fibroblasts. CONCLUSIONS: Our results suggest that L-cysteine or N-acetyl-cysteine supplementation may be a potential treatment for selected subgroups of patients with mitochondrial translation deficiencies. Further studies are needed to explore the full potential of cysteine supplementation as a treatment for patients with mitochondrial disease.


Subject(s)
Acetylcysteine/pharmacology , Cysteine/pharmacology , Fibroblasts/drug effects , MELAS Syndrome/metabolism , MERRF Syndrome/metabolism , Mitochondria/drug effects , Mitochondrial Diseases/metabolism , Protein Biosynthesis/drug effects , Carrier Proteins/genetics , Cyclooxygenase 2/genetics , Dietary Supplements , Fibroblasts/metabolism , Humans , In Vitro Techniques , Mitochondria/metabolism , Mitochondrial Proteins/genetics , Mutation , Neoplasm Proteins/genetics , Oxygen Consumption/drug effects , RNA-Binding Proteins , tRNA Methyltransferases/genetics
10.
Biochim Biophys Acta ; 1860(9): 1864-76, 2016 09.
Article in English | MEDLINE | ID: mdl-27155576

ABSTRACT

BACKGROUND: The Coq protein complex assembled from several Coq proteins is critical for coenzyme Q6 (CoQ6) biosynthesis in yeast. Secondary CoQ10 deficiency is associated with mitochondrial DNA (mtDNA) mutations in patients. We previously demonstrated that carbonyl cyanide-p-trifluoromethoxyphenylhydrazone (FCCP) suppressed CoQ10 levels and COQ5 protein maturation in human 143B cells. METHODS: This study explored the putative COQ protein complex in human cells through two-dimensional blue native-polyacrylamide gel electrophoresis and Western blotting to investigate its status in 143B cells after FCCP treatment and in cybrids harboring the mtDNA mutation that caused myoclonic epilepsy with ragged-red fibers (MERRF) syndrome. Ubiquinol-10 and ubiquinone-10 levels were detected by high-performance liquid chromatography. Mitochondrial energy status, mRNA levels of various PDSS and COQ genes, and protein levels of COQ5 and COQ9 in cybrids were examined. RESULTS: A high-molecular-weight protein complex containing COQ5, but not COQ9, in the mitochondria was identified and its level was suppressed by FCCP and in cybrids with MERRF mutation. That was associated with decreased mitochondrial membrane potential and mitochondrial ATP production. Total CoQ10 levels were decreased under both conditions, but the ubiquinol-10:ubiquinone-10 ratio was increased in mutant cybrids. The expression of COQ5 was increased but COQ5 protein maturation was suppressed in the mutant cybrids. CONCLUSIONS: A novel COQ5-containing protein complex was discovered in human cells. Its destabilization was associated with reduced CoQ10 levels and mitochondrial energy deficiency in human cells treated with FCCP or exhibiting MERRF mutation. GENERAL SIGNIFICANCE: The findings elucidate a possible mechanism for mitochondrial dysfunction-induced CoQ10 deficiency in human cells.


Subject(s)
MERRF Syndrome/metabolism , Methyltransferases/metabolism , Mitochondria/metabolism , Mitochondrial Proteins/metabolism , Ubiquinone/analogs & derivatives , Ataxia/genetics , Ataxia/metabolism , Carbonyl Cyanide p-Trifluoromethoxyphenylhydrazone/pharmacology , Cell Line , DNA, Mitochondrial/genetics , Humans , MERRF Syndrome/genetics , Membrane Potential, Mitochondrial/drug effects , Membrane Potential, Mitochondrial/genetics , Methyltransferases/genetics , Mitochondria/drug effects , Mitochondria/genetics , Mitochondrial Diseases/genetics , Mitochondrial Diseases/metabolism , Mitochondrial Proteins/genetics , Muscle Weakness/genetics , Muscle Weakness/metabolism , Mutation/drug effects , Mutation/genetics , RNA, Messenger/genetics , Ubiquinone/deficiency , Ubiquinone/genetics , Ubiquinone/metabolism
11.
Sci Rep ; 6: 23661, 2016 Mar 30.
Article in English | MEDLINE | ID: mdl-27025901

ABSTRACT

Myoclonus epilepsy associated with ragged-red fibers (MERRF) is a mitochondrial disorder characterized by myoclonus epilepsy, generalized seizures, ataxia and myopathy. MERRF syndrome is primarily due to an A to G mutation at mtDNA 8344 that disrupts the mitochondrial gene for tRNA(Lys). However, the detailed mechanism by which this tRNA(Lys) mutation causes mitochondrial dysfunction in cardiomyocytes or neurons remains unclear. In this study, we generated human induced pluripotent stem cells (hiPSCs) that carry the A8344G genetic mutation from patients with MERRF syndrome. Compared with mutation-free isogenic hiPSCs, MERRF-specific hiPSCs (MERRF-hiPSCs) exhibited reduced oxygen consumption, elevated reactive oxygen species (ROS) production, reduced growth, and fragmented mitochondrial morphology. We sought to investigate the induction ability and mitochondrial function of cardiomyocyte-like cells differentiated from MERRF-hiPSCs. Our data demonstrate that that cardiomyocyte-like cells (MERRF-CMs) or neural progenitor cells (MERRF-NPCs) differentiated from MERRF-iPSCs also exhibited increased ROS levels and altered antioxidant gene expression. Furthermore, MERRF-CMs or -NPCs contained fragmented mitochondria, as evidenced by MitoTracker Red staining and transmission electron microscopy. Taken together, these findings showed that MERRF-hiPSCs and MERRF-CM or -NPC harboring the A8344G genetic mutation displayed contained mitochondria with an abnormal ultrastructure, produced increased ROS levels, and expressed upregulated antioxidant genes.


Subject(s)
Induced Pluripotent Stem Cells/metabolism , MERRF Syndrome/metabolism , Reactive Oxygen Species/metabolism , Adolescent , Cell Dedifferentiation , Cell Differentiation , Cells, Cultured , DNA, Mitochondrial/genetics , Female , Humans , Induced Pluripotent Stem Cells/pathology , MERRF Syndrome/pathology , Mitochondria, Heart/metabolism , Mitochondria, Heart/pathology , Myocytes, Cardiac/metabolism , Myocytes, Cardiac/pathology , Organelle Shape , Oxygen Consumption , Point Mutation
12.
Hum Mol Genet ; 25(5): 903-15, 2016 Mar 01.
Article in English | MEDLINE | ID: mdl-26721932

ABSTRACT

Mutations in mitochondrial (mt) genes coding for mt-tRNAs are responsible for a range of syndromes, for which no effective treatment is available. We recently showed that the carboxy-terminal domain (Cterm) of human mt-leucyl tRNA synthetase rescues the pathologic phenotype associated either with the m.3243A>G mutation in mt-tRNA(Leu(UUR)) or with mutations in the mt-tRNA(Ile), both of which are aminoacylated by Class I mt-aminoacyl-tRNA synthetases (mt-aaRSs). Here we show, by using the human transmitochondrial cybrid model, that the Cterm is also able to improve the phenotype caused by the m.8344A>G mutation in mt-tRNA(Lys), aminoacylated by a Class II aaRS. Importantly, we demonstrate that the same rescuing ability is retained by two Cterm-derived short peptides, ß30_31 and ß32_33, which are effective towards both the m.8344A>G and the m.3243A>G mutations. Furthermore, we provide in vitro evidence that these peptides bind with high affinity wild-type and mutant human mt-tRNA(Leu(UUR)) and mt-tRNA(Lys), and stabilize mutant mt-tRNA(Leu(UUR)). In conclusion, we demonstrate that small Cterm-derived peptides can be effective tools to rescue cellular defects caused by mutations in a wide range of mt-tRNAs.


Subject(s)
Amino Acyl-tRNA Synthetases/genetics , Mitochondria/drug effects , Osteoblasts/drug effects , Peptides/pharmacology , Point Mutation , Amino Acid Sequence , Amino Acyl-tRNA Synthetases/metabolism , Apoptosis/drug effects , Cell Line, Tumor , Cell Proliferation/drug effects , Gene Expression , Humans , MELAS Syndrome/genetics , MELAS Syndrome/metabolism , MELAS Syndrome/pathology , MERRF Syndrome/genetics , MERRF Syndrome/metabolism , MERRF Syndrome/pathology , Mitochondria/metabolism , Mitochondria/pathology , Models, Molecular , Molecular Sequence Data , Osteoblasts/metabolism , Osteoblasts/pathology , Peptides/chemical synthesis , Phenotype , Protein Domains , Protein Structure, Secondary , RNA, Transfer, Leu/metabolism , RNA, Transfer, Lys/metabolism , Sequence Alignment
13.
Lik Sprava ; (11): 29-39, 2014 Nov.
Article in Ukrainian | MEDLINE | ID: mdl-25528830

ABSTRACT

Defined involvement lesions of the digestive system of clinical manifestations of mitochondrial dysfunction associated with both point mutations and polymorphism of mitochondrial DNA. The nature of the clinical signs of mtDNA polymorphisms carriers--multi organical, a progressive, clinical polymorphism, genetic heterogeneity with predominant involvement of energotropic bodies (cerebrum, cordis, hepatic). Set individual nosological forms of mitochondrial dysfunctions--syndromes Leia, Leber, Cairns, Sarah, MERRF, MELAS, NARP, MNGIE confirmed by clinical and genetic, morphological, biochemical, enzymatic, molecular genetics methods. It was found that 84-88% of these syndromes involving the violation of the digestive system with varying degrees of injury. This damage will be the first in the complex chain signs recovery which determines the direction of early rehabilitation.


Subject(s)
DNA, Mitochondrial/genetics , Gastrointestinal Diseases/genetics , Genetic Pleiotropy , Mitochondria/genetics , Adult , DNA, Mitochondrial/metabolism , Female , Gastrointestinal Diseases/complications , Gastrointestinal Diseases/metabolism , Gastrointestinal Diseases/pathology , Genome, Mitochondrial , Humans , Intestinal Pseudo-Obstruction/complications , Intestinal Pseudo-Obstruction/genetics , Intestinal Pseudo-Obstruction/metabolism , Intestinal Pseudo-Obstruction/pathology , Leigh Disease/complications , Leigh Disease/genetics , Leigh Disease/metabolism , Leigh Disease/pathology , MELAS Syndrome/complications , MELAS Syndrome/genetics , MELAS Syndrome/metabolism , MELAS Syndrome/pathology , MERRF Syndrome/complications , MERRF Syndrome/genetics , MERRF Syndrome/metabolism , MERRF Syndrome/pathology , Male , Mitochondria/metabolism , Mitochondria/pathology , Mitochondrial Encephalomyopathies/complications , Mitochondrial Encephalomyopathies/genetics , Mitochondrial Encephalomyopathies/metabolism , Mitochondrial Encephalomyopathies/pathology , Mitochondrial Myopathies/complications , Mitochondrial Myopathies/genetics , Mitochondrial Myopathies/metabolism , Mitochondrial Myopathies/pathology , Muscular Dystrophy, Oculopharyngeal , Ophthalmoplegia/congenital , Optic Atrophy, Hereditary, Leber/complications , Optic Atrophy, Hereditary, Leber/genetics , Optic Atrophy, Hereditary, Leber/metabolism , Optic Atrophy, Hereditary, Leber/pathology , Point Mutation , Polymorphism, Genetic , Retinitis Pigmentosa/complications , Retinitis Pigmentosa/genetics , Retinitis Pigmentosa/metabolism , Retinitis Pigmentosa/pathology
14.
Biochem J ; 459(1): 149-60, 2014 Apr 01.
Article in English | MEDLINE | ID: mdl-24476000

ABSTRACT

MERRF (myoclonus epilepsy associated with ragged-red fibres) is a maternally inherited mitochondrial encephalomyopathy with various syndromes involving both muscular and nervous systems. The most common mutation in MERRF syndrome, the A8344G mutation in mtDNA, has been associated with severe defects in the respiratory function of mitochondria. In the present study, we show that there is a significant decrease in CA8 (carbonic anhydrase-related protein VIII) in cybrids harbouring the MERRF A8344G mutation. CA8 deficiency and mutations were found to be associated with a distinctive lifelong gait disorder in wdl (Waddles) mice and novel syndromes characterized by cerebellar ataxia and mental retardation in humans. The results of the present study showed that overexpression of CA8 in MERRF cybrids significantly decreased cell death induced by STS (staurosporine) treatment, suggesting a protective function of CA8 in cells harbouring the A8344G mutation of mtDNA. Interestingly, an increase in the formation of LC3-II (microtubule-associated protein 1 light chain 3-II) was found in the cybrids with down-regulated CA8 expression, suggesting that reduced expression of CA8 leads to autophagy activation. Furthermore, cybrids exhibiting down-regulated CA8 showed increased cytosolic Ca2+ signals and reduced levels of phospho-Akt compared with those in the cybrids with overexpressed CA8, indicating that phospho-Akt is involved in the protection of cells by CA8. Our findings suggest that CA8 is involved in the autophagic pathway and may have a protective role in cultured cells from patients with MERRF. Targeting CA8 and the downstream autophagic pathway might help develop therapeutic agents for treatment of MERRF syndrome in the future.


Subject(s)
Biomarkers, Tumor/genetics , DNA, Mitochondrial/genetics , MERRF Syndrome/genetics , Mutation/physiology , Biomarkers, Tumor/biosynthesis , Cell Death/genetics , Cell Line , DNA, Mitochondrial/biosynthesis , Humans , MERRF Syndrome/metabolism
15.
Neurosignals ; 21(3-4): 160-73, 2013.
Article in English | MEDLINE | ID: mdl-23006856

ABSTRACT

We explored the feasibility of mitochondrial therapy using the cell-penetrating peptide Pep-1 to transfer mitochondrial DNA (mtDNA) between cells and rescue a cybrid cell model of the mitochondrial disease myoclonic epilepsy with ragged-red fibres (MERRF) syndrome. Pep-1-conjugated wild-type mitochondria isolated from parent cybrid cells incorporating a mitochondria-specific tag were used as donors for mitochondrial delivery into MERRF cybrid cells (MitoB2) and mtDNA-depleted Rho-zero cells (Mitoρ°). Forty-eight hours later, translocation of Pep-1-labelled mitochondria into the mitochondrial regions of MitoB2 and Mitoρ° host cells was observed (delivery efficiencies of 77.48 and 82.96%, respectively). These internalized mitochondria were maintained for at least 15 days in both cell types and were accompanied by mitochondrial function recovery and cell survival by preventing mitochondria-dependent cell death. Mitochondrial homeostasis analyses showed that peptide-mediated mitochondrial delivery (PMD) also increased mitochondrial biogenesis in both cell types, but through distinct regulatory pathways involving mitochondrial dynamics. Dramatic decreases in mitofusin-2 (MFN2) and dynamin-related protein 1/fission 1 were observed in MitoB2 cells, while Mitoρ° cells showed a significant increase in optic atrophy 1 and MFN2. These findings suggest that PMD can be used as a potential therapeutic intervention for mitochondrial disorders.


Subject(s)
DNA, Mitochondrial/genetics , Gene Transfer Techniques , MERRF Syndrome/genetics , Mitochondria/genetics , Cell-Penetrating Peptides , DNA, Mitochondrial/metabolism , Humans , MERRF Syndrome/metabolism , Mitochondria/metabolism
16.
FEBS J ; 279(16): 2987-3001, 2012 Aug.
Article in English | MEDLINE | ID: mdl-22742457

ABSTRACT

Mitochondrial DNA (mtDNA) mutations are associated with a large number of neuromuscular diseases. Myoclonus epilepsy with ragged-red fibers (MERRF) syndrome is a mitochondrial disease inherited through the maternal lineage. The most common mutation in MERRF syndrome, the A8344G mutation of mtDNA, is associated with severe defects in mitochondrial protein synthesis, which impair the assembly and function of the respiratory chain. We have previously shown that there is a decreased level of heat shock protein 27 (HSP27) in lymphoblastoid cells derived from a MERRF patient and in cytoplasmic hybrids (cybrids) harboring the A8344G mutation of mtDNA. In the present study, we found a dramatic decrease in the level of phosphorylated HSP27 (p-HSP27) in the mutant cybrids. Even though the steady-state level of p-HSP27 was reduced in the mutant cybrids, normal phosphorylation and dephosphorylation were observed upon exposure to stress, indicating normal kinase and phosphatase activities. To explore the roles that p-HSP27 may play, transfection experiments with HSP27 mutants, in which three specific serines were replaced with alanine or aspartic acid, showed that the phosphomimicking HSP27 desensitized mutant cybrids to apoptotic stress induced by staurosporine (STS). After heat shock stress, p-HSP27 was found to enter the nucleus immediately, and with a prolonged interval of recovery, p-HSP27 returned to the cytoplasm in wild-type cybrids but not in mutant cybrids. The translocation of p-HSP27 was correlated with cell viability, as shown by the increased number of apoptotic cells after p-HSP27 returned to the cytoplasm. In summary, our results demonstrate that p-HSP27 provides significant protection when cells are exposed to different stresses in the cell model of MERRF syndrome. Therapeutic agents targeting anomalous HSP27 phosphorylation might represent a potential treatment for mitochondrial diseases.


Subject(s)
HSP27 Heat-Shock Proteins/physiology , MERRF Syndrome/genetics , DNA, Mitochondrial/genetics , HSP27 Heat-Shock Proteins/genetics , Heat-Shock Proteins , Humans , MERRF Syndrome/metabolism , Molecular Chaperones , Mutation , Phosphorylation , Staurosporine/pharmacology , Stress, Physiological
17.
Biochim Biophys Acta ; 1822(2): 233-47, 2012 Feb.
Article in English | MEDLINE | ID: mdl-22001850

ABSTRACT

We report that the energy metabolism shifts to anaerobic glycolysis as an adaptive response to oxidative stress in the primary cultures of skin fibroblasts from patients with MERRF syndrome. In order to unravel the molecular mechanism involved in the alteration of energy metabolism under oxidative stress, we treated normal human skin fibroblasts (CCD-966SK cells) with sub-lethal doses of H(2)O(2). The results showed that several glycolytic enzymes including hexokinase type II (HK II), lactate dehydrogenase (LDH) and glucose transporter 1 (GLUT1) were up-regulated in H(2)O(2)-treated normal skin fibroblasts. In addition, the glycolytic flux of skin fibroblasts was increased by H(2)O(2) in a dose-dependent manner through the activation of AMP-activated protein kinase (AMPK) and phosphorylation of its downstream target, phosphofructokinase 2 (PFK2). Moreover, we found that the AMPK-mediated increase of glycolytic flux by H(2)O(2) was accompanied by an increase of intracellular NADPH content. By treatment of the cells with glycolysis inhibitors, an AMPK inhibitor or genetic knockdown of AMPK, respectively, the H(2)O(2)-induced increase of NADPH was abrogated leading to the overproduction of intracellular ROS and cell death. Significantly, we showed that phosphorylation levels of AMPK and glycolysis were up-regulated to confer an advantage of survival for MERRF skin fibroblasts. Taken together, our findings suggest that the increased production of NADPH by AMPK-mediated increase of the glycolytic flux contributes to the adaptation of MERRF skin fibroblasts and H(2)O(2)-treated normal skin fibroblasts to oxidative stress.


Subject(s)
AMP-Activated Protein Kinases/metabolism , MERRF Syndrome/metabolism , MERRF Syndrome/pathology , Oxidative Stress/physiology , Adult , Antioxidants/metabolism , Cell Death/drug effects , Cell Death/physiology , Cell Line , Cell Respiration/drug effects , Cell Respiration/physiology , Cell Survival/drug effects , Cell Survival/physiology , Cells, Cultured , Energy Metabolism , Fibroblasts/drug effects , Fibroblasts/metabolism , Glucose Transporter Type 1/metabolism , Glycolysis , Hexokinase/metabolism , Humans , Hydrogen Peroxide/pharmacology , L-Lactate Dehydrogenase/metabolism , NADP/metabolism , Oxidative Stress/drug effects , Phosphofructokinase-2/metabolism , Phosphorylation , Reactive Oxygen Species/metabolism , Skin/drug effects , Skin/metabolism , Up-Regulation/drug effects , Young Adult
18.
Wiley Interdiscip Rev RNA ; 2(3): 376-86, 2011.
Article in English | MEDLINE | ID: mdl-21957023

ABSTRACT

Mitochondrial DNA mutations that cause mitochondrial dysfunction are responsible for a wide spectrum of human diseases, referred to as mitochondrial diseases. Pathogenic point mutations are found frequently in genes encoding mitochondrial (mt) tRNAs, indicating that impaired functioning of mutant mt tRNAs is the primary cause of mitochondrial dysfunction. Our previous studies revealed the absence of posttranscriptional taurine modification at the anticodon wobble uridine in mutant mt tRNAs isolated from cells derived from patients with two major classes of mitochondrial diseases, MELAS (mitochondrial myopathy, encephalopathy, lactic acidosis, and stroke-like episodes) and MERRF (myoclonus epilepsy associated with ragged red fibers). Defective taurine modification of the mutant mt tRNAs results in a deficiency in protein synthesis as the cognate codons of the mutant mt tRNA cannot be decoded. These findings represent the first evidence of a molecular pathogenesis caused by an RNA modification disorder.


Subject(s)
Mitochondrial Diseases/genetics , Mitochondrial Diseases/metabolism , RNA Processing, Post-Transcriptional , RNA, Transfer/genetics , RNA, Transfer/metabolism , RNA/genetics , RNA/metabolism , Taurine/metabolism , Base Sequence , Humans , MELAS Syndrome/etiology , MELAS Syndrome/genetics , MELAS Syndrome/metabolism , MERRF Syndrome/etiology , MERRF Syndrome/genetics , MERRF Syndrome/metabolism , Mitochondrial Diseases/etiology , Models, Biological , Models, Molecular , Molecular Sequence Data , Nucleic Acid Conformation , Point Mutation , RNA/chemistry , RNA Stability , RNA, Mitochondrial , RNA, Transfer/chemistry , Taurine/chemistry
19.
Am J Hum Genet ; 88(4): 494-8, 2011 Apr 08.
Article in English | MEDLINE | ID: mdl-21473984

ABSTRACT

Because the mtDNA amount remains stable in the early embryo until uterine implantation, early human development is completely dependent on the mtDNA pool of the mature oocyte. Both quantitative and qualitative mtDNA defects therefore may negatively impact oocyte competence or early embryonic development. However, nothing is known about segregation of mutant and wild-type mtDNA molecules during human meiosis. To investigate this point, we compared the mutant levels in 51 first polar bodies (PBs) and their counterpart (oocytes, blastomeres, or whole embryos), at risk of having (1) the "MELAS" m.3243A>G mutation in MT-TL1 (n = 30), (2) the "MERRF" m.8344A>G mutation in MT-TK (n = 15), and (3) the m.9185T>G mutation located in MT-ATP6 (n = 6). Seven out of 51 of the PBs were mutation free and had homoplasmic wild-type counterparts. In the heteroplasmic PBs, measurement of the mutant load was a rough estimate of the counterpart mutation level (R(2) = 0.52), and high mutant-load differentials between the two populations were occasionally observed (ranging from -34% to +34%). The mutant-load differentials between the PB and its counterpart were higher in highly mutated PBs, suggestive of a selection process acting against highly mutated cells during gametogenesis or early embryonic development. Finally, individual discrepancies in mutant loads between PBs and their counterparts make PB-based preconception diagnosis unreliable for the prevention of mtDNA disorder transmission. Such differences were not observed in animal models, and they emphasize the need to conduct thorough studies on mtDNA segregation in humans.


Subject(s)
Blastomeres/metabolism , DNA, Mitochondrial/genetics , DNA, Mitochondrial/metabolism , Mutation , Oocytes/metabolism , Embryonic Development/genetics , Female , Humans , MELAS Syndrome/diagnosis , MELAS Syndrome/genetics , MELAS Syndrome/metabolism , MERRF Syndrome/diagnosis , MERRF Syndrome/genetics , MERRF Syndrome/metabolism , Male , Meiosis/genetics , Oogenesis/genetics , Pregnancy , Preimplantation Diagnosis
20.
Mol Cell Proteomics ; 10(4): M110.002964, 2011 Apr.
Article in English | MEDLINE | ID: mdl-21156839

ABSTRACT

Mitochondrial diseases (MD) are heterogeneous disorders because of impairment of respiratory chain function leading to oxidative stress. We hypothesized that in MD the vascular endothelium may be affected by increased oxidative/nitrative stress causing a reduction of nitric oxide availability. We therefore, investigated the pathobiology of vasculature in MD patients by assaying the presence of 3-nitrotyrosine in muscle biopsies followed by the proteomic identification of proteins which undergo tyrosine nitration. We then measured the flow-mediated vasodilatation as a proof of altered nitric oxide generation/bioactivity. Here, we show that 3-nitrotyrosine staining is specifically located in the small vessels of muscle tissue and that the reaction is stronger and more evident in a significant percentage of vessels from MD patients as compared with controls. Eleven specific proteins which are nitrated under pathological conditions were identified; most of them are involved in energy metabolism and are located mainly in mitochondria. In MD patients the flow-mediated vasodilatation was reduced whereas baseline arterial diameters, blood flow velocity and endothelium-independent vasodilatation were similar to controls. The present results provide evidence that in MD the vessel wall is a target of increased oxidative/nitrative stress.


Subject(s)
MELAS Syndrome/metabolism , MERRF Syndrome/metabolism , Muscle, Skeletal/blood supply , Tyrosine/analogs & derivatives , Adolescent , Adult , Aged , Base Sequence , Brachial Artery/physiopathology , Case-Control Studies , Deafness/genetics , Deafness/metabolism , Diabetes Mellitus, Type 2/genetics , Diabetes Mellitus, Type 2/metabolism , Endothelium, Vascular/metabolism , Female , Femoral Artery/physiopathology , Humans , Kearns-Sayre Syndrome/genetics , Kearns-Sayre Syndrome/metabolism , MELAS Syndrome/genetics , MERRF Syndrome/genetics , Male , Middle Aged , Mitochondrial Diseases , Muscle, Skeletal/metabolism , Muscle, Smooth, Vascular/metabolism , Nitric Oxide Synthase Type I/metabolism , Nitric Oxide Synthase Type III/metabolism , Point Mutation , Sequence Deletion , Tyrosine/metabolism , Vasodilation
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