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1.
Int J Biol Macromol ; 195: 466-474, 2022 Jan 15.
Article in English | MEDLINE | ID: mdl-34914909

ABSTRACT

Periplaneta americana L. (PA), a type of animal medicine, has been widely used for wound healing in clinical settings. In order to further investigate the bioactive wound healing substances in PA, crude PA protein-polysaccharide complexes were further purified by cellulose DE-52 and Sephadex G100 chromatography in succession. Among these isolated fractions, two fractions eluted by 0.3 M and 0.5 M NaCl with the higher yield, respectively named PaPPc2 and PaPPc3 respectively, were chosen for the wound healing experiments. Mediated by HPGPC, amino acid and monosaccharide composition analysis, circular dichroism spectrum, glycosylation type, FT-IR, and 1H NMR analysis, the characterization of PaPPc2 and PaPPc3 was implemented. And then, the benefits of PaPPcs to promote cell proliferation, migration, and tube formation of HUVECs were determined in vitro, indicated these fractions would facilitate angiogenesis. Finally, as proof of concept, PaPPc2 and PaPPc3 were employed to accelerate the acute wounds of diabetic mice, involving in increase blood vessels and the amounts of angiogenesis-related cytokines (α-SMA, VEGF, and CD31). In short, this study provides an experimental basis to demonstrate the protein-polysaccharide complexes of Periplaneta americana L. as its wound healing bioactive substances.


Subject(s)
Biocompatible Materials , Insect Proteins/chemistry , Macromolecular Substances/chemistry , Macromolecular Substances/pharmacology , Periplaneta/chemistry , Polysaccharides/chemistry , Wound Healing , Amino Acids/chemistry , Animals , Cell Line , Chemical Phenomena , Diabetes Mellitus, Experimental , Humans , Macromolecular Substances/isolation & purification , Medicine, Traditional , Mice , Monosaccharides/chemistry , Spectrum Analysis
2.
Int J Biol Macromol ; 195: 598-608, 2022 Jan 15.
Article in English | MEDLINE | ID: mdl-34896471

ABSTRACT

In this study, two acidic Biluochun Tea polysaccharides (BTP-A11 and BTP-A12) were investigated comparatively, which mainly consisted of Rha, Ara, Gal and GalA, possibly suggesting their pectic nature. Structurally, their galacturonan backbones composed of →4)-α-D-GalpA-(1→ and →2)-α-L-Rhap-(1→ were revealed similar, while Ara- and Gal-based branches attached to the O-2 of →2)-α-L-Rhap-(1→ were in distinctive types, proportions, extensibilities and branching degrees. This could lead to their different macromolecular characteristics, where BTP-A11 with higher Mw presented a more hyper-branched chain conformation and relatively higher structural flexibility/compactness, thereby resulting in a lower exclusion effect and an insufficient hydrodynamic volume. Besides, better radical scavenging activities in vitro were also determined for Gal-enriched BTP-A11, where a larger surface area containing more H-donating groups were related to its higher Mw, more hyper-branched conformation, lower DM and higher DA. Therefore, the understanding of structure-property-activity relationships was improved to some degrees for acidic Biluochun Tea polysaccharides, which could be potentially required for more applications in food, medical and cosmetic fields.


Subject(s)
Polysaccharides/chemistry , Polysaccharides/pharmacology , Tea/chemistry , Chemical Fractionation , Chemical Phenomena , Free Radical Scavengers/chemistry , Free Radical Scavengers/isolation & purification , Free Radical Scavengers/pharmacology , Macromolecular Substances/chemistry , Macromolecular Substances/isolation & purification , Macromolecular Substances/pharmacology , Methylation , Molecular Structure , Polysaccharides/isolation & purification , Spectrum Analysis , Structure-Activity Relationship
3.
Int J Mol Sci ; 22(13)2021 Jun 22.
Article in English | MEDLINE | ID: mdl-34206440

ABSTRACT

Biomolecular condensates formed via liquid-liquid phase separation (LLPS) are increasingly being shown to play major roles in cellular self-organization dynamics in health and disease. It is well established that macromolecular crowding has a profound impact on protein interactions, particularly those that lead to LLPS. Although synthetic crowding agents are used during in vitro LLPS experiments, they are considerably different from the highly crowded nucleo-/cytoplasm and the effects of in vivo crowding remain poorly understood. In this work, we applied computational modeling to investigate the effects of macromolecular crowding on LLPS. To include biologically relevant LLPS dynamics, we extended the conventional Cahn-Hilliard model for phase separation by coupling it to experimentally derived macromolecular crowding dynamics and state-dependent reaction kinetics. Through extensive field-theoretic computer simulations, we show that the inclusion of macromolecular crowding results in late-stage coarsening and the stabilization of relatively smaller condensates. At a high crowding concentration, there is an accelerated growth and late-stage arrest of droplet formation, effectively resulting in anomalous labyrinthine morphologies akin to protein gelation observed in experiments. These results not only elucidate the crowder effects observed in experiments, but also highlight the importance of including state-dependent kinetics in LLPS models, and may help in designing further experiments to probe the intricate roles played by LLPS in self-organization dynamics of cells.


Subject(s)
Liquid-Liquid Extraction/methods , Macromolecular Substances/chemistry , Macromolecular Substances/isolation & purification , Algorithms , Humans , Kinetics , Models, Theoretical
4.
Int J Biol Macromol ; 171: 398-413, 2021 Feb 28.
Article in English | MEDLINE | ID: mdl-33422516

ABSTRACT

Diatoms are ubiquitous, biologically widespread, and have global significance due to their unique silica cell wall composition and noteworthy applied aspects. Diatoms are being extensively exploited for environmental monitoring, reconstruction, and stratigraphic correlation. However, considering all the rich elements of diatoms biology, the current literature lacks sufficient information on the therapeutic attributes and applied aspects of biological macromolecules from diatoms, hampering added advances in all aspects of diatom biology. Diatoms offer numerous high-value compounds, such as fatty acids, polysaccharides, polypeptides, pigments, and polyphenols. Diatoms with a high content of PUFA's are targets of transformation into high-value products through microalgal technologies due to their wide application and growing market as nutraceuticals and food supplements. Diatoms are renewable biomaterial, which can be used to develop drug delivery systems due to biocompatibility, surface area, cost-effective ratio, and ease in surface modifications. Innovative approaches are needed to envisage cost-effective ways for the isolation of bioactive compounds, enhance productivity, and elucidate the detailed mechanism of action. This review spotlights the notable applications of diatoms and their biologically active constituents, such as fucoxanthin and omega 3 fatty acids, among others with unique structural and functional entities.


Subject(s)
Diatoms/chemistry , Macromolecular Substances/therapeutic use , Dietary Supplements , Drug Delivery Systems , Fatty Acids/isolation & purification , Fatty Acids/therapeutic use , Humans , Macromolecular Substances/economics , Macromolecular Substances/isolation & purification , Peptides/isolation & purification , Peptides/therapeutic use , Polyphenols/isolation & purification , Polyphenols/therapeutic use , Polysaccharides/isolation & purification , Polysaccharides/therapeutic use , Protective Agents/therapeutic use , Sterols/isolation & purification , Sterols/therapeutic use , Xanthophylls/isolation & purification , Xanthophylls/therapeutic use
5.
Curr Protoc Mol Biol ; 133(1): e131, 2020 12.
Article in English | MEDLINE | ID: mdl-33351266

ABSTRACT

The biochemical and biophysical investigation of proteins, nucleic acids, and the assemblies that they form yields essential information to understand complex systems. Analytical ultracentrifugation (AUC) represents a broadly applicable and information-rich method for investigating macromolecular characteristics such as size, shape, stoichiometry, and binding properties, all in the true solution-state environment that is lacking in most orthogonal methods. Despite this, AUC remains underutilized relative to its capabilities and potential in the fields of biochemistry and molecular biology. Although there has been a rapid development of computing power and AUC analysis tools in this millennium, fewer advancements have occurred in development of new applications of the technique, leaving these powerful instruments underappreciated and underused in many research institutes. With AUC previously limited to absorbance and Rayleigh interference optics, the addition of fluorescence detection systems has greatly enhanced the applicability of AUC to macromolecular systems that are traditionally difficult to characterize. This overview provides a resource for novices, highlighting the potential of AUC and encouraging its use in their research, as well as for current users, who may benefit from our experience. We discuss the strengths of fluorescence-detected AUC and demonstrate the power of even simple AUC experiments to answer practical and fundamental questions about biophysical properties of macromolecular assemblies. We address the development and utility of AUC, explore experimental design considerations, present case studies investigating properties of biological macromolecules that are of common interest to researchers, and review popular analysis approaches. © 2020 The Authors.


Subject(s)
Macromolecular Substances/isolation & purification , Ultracentrifugation/methods , Algorithms , Data Analysis , Macromolecular Substances/analysis , Macromolecular Substances/chemistry , Models, Theoretical , Software , Spectrometry, Fluorescence/methods , Ultracentrifugation/instrumentation
6.
PLoS One ; 15(10): e0239422, 2020.
Article in English | MEDLINE | ID: mdl-33031432

ABSTRACT

Arachidonic acid (ARA) is an integral constituent of the biological cell membrane, conferring it with fluidity and flexibility, which are necessary for the function of all cells, especially nervous system, skeletal muscle, and immune system. Codium species biosynthesize sulfated polysaccharides with very distinct structural features. Some of them have different biological activities with great potential in pharmaceutical applications. In this study, anionic macromolecules extracted from Codium fragile were investigated for their cooperative immune-enhancing activities with ARA. The cooperation between ARA and Codium resulted in increased, dose-dependent nitric oxide production and iNOS gene expression. In addition, co-treatment of ARA and Codium effectively increased pro-inflammatory cytokines (IL-1ß, IL-6, and TNF-α), compared with Codium alone. We also demonstrated that the expression of COX-2 mRNA was also increased, which is responsible for the production of inflammatory mediator prostaglandins and their metabolites. Compared to the Codium group, the co-treatment of Codium with ARA enhanced the phosphorylation of nuclear factor-κB p-65, p38, and extracellular signal-related kinase 1/2, indicating that this combination stimulated immune response through nuclear factor-κB and mitogen-activated protein kinase pathways. These results indicated that the coordination of arachidonic acid with polysaccharide extracted from seaweed may be a potential source of immunomodulatory molecules.


Subject(s)
Arachidonic Acid/pharmacology , Chlorophyta/chemistry , Immunologic Factors/pharmacology , Macromolecular Substances/pharmacology , Animals , Drug Interactions , Gene Expression Regulation/drug effects , Gene Expression Regulation/immunology , Immunologic Factors/chemistry , Immunologic Factors/isolation & purification , MAP Kinase Signaling System/drug effects , Macromolecular Substances/chemistry , Macromolecular Substances/isolation & purification , Mice , NF-kappa B/metabolism , Nitric Oxide/biosynthesis , RAW 264.7 Cells
7.
Biomolecules ; 10(10)2020 10 15.
Article in English | MEDLINE | ID: mdl-33076409

ABSTRACT

An elevated concentration of fibrinogen in blood is a significant risk factor during many pathological diseases, as it leads to an increase in red blood cells (RBC) aggregation, resulting in hemorheological disorders. Despite the biomedical importance, the mechanisms of fibrinogen-induced RBC aggregation are still debatable. One of the discussed models is the non-specific adsorption of fibrinogen macromolecules onto the RBC membrane, leading to the cells bridging in aggregates. However, recent works point to the specific character of the interaction between fibrinogen and the RBC membrane. Fibrinogen is the major physiological ligand of glycoproteins receptors IIbIIIa (GPIIbIIIa or αIIßß3 or CD41/CD61). Inhibitors of GPIIbIIIa are widely used in clinics for the treatment of various cardiovascular diseases as antiplatelets agents preventing the platelets' aggregation. However, the effects of GPIIbIIIa inhibition on RBC aggregation are not sufficiently well studied. The objective of the present work was the complex multimodal in vitro study of the interaction between fibrinogen and the RBC membrane, revealing the role of GPIIbIIIa in the specificity of binding of fibrinogen by the RBC membrane and its involvement in the cells' aggregation process. We demonstrate that GPIIbIIIa inhibition leads to a significant decrease in the adsorption of fibrinogen macromolecules onto the membrane, resulting in the reduction of RBC aggregation. We show that the mechanisms underlying these effects are governed by a decrease in the bridging components of RBC aggregation forces.


Subject(s)
Erythrocytes/pathology , Fibrinogen/isolation & purification , Glycoproteins/isolation & purification , Macromolecular Substances/isolation & purification , Erythrocyte Aggregation/genetics , Erythrocytes/chemistry , Erythrocytes/metabolism , Fibrinogen/genetics , Flow Cytometry , Glycophorins , Glycoproteins/chemistry , Glycoproteins/ultrastructure , Humans , Lasers , Macromolecular Substances/chemistry , Macromolecular Substances/ultrastructure , Microfluidics/methods , Optical Tweezers , Platelet Aggregation Inhibitors/chemistry , Platelet Aggregation Inhibitors/pharmacology
8.
J Chromatogr A ; 1629: 461464, 2020 Oct 11.
Article in English | MEDLINE | ID: mdl-32841772

ABSTRACT

Red wine is a complex matrix containing macromolecules such as condensed tannins and polysaccharides. Wine macromolecular components and their interactions have been reported to impact taste properties such as astringency but the colloidal systems formed in wine are not well known. A key prerequisite to characterize these systems is the ability to work under analytical conditions as close as possible to the colloid environment, preserving the sample structure and limiting the denaturation of macromolecular complexes. A method of Asymmetric Flow Field-Flow Fractionation (AF4) coupled with UV detection, multi-angle light scattering (MALS), and differential refractometer index (dRI) (AF4-UV-MALS-dRI) has been developed to analyse macromolecules, including tannins and polysaccharides, and macromolecular complexes, in red wine. This method separates objects according to their hydrodynamic radius and does not require calibration to determine molecular weight (Mw). AF4 can provide native separation of wine colloidal matter while working with simulated wine as mobile phase. The channel was equipped with a 350-µm spacer and the membrane made in regenerated cellulose had a cut-off of 5kDa. Different parameters of crossflow rate were investigated using a generic red wine to optimize separation conditions. Then, purified fractions of polysaccharides and tannins were analysed using the selected AF4 parameters. The comparison of the peaks obtained for these fractions and for the wine sample allowed us to determine the retention time associated with these macromolecules. The AF4 fractogram of wine was divided into four fractions. The first three were assigned to higher Mw tannins coeluted with lower Mw polysaccharides such as rhamnogalacturonan II (F1), to intermediate Mw polysaccharides (F2), and to higher Mw mannoproteins (F3) whereas the last fraction (F4) was not identified. Furthermore, our results have shown that AF4-UV-MALS-dRI could be an efficient technique to separate large size tannins as well as polysaccharides and macromolecular complexes.


Subject(s)
Fractionation, Field Flow/methods , Macromolecular Substances/isolation & purification , Polyphenols/isolation & purification , Wine/analysis , Hydrodynamics , Molecular Weight , Polysaccharides/isolation & purification , Tannins/isolation & purification , Time Factors
9.
Sheng Wu Gong Cheng Xue Bao ; 36(7): 1261-1268, 2020 Jul 25.
Article in Chinese | MEDLINE | ID: mdl-32748583

ABSTRACT

The phenomenon of phase separation of intracellular biological macromolecules is an emerging research field that has received great attention in recent years. As an aggregation and compartment mechanism of cell biochemical reactions, it widely exists in nature and participates in important physiological processes such as gene transcription and regulation, as well as influences organism's response to external stimuli. Disequilibrium of phase separation may lead to the occurrence of some major diseases. Researchers in cross-cutting fields are trying to examine dementia and other related diseases from a new perspective of phase separation, exploring its molecular mechanism and the potential possibility of intervention and treatment. This review intends to introduce the latest research progress in this field, summarize the major research directions, biochemical basis, its relationship with disease occurrence, and giving a future perspective of key problems to focus on.


Subject(s)
Cytoplasm , Macromolecular Substances , Research , Animals , Chemistry Techniques, Analytical/trends , Cytoplasm/chemistry , Cytoplasm/metabolism , Humans , Macromolecular Substances/isolation & purification , Research/trends
10.
Nucleic Acids Res ; 48(15): e90, 2020 09 04.
Article in English | MEDLINE | ID: mdl-32609809

ABSTRACT

Specific genomic functions are dictated by macromolecular complexes (MCs) containing multiple proteins. Affinity purification of these complexes, often using antibodies, followed by mass spectrometry (MS) has revolutionized our ability to identify the composition of MCs. However, conventional immunoprecipitations suffer from contaminating antibody/serum-derived peptides that limit the sensitivity of detection for low-abundant interacting partners using MS. Here, we present AptA-MS (aptamer affinity-mass spectrometry), a robust strategy primarily using a specific, high-affinity RNA aptamer against Green Fluorescent Protein (GFP) to identify interactors of a GFP-tagged protein of interest by high-resolution MS. Utilizing this approach, we have identified the known molecular chaperones that interact with human Heat Shock Factor 1 (HSF1), and observed an increased association with several proteins upon heat shock, including translation elongation factors and histones. HSF1 is known to be regulated by multiple post-translational modifications (PTMs), and we observe both known and new sites of modifications on HSF1. We show that AptA-MS provides a dramatic target enrichment and detection sensitivity in evolutionarily diverse organisms and allows identification of PTMs without the need for modification-specific enrichments. In combination with the expanding libraries of GFP-tagged cell lines, this strategy offers a general, inexpensive, and high-resolution alternative to conventional approaches for studying MCs.


Subject(s)
Aptamers, Nucleotide/chemistry , Heat Shock Transcription Factors/chemistry , Macromolecular Substances/isolation & purification , Mass Spectrometry , Aptamers, Nucleotide/genetics , Green Fluorescent Proteins/genetics , Heat Shock Transcription Factors/genetics , Histones/chemistry , Humans , Immunoprecipitation , Macromolecular Substances/chemistry , Molecular Chaperones/chemistry , Molecular Chaperones/genetics , Peptides/chemistry , Protein Binding , Protein Processing, Post-Translational
11.
Methods Mol Biol ; 2116: 109-116, 2020.
Article in English | MEDLINE | ID: mdl-32221917

ABSTRACT

Immunoprecipitation is a helpful tool to assess interactions between proteins and proteins or nucleic acids (DNA or RNA). Its principle consists in capturing and enriching one or multiple target proteins from a complex sample with a specific antibody conjugated to a solid matrix and isolating the RNA and/or protein molecules associated to those target(s) group of proteins that can be further identified by advanced techniques such as RNA-seq and/or mass spectrometry. Since this technique allows for identifying, mapping, and checking new protein-protein and protein-RNA interactions, its use is very convenient in situations where many proteins remain with their functions uncharacterized, as is the case of the protozoan Trypanosoma cruzi. Here we describe a protocol that is based on the cryogrinding method for cell lysis and the use of antibodies conjugated to magnetic beads to capture and purify protein complexes in a robust and efficient way.


Subject(s)
Immunomagnetic Separation/methods , Immunoprecipitation/methods , Macromolecular Substances/isolation & purification , Trypanosoma cruzi/physiology , Macromolecular Substances/metabolism , Mass Spectrometry/methods , Parasitology/methods , Protein Interaction Mapping , Protozoan Proteins/isolation & purification , Protozoan Proteins/metabolism , RNA, Protozoan/isolation & purification , RNA, Protozoan/metabolism
12.
Int J Biol Macromol ; 151: 1-18, 2020 May 15.
Article in English | MEDLINE | ID: mdl-32035954

ABSTRACT

Marine biome exhibits an immense essence of excellence and enriched with high-value bioactive compounds of therapeutic and biomedical value. During the past several years, an array of biologically active molecules has been extracted/isolated and purified from numerous sources of marine origin with the aid of distinct techniques and methodologies for newer applications. The growing demand for bioactive molecules with unique functionalities in various industrial divisions, such as therapeutic sectors and biomedical, has endorsed the necessity for highly suitable and standardized strategies to extract these bioactive components using a state-of-the-art and inexpensive measures. This is also because many in practice conventional extraction methodologies suffer from processing limitations and low-yield issues. Besides that, other major issues include (i) decrease efficacy, (ii) excessive energy cost, (iii) low yield, (iv) lower cost-effective ratio, (v) minimal selectivity, (vi) low activity, and (vii) stability, etc. In this context, there is an urgent need for new and robust extraction strategies. The synergies of modern extraction techniques with efficient and novel pretreatment approaches, such as the integration of enzymes, accompanied by conventional extraction processes, should be the utmost goal of current research and development studies. The typical effectivity of the extraction techniques mostly relies on these points, i.e., (i) know-how about the source nature and type, (ii) understanding the structural and compositional profile, (iii) influence of the processing factors, (iv) interplay between the extraction conditions and the end-product, (v) understanding the available functional entities, (vi) reaction chemistry of the extract bioactive compounds, and (vii) effective exploitation of the end-product in the marketplace. Marine biome, among numerous naturally occurring sources, has been appeared an immense essence of excellence to isolate an array of biologically active constituents with medicinal values and related point-of-care applications. Herein, we reviewed the salient information covering various therapeutic potential and biomedical perspectives. Following a brief introduction and marine pharmacognosy, an array of high-value biomolecules of marine origin are discussed with suitable examples. From the robust extraction strategies viewpoint, a part of the review focuses on three techniques, i.e., (1) enzyme-assisted extraction (EAE), (2) supercritical-fluid extraction (SFE), and (3) microwave-assisted extraction (MAE). Each technique is further enriched with processing and workflow environment. The later part of the review is mainly focused on the therapeutic and biomedical perspectives of under-reviewed bio-active compounds or biomolecules. The previous and latest research on the anticancer, skin curative, cardio-protective, immunomodulatory and UV-protectant potentialities of marine-derived biologically active entities have been summarized with suitable examples and related pathways illustrations. Finally, the work is wrapped-up with current research challenges, future aspects, and concluding remarks.


Subject(s)
Biological Products/pharmacology , Macromolecular Substances/pharmacology , Animals , Aquatic Organisms/chemistry , Biological Products/chemistry , Biological Products/isolation & purification , Biological Products/therapeutic use , Biomedical Research , Chemical Fractionation , Drug Discovery , Ecosystem , Humans , Macromolecular Substances/chemistry , Macromolecular Substances/isolation & purification , Macromolecular Substances/therapeutic use , Structure-Activity Relationship
13.
Anal Chem ; 92(6): 4527-4534, 2020 03 17.
Article in English | MEDLINE | ID: mdl-32075366

ABSTRACT

In this study a new method for evaluating the pressure effect on separations of oligonucleotides and proteins on an anion exchange column was developed. The pressure rise of up to 500 bar was attained by coupling restriction capillaries to the column outlet to minimize differences in pressure over the column. Using pH transient measurements it was demonstrated that no shift in ion exchange equilibria occurs due to a pressure increase. Results from isocratic and gradient separations of oligonucleotides (model compounds) were evaluated by stoichiometric displacement and linear gradient elution model, respectively. Both elution modes demonstrated that for smaller oligonucleotides the number of binding sites remained unchanged with pressure rise while an increase for large oligonucleotides was observed, indicating their alignment over the stationary phase. From the obtained model parameters and their pressure dependencies, a thermodynamic description was made and compared between the elution modes. A complementary pattern of a linear increase of partial molar volume change with a pressure rise was established. Furthermore, estimation of the pressure effect was performed for bovine serum albumin and thyroglobulin that required gradient separations. Again, a raise in binding site number was found with pressure increase. The partial molar volume changes of BSA and Tg at the maximal investigated pressure and minimal salt concentration were -31.6 and -34.4 cm3/mol, respectively, indicating a higher rigidity of Tg. The proposed approach provides an insight into the molecule deformation over a surface at high pressures under nondenaturing conditions. The information enables a more comprehensive UHPLC method development.


Subject(s)
Oligonucleotides/isolation & purification , Serum Albumin, Bovine/isolation & purification , Thyroglobulin/isolation & purification , Adsorption , Animals , Cattle , Chromatography, Ion Exchange , Macromolecular Substances/chemistry , Macromolecular Substances/isolation & purification , Oligonucleotides/chemistry , Particle Size , Pressure , Serum Albumin, Bovine/chemistry , Surface Properties , Thermodynamics , Thyroglobulin/chemistry
14.
J Chromatogr A ; 1609: 460491, 2020 Jan 04.
Article in English | MEDLINE | ID: mdl-31481295

ABSTRACT

The development of multifarious stationary phases is still a growing demand so as to solve the tasks of ever evolving actual applications. Herein, with D-2-allylglycine hydrochloride (AG·HCl) as the hydrophilic monomer, diene ionic liquid 1-allyl-3-vinylimidazolium bromide (AVI·Br) and polyhedral oligomeric silsesquioxane methacryl substituted (POSS-MA) as the dual crosslinkers, the highly cross-linked imidazolium-bridged POSS-AVI-AG hybrid monolithic column was fabricated via the "one-pot" free radical copolymerization. The AG·HCl embedded POSS-AVI-AG column displays typical reversed-phase liquid chromatography/hydrophilic interaction liquid chromatography mixed-mode retention mechanisms. Both hydrophobic phenols, alkylbenzenes, aromatic amines and hydrophilic nucleosides/nucleic acid bases, amides and thioureas were successfully separated with high column efficiencies (up to 571,000 plates/m for amides), outperforming our previously reported AVI·Br modified POSS-AVI column. Moreover, the column was also explored for the separation of cytochrome c tryptic digests and egg white protein extraction. All these results demonstrate that the POSS-AVI-AG column has a good potential in separation of both small molecules and complex biological samples with multiple mechanisms.


Subject(s)
Allylglycine/chemistry , Imidazoles/chemistry , Macromolecular Substances/isolation & purification , Organosilicon Compounds/chemistry , Cytochromes c/isolation & purification , Nucleosides/isolation & purification , Peptides/isolation & purification , Polymerization , Proteins/isolation & purification
15.
Curr Opin Struct Biol ; 60: 17-26, 2020 02.
Article in English | MEDLINE | ID: mdl-31790873

ABSTRACT

Evidence accumulated over the past decade provides support for liquid-liquid phase separation as the mechanism underlying the formation of biomolecular condensates, which include not only 'membraneless' organelles such as nucleoli and RNA granules, but additional assemblies involved in transcription, translation and signaling. Understanding the molecular mechanisms of condensate function requires knowledge of the structures of their constituents. Current knowledge suggests that structures formed via multivalent domain-motif interactions remain largely unchanged within condensates. Two different viewpoints exist regarding structures of disordered low-complexity domains within condensates; one argues that low-complexity domains remain largely disordered in condensates and their multivalency is encoded in short motifs called 'stickers', while the other argues that the sequences form cross-ß structures resembling amyloid fibrils. We review these viewpoints and highlight outstanding questions that will inform structure-function relationships for biomolecular condensates.


Subject(s)
Macromolecular Substances/chemistry , Animals , Humans , Macromolecular Substances/isolation & purification , Macromolecular Substances/metabolism
16.
J Mater Chem B ; 8(4): 715-726, 2020 01 28.
Article in English | MEDLINE | ID: mdl-31868869

ABSTRACT

Self-assembled supramolecular gels as a soft material have received extensive attention due to their excellent physicochemical properties such as variability, multiple responsiveness and appropriate viscoelasticity. At present, many self-assembled gels with physicochemical functions are constructed as drug delivery systems and used for the treatment of diseases. However, self-assembled gel drug delivery systems having pharmacological functions remain almost unexplored. Here, we present an anti-inflammatory pharmacologically active gel drug delivery system consisting of direct self-assembled small molecule naturally-occurring compounds (self-assembled small molecule natural products, SSNPs) derived from traditional Chinese medicine. The system not only exhibits excellent thixotropy, good topical safety and sustained release, but also achieves superior inflammatory therapeutic effects both in vivo and in vitro. Compared to non-pharmacologically active drug delivery systems, this system can increase the in vivo anti-inflammatory activity of drugs by nearly two-thirds. More importantly, its therapeutic effect even reached 141.54% of OTC drugs. The successful construction of an anti-inflammatory pharmacologically active gel drug delivery system not only makes full use of the self-assembly properties and biological activity of natural products, but also provides an important reference for the development of pharmacologically active drug delivery systems using SSNPs in the future.


Subject(s)
Anti-Inflammatory Agents/therapeutic use , Biological Products/therapeutic use , Drug Delivery Systems , Edema/drug therapy , Animals , Anti-Inflammatory Agents/chemistry , Anti-Inflammatory Agents/isolation & purification , Biological Products/chemistry , Biological Products/isolation & purification , Edema/chemically induced , Gels/chemistry , Gels/isolation & purification , Gels/therapeutic use , Liquidambar/chemistry , Macromolecular Substances/chemistry , Macromolecular Substances/isolation & purification , Macromolecular Substances/therapeutic use , Materials Testing , Medicine, Chinese Traditional , Mice , Mice, Inbred Strains , Molecular Conformation , RAW 264.7 Cells , Xylenes
17.
J Microbiol Biotechnol ; 29(9): 1361-1368, 2019 Sep 28.
Article in English | MEDLINE | ID: mdl-31434170

ABSTRACT

Codium fragile is an edible seaweed in Asian countries that has been used as a thrombolytic, anticoagulant, antioxidant, anti-inflammatory, and immune-stimulatory agent. Ginseng has also been known to maintain immune homeostasis and to regulate the immune system via enhancing resistance to diseases and microorganisms. In this study, anionic macromolecules extracted from C. fragile (CFAM) were orally administered with red ginseng extract (100 mg/kg body weight) to cyclophosphamide-induced immunosuppressed male BALB/c mice to investigate the immune-enhancing cooperative effect of Codium fragile and red ginseng. Our results showed that supplementing CFAM with red ginseng extract significantly increased spleen index, T- and B-cell proliferation, NK cell activity, and splenic lymphocyte immuneassociated gene expression compared to those with red ginseng alone, even though a high concentration of CFAM with red ginseng decreased immune biomarkers. These results suggest that CFAM can be used as a co-stimulant to enhance health and immunity in immunosuppressed conditions.


Subject(s)
Adjuvants, Immunologic/pharmacology , Chlorophyta/chemistry , Macromolecular Substances/pharmacology , Panax/chemistry , Plant Extracts/pharmacology , Adjuvants, Immunologic/chemistry , Animals , Anions/isolation & purification , Anions/pharmacology , Cyclophosphamide/toxicity , Drug Therapy, Combination , Immunosuppression Therapy , Lymphocyte Activation/drug effects , Lymphocyte Activation/genetics , Lymphocytes/cytology , Lymphocytes/immunology , Macromolecular Substances/isolation & purification , Male , Mice, Inbred BALB C , Plant Extracts/administration & dosage , Plant Extracts/chemistry , Spleen/immunology
18.
Annu Rev Biomed Eng ; 21: 395-415, 2019 06 04.
Article in English | MEDLINE | ID: mdl-30892930

ABSTRACT

In recent years, cryo electron microscopy (cryo-EM) technology has been transformed with the development of better instrumentation, direct electron detectors, improved methods for specimen preparation, and improved software for data analysis. Analyses using single-particle cryo-EM methods have enabled determination of structures of proteins with sizes smaller than 100 kDa and resolutions of ∼2 Šin some cases. The use of electron tomography combined with subvolume averaging is beginning to allow the visualization of macromolecular complexes in their native environment in unprecedented detail. As a result of these advances, solutions to many intractable challenges in structural and cell biology, such as analysis of highly dynamic soluble and membrane-embedded protein complexes or partially ordered protein aggregates, are now within reach. Recent reports of structural studies of G protein-coupled receptors, spliceosomes, and fibrillar specimens illustrate the progress that has been made using cryo-EM methods, and are the main focus of this review.


Subject(s)
Cryoelectron Microscopy/trends , Macromolecular Substances/chemistry , Macromolecular Substances/ultrastructure , Animals , Biomedical Engineering , Electron Microscope Tomography/trends , Electron Transport Chain Complex Proteins/chemistry , Electron Transport Chain Complex Proteins/ultrastructure , Humans , Imaging, Three-Dimensional , Ion Channels/chemistry , Ion Channels/ultrastructure , Macromolecular Substances/isolation & purification , Membrane Transport Proteins/chemistry , Membrane Transport Proteins/ultrastructure , Models, Molecular , Spliceosomes/chemistry , Spliceosomes/ultrastructure
19.
Sci Rep ; 9(1): 4997, 2019 03 21.
Article in English | MEDLINE | ID: mdl-30899032

ABSTRACT

Single-molecule stretching experiments on DNA, RNA, and other biological macromolecules opened up the possibility of an impressive progress in many fields of life and medical sciences. The reliability of such experiments may be crucially limited by the possibility of determining the influence of the apparatus on the experimental outputs. Here we deduce a model that let us analytically evaluate such influence, fundamental for the interpretation of Single Molecule Force Spectroscopy experiments and intermolecular interactions phenomena. As we show, our model is coherent with previous numerical results and quantitively reproduce AFM experimental tests on titin macromolecules and P-selectin with variable probe stiffnesses.


Subject(s)
Macromolecular Substances/isolation & purification , Mechanical Phenomena , Nanotechnology , Single Molecule Imaging/methods , Connectin/genetics , Connectin/isolation & purification , DNA/genetics , DNA/isolation & purification , Humans , Macromolecular Substances/chemistry , Microscopy, Atomic Force , Protein Folding , RNA/genetics , RNA/isolation & purification , Thermodynamics
20.
J Chromatogr A ; 1597: 89-99, 2019 Jul 19.
Article in English | MEDLINE | ID: mdl-30926255

ABSTRACT

Shorter analysis times and greater resolving power are contributing factors for transfer of separation methods from an HPLC to a UHPLC system when performing analysis in biopharmaceutical or clinical research. The effect of pressure on separations in reversed phase chromatography is well described, however such investigations on ion exchange columns were previously not conducted. In this study we describe the effect of pressure on retention properties of proteins, oligonucleotides and plasmid DNA in ion exchange chromatography. Different column inlet pressures were obtained by coupling restriction capillaries with column outlet and performing separations at a constant temperature and mobile phase flow rate. Macromolecules were separated in isocratic mode as well as with various linear gradients of salt concentration at a constant pH value. The measured retention time increase was up to 80% for isocratic and 20% for gradient separations for a 500 bar increase in pressure. The effect of pressure was validated on a separate instrument after few months from initial experiments. The influence of pressure on retention properties seems to be dependent on the size, shape and flexibility of the macromolecule and causes different retention shifts when separating a sample with diverse analytes. Such changes in retention time can sometimes exceed the criteria set by European Pharmacopoeia (Ph. Eur.) for the allowable method adjustment and are thus considered to be a result of a different separation method. Therefore, the pressure effect that follows method transfer from HPLC to UHPLC conditions should not be neglected even for gradient separations in ion exchange chromatography, as the resulting retention change may cause revalidation of the separation method.


Subject(s)
Chromatography, Ion Exchange , Macromolecular Substances/isolation & purification , Pressure , Proteins/isolation & purification , Chromatography, High Pressure Liquid , Macromolecular Substances/chemistry , Oligonucleotides/chemistry , Oligonucleotides/isolation & purification , Proteins/chemistry
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