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1.
J Appl Microbiol ; 135(1)2024 Jan 02.
Article in English | MEDLINE | ID: mdl-38111211

ABSTRACT

AIM: This study aimed to understand the morphological effects of (in)organic additives on microbially induced calcium carbonate precipitation (MICP). METHODS AND RESULTS: MICP was monitored in real time in the presence of (in)organic additives: bovine serum albumin (BSA), biofilm surface layer protein A (BslA), magnesium chloride (MgCl2), and poly-l-lysine. This monitoring was carried out using confocal microscopy to observe the formation of CaCO3 from the point of nucleation, in comparison to conditions without additives. Complementary methodologies, namely scanning electron microscopy, energy-dispersive X-ray spectroscopy and X-ray diffraction, were employed to assess the visual morphology, elemental composition, and crystalline structures of CaCO3, respectively, following the crystals' formation. The results demonstrated that in the presence of additives, more CaCO3 crystals were produced at 100 min compared to the reaction without additives. The inclusion of BslA resulted in larger crystals than reactions containing other additives, including MgCl2. BSA induced a significant number of crystals from the early stages of the reaction (20 min) but did not have a substantial impact on crystal size compared to conditions without additives. All additives led to a higher content of calcite compared to vaterite after a 24-h reaction, with the exception of MgCl2, which produced a substantial quantity of magnesium calcite. CONCLUSIONS: The work demonstrates the effect of several (in)organic additives on MICP and sets the stage for further research to understand additive effects on MICP to achieve controlled CaCO3 precipitation.


Subject(s)
Calcium Carbonate , Sporosarcina , Calcium Carbonate/metabolism , Magnesium Chloride/metabolism , Sporosarcina/metabolism , Chemical Precipitation , Microscopy, Electron, Scanning
2.
Eur J Pharmacol ; 949: 175731, 2023 Jun 15.
Article in English | MEDLINE | ID: mdl-37075855

ABSTRACT

The present investigation was carried out to explore the role of roflumilast, a PDE4 inhibitor, as a potential treatment option for chronic kidney disease. Forty-six male Wistar rats were divided into five groups: Control, Disease control (50 mg/kg Adenine p.o.), Adenine + Roflumilast (0.5, 1 and 1.5 mg/kg, p.o.). Various urinary and serum biomarkers, antioxidant status, histopathology, and protein expression of inflammatory markers were measured to investigate the effects of roflumilast on kidney functions. Adenine was found to elevate the levels of serum creatinine, urea, uric acid, sodium, potassium, chloride, magnesium, and phosphorus and reduce the level of serum calcium. Further, adenine significantly increased the serum TGF-ß levels and reduced the anti-oxidant indices. Significant elevation was observed in protein expression of IL-1ß, TNF-α, MCP-1, ICAM-1, and Fibronectin. Histopathologically, adenine caused thickening of the glomerular basement membrane, inflammatory cells infiltration, atrophy, and glomeruli deterioration. However, Roflumilast administration (1 mg/kg) remarkably decrease serum creatinine, urea, uric acid, sodium, potassium, chloride, magnesium, phosphorus by 61%, 40%, 44%, 41%, 49%, 58%, 59% and 42% respectively, and increase in calcium by 158%. Moreover, Roflumilast (1 mg/kg) significantly reduced serum TGF-ß levels by 50% and elevated anti-oxidant indices by 257%, 112%, and 60%, respectively. The protein expression was significantly reduced by 5.5-fold, 7-fold, 5.7-fold, 6.2-fold, and 5.1-fold individually. Roflumilast noticeably improved the structure of glomeruli, tubules, and cellular functioning. The study confirmed that Roflumilast has the potential to ameliorate renal injury by reducing and regulating inflammatory responses.


Subject(s)
Antioxidants , Renal Insufficiency, Chronic , Rats , Animals , Male , Rats, Wistar , Antioxidants/adverse effects , Uric Acid/metabolism , Adenine/pharmacology , Calcium/metabolism , Creatinine , Magnesium Chloride/adverse effects , Magnesium Chloride/metabolism , Renal Insufficiency, Chronic/pathology , Kidney , Transforming Growth Factor beta/metabolism , Biomarkers/metabolism , Urea/pharmacology
3.
Biochim Biophys Acta Biomembr ; 1864(5): 183883, 2022 05 01.
Article in English | MEDLINE | ID: mdl-35181295

ABSTRACT

Cells are dynamic systems with complex mechanical properties, regulated by the presence of different species of proteins capable to assemble (and disassemble) into filamentous forms as required by different cells functions. Giant unilamellar vesicles (GUVs) of DMPC (1,2-dimyristoyl-sn-glycero-3-phosphocholine) are systems frequently used as a simplified model of cells because they offer the possibility of assaying separately different stimuli, which is no possible in living cells. Here we present a study of the effect of acting protein on mechanical properties of GUVs, when the protein is inside the vesicles in either monomeric G-actin or filamentous F-actin. For this, rabbit skeletal muscle G-actin is introduced inside GUVs by the electroformation method. Protein polymerization inside the GUVs is promoted by adding to the solution MgCl2 and the ion carrier A23187 to allow the transport of Mg+2 ions into the GUVs. To determine how the presence of actin changes the mechanical properties of GUVs, the vesicles are deformed by the application of an AC electric field in both cases with G-actin and with polymerized F-actin. The changes in shape of the vesicles are characterized by optical microscopy and from them the bending stiffness of the membrane are determined. It is found that G-actin has no appreciable effect on the bending stiffness of DMPC GUVs, but the polymerized actin makes the vesicles more rigid and therefore more resistant to deformations. This result is supported by evidence that actin filaments tend to accumulate near the membrane.


Subject(s)
Actins/chemistry , Dimyristoylphosphatidylcholine/chemistry , Electricity , Unilamellar Liposomes/chemistry , Actin Cytoskeleton/chemistry , Actins/metabolism , Animals , Calcimycin/chemistry , Magnesium Chloride/chemistry , Magnesium Chloride/metabolism , Microscopy , Muscle, Skeletal/metabolism , Rabbits , Surface Tension , Unilamellar Liposomes/metabolism , Viscosity
4.
J Microbiol Methods ; 192: 106364, 2022 01.
Article in English | MEDLINE | ID: mdl-34774876

ABSTRACT

Resuscitation and detection of stressed total coliforms in chlorinated water samples is needed to assess and prevent health effects from adverse exposure. In this study, we report that the addition of a growth enhancer mix consisting of trehalose, sodium pyruvate, magnesium chloride, and 1× trace mineral supplement improved growth of microorganisms from chlorinated secondary effluent in the base medium with Colilert-18. Improving growth of chlorine stressed microorganisms from secondary effluent is crucial to decreased detection time from 18 to 8 h.


Subject(s)
Bacterial Load/methods , Chlorine/toxicity , Culture Media/chemistry , Environmental Monitoring/methods , Escherichia coli/growth & development , Sewage/microbiology , Fluoridation , Magnesium Chloride/metabolism , Pyruvates/metabolism , Trehalose/metabolism , Water Microbiology
5.
Open Vet J ; 12(6): 1000-1017, 2022.
Article in English | MEDLINE | ID: mdl-36650881

ABSTRACT

Background: Water pollution has become a major threat to the environment and the living so an eco-friendly bio-filter was chosen for its merits over conventional techniques. Aim: Investigating the purifying activities of the Tilapia bone powder against inorganics, heavy metals, and microbial water pollutants and its impacts on performance, biochemical and antioxidant levels, cortisol and immunoglobulin concentrations, and intestinal microbiota in challenged broiler chickens. Methods: The in-vitro activity of Tilapia bone powder was evaluated against magnesium chloride and lead nitrate using tube minimal inhibitory concentration (MIC), as well as against Escherichia coli O1527:H7, Salmonella Typhimurium, Mycoplasma gallisepticum, Aspergillus niger, Trichophyton mentagrophytes, and Candida albicans using a 96-micro-well MIC. A total of 250 1-day-old Hubbard chicks were divided into five groups on a deep litter system. Chicks were supplemented daily with Tilapia bone powder (1 g/l) for 4-6 hours from the 3rd day. Challenges were served on the 7th, 14th, 21st, 28th, and 35th days for four broiler groups using magnesium chloride (100 mg/l), lead nitrate (350 mg/l), E. coli (2.4 × 1012 CFU/ml), S. Typhimurium (1.8 × 108 CFU/ml), respectively, and the 5th group was assigned as a control. A total of 2,250 samples (90 Tilapia-pollutants mixes, 480 Tilapia-microbial mixes, 240 sera, 240 intestinal swabs, and 1,200 tissue samples) were collected. Results: Tilapia bone powder 1% reveals a 100% reduction in the lead after 1 hour, total and calcium hardness after 0.5 hours, as well as 100% killing efficacy against E. coli O1527:H7, S. Typhimurium, M. gallisepticum, A. niger, T. mentagrophytes, and C. albicans after 0.5, 1, 1, 1, 1, and 1 hour, respectively. Tilapia bone powder 1% treated water reveals highly significant (p < 0.01) increases in dissolved oxygen and declines in physicochemical and microbial parameters compared with tap water. Challenged treated broilers revealed highly significant (p < 0.01) increases in weight gains, performance index, body weights, carcasses, and organs weights, immunoglobulin concentrations, and antioxidant levels, as well as highly significant (p < 0.01) improvements in feed conversions, feed and water intakes, biochemical profile, cortisol hormone, and intestinal microbiota. Conclusion: Tilapia bone powder provided significant in-vitro adsorptive and antimicrobial actions, as well as supported the broiler chickens to mitigate the polluted water stress accompanied by enhanced performance, carcass quality, immunity, and intestinal microbiota.


Subject(s)
Cichlids , Water Purification , Animals , Chickens , Antioxidants/metabolism , Escherichia coli/metabolism , Cichlids/metabolism , Magnesium Chloride/metabolism , Powders , Hydrocortisone , Immunoglobulins/metabolism
6.
Nucleic Acids Res ; 49(19): 10835-10850, 2021 11 08.
Article in English | MEDLINE | ID: mdl-34614184

ABSTRACT

Liposomes are widely used as synthetic analogues of cell membranes and for drug delivery. Lipid-binding DNA nanostructures can modify the shape, porosity and reactivity of liposomes, mediated by cholesterol modifications. DNA nanostructures can also be designed to switch conformations by DNA strand displacement. However, the optimal conditions to facilitate stable, high-yield DNA-lipid binding while allowing controlled switching by strand displacement are not known. Here, we characterized the effect of cholesterol arrangement, DNA structure, buffer and lipid composition on DNA-lipid binding and strand displacement. We observed that binding was inhibited below pH 4, and above 200 mM NaCl or 40 mM MgCl2, was independent of lipid type, and increased with membrane cholesterol content. For simple motifs, binding yield was slightly higher for double-stranded DNA than single-stranded DNA. For larger DNA origami tiles, four to eight cholesterol modifications were optimal, while edge positions and longer spacers increased yield of lipid binding. Strand displacement achieved controlled removal of DNA tiles from membranes, but was inhibited by overhang domains, which are used to prevent cholesterol aggregation. These findings provide design guidelines for integrating strand displacement switching with lipid-binding DNA nanostructures. This paves the way for achieving dynamic control of membrane morphology, enabling broader applications in nanomedicine and biophysics.


Subject(s)
DNA, Single-Stranded/metabolism , DNA/metabolism , Liposomes/metabolism , Phosphatidylcholines/metabolism , Phosphatidylethanolamines/metabolism , Cholesterol/chemistry , Cholesterol/metabolism , DNA/chemistry , DNA, Single-Stranded/chemistry , Hydrogen-Ion Concentration , Kinetics , Liposomes/chemistry , Magnesium Chloride/chemistry , Magnesium Chloride/metabolism , Nanostructures/chemistry , Nanostructures/ultrastructure , Nucleic Acid Conformation , Phosphatidylcholines/chemistry , Phosphatidylethanolamines/chemistry , Sodium Chloride/chemistry , Sodium Chloride/metabolism , Solutions , Thermodynamics
7.
Sci Rep ; 11(1): 10527, 2021 05 18.
Article in English | MEDLINE | ID: mdl-34006911

ABSTRACT

Kokumi taste is a well-accepted and characterised taste modality and is described as a sensation of enhancement of sweet, salty, and umami tastes. The Calcium Sensing Receptor (CaSR) has been designated as the putative kokumi taste receptor for humans, and a number of kokumi-active ligands of CaSR have been discovered recently with activity confirmed both in vivo and in vitro. Domestic cats (Felis catus) are obligate carnivores and accordingly, their diet is abundant in proteins, peptides, and amino acids. We hypothesised that CaSR is a key taste receptor for carnivores, due to its role in the detection of different peptides and amino acids in other species. Using in silico, in vitro and in vivo approaches, here we compare human CaSR to that of a model carnivore, the domestic cat. We found broad similarities in ligand specificity, but differences in taste sensitivity between the two species. Indeed our in vivo data shows that cats are sensitive to CaCl2 as a kokumi compound, but don't show this same activity with Glutathione, whereas for humans the reverse is true. Collectively, our data suggest that kokumi is an important taste modality for carnivores that drives the palatability of meat-derived compounds such as amino acids and peptides, and that there are differences in the perception of kokumi taste between carnivores and omnivores.


Subject(s)
Cats/physiology , Taste Perception , Amino Acid Sequence , Amino Acids/analysis , Animals , Calcium Chloride/metabolism , Glutathione/metabolism , Humans , Ligands , Magnesium Chloride/metabolism , Meat Products/analysis , Peptides/analysis , Protein Binding , Receptors, Calcium-Sensing/metabolism , Taste Buds/metabolism
8.
Int J Mol Sci ; 22(5)2021 Feb 26.
Article in English | MEDLINE | ID: mdl-33652657

ABSTRACT

Formation of stable actin filaments, critically important for actin functions, is determined by the ionic strength of the solution. However, not much is known about the elements of the actin fold involved in ionic-strength-dependent filament stabilization. In this work, F-actin was destabilized by Cu2+ binding to Cys374, and the effects of solvent conditions on the dynamic properties of F-actin were correlated with the involvement of Segment 227-235 in filament stabilization. The results of our work show that the presence of Mg2+ at the high-affinity cation binding site of Cu-modified actin polymerized with MgCl2 strongly enhances the rate of filament subunit exchange and promotes the filament instability. In the presence of 0.1 M KCl, the filament subunit exchange was 2-3-fold lower than that in the MgCl2-polymerized F-actin. This effect correlates with the reduced accessibility of the D-loop and Segment 227-235 on opposite filament strands, consistent with an ionic-strength-dependent conformational change that modulates involvement of Segment 227-235 in stabilization of the intermonomer interface. KCl may restrict the mobility of the α-helix encompassing part of Segment 227-235 and/or be bound to Asp236 at the boundary of Segment 227-235. These results provide experimental evidence for the involvement of Segment 227-235 in salt-induced stabilization of contacts within the actin filament and suggest that they can be weakened by mutations characteristic of actin-associated myopathies.


Subject(s)
Actin Cytoskeleton/chemistry , Actins/chemistry , Copper/chemistry , Magnesium Chloride/chemistry , Muscular Diseases , Actin Cytoskeleton/metabolism , Actins/metabolism , Animals , Copper/metabolism , Magnesium Chloride/metabolism , Rabbits
9.
Plant J ; 105(6): 1449-1458, 2021 03.
Article in English | MEDLINE | ID: mdl-33280178

ABSTRACT

The tricarboxylic acid (TCA) cycle is one of the most important metabolic pathways in nature. Oxygenic photoautotrophic bacteria, cyanobacteria, have an unusual TCA cycle. The TCA cycle in cyanobacteria contains two unique enzymes that are not part of the TCA cycle in other organisms. In recent years, sustainable metabolite production from carbon dioxide using cyanobacteria has been looked at as a means to reduce the environmental burden of this gas. Among cyanobacteria, the unicellular cyanobacterium Synechocystis sp. PCC 6803 (Synechocystis 6803) is an optimal host for sustainable metabolite production. Recently, metabolite production using the TCA cycle in Synechocystis 6803 has been carried out. Previous studies revealed that the branch point of the oxidative and reductive TCA cycles, oxaloacetate metabolism, plays a key role in metabolite production. However, the biochemical mechanisms regulating oxaloacetate metabolism in Synechocystis 6803 are poorly understood. Concentrations of oxaloacetate in Synechocystis 6803 are extremely low, such that in vivo analysis of oxaloacetate metabolism does not seem realistic. Therefore, using purified enzymes, we reconstituted oxaloacetate metabolism in Synechocystis 6803 in vitro to reveal the regulatory mechanisms involved. Reconstitution of oxaloacetate metabolism revealed that pH, Mg2+ and phosphoenolpyruvate are important factors affecting the conversion of oxaloacetate in the TCA cycle. Biochemical analyses of the enzymes involved in oxaloacetate metabolism in this and previous studies revealed the biochemical mechanisms underlying the effects of these factors on oxaloacetate conversion. In addition, we clarified the function of two l-malate dehydrogenase isozymes in oxaloacetate metabolism. These findings serve as a basis for various applications of the cyanobacterial TCA cycle.


Subject(s)
Citric Acid Cycle , Oxaloacetic Acid/metabolism , Synechocystis/metabolism , Fumarates/metabolism , Hydrogen-Ion Concentration , Magnesium Chloride/metabolism , Malate Dehydrogenase/metabolism , Phosphoenolpyruvate/metabolism , Temperature
10.
J Immunol Methods ; 487: 112875, 2020 12.
Article in English | MEDLINE | ID: mdl-33031794

ABSTRACT

The expression of Kv1.3 and KCa channels in human T cells is essential for maintaining cell activation, proliferation and migration during an inflammatory response. Recently, an additional residual current, sensitive to anandamide and A293, compounds specifically inhibiting currents mediated by TASK channels, was observed after complete pharmacological blockade of Kv1.3 and KCa channels. This finding was not consistently observed throughout different studies and, an in-depth review of the different recording conditions used for the electrophysiological analysis of K+ currents in T cells revealed fluoride as major anionic component of the pipette intracellular solutions in the initial studies. While fluoride is frequently used to stabilize electrophysiological recordings, it is known as G-protein activator and to influence the intracellular Ca2+ concentration, which are mechanisms known to modulate TASK channel functioning. Therefore, we systemically addressed different fluoride- and chloride-based pipette solutions in whole-cell patch-clamp experiments in human T cells and used specific blockers to identify membrane currents carried by TASK and Kv1.3 channels. We found that fluoride increased the decay time constant of K+ outward currents, reduced the degree of the sustained current component and diminished the effect of the specific TASK channels blocker A293. These findings indicate that the use of fluoride-based pipette solutions may hinder the identification of a functional TASK channel component in electrophysiological experiments.


Subject(s)
Fluorides/pharmacology , Membrane Potentials/drug effects , Potassium Channels, Tandem Pore Domain/metabolism , Potassium Compounds/pharmacology , T-Lymphocytes/drug effects , Cells, Cultured , Fluorides/metabolism , Humans , Kv1.3 Potassium Channel/drug effects , Kv1.3 Potassium Channel/metabolism , Magnesium Chloride/metabolism , Magnesium Chloride/pharmacology , Patch-Clamp Techniques , Potassium Channel Blockers/pharmacology , Potassium Channels, Tandem Pore Domain/drug effects , Potassium Compounds/metabolism , T-Lymphocytes/metabolism , Time Factors
11.
Food Res Int ; 121: 622-632, 2019 07.
Article in English | MEDLINE | ID: mdl-31108789

ABSTRACT

Much effort has been devoted to studying the production of Streptomyces transglutaminase (TGase). However, more exploration into the mechanism of TGase biosynthesis is necessary to enhance its production further. The effect of excessive metal stress on Streptomyces mobaraensis's TGase activity, growth rate, and mycelium differentiation were evaluated. To elucidate the regulatory mechanism of TGase production and cell differentiations, a proteomic analysis and qRT-PCR of S. mobaraensis was performed. This study showed that the TGase biosynthesis was enhanced while the cell growth was inhibited under MgCl2 stress at the earlier stage of incubation. Furthermore, MgCl2 stress resulted in early cell differentiation compared to the control group. The proteomic analysis indicated that both the nucleotide metabolism and primary metabolism were repressed at the onset of TGase production, explaining the observed decrease in cell growth rate. Several enriched enzymes in the nitrogen metabolic pathways confirmed that the metabolic fluxes for the syntheses of glycine and serine were increased. Furthermore, some stress or stress-related proteins were expressed at a low level in the strain cultivated in normal medium but were highly expressed at the onset of TGase production.


Subject(s)
Cell Differentiation , Proteome/metabolism , Streptomyces/metabolism , Stress, Physiological , Transglutaminases/biosynthesis , Bacterial Proteins/metabolism , Fermentation , Gene Expression Regulation, Bacterial , Magnesium Chloride/metabolism , Proteomics , RNA, Bacterial/genetics , RNA, Bacterial/isolation & purification , Tandem Mass Spectrometry
12.
Sci Total Environ ; 679: 279-287, 2019 Aug 20.
Article in English | MEDLINE | ID: mdl-31082601

ABSTRACT

Wastewaters generated in regions with water scarcity usually have high alkalinity, hardness, and elevated osmotic pressure (OP). Those characteristics should be considered when using biological systems for wastewater treatment along with the salinity heterogeneity. The interaction of different salts in mixed electrolyte solutions may cause inhibition, antagonism, synergism, and stimulation effects on microbial communities. Little is known about those effects on microbial activity and community structure of nitrifying and denitrifying bacteria. In this work, factorial design was used to evaluate the effects of NaCl, MgCl2 and CaCl2 on nitrifying and denitrifying communities. Antagonistic relationships between all salts were observed and they had greater magnitude on the nitrifying community. Stimulus and synernism were more evident on the nitrifying and denitrifying experiments, respectively. For this reason, the highest nitrification and denitrification specific rates were 1.1 × 10-1 mgN-NH4+ gSSV-1 min-1 for condition 01 and 6.5 × 10-2 mgN-NO3- gSSV-1 min-1 for control condition, respectively. The toxicity of the salts followed the order of NaCl > MgCl2 > CaCl2 and the antagonism between MgCl2 and NaCl was the most significant. PCR/DGGE analyses showed that Mg2+ may be the element that expresses the least influence in the differentiation of microbial structure even though it significantly affects the activity of the autotrophic microorganisms. The same behavior was observed for Ca2+ on denitrifying microorganism. In addition, microbial diversity and richness was not negatively affected by different salinities. Genetic sequencing suggested that the genus Aeromonas, Alishewanella, Azospirillum, Pseudoalteromonas, and Thioalkalivibrio were outstanding on ammonium and nitrate removal under saline conditions. The specific toxicity of each salt and the interactions among them are the major effects on microbial activity in biological wastewater treatments rather than the osmotic pressure caused by the final salinity.


Subject(s)
Bacteria/metabolism , Calcium Chloride/metabolism , Denitrification , Magnesium Chloride/metabolism , Nitrification , Sodium Chloride/metabolism , Cations/metabolism , Desert Climate , Microbiota , Wastewater/chemistry
13.
Sci Rep ; 9(1): 6038, 2019 04 15.
Article in English | MEDLINE | ID: mdl-30988396

ABSTRACT

Citrate synthase (CS, EC 2.3.3.1) catalyses the initial reaction of the tricarboxylic acid (TCA) cycle. Although CSs from heterotrophic bacteria have been extensively studied, cyanobacterial CSs are not well-understood. Cyanobacteria can produce various metabolites from carbon dioxide. Synechocystis sp. PCC 6803 (Synechocystis 6803) is a cyanobacterium used to synthesize metabolites through metabolic engineering techniques. The production of acetyl-CoA-derived metabolites in Synechocystis 6803 has been widely examined. However, the biochemical mechanisms of reactions involving acetyl-CoA in Synechocystis 6803 are poorly understood. We characterised the CS from Synechocystis 6803 (SyCS) and compared its characteristics with other bacterial CSs. SyCS catalysed only the generation of citrate, and did not catalyse the cleavage of citrate. It is suggested that SyCS is not related to the reductive TCA cycle. The substrate affinity and turnover number of SyCS were lower than those of CSs from heterotrophic bacteria. SyCS was activated by MgCl2 and CaCl2, which inhibit various bacterial CSs. SyCS was not inhibited by ATP and NADH; which are typical feedback inhibitors of other bacterial CSs. SyCS was inhibited by phosphoenolpyruvate and activated by ADP, which has not been reported for CSs from heterotrophic bacteria. Thus, SyCS showed unique characteristics, particularly its sensitivity to effectors.


Subject(s)
Bacterial Proteins/metabolism , Citrate (si)-Synthase/metabolism , Synechocystis/enzymology , Acetyl Coenzyme A/metabolism , Adenosine Triphosphate/metabolism , Calcium Chloride/metabolism , Carbon Dioxide/metabolism , Citric Acid/metabolism , Citric Acid Cycle , Enzyme Activation , Magnesium Chloride/metabolism , Synechocystis/metabolism
14.
Drug Metab Dispos ; 47(2): 124-134, 2019 02.
Article in English | MEDLINE | ID: mdl-30478159

ABSTRACT

UDP-glucuronosyltransferase (UGT)-mediated metabolism is possibly the most important conjugation reaction for marketed drugs. However, there are currently no generally accepted standard incubation conditions for UGT microsomal assays, and substantial differences in experimental design and methodology between laboratories hinder cross-study comparison of in vitro activities. This study aimed to define optimal experimental conditions to determine glucuronidation activity of multiple UGT isoforms simultaneously using human liver microsomes. Hepatic glucuronidation activities of UGT1A1, UGT1A3, UGT1A4, UGT1A6, UGT1A9, UGT2B4, UGT2B7, UGT2B10, UGT2B15, and UGT2B17 were determined using cocktail incubations of 10 UGT probe substrates. Buffer components and cosubstrates were assessed over a range of concentrations including magnesium chloride (MgCl2; 0-10 mM) and uridine 5'-diphosphoglucuronic acid (UDPGA; 1-25 mM) with either Tris-HCl or potassium phosphate buffer (100 mM, pH 7.4). Greater microsomal glucuronidation activity by different hepatic UGT isoforms was obtained using 10 mM MgCl2 and 5 mM UDPGA with 100 mM Tris-HCl buffer. The influence of bovine serum albumin (BSA; 0.1%-2% w/v) on glucuronidation activity was also assessed. Enzyme- and substrate-dependent effects of BSA were observed, resulting in decreased total activity of UGT1A1, UGT1A3, and UGT2B17 and increased total UGT1A9 and UGT2B7 activity. The inclusion of BSA did not significantly reduce the between-subject variability of UGT activity. Future in vitro UGT profiling studies under the proposed optimized experimental conditions would allow high-quality positive control data to be generated across laboratories, with effective control of a high degree of between-donor variability for UGT activity and for chemical optimization toward lower-clearance drug molecules in a pharmaceutical drug discovery setting.


Subject(s)
Enzyme Assays/methods , Glucuronosyltransferase/metabolism , High-Throughput Screening Assays/methods , Microsomes, Liver/metabolism , Adult , Aged , Chromatography, High Pressure Liquid/methods , Female , Glucuronides/metabolism , Humans , Isoenzymes/metabolism , Magnesium Chloride/metabolism , Male , Middle Aged , Serum Albumin, Bovine/metabolism , Substrate Specificity , Tandem Mass Spectrometry/methods , Uridine Diphosphate Glucuronic Acid/metabolism , Young Adult
15.
Nutrients ; 10(7)2018 Jul 17.
Article in English | MEDLINE | ID: mdl-30018220

ABSTRACT

Introduction: Magnesium is an essential mineral involved in a range of key biochemical pathways. Several magnesium supplements are present on the market and their degree of bioavailability differs depending on the form of magnesium salt used. Aquamin-Mg is a natural source of magnesium, containing 72 additional trace minerals derived from the clean waters off the Irish coast. However, the in vitro bioaccessibility and bioavailability of Aquamin-Mg in comparison with other supplement sources of magnesium has yet to be tested. Method: Aquamin-Mg, magnesium chloride (MgCl2) and magnesium oxide (MgO) were subjected to gastrointestinal digestion according to the harmonized INFOGEST in vitro digestion method and in vitro bioavailability tested using the Caco-2 cell model. Magnesium concentration was measured by atomic absorption spectrophotometry (AAS). Results: Magnesium recovery from both Aquamin-Mg and MgCl2 was greater than for MgO. Magnesium from all three sources was transported across the epithelial monolayer with Aquamin-Mg displaying a comparable profile to the more bioavailable MgCl2. Conclusions: Our data support that magnesium derived from a marine-derived multimineral product is bioavailable to a significantly greater degree than MgO and displays a similar profile to the more bioavailable MgCl2 and may offer additional health benefits given its multimineral profile.


Subject(s)
Dietary Supplements , Digestion , Enterocytes/metabolism , Intestinal Absorption , Magnesium/metabolism , Minerals/metabolism , Models, Biological , Caco-2 Cells , Cell Polarity , Humans , Ireland , Magnesium Chloride/metabolism , Magnesium Oxide/metabolism , Nutritive Value , Osmolar Concentration , Reproducibility of Results , Spectrophotometry, Atomic
16.
Biotechnol Bioeng ; 115(1): 192-205, 2018 Jan.
Article in English | MEDLINE | ID: mdl-28922469

ABSTRACT

Glycosylation of proteins is a key function of the biosynthetic-secretory pathway in the endoplasmic reticulum (ER) and Golgi apparatus. Glycosylated proteins play a crucial role in cell trafficking and signaling, cell-cell adhesion, blood-group antigenicity, and immune response. In addition, the glycosylation of proteins is an important parameter in the optimization of many glycoprotein-based drugs such as monoclonal antibodies. In vitro glycoengineering of proteins requires glycosyltransferases as well as expensive nucleotide sugars. Here, we present a designed pathway consisting of five enzymes, glucokinase (Glk), phosphomannomutase (ManB), mannose-1-phosphate-guanyltransferase (ManC), inorganic pyrophosphatase (PmPpA), and 1-domain polyphosphate kinase 2 (1D-Ppk2) expressed in E. coli for the cell-free production and regeneration of GDP-mannose from mannose and polyphosphate with catalytic amounts of GDP and ADP. It was shown that GDP-mannose is produced at various conditions, that is pH 7-8, temperature 25-35°C and co-factor concentrations of 5-20 mM MgCl2 . The maximum reaction rate of GDP-mannose achieved was 2.7 µM/min at 30°C and 10 mM MgCl2 producing 566 nmol GDP-mannose after a reaction time of 240 min. With respect to the initial GDP concentration (0.8 mM) this is equivalent to a yield of 71%. Additionally, the cascade was coupled to purified, transmembrane-deleted Alg1 (ALG1ΔTM), the first mannosyltransferase in the ER-associated lipid-linked oligosaccharide (LLO) assembly. Thereby, in a one-pot reaction, phytanyl-PP-(GlcNAc)2 -Man1 was produced with efficient nucleotide sugar regeneration for the first time. Phytanyl-PP-(GlcNAc)2 -Man1 can serve as a substrate for the synthesis of LLO for the cell-free in vitro glycosylation of proteins. A high-performance anion exchange chromatography method with UV and conductivity detection (HPAEC-UV/CD) assay was optimized and validated to determine the enzyme kinetics. The established kinetic model enabled the optimization of the GDP-mannose regenerating cascade and can further be used to study coupling of the GDP-mannose cascade with glycosyltransferases. Overall, the study envisages a first step towards the development of a platform for the cell-free production of LLOs as precursors for in vitro glycoengineering of proteins.


Subject(s)
Enzymes/metabolism , Escherichia coli/genetics , Guanosine Diphosphate Mannose/metabolism , Lipopolysaccharides/metabolism , Recombinant Proteins/metabolism , Coenzymes/metabolism , Enzymes/genetics , Enzymes/isolation & purification , Escherichia coli/metabolism , Gene Expression , Hydrogen-Ion Concentration , Magnesium Chloride/metabolism , Mannose/metabolism , Polyphosphates/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Temperature
17.
Sci Rep ; 7(1): 7839, 2017 08 10.
Article in English | MEDLINE | ID: mdl-28798480

ABSTRACT

Mesenchymal stem cells (MSC) are osteoblasts progenitors and a variety of studies suggest that they may play an important role for the health in the field of bone regeneration. Magnesium supplementation is gaining importance as adjuvant treatment to improve osteogenesis, although the mechanisms involving this process are not well understood. The objective of this study was to investigate the effects of magnesium on MSC differentiation. Here we show that in rat bone marrow MSC, magnesium chloride increases MSC proliferation in a dose-dependent manner promoting osteogenic differentiation and mineralization. These effects are reduced by 2-APB administration, an inhibitor of magnesium channel TRPM7. Of note, magnesium supplementation did not increase the canonical Wnt/ß-catenin pathway, although it promoted the activation of Notch1 signaling, which was also decreased by addition of 2-APB. Electron microscopy showed higher proliferation, organization and maturation of osteoblasts in bone decellularized scaffolds after magnesium addition. In summary, our results demonstrate that magnesium chloride enhances MSC proliferation by Notch1 signaling activation and induces osteogenic differentiation, shedding light on the understanding of the role of magnesium during bone regeneration.


Subject(s)
Cell Differentiation/drug effects , Magnesium Chloride/metabolism , Mesenchymal Stem Cells/drug effects , Mesenchymal Stem Cells/physiology , Osteogenesis/drug effects , Receptors, Notch/metabolism , Signal Transduction/drug effects , Animals , Bone and Bones/cytology , Boron Compounds/metabolism , Cell Proliferation/drug effects , Cells, Cultured , Enzyme Inhibitors/metabolism , Microscopy, Electron , Rats , TRPM Cation Channels/antagonists & inhibitors
18.
Protein J ; 36(2): 138-146, 2017 04.
Article in English | MEDLINE | ID: mdl-28299593

ABSTRACT

Many degenerative disorder such as Parkinsons, Alzheimers, Huntingtons disease, etc are caused due to the deposition of amyloid fibrils, formed due to the ordered aggregation of misfolded/unfolded proteins. Misfolded or unfolded proteins aggregate mostly through hydrophobic interactions which are unexposed in native state, but become exposed upon unfolding. To counteract amyloid related diseases, inhibition of the protein self assembly into fibril is a potential therapeutic strategy. The study aims at investigating the effect of selected compounds, namely trehalose and magnesium chloride hexahydrate towards inhibition and disaggregation of amyloid fibrils using Hen Egg White Lysozyme as a model. We further attempted to understand the mechanism of action with the help of various biophysical, microscopic as well as computational studies. A common mechanism of action was identified where the selected compounds exert their anti-amyloidogenic effects by altering HEWL conformations characterized by reduction in the beta sheet content and decrease in exposed hydrophobic surfaces. The altered conformation seems to have lesser amyloidogenic propensity leading to inhibition as well as disaggregation of amyloids.


Subject(s)
Amyloid/antagonists & inhibitors , Magnesium Chloride/pharmacology , Muramidase/chemistry , Trehalose/metabolism , Trehalose/pharmacology , Amyloid/chemistry , Amyloid/metabolism , Hydrophobic and Hydrophilic Interactions , Magnesium Chloride/chemistry , Magnesium Chloride/metabolism , Microscopy, Electron, Transmission , Models, Molecular , Molecular Docking Simulation , Muramidase/metabolism , Protein Conformation , Protein Folding , Protein Structure, Secondary , Trehalose/chemistry
19.
Int J Syst Evol Microbiol ; 67(1): 9-16, 2017 Jan.
Article in English | MEDLINE | ID: mdl-27902200

ABSTRACT

We isolated a Gram-stain-negative, pink-pigmented, motile, pleomorphic, extremely halophilic archaeon from the brine-seawater interface of Discovery Deep in the Saudi Arabian Red Sea. This strain, designated SB9T, was capable of growth within a wide range of temperatures and salinity, but required MgCl2. Cells lysed in distilled water, but at 7.0 % (w/v) NaCl cell lysis was prevented. The major polar lipids from strain SB9T were phosphatidylglycerol, phosphatidylglycerolphosphate methyl ester, sulfated mannosyl glucosyl diether, mannosyl glucosyl diether, an unidentified glycolipid and two unidentified phospholipids. The major respiratory quinones of strain SB9T were menaquinones MK8 (66 %) and MK8 (VIII-H2) (34 %). Analysis of the 16S rRNA gene sequence revealed that strain SB9T was closely related to species in the genera Halogranum and Haloplanus; in particular, it shared highest sequence similarity with the type strain of Halogranum rubrum (93.4 %), making it its closest known relative. The unfinished draft genome of strain SB9Twas 3 931 127 bp in size with a total G+C content of 62.53 mol% and contained 3917 ORFs, 50 tRNAs and eight rRNAs. Based on comparisons with currently available genomes, the highest average nucleotide identity value was 83 % to Halogranum salarium B-1T (GenBank accession no. GCA_000283335.1). These data indicate that this new isolate cannot be classified into any recognized genera of the family Haloferacaceae, and therefore strain SB9T is considered to be a representative of a novel species of a new genus within this family, for which the name Haloprofundus marisrubri gen. nov., sp. nov. is proposed. The type strain of Haloprofundus marisrubri is SB9T (=JCM 19565T=CGMCC 1.14959T).


Subject(s)
Halobacteriaceae/classification , Phylogeny , Salinity , Seawater/microbiology , Base Composition , DNA, Archaeal/genetics , Glycolipids/analysis , Halobacteriaceae/genetics , Halobacteriaceae/isolation & purification , Indian Ocean , Magnesium Chloride/metabolism , Phospholipids/analysis , RNA, Ribosomal, 16S/genetics , Salts/chemistry , Saudi Arabia , Sequence Analysis, DNA
20.
PLoS One ; 11(12): e0169116, 2016.
Article in English | MEDLINE | ID: mdl-28036382

ABSTRACT

The food- and airborne fungal genus Wallemia comprises seven xerophilic and halophilic species: W. sebi, W. mellicola, W. canadensis, W. tropicalis, W. muriae, W. hederae and W. ichthyophaga. All listed species are adapted to low water activity and can contaminate food preserved with high amounts of salt or sugar. In relation to food safety, the effect of high salt and sugar concentrations on the production of secondary metabolites by this toxigenic fungus was investigated. The secondary metabolite profiles of 30 strains of the listed species were examined using general growth media, known to support the production of secondary metabolites, supplemented with different concentrations of NaCl, glucose and MgCl2. In more than two hundred extracts approximately one hundred different compounds were detected using high-performance liquid chromatography-diode array detection (HPLC-DAD). Although the genome data analysis of W. mellicola (previously W. sebi sensu lato) and W. ichthyophaga revealed a low number of secondary metabolites clusters, a substantial number of secondary metabolites were detected at different conditions. Machine learning analysis of the obtained dataset showed that NaCl has higher influence on the production of secondary metabolites than other tested solutes. Mass spectrometric analysis of selected extracts revealed that NaCl in the medium affects the production of some compounds with substantial biological activities (wallimidione, walleminol, walleminone, UCA 1064-A and UCA 1064-B). In particular an increase in NaCl concentration from 5% to 15% in the growth media increased the production of the toxic metabolites wallimidione, walleminol and walleminone.


Subject(s)
Basidiomycota/genetics , Basidiomycota/metabolism , Extreme Environments , Mycotoxins/metabolism , Secondary Metabolism/genetics , Sodium Chloride/metabolism , Azasteroids/metabolism , Basidiomycota/classification , Cholestadienols/metabolism , Chromatography, High Pressure Liquid , Food Contamination , Food Microbiology , Glucose/metabolism , Magnesium Chloride/metabolism , Secondary Metabolism/physiology , Sesquiterpenes/metabolism
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