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1.
Methods Mol Biol ; 2275: 141-160, 2021.
Article in English | MEDLINE | ID: mdl-34118036

ABSTRACT

Resveratrol and quercetin are among the most studied plant polyphenols, and have many health-promoting actions. Strategies to accumulate them into mitochondria may be of therapeutic relevance, since these compounds are redox active and are well known to impact mitochondria and mitochondrial proteins. We report here the procedures to synthesize mitochondria-targeted resveratrol and quercetin derivatives; the synthetic strategies reported are however expected to be adaptable to other polyphenols with similar reactivity at the phenolic hydroxyls. Mitochondrial targeting can be achieved by conjugation with triphenylphosphonium , a lipophilic cation; this was linked via a butyl spacer forming an ether bond with one of the phenolic oxygens. The first step toward the synthesis of all mitochondriotropic derivatives described in this work is the production of a regiospecific -(4-O-chlorobutyl) derivative. Triphenylphosphonium (P+Ph3I-) is then introduced through two consecutive nucleophilic substitution steps: -Cl â†’ -I â†’ -P+Ph3I-. Pure mono-substituted chlorobutyl regioisomers are obtained by purification from the reaction mixture in the case of resveratrol , while specific protection strategies are required for quercetin to favor alkylation of one specific hydroxyl.Functionalization of the remaining hydroxyls can be exploited to modulate the physicochemical properties of the derivatives (i.e., water solubility, affinity for cell membranes); we report here synthetic protocols to obtain acetylated and methylated analogs.A brief description of some methods to assess the accumulation of the derivatives in mitochondria is also given; the proposed techniques are the use of a TPP +-selective electrode (with isolated rat liver mitochondria ) and fluorescence microscopy (with cultured cells).


Subject(s)
Mitochondria, Liver/chemistry , Polyphenols/chemical synthesis , Quercetin/analogs & derivatives , Resveratrol/analogs & derivatives , Animals , HCT116 Cells , Humans , Mitochondria, Liver/drug effects , Molecular Structure , Organophosphorus Compounds/chemistry , Polyphenols/chemistry , Polyphenols/pharmacology , Rats
2.
Methods Mol Biol ; 2275: 379-391, 2021.
Article in English | MEDLINE | ID: mdl-34118051

ABSTRACT

Untargeted lipidomics profiling by liquid chromatography -mass spectrometry (LC-MS) allows researchers to observe the occurrences of lipids in a biological sample without showing intentional bias to any specific class of lipids and allows retrospective reanalysis of data collected. Typically, and in the specific method described, a general extraction method followed by LC separation is used to achieve nonspecific class coverage of the lipidome prior to high resolution accurate mass (HRAM) MS detection . Here we describe a workflow including the isolation of mitochondria from liver tissue, followed by mitochondrial lipid extraction and the LC-MS conditions used for data acquisition. We also highlight how, in this method, all ion fragmentation can be used to identify species of lower abundances, often missed by data dependent fragmentation techniques. Here we describe the isolation of mitochondria from liver tissue, followed by mitochondrial lipid extraction and the LC-MS conditions used for data acquisition.


Subject(s)
Lipidomics/methods , Lysophosphatidylcholines/analysis , Mitochondria, Liver/chemistry , Animals , Chromatography, Liquid , Gene Knockout Techniques , Mice , Rats , Workflow , alpha-Synuclein/genetics
3.
Methods Mol Biol ; 2276: 41-55, 2021.
Article in English | MEDLINE | ID: mdl-34060031

ABSTRACT

Even in times, when the study of mitochondria in their natural cellular context is becoming more and more popular, some scientific questions still require the preparation of isolated mitochondria. Numerous protocols are available being adapted for different cell or tissue types allowing isolation of "pure" mitochondria trying to preserve their "structural and functional" integrity. In this chapter, we intend to provide a more general framework introducing differential isopycnic density gradient centrifugation strategy with a special focus sensitizing for the specific challenges coming along with this method and how to obtain "functional," enriched, "intact" mitochondria. Due to the fact that in any study dealing with these organelles standardized processing is mandatory, here we describe a strategy addressing quality control of prepared intact mitochondria. The quality control should be an integrated part of all isolation processes. The underlying protocol should be seen as starting point and has to be carefully adjusted to cover different sample types used for the diverse research questions.


Subject(s)
Cell Fractionation/methods , Centrifugation, Density Gradient/methods , Centrifugation, Isopycnic/methods , Microscopy, Electron/methods , Mitochondria/chemistry , Mitochondria/metabolism , Animals , Humans , Liver/ultrastructure , Mice , Mitochondria/ultrastructure , Mitochondria, Liver/chemistry , Quality Control
4.
Mol Nutr Food Res ; 65(1): e1900942, 2021 01.
Article in English | MEDLINE | ID: mdl-32574416

ABSTRACT

Non-Alcoholic fatty liver disease (NAFLD) is the most common form of liver disease and is characterized by fat accumulation in the liver. Hypercaloric diets generally increase hepatic fat accumulation, whereas hypocaloric diets decrease liver fat content. In addition, there is evidence to suggest that moderate amounts of unsaturated fatty acids seems to be protective for the development of a fatty liver, while consumption of saturated fatty acids (SFA) appears to predispose toward hepatic steatosis. Recent studies highlight a key role for mitochondrial dysfunction in the development and progression of NAFLD. It is proposed that changes in mitochondrial structure and function are key mechanisms by which SFA lead to the development and progression of NAFLD. In this review, it is described how SFA intake is associated with liver steatosis and decreases the efficiency of the respiratory transport chain. This results in the production of reactive oxygen species and damage to nearby structures, eventually leading to inflammation, apoptosis, and scarring of the liver. Furthermore, studies demonstrating that SFA intake affects the composition of mitochondrial membranes are presented, and this process accelerates the progression of NAFLD. It is likely that events are intertwined and reinforce each other, leading to a constant deterioration in health.


Subject(s)
Dietary Fats/adverse effects , Mitochondria, Liver/metabolism , Non-alcoholic Fatty Liver Disease/etiology , Adenosine Triphosphate/metabolism , Animals , Dietary Fats/pharmacokinetics , Endoplasmic Reticulum Stress , Fatty Acids/adverse effects , Fatty Acids/pharmacokinetics , Humans , Mitochondria, Liver/chemistry , Mitochondria, Liver/drug effects , Mitochondria, Liver/pathology , Non-alcoholic Fatty Liver Disease/pathology , Reactive Oxygen Species/metabolism
5.
Biochim Biophys Acta Biomembr ; 1862(11): 183442, 2020 11 01.
Article in English | MEDLINE | ID: mdl-32814117

ABSTRACT

In the present work, we investigated the interaction of flavonoids (quercetin, naringenin and catechin) with cellular and artificial membranes. The flavonoids considerably inhibited membrane lipid peroxidation in rat erythrocytes treated with tert-butyl hydroperoxide (700 µM), and the IC50 values for prevention of this process were equal to 9.7 ± 0.8 µM, 8.8 ± 0.7 µM, and 37.8 ± 4.4 µM in the case of quercetin, catechin and naringenin, respectively, and slightly decreased glutathione oxidation. In isolated rat liver mitochondria, quercetin, catechin and naringenin (10-50 µM) dose-dependently increased the sensitivity to Ca2+ ions - induced mitochondrial permeability transition. Using the probes TMA-DPH and DPH we showed that quercetin rather than catechin and naringenin strongly decreased the microfluidity of the 1,2-dimyristoyl-sn-glycero-3-phosphocholine liposomal membrane bilayer at different depths. On the contrary, using the probe Laurdan we observed that naringenin transfer the bilayer to a more ordered state, whereas quercetin dose-dependently decreased the order of lipid molecule packing and increased hydration in the region of polar head groups. The incorporation of the flavonoids, quercetin and naringenin and not catechin, into the liposomes induced an increase in the zeta potential of the membrane and enlarged the area of the bilayer as well as lowered the temperature and the enthalpy of the membrane phase transition. The effects of the flavonoids were connected with modification of membrane fluidity, packing, stability, electrokinetic properties, size and permeability, prevention of oxidative stress, which depended on the nature of the flavonoid molecule and the nature of the membrane.


Subject(s)
Erythrocytes/chemistry , Flavonoids/chemistry , Mitochondria, Liver/chemistry , Mitochondrial Membranes/chemistry , Animals , Erythrocytes/metabolism , Flavonoids/pharmacology , Liposomes , Mitochondria, Liver/metabolism , Mitochondrial Membranes/metabolism , Oxidation-Reduction , Permeability , Rats , tert-Butylhydroperoxide/chemistry , tert-Butylhydroperoxide/pharmacology
6.
Nanoscale ; 12(20): 11070-11078, 2020 May 28.
Article in English | MEDLINE | ID: mdl-32400834

ABSTRACT

Post-translational modifications (PTMs) of proteins are recognized as crucial components of cell signaling pathways through modulating folding, altering stability, changing interactions with ligands, and, therefore, serving multiple regulatory functions. PTMs occur as covalent modifications of the protein's amino acid side chains or the length and composition of their termini. Here we study the functional consequences of PTMs for α-synuclein (αSyn) interactions with the nanopore of the voltage-dependent anion channel (VDAC) of the outer mitochondrial membrane. PTMs were mimicked by a divalent Alexa Fluor 488 sidechain attached separately at two positions on the αSyn C-terminus. Using single-channel reconstitution into planar lipid membranes, we find that such modifications change interactions drastically in both efficiency of VDAC inhibition by αSyn and its translocation through the VDAC nanopore. Analysis of the on/off kinetics in terms of an interaction "quasipotential" allows the positions of the C-terminal modifications to be determined with an accuracy of about three residues. Moreover, our results uncover a previously unobserved mechanism by which cytosolic proteins control ß-barrel channels and thus a new regulatory function for PTMs.


Subject(s)
Mitochondria, Liver , Mitochondrial Membranes , Nanopores , Protein Processing, Post-Translational , alpha-Synuclein , Animals , Mitochondria, Liver/chemistry , Mitochondria, Liver/metabolism , Mitochondrial Membranes/chemistry , Mitochondrial Membranes/metabolism , Protein Transport , Rats , alpha-Synuclein/chemistry , alpha-Synuclein/metabolism
7.
PLoS One ; 14(2): e0212580, 2019.
Article in English | MEDLINE | ID: mdl-30785939

ABSTRACT

Seasonal weight loss (SWL) is a primary constraint for farmers in the Mediterranean and tropics. One cost-effective solution to SWL is utilizing breeds like the Damara sheep that have adapted to deal with nutritional stress. Previous studies concluded that one of the adaptation mechanisms of SWL is a specialized fatty acid metabolism. Accordingly, hepatic-mitochondrial proteomes were compared across two different breeds (24 sheep total, Merino, n = 12 and Damara, n = 12) and two different diets (restricted vs unrestricted diet, 6 per breed, per diet, 24 total). Mitochondrial-proteins were isolated and relatively quantified using Blue native PAGE / 2D-electrophoresis and then analyzed via mass spectrometry. The tool ReviGO summarized the proteomes' gene-ontology terms. A total of 50 proteins were identified with 7 changing significantly in abundance (ANOVA p-value<0.05). Specific abundance patterns of corticosteroid and inflammatory response-associated proteins such as annexin and glutamate dehydrogenase suggests that the Damara has an unusual inflammation response when subjected to SWL in addition to its unique metabolism. All significant proteins warrant further study; Annexin in particular shows promise as a potentially useful biomarker.


Subject(s)
Mitochondria, Liver/metabolism , Mitochondrial Proteins/metabolism , Sheep/physiology , Animals , Breeding , Mitochondria, Liver/chemistry , Mitochondrial Proteins/analysis , Proteome/analysis , Proteome/metabolism , Seasons , Weight Loss
8.
Biochim Biophys Acta Biomembr ; 1861(4): 729-737, 2019 04 01.
Article in English | MEDLINE | ID: mdl-30658058

ABSTRACT

Hepatitis B virus X protein (HBx) functions in a variety of cellular events during the HBV life cycle. In a previous study, we reported that the HBx protein is sufficient to induce mitochondrial membrane permeabilization; however, the exact mechanism of HBx-induced mitochondrial membrane permeabilization has been not proposed. In this study, we report that HBx specifically targets cardiolipin (CL) and induces membrane permeabilization depending on CL concentration in mitochondrial outer membrane-mimic artificial liposomes. Interestingly, HBx-induced membrane permeabilization was enhanced by liposomes containing phosphatidylethanolamine, which plays a crucial role in forming a negative curvature on the membrane. We also show that the 68-117 region of HBx, which interacts with mitochondria, is necessary for membrane permeabilization. We examined the size of the pores formed by HBx and found that HBx permeates fluorescent dyes depending on the hydrodynamic diameter with a pore size of approximately 10 nm. The results of this study suggest that CL is necessary for HBx-induced membrane permeabilization and provide important information that suggests a new strategy for anti-HBV therapy.


Subject(s)
Cardiolipins/chemistry , Hepatitis B virus/chemistry , Mitochondria, Liver/chemistry , Mitochondrial Membranes/chemistry , Trans-Activators/chemistry , Animals , Cardiolipins/metabolism , Hepatitis B virus/metabolism , Liposomes/chemistry , Mice , Mitochondria, Liver/metabolism , Mitochondrial Membranes/metabolism , Permeability , Trans-Activators/metabolism , Viral Regulatory and Accessory Proteins
9.
Biomed Res Int ; 2019: 5729263, 2019.
Article in English | MEDLINE | ID: mdl-31950043

ABSTRACT

In recent years, the incidence of diseases associated with hepatic injury has increased in prevalence. Targeting the mitochondria to protect liver function has gained momentum due to their central role in energy production, apoptotic cell death, oxidative stress, calcium homeostasis, and lipid metabolism. In this study, we employed a hepatic mitochondria-based centrifugal ultrafiltration/liquid chromatography/mass spectrometry method (CM-HMC) to identify hepatic mitochondria ligands from medicinal herbs (MHs) including Notopterygii Rhizoma et Radix (NRR) that possess hepatic-protective effects. A total of 4 newly identified mitochondrial ligands were successfully identified by CM-HMC. The mitochondria-regulating activities of 3 of the 4 hits were confirmed using isolated mitochondria. The hepatic-protective effects of one of these hits were validated in carbon tetrachloride-damaged human liver L02 cell models. We have thus identified new natural hepatic-protectants that enhance our understanding of the hepatic-protective mechanisms of MHs. CM-HMC was proven to efficiently screen for mitochondrial ligands from MHs.


Subject(s)
Liver/injuries , Mitochondria, Liver/drug effects , Plants, Medicinal/chemistry , Rhizome/chemistry , Animals , Apoptosis/drug effects , Carbon Tetrachloride/toxicity , Centrifugation , Chromatography, Liquid , Drugs, Chinese Herbal/chemistry , Drugs, Chinese Herbal/pharmacology , Humans , Ligands , Liver/drug effects , Liver/pathology , Mass Spectrometry , Mitochondria/drug effects , Mitochondria, Liver/chemistry , Mitochondria, Liver/pathology , Oxidative Stress/drug effects , Plant Roots/chemistry , Protective Agents/chemistry , Protective Agents/pharmacology , Rats , Ultrafiltration
10.
Proc Natl Acad Sci U S A ; 116(1): 303-312, 2019 01 02.
Article in English | MEDLINE | ID: mdl-30541894

ABSTRACT

Mitochondria are metabolic organelles that are essential for mammalian life, but the dynamics of mitochondrial metabolism within mammalian tissues in vivo remains incompletely understood. While whole-tissue metabolite profiling has been useful for studying metabolism in vivo, such an approach lacks resolution at the cellular and subcellular level. In vivo methods for interrogating organellar metabolites in specific cell types within mammalian tissues have been limited. To address this, we built on prior work in which we exploited a mitochondrially localized 3XHA epitope tag (MITO-Tag) for the fast isolation of mitochondria from cultured cells to generate MITO-Tag Mice. Affording spatiotemporal control over MITO-Tag expression, these transgenic animals enable the rapid, cell-type-specific immunoisolation of mitochondria from tissues, which we verified using a combination of proteomic and metabolomic approaches. Using MITO-Tag Mice and targeted and untargeted metabolite profiling, we identified changes during fasted and refed conditions in a diverse array of mitochondrial metabolites in hepatocytes and found metabolites that behaved differently at the mitochondrial versus whole-tissue level. MITO-Tag Mice should have utility for studying mitochondrial physiology, and our strategy should be generally applicable for studying other mammalian organelles in specific cell types in vivo.


Subject(s)
Epitopes/immunology , Mitochondria/immunology , Animals , Hepatocytes/metabolism , Immunoblotting , Lipids/physiology , Male , Metabolomics/methods , Mice , Mice, Inbred C57BL , Mice, Transgenic , Mitochondria/chemistry , Mitochondria/metabolism , Mitochondria/physiology , Mitochondria, Liver/chemistry , Mitochondria, Liver/immunology , Mitochondria, Liver/metabolism , Mitochondria, Liver/physiology , Proteomics/methods
11.
Chem Biol Interact ; 296: 198-210, 2018 Dec 25.
Article in English | MEDLINE | ID: mdl-30292691

ABSTRACT

Triterpenoids have multiple biological properties, although little information is available regarding their toxicity. The present study evaluates the toxicity of two new synthetic lupane derivatives using distinct biological models including synthetic lipids membranes, isolated liver and heart mitochondria fractions, and cell lines in culture. The two novel triterpenoids caused perturbations in the organization of synthetic lipid bilayers, leading to changes in membrane fluidity. Inhibition of cell proliferation and mitochondrial and nuclear morphological alterations were also identified. Inhibition of mitochondrial oxygen consumption, transmembrane electric potential depolarization and induction of the mitochondrial permeability transition pore was observed, although effects on isolated mitochondrial fractions were tissue-dependent (e.g. liver vs. heart). The size and length of hydrocarbon chains in the two molecules appear to be determinant for the degree of interaction with mitochondria, especially in the whole cell environment, where more barriers for diffusion exist. The results suggest that the positively charged triterpenoids target mitochondria and disrupt bioenergetics.


Subject(s)
Lipid Bilayers/antagonists & inhibitors , Mitochondria, Heart/drug effects , Mitochondria, Liver/drug effects , Models, Biological , Triterpenes/toxicity , Animals , Anions/antagonists & inhibitors , Cell Proliferation/drug effects , Cells, Cultured , Humans , Lipid Bilayers/metabolism , Male , Mitochondria, Heart/chemistry , Mitochondria, Heart/metabolism , Mitochondria, Liver/chemistry , Mitochondria, Liver/metabolism , Mitochondrial Membrane Transport Proteins/drug effects , Mitochondrial Permeability Transition Pore , Molecular Conformation , Rats , Rats, Wistar , Triterpenes/chemistry
12.
Br J Nutr ; 119(4): 368-380, 2018 02.
Article in English | MEDLINE | ID: mdl-29498345

ABSTRACT

The incidence of obesity and its metabolic complications are rapidly increasing and become a major public health issue. This trend is associated with an increase in the prevalence of non-alcoholic fatty liver disease (NAFLD), insulin resistance and diabetes. The sequence of events leading to NAFLD progression and mitochondrial dysfunction and their interrelation remains to be elucidated. This study aimed to explore the installation and progression of NAFLD and its association with the liver mitochondrial structure and activity changes in rats fed an obesogenic diet up to 20 weeks. Male Wistar rats were fed either a standard or high-fat-high-fructose (HFHFR) diet and killed on 4, 8, 12, 16 and 20 weeks of diet intake. Rats fed the HFHFR diet developed mildly overweight, associated with increased adipose tissue weight, hepatic steatosis, hyperglycaemia and hyperinsulinaemia after 8 weeks of HFHFR diet. Hepatic steatosis and many biochemical modifications plateaued at 8-12 weeks of HFHFR diet with slight amelioration afterwards. Interestingly, several biochemical and physiological parameters of mitochondrial function, as well as its phospholipid composition, in particular cardiolipin content, were tightly related to hepatic steatosis installation. These results showed once again the interrelation between hepatic steatosis development and mitochondrial activity alterations without being able to say whether the mitochondrial alterations preceded or followed the installation/progression of hepatic steatosis. Because both hepatic steatosis and mitochondrial alterations occurred as early as 4 weeks of diet, future studies should consider these four 1st weeks to reveal the exact interconnection between these major consequences of obesogenic diet intake.


Subject(s)
Diet, High-Fat/adverse effects , Fatty Liver/etiology , Fructose/administration & dosage , Fructose/adverse effects , Mitochondria, Liver/pathology , Adipose Tissue/growth & development , Analysis of Variance , Animals , Cell Respiration , Dietary Carbohydrates/administration & dosage , Dietary Carbohydrates/adverse effects , Glucose Intolerance/diagnosis , Hyperglycemia/etiology , Hyperinsulinism/etiology , Lipids/analysis , Liver/chemistry , Male , Membrane Potential, Mitochondrial , Mitochondria, Liver/chemistry , Mitochondria, Liver/physiology , Overweight/etiology , Phospholipids/chemistry , Phospholipids/classification , Phospholipids/isolation & purification , Phospholipids/metabolism , Random Allocation , Rats , Rats, Wistar , Reactive Oxygen Species/metabolism
13.
Anal Chem ; 90(7): 4370-4379, 2018 04 03.
Article in English | MEDLINE | ID: mdl-29506379

ABSTRACT

Resolving the heterogeneity of particle populations by size is important when the particle size is a signature of abnormal biological properties leading to disease. Accessing size heterogeneity in the sub-micrometer regime is particularly important to resolve populations of subcellular species or diagnostically relevant bioparticles. Here, we demonstrate a ratchet migration mechanism capable of separating sub-micrometer sized species by size and apply it to biological particles. The phenomenon is based on a deterministic ratchet effect, is realized in a microfluidic device, and exhibits fast migration allowing separation in tens of seconds. We characterize this phenomenon extensively with the aid of a numerical model allowing one to predict the speed and resolution of this method. We further demonstrate the deterministic ratchet migration with two sub-micrometer sized beads as model system experimentally as well as size-heterogeneous mouse liver mitochondria and liposomes as model system for other organelles. We demonstrate excellent agreement between experimentally observed migration and the numerical model.


Subject(s)
Liposomes/isolation & purification , Microfluidic Analytical Techniques , Mitochondria, Liver/chemistry , Organelles/chemistry , Animals , Liposomes/chemistry , Mice , Particle Size , Surface Properties
14.
Biochim Biophys Acta Bioenerg ; 1858(12): 955-965, 2017 Dec.
Article in English | MEDLINE | ID: mdl-28866380

ABSTRACT

Mitochondria exhibit suppressed ATP production, membrane potential (∆Ψmt) polarization and reactive oxygen species (ROS) bursts during some cellular metabolic transitions. Although mitochondrial ROS release is influenced by ∆Ψmt and respiratory state, the relationship between these properties remains controversial primarily because they have not been measured simultaneously. We developed a multiparametric method for probing mitochondrial function that allowed precise characterization of the temporal relationship between ROS, ∆Ψmt and respiration. We uncovered a previously unknown spontaneous ROS spike - termed mitochondrial transition ROS spike (mTRS) - associated with re-polarization of ∆Ψmt that occurs at the transition between mitochondrial energy states. Pharmacological inhibition of complex CI (CI), nicotinamide nucleotide transhydrogenase (NNT) and antioxidant system significantly decreased the ability of mitochondria to exhibit mTRS. NADH levels followed a similar trend to that of ROS during the mTRS, providing a link between CI and NNT in mTRS regulation. We show that (i) mTRS is enhanced by simultaneous activation of CI and complex II (CII); (ii) CI is the principal origin of mTRS; (iii) NNT regulates mTRS via NADH- and ∆Ψmt-dependent mechanisms; (iv) mTRS is not a pH spike; and (v), mTRS changes in amplitude under stress conditions and its occurrence can be a signature of mitochondrial health. Collectively, we uncovered and characterized the biophysical properties and mechanisms of mTRS, and propose it as a potential diagnostic tool for CI-related dysfunctions, and as a biomarker of mitochondrial functional integrity.


Subject(s)
Electron Transport Complex I/chemistry , Mitochondria, Heart/metabolism , Mitochondria, Liver/metabolism , NADP Transhydrogenases/chemistry , Reactive Oxygen Species/chemistry , Adenosine Triphosphate/biosynthesis , Animals , Electron Transport Complex I/metabolism , Glutathione/chemistry , Glutathione/metabolism , Hydrogen-Ion Concentration , Membrane Potential, Mitochondrial , Mitochondria, Heart/chemistry , Mitochondria, Liver/chemistry , NAD/chemistry , NAD/metabolism , NADP Transhydrogenases/metabolism , Oncorhynchus mykiss , Oxidative Stress , Reactive Oxygen Species/metabolism , Thioredoxins/chemistry , Thioredoxins/metabolism
15.
Anal Chim Acta ; 982: 200-208, 2017 Aug 22.
Article in English | MEDLINE | ID: mdl-28734361

ABSTRACT

Mitochondria play essential roles in both energy metabolism and cell signaling, which are critical for cell survival. Although significant efforts have been invested in understanding mitochondrial biology, methods for intact mitochondria preparation are technically challenging and remain to be improved. New methods for heterogeneous mitochondria purification will therefore boost our understanding on their physiological and biophysical properties. Herein, we developed a novel recycling free-flow isoelectric focusing (RFFIEF) with post-pH gradient sample injection (post-PGSI) for preparative separation of mitochondria. Crude mitochondria of rabbit liver obtained from differential centrifugation were purified by the developed method according to their pI values as six fractions. Transmission electron microscope images revealed that intact mitochondria existed in two fractions of pH 6.24 and 6.61, degenerative mitochondria were in two fractions of pH 5.46 and 5.72, and inner membrane vesicles (IMVs) appeared in the fractions of pH 4.70 and 5.04. Membrane potential measurement proved a dramatic difference between intact mitochondria and IMVs, which reflected the bioactivity of obtained populations. Particularly, proteomics analyses revealed that more number of proteins were identified in the intact fractions than that of IMVs or crude mitochondria, which demonstrated that RFFIEF could be powerful tool for the preparation of intact organelle as well as their proteomic and in-depth biological analysis.


Subject(s)
Isoelectric Focusing , Mitochondria, Liver/chemistry , Mitochondrial Proteins/analysis , Proteomics , Animals , Proton-Motive Force , Rabbits
16.
J Bioenerg Biomembr ; 49(3): 231-239, 2017 Jun.
Article in English | MEDLINE | ID: mdl-28337566

ABSTRACT

The biological membranes are important in cell function but, during development of diseases such as diabetes, they are impaired. Consequently, membrane-associated biological processes are impaired as well. The mitochondria are important organelles where oxidative phosphorylation takes place, a process closely related with the membranes. In general, it is accepted that the development process of diabetes decreases membrane fluidity. However, in some cases, it has been found to increase membrane fluidity of mitochondria but to decrease the Respiratory Control (RC) index. In this study we found an increase of membrane fluidity and an increase of the RC at an early phase of the development of a type 2 diabetes model. We measured the lipoperoxidation, analyzed the fatty acids composition by gas chromatography, and assessed membrane fluidity using three fluorescent monitors located at different depths inside the bilayer, dipyrenilpropane (DPyP), diphenylhexatriene (DPH), and trimethylammonium diphenylhexatriene (TMA-DPH). Our findings indicate that in the initial stage of diabetes development, when lipoperoxidation still is not significant, the membrane fluidity of liver mitochondria increases because of the increment in the unsaturated to saturated fatty acids ratio (U/S), thus producing an increase of the RC. The membrane fluidity is not the same at all depths in the bilayer. Contrary to the results obtained in mitochondria, the diabetes induced a decrease in the U/S fatty acids ratio of liver total lipids, indicating that the mitochondria might have an independent mechanism for regulating its fatty acids composition.


Subject(s)
Diabetes Mellitus, Type 2/pathology , Membrane Fluidity , Mitochondria, Liver/ultrastructure , Animals , Cell Respiration , Fatty Acids/analysis , Lipid Peroxides/analysis , Mitochondria, Liver/chemistry , Mitochondrial Membranes , Oxidative Phosphorylation , Rats, Wistar
17.
Anal Chem ; 88(18): 9103-10, 2016 09 20.
Article in English | MEDLINE | ID: mdl-27532481

ABSTRACT

Lipids from different classes sometimes can exhibit the same exact mass upon electrospray ionization; this presents an analytical challenge in lipidomics. In the negative ionization mode, for example, this can occur with phosphatidylcholines (PCs) and phosphatidylserines (PSs), making them indistinguishable in the absence of fragmentation data. PSs are found at low concentrations in biological samples, making MS/MS spectra difficult to obtain. Moreover, while PCs and PSs are distinguishable in the positive mode, PSs do not ionize as well as PCs, and their ionization is suppressed by the PCs. Here, we show that, in the negative ionization mode, substituting protiated LC-MS additives with their deuterated forms provides a way to distinguish PCs and PSs without chemical derivatization. The method described leverages the differential ionization mechanism of PCs and PSs. PCs are ionized via adduction with salts, whereas PSs ionize via hydrogen abstraction. Substituting the salts used for LC-MS with their deuterated form shifts the mass of PCs by the number of deuterium atoms in the salt, while the mass of PSs remains the same. This comparative shift enables their direct differentiation. We demonstrate that the use of deuterated formate shifts the mass of PCs and provides a direct method to distinguish PCs and PSs, even at biologically relevant low concentrations. The utility of the method was established and validated in the simultaneous analysis of PCs and PSs in lipid extracts from isolated liver mitochondria in two different rat strains. Thirteen low concentration PSs were identified that would otherwise not have been distinguishable from low concentration PCs.


Subject(s)
Mass Spectrometry/methods , Mitochondria, Liver/chemistry , Phosphatidylcholines/analysis , Phosphatidylserines/analysis , Animals , Chromatography, Liquid/methods , Deuterium/analysis , Male , Rats
18.
Biochemistry (Mosc) ; 81(4): 432-8, 2016 Apr.
Article in English | MEDLINE | ID: mdl-27293102

ABSTRACT

Oxidative stress is one of the major factors underlying mitochondrial dysfunctions. One of the most promising approaches for alleviating or preventing oxidative stress is the use of cationic uncouplers that accumulate in mitochondria in accordance to the level of the membrane potential, producing "mild" uncoupling. Based on this theoretical background, cationic rhodamine 19 butyl ester (C4R1) was synthesized and tested within the framework of the research project guided by V. P. Skulachev. The results of these tests were presented (Khailova et al. (2014) Biochim. Biophys. Acta, 1837, 1739-1747), but one publication could not accommodate all data on interactions of C4R1 with isolated mitochondria. In addition to previously presented data, we found that the effect of C4R1 on the rate of oxygen uptake is subject to temporal variations, which probably reflects variable rates of C4R1 entry into the mitochondria. Consequently, transient stimulation of respiration can be followed by inhibition. C4R1 was found not to shunt electron flow from complex I of the respiratory chain; it largely acted as an inhibitor of complex I in the respiratory chain and showed antioxidant activity. C4R1 taken at low, non-uncoupling concentrations enhanced the uncoupling activity of fatty acids (e.g. palmitate). Relatively low C4R1 concentrations stimulated opening of a nonspecific Ca2+/Pi-dependent pore. ATP synthesis and hydrolysis were substantially inhibited by C4R1 at low concentrations that had no appreciable effects on respiration in states 4 and 3 and only slightly decreased the membrane potential. Besides, conditions were revealed allowing correct evaluation of the membrane potential generated at the inner mitochondrial membrane with safranin O upon oxidation of both succinate and NAD-dependent substrates in the presence of C4R1.


Subject(s)
Mitochondria, Liver/metabolism , Rhodamines/metabolism , Adenosine Triphosphate/metabolism , Animals , Membrane Potential, Mitochondrial , Mitochondria, Liver/chemistry , Oxidation-Reduction , Oxygen/metabolism , Rats , Rhodamines/chemical synthesis , Rhodamines/chemistry , Succinates/chemistry
19.
Phys Chem Chem Phys ; 18(24): 16476-82, 2016 Jun 28.
Article in English | MEDLINE | ID: mdl-27265316

ABSTRACT

ortho-Carborane (1,2-C2B10H12) was found to be a carrier of protons in both mitochondrial and artificial lipid membranes, suggesting that this dicarborane can reversibly release hydrogen ions and diffuse through the membranes in neutral and anionic forms. Similar to conventional uncouplers (e.g. 2,4-dinitrophenol), o-carborane stimulated mitochondrial respiration and decreased the membrane potential at concentrations of tens of micromoles. Protonophoric activity of o-carborane was observed both by a fluorometric assay using pyranine-loaded liposomes and electrical current measurements across planar lipid bilayers. Substantial contribution of the proton flux to the o-carborane-mediated current was proved by a shift of the zero current voltage upon imposing a pH gradient across the membrane. Meta-carborane (1,7-C2B10H12) lacked the protonophoric activity in line with its reduced C-H acidity. The results suggest that weak C-H acids can exhibit protonophoric activity in the biological environment. The finding of a new class of protonophoric compounds is of substantial interest due to promising anti-obesity and anti-diabetic properties of uncouplers.


Subject(s)
Boranes/chemistry , Boron Compounds/pharmacology , Lewis Acids/pharmacology , Lipid Bilayers/chemistry , Mitochondrial Membranes/chemistry , Uncoupling Agents/pharmacology , Animals , Arylsulfonates/chemistry , Boron Compounds/chemistry , Hydrogen-Ion Concentration , Kinetics , Lewis Acids/chemistry , Liposomes/chemistry , Membrane Potential, Mitochondrial/drug effects , Mitochondria, Liver/chemistry , Mitochondria, Liver/metabolism , Phosphatidylcholines/chemistry , Rats , Uncoupling Agents/chemistry , Valinomycin/pharmacology
20.
Biometals ; 29(3): 543-50, 2016 06.
Article in English | MEDLINE | ID: mdl-27138944

ABSTRACT

Organoseleno-compounds have been investigated for its beneficial effects against methylmercury toxicity. In this way, diphenyl diselenide (PhSe)2 was demonstrated to decrease Hg accumulation in mice, protect against MeHg-induced mitochondrial dysfunction, and protect against the overall toxicity of this metal. In the present study we aimed to investigate if co-treatment with (PhSe)2 and MeHg could decrease accumulation of Hg in liver slices of rats. Rat liver slices were co-treated with (PhSe)2 (0.5; 5 µM) and/or MeHg (25 µM) for 30 min at 37 °C and Se and Hg levels were measured by inductively coupled plasma mass spectrometry (ICP-MS) in the slices homogenate, P1 fraction, mitochondria and incubation medium. Co-treatment with (PhSe)2 and MeHg did not significantly alter Se levels in any of the samples when compared with compounds alone. In addition, co-treatment with (PhSe)2 and MeHg did not decrease Hg levels in any of the samples tested, although, co-incubation significantly increased Hg levels in homogenate. We suggest here that (PhSe)2 could exert its previously demonstrated protective effects not by reducing MeHg levels, but forming a complex with MeHg avoiding it to bind to critical molecules in cell.


Subject(s)
Benzene Derivatives/pharmacology , Liver/chemistry , Liver/drug effects , Mercury/analysis , Methylmercury Compounds/pharmacology , Organoselenium Compounds/pharmacology , Selenium/analysis , Animals , Benzene Derivatives/administration & dosage , Male , Mass Spectrometry , Methylmercury Compounds/administration & dosage , Mitochondria, Liver/chemistry , Mitochondria, Liver/drug effects , Mitochondria, Liver/metabolism , Organoselenium Compounds/administration & dosage , Rats , Rats, Wistar
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