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1.
Br J Haematol ; 204(2): 576-584, 2024 02.
Article in English | MEDLINE | ID: mdl-37743097

ABSTRACT

The prognostic impact of PICALM::MLLT10 status in childhood leukaemia is not well described. Ten International Berlin Frankfurt Münster-affiliated study groups and the Children's Oncology Group collaborated in this multicentre retrospective study. The presence of the PICALM::MLLT10 fusion gene was confirmed by fluorescence in situ hybridization and/or RNA sequencing at participating sites. Ninety-eight children met the study criteria. T-cell acute lymphoblastic leukaemia (T-ALL) and acute myeloid leukaemia (AML) predominated 55 (56%) and 39 (40%) patients, respectively. Most patients received a chemotherapy regimen per their disease phenotype: 58% received an ALL regimen, 40% an AML regimen and 1% a hybrid regimen. Outcomes for children with PICALM::MLLT10 ALL were reasonable: 5-year event-free survival (EFS) 67% and 5-year overall survival (OS) 76%, but children with PICALM::MLLT10 AML had poor outcomes: 5-year EFS 22% and 5-year OS 26%. Haematopoietic stem cell transplant (HSCT) did not result in a significant improvement in outcomes for PICALM::MLLT10 AML: 5-year EFS 20% for those who received HSCT versus 23% for those who did not (p = 0.6) and 5-year OS 37% versus 36% (p = 0.7). In summary, this study confirms that PICALM::MLLT10 AML is associated with a dismal prognosis and patients cannot be salvaged with HSCT; exploration of novel therapeutic options is warranted.


Subject(s)
Leukemia, Myeloid, Acute , Monomeric Clathrin Assembly Proteins , Child , Humans , In Situ Hybridization, Fluorescence , Retrospective Studies , Oncogene Proteins, Fusion/genetics , Treatment Outcome , Leukemia, Myeloid, Acute/genetics , Transcription Factors/genetics , Acute Disease , Prognosis , Monomeric Clathrin Assembly Proteins/genetics
2.
J Alzheimers Dis ; 96(4): 1651-1661, 2023.
Article in English | MEDLINE | ID: mdl-38007652

ABSTRACT

BACKGROUND: APOE ɛ4 and PICALM are established genes associated with risk of late-onset Alzheimer's disease (AD). Previous study indicated interaction of PICALM with APOE ɛ4 in AD patients. OBJECTIVE: To explore whether PICALM variation could moderate the influences of APOE ɛ4 on AD pathology biomarkers and cognition in pre-dementia stage. METHODS: A total of 1,034 non-demented participants (mean age 74 years, 56% females, 40% APOE ɛ4 carriers) were genotyped for PICALM rs3851179 and APOE ɛ4 at baseline and were followed for influences on changes of cognition and cerebrospinal fluid (CSF) AD markers in six years. The interaction effects were examined via regression models adjusting for age, gender, education, and cognitive diagnosis. RESULTS: The interaction term of rs3851179×APOE ɛ4 accounted for a significant amount of variance in baseline general cognition (p = 0.039) and memory function (p = 0.002). The relationships of APOE ɛ4 with trajectory of CSF Aß42 (p = 0.007), CSF P-tau181 (p = 0.003), CSF T-tau (p = 0.001), and memory function (p = 0.017) were also moderated by rs3851179 variation. CONCLUSIONS: APOE ɛ4 carriers experienced slower clinical and pathological progression when they had more protective A alleles of PICALM rs3851179. These findings firstly revealed the gene-gene interactive effects of PICALM with APOE ɛ4 in pre-dementia stage.


Subject(s)
Alzheimer Disease , Cognitive Dysfunction , Monomeric Clathrin Assembly Proteins , Female , Humans , Aged , Male , Alzheimer Disease/psychology , Amyloid beta-Peptides/cerebrospinal fluid , Apolipoprotein E4/genetics , tau Proteins/cerebrospinal fluid , Biomarkers/cerebrospinal fluid , Apolipoproteins E/genetics , Cognitive Dysfunction/genetics , Monomeric Clathrin Assembly Proteins/genetics
3.
Cell Mol Life Sci ; 80(10): 295, 2023 Sep 20.
Article in English | MEDLINE | ID: mdl-37726569

ABSTRACT

Recently, the localization of amyloid precursor protein (APP) into reversible nanoscale supramolecular assembly or "nanodomains" has been highlighted as crucial towards understanding the onset of the molecular pathology of Alzheimer's disease (AD). Surface expression of APP is regulated by proteins interacting with it, controlling its retention and lateral trafficking on the synaptic membrane. Here, we evaluated the involvement of a key risk factor for AD, PICALM, as a critical regulator of nanoscale dynamics of APP. Although it was enriched in the postsynaptic density, PICALM was also localized to the presynaptic active zone and the endocytic zone. PICALM colocalized with APP and formed nanodomains with distinct morphological properties in different subsynaptic regions. Next, we evaluated if this localization to subsynaptic compartments was regulated by the C-terminal sequences of APP, namely, the "Y682ENPTY687" domain. Towards this, we found that deletion of C-terminal regions of APP with partial or complete deletion of Y682ENPTY687, namely, APP-Δ9 and APP-Δ14, affected the lateral diffusion and nanoscale segregation of APP. Lateral diffusion of APP mutant APP-Δ14 sequence mimicked that of a detrimental Swedish mutant of APP, namely, APP-SWE, while APP-Δ9 diffused similar to wild-type APP. Interestingly, elevated expression of PICALM differentially altered the lateral diffusion of the APP C-terminal deletion mutants. These observations confirm that the C-terminal sequence of APP regulates its lateral diffusion and the formation of reversible nanoscale domains. Thus, when combined with autosomal dominant mutations, it generates distinct molecular patterns leading to onset of Alzheimer's disease (AD).


Subject(s)
Alzheimer Disease , Arthrogryposis , Monomeric Clathrin Assembly Proteins , Humans , Amyloid beta-Protein Precursor/genetics , Alzheimer Disease/genetics , Mutation , Risk Factors , Monomeric Clathrin Assembly Proteins/genetics
4.
Acta Neurobiol Exp (Wars) ; 83(2): 127-139, 2023.
Article in English | MEDLINE | ID: mdl-37493530

ABSTRACT

APOE­Îµ4 genotype (apolipoprotein E, epsilon 4) is the strongest genetic risk factor for Alzheimer's disease (AD). Despite years of research, it is still not known how it contributes to dementia development. APOE has been implicated in many AD pathology mechanisms, like Aß clearance, brain metabolism, changes within microglia and other glial functions and inflammatory processes. In fact, immunological/inflammatory processes are recently discussed as an important factor in Alzheimer's development and granulocyte profiles changes are reported in patients. However, the exact link between the immune system and risk­genes is unknown. In particular, it is not known whether and how they interact throughout the lifetime, before the disease onset. The aim of the study was to investigate the relationship between granulocyte count and the APOE/PICALM genes in healthy individuals with an increased genetic risk of AD. An exploratory analysis regarding other blood cells was also conducted. Blood samples were collected from 77 healthy middle­aged (50-63 years old) participants, who were also asked to complete a health and life­style questionnaires. Groups with different AD risk­genes were compared. Differences in granulocyte profiles were found in healthy carriers of AD risk­genes who had slightly elevated eosinophil levels as compared to non-risk carriers. An exploratory analysis showed some alteration in mean corpuscular hemoglobin content and concentration (MCH/MCHC) levels between risk­carriers subgroups and non-risk carriers. No other differences in blood count or lipoprotein profile were found between healthy APOE/PICALM risk­carriers and non-risk carriers. Longitudinal studies will reveal if and how those changes contribute to the development of AD pathology.


Subject(s)
Alzheimer Disease , Monomeric Clathrin Assembly Proteins , Middle Aged , Humans , Alzheimer Disease/metabolism , Apolipoprotein E4/genetics , Apolipoproteins E/genetics , Genotype , Erythrocytes/metabolism , Erythrocytes/pathology , Granulocytes/metabolism , Granulocytes/pathology , Monomeric Clathrin Assembly Proteins/genetics
6.
Pediatr Hematol Oncol ; 40(8): 778-785, 2023.
Article in English | MEDLINE | ID: mdl-37171905

ABSTRACT

Mixed phenotype leukemia (MPAL) is a rare type of acute leukemia with blasts that co-express antigens of more than one lineage on the same cell or that have separate populations of blasts of different lineages. Here, we report a five-year-old male with inguinal lymphadenopathy diagnosed with MPAL-T/Myeloid MPAL-T/M. The clone demonstrated lineage and immunophenotypically distinct blast populations in the bone marrow and lymph nodes. Bone marrow cytogenetic studies confirmed a rare PICALM::MLLT10 gene fusion. Patients with this fusion gene have been found to have high risk features and poor survival rates in several small case series. Our case report highlights an unusual presentation in medullary and extramedullary sites, within a pediatric patient. At the time of submission of this case report, the patient has shown good response to chemotherapy and continues to be in remission.


Subject(s)
Leukemia, Myeloid, Acute , Monomeric Clathrin Assembly Proteins , Male , Humans , Child , Child, Preschool , Leukemia, Myeloid, Acute/genetics , Leukemia, Myeloid, Acute/pathology , Acute Disease , Bone Marrow/pathology , Transcription Factors/genetics , Gene Rearrangement , Monomeric Clathrin Assembly Proteins/genetics
7.
Cells ; 11(24)2022 12 10.
Article in English | MEDLINE | ID: mdl-36552756

ABSTRACT

Genome-wide association studies (GWAS) have identified the PICALM (Phosphatidylinositol binding clathrin-assembly protein) gene as the most significant genetic susceptibility locus after APOE and BIN1. PICALM is a clathrin-adaptor protein that plays a critical role in clathrin-mediated endocytosis and autophagy. Since the effects of genetic variants of PICALM as AD-susceptibility loci have been confirmed by independent genetic studies in several distinct cohorts, there has been a number of in vitro and in vivo studies attempting to elucidate the underlying mechanism by which PICALM modulates AD risk. While differential modulation of APP processing and Aß transcytosis by PICALM has been reported, significant effects of PICALM modulation of tau pathology progression have also been evidenced in Alzheimer's disease models. In this review, we summarize the current knowledge about PICALM, its physiological functions, genetic variants, post-translational modifications and relevance to AD pathogenesis.


Subject(s)
Alzheimer Disease , Monomeric Clathrin Assembly Proteins , Humans , Alzheimer Disease/genetics , Alzheimer Disease/metabolism , Clathrin/metabolism , Genetic Loci , Genetic Predisposition to Disease , Genome-Wide Association Study , Monomeric Clathrin Assembly Proteins/genetics , Monomeric Clathrin Assembly Proteins/metabolism
8.
J Integr Neurosci ; 21(4): 99, 2022 May 30.
Article in English | MEDLINE | ID: mdl-35864751

ABSTRACT

BACKGROUND: Cognitive interventions (CIs) in the elderly are activities that seek to improve cognitive performance and delay its deterioration. Our objectives were to study potential genetic predictors of how a CI program may influence immediate and delayed episodic verbal memory (EVM). METHODS: 162 participants were elderly individuals without dementia who were randomized into parallel control and experimental groups. Participants underwent genetic testing to analyze the PICALM, ACT, NRG1, BDNF and APOE genes. We performed a broad neuropsychological assessment before and 6 months after the CI. The CI involved multifactorial training (30 sessions). The control group undertook the centre's standard activities. The main outcome measures were the genotype studied as a predictor of post-intervention changes in EVM. RESULTS: We found the CI was associated with improvements in several cognitive functions, including immediate and delayed EVM. While no individual gene was associated with any such change, the interaction between PICALM/ACT (p = 0.008; Eta2 = 0.23) and PICALM/NRG1 (p = 0.029; Eta2 = 0.19) was associated with improved immediate EVM, and the NRG1/BDNF interaction was associated with improved delayed EVM (p = 0.009; Eta2 = 0.21). The APOEε4 genotype was not associated with any change in EVM. CONCLUSIONS: Our study shows that the participants' genotype can have an impact on the results of CIs. Cognitive stress may stimulate the interaction of various genes and as such, different types of CI should be established for distinct groups of people taking into account the individual's characteristics, like genotype, to improve the results of this type of health prevention and promotion activity.


Subject(s)
Memory, Episodic , Monomeric Clathrin Assembly Proteins , Aged , Apolipoproteins E/genetics , Brain-Derived Neurotrophic Factor/genetics , Cognition , Humans , Monomeric Clathrin Assembly Proteins/genetics , Neuregulin-1/genetics , Neuropsychological Tests
9.
Biochem Biophys Res Commun ; 587: 69-77, 2022 01 08.
Article in English | MEDLINE | ID: mdl-34864549

ABSTRACT

The clathrin coat assembly protein AP180 drives endocytosis, which is crucial for numerous physiological events, such as the internalization and recycling of receptors, uptake of neurotransmitters and entry of viruses, including SARS-CoV-2, by interacting with clathrin. Moreover, dysfunction of AP180 underlies the pathogenesis of Alzheimer's disease. Therefore, it is important to understand the mechanisms of assembly and, especially, disassembly of AP180/clathrin-containing cages. Here, we identified AP180 as a novel phosphatidic acid (PA)-binding protein from the mouse brain. Intriguingly, liposome binding assays using various phospholipids and PA species revealed that AP180 most strongly bound to 1-stearoyl-2-docosahexaenoyl-PA (18:0/22:6-PA) to a comparable extent as phosphatidylinositol 4,5-bisphosphate (PI(4,5)P2), which is known to associate with AP180. An AP180 N-terminal homology domain (1-289 aa) interacted with 18:0/22:6-PA, and a lysine-rich motif (K38-K39-K40) was essential for binding. The 18:0/22:6-PA in liposomes in 100 nm diameter showed strong AP180-binding activity at neutral pH. Notably, 18:0/22:6-PA significantly attenuated the interaction of AP180 with clathrin. However, PI(4,5)P2 did not show such an effect. Taken together, these results indicate the novel mechanism by which 18:0/22:6-PA selectively regulates the disassembly of AP180/clathrin-containing cages.


Subject(s)
Clathrin/metabolism , Docosahexaenoic Acids/metabolism , Monomeric Clathrin Assembly Proteins/metabolism , Phosphatidic Acids/metabolism , Animals , Binding Sites , Brain/metabolism , COVID-19/metabolism , COVID-19/virology , Cell Line , Clathrin/chemistry , Docosahexaenoic Acids/chemistry , Endocytosis/physiology , Host Microbial Interactions/physiology , Humans , Mice , Monomeric Clathrin Assembly Proteins/chemistry , Monomeric Clathrin Assembly Proteins/genetics , Phosphatidic Acids/chemistry , Protein Binding , Protein Interaction Domains and Motifs , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , SARS-CoV-2/physiology , Virus Internalization
10.
Neurologia (Engl Ed) ; 36(9): 681-691, 2021.
Article in English | MEDLINE | ID: mdl-34752346

ABSTRACT

INTRODUCTION: Alzheimer disease risk polymorphisms have been studied in patients with dementia, but have not yet been explored in mild cognitive impairment (MCI) in our population; nor have they been addressed in relation to cognitive variables, which can be predictive biomarkers of disease. OBJECTIVE: To evaluate cognitive performance and presence of polymorphisms of the genes SORL1(rs11218304), PVRL2(rs6859), CR1(rs6656401), TOMM40(rs2075650), APOE (isoforms ε2, ε3, ε4), PICALM(rs3851179), GWAS_14q(rs11622883), BIN1(rs744373), and CLU(rs227959 and rs11136000) in patients with MCI and healthy individuals. METHODOLOGY: We performed a cross-sectional, exploratory, descriptive study of a prospective cohort of participants selected by non-probabilistic sampling, evaluated with neurological, neuropsychological, and genetic testing, and classified as cognitively healthy individuals and patients with MCI. Cognition was evaluated with the Neuronorma battery and analysed in relation to the polymorphic variants by means of measures of central tendency, confidence intervals, and nonparametric statistics. RESULTS: We found differences in performance in language and memory tasks between carriers and non-carriers of BIN1, CLU, and CR1 variants and a trend towards poor cognitive performance for PICALM, GWAS_14q, SORL1, and PVRL2 variants; the APOE and TOMM40 variants were not associated with poor cognitive performance. DISCUSSION: Differences in cognitive performance associated with these polymorphic variants may suggest that the mechanisms regulating these genes could have an effect on cognition in the absence of dementia; however, this study was exploratory and hypotheses based on these results must be explored in larger samples.


Subject(s)
Cognitive Dysfunction , Monomeric Clathrin Assembly Proteins , Adaptor Proteins, Signal Transducing , Apolipoproteins E/genetics , Clusterin/genetics , Cognition , Cognitive Dysfunction/genetics , Cross-Sectional Studies , Genetic Predisposition to Disease , Genome-Wide Association Study , Humans , LDL-Receptor Related Proteins , Membrane Transport Proteins/genetics , Mitochondrial Precursor Protein Import Complex Proteins , Monomeric Clathrin Assembly Proteins/genetics , Nuclear Proteins , Polymorphism, Single Nucleotide , Prospective Studies , Receptors, Complement 3b/genetics , Tumor Suppressor Proteins
11.
Sci Rep ; 11(1): 20465, 2021 10 14.
Article in English | MEDLINE | ID: mdl-34650147

ABSTRACT

PICALM and CLU genes have been linked to alterations in brain biochemical processes that may have an impact on Alzheimer's disease (AD) development and neurophysiological dynamics. The aim of this study is to analyze the relationship between the electroencephalographic (EEG) activity and the PICALM and CLU alleles described as conferring risk or protective effects on AD patients and healthy controls. For this purpose, EEG activity was acquired from: 18 AD patients and 12 controls carrying risk alleles of both PICALM and CLU genes, and 35 AD patients and 12 controls carrying both protective alleles. Relative power (RP) in the conventional EEG frequency bands (delta, theta, alpha, beta, and gamma) was computed to quantify the brain activity at source level. In addition, spatial entropy (SE) was calculated in each band to characterize the regional distribution of the RP values throughout the brain. Statistically significant differences in global RP and SE at beta band (p-values < 0.05, Mann-Whitney U-test) were found between genotypes in the AD group. Furthermore, RP showed statistically significant differences in 58 cortical regions out of the 68 analyzed in AD. No statistically significant differences were found in the control group at any frequency band. Our results suggest that PICALM and CLU AD-inducing genotypes are involved in physiological processes related to disruption in beta power, which may be associated with physiological disturbances such as alterations in beta-amyloid and neurotransmitter metabolism.


Subject(s)
Alzheimer Disease/genetics , Clusterin/genetics , Electroencephalography , Monomeric Clathrin Assembly Proteins/genetics , Aged , Aged, 80 and over , Alzheimer Disease/physiopathology , Brain , Female , Genetic Predisposition to Disease , Genotype , Humans , Male
12.
Nat Commun ; 12(1): 4130, 2021 07 05.
Article in English | MEDLINE | ID: mdl-34226546

ABSTRACT

Chromosomal translocations of the AF10 (or MLLT10) gene are frequently found in acute leukemias. Here, we show that the PZP domain of AF10 (AF10PZP), which is consistently impaired or deleted in leukemogenic AF10 translocations, plays a critical role in blocking malignant transformation. Incorporation of functional AF10PZP into the leukemogenic CALM-AF10 fusion prevents the transforming activity of the fusion in bone marrow-derived hematopoietic stem and progenitor cells in vitro and in vivo and abrogates CALM-AF10-mediated leukemogenesis in vivo. Crystallographic, biochemical and mutagenesis studies reveal that AF10PZP binds to the nucleosome core particle through multivalent contacts with the histone H3 tail and DNA and associates with chromatin in cells, colocalizing with active methylation marks and discriminating against the repressive H3K27me3 mark. AF10PZP promotes nuclear localization of CALM-AF10 and is required for association with chromatin. Our data indicate that the disruption of AF10PZP function in the CALM-AF10 fusion directly leads to transformation, whereas the inclusion of AF10PZP downregulates Hoxa genes and reverses cellular transformation. Our findings highlight the molecular mechanism by which AF10 targets chromatin and suggest a model for the AF10PZP-dependent CALM-AF10-mediated leukemogenesis.


Subject(s)
Acute Disease , Leukemia, Myeloid, Acute/genetics , Transcription Factors/chemistry , Transcription Factors/genetics , Transcription Factors/metabolism , Translocation, Genetic/genetics , Animals , Carcinogenesis/genetics , Cell Transformation, Neoplastic/genetics , Chromatin , HEK293 Cells , Histones/metabolism , Humans , Leukemia, Myeloid, Acute/metabolism , Methylation , Mice , Models, Molecular , Monomeric Clathrin Assembly Proteins/genetics , Monomeric Clathrin Assembly Proteins/metabolism , Nucleosomes , Protein Conformation
13.
Biochem Biophys Res Commun ; 570: 103-109, 2021 09 17.
Article in English | MEDLINE | ID: mdl-34311200

ABSTRACT

Degradation and clearance of cellular waste in the autophagic and endo-lysosomal systems is important for normal physiology and prevention of common late-onset diseases such as Alzheimer's disease (AD). Phosphatidylinostol-binding clathrin assembly protein (PICALM) is a robust AD risk factor gene and encodes an endosomal protein clathrin-binding cytosolic protein, reduction of which is known to exacerbate tauopathy. Although PICALM is known to regulate initiation of autophagy, its role in maturation of lysosomal enzymes required for proteolysis has not been studied. We sought to determine the importance of PICALM for cellular degradative function by disrupting exon 1 of PICALM using CRISPR/Cas9 in HeLa cells. PICALM disruption increased numbers of early endosomes. Proteomic analysis of endosome-enriched samples showed that disrupting exon 1 of PICALM increased the abundance of lysosomal enzymes in these organelles, and western blotting revealed disruption to processing and maturation of the lysosomal protease, cathepsin D, and a deficit in autophagy. This study shows PICALM is important for the correct maturation of lysosomal enzymes and efficient proteolytic function in the lysosome.


Subject(s)
Cathepsin D/metabolism , Lysosomes/metabolism , Monomeric Clathrin Assembly Proteins/metabolism , Protein Processing, Post-Translational , Endosomes/metabolism , Exons/genetics , HeLa Cells , Humans , Monomeric Clathrin Assembly Proteins/genetics , Protein Isoforms/metabolism , Substrate Specificity
14.
Mol Cancer ; 20(1): 6, 2021 01 04.
Article in English | MEDLINE | ID: mdl-33397371

ABSTRACT

De novo and acquired resistance, which are mainly mediated by genetic alterations, are barriers to effective routine chemotherapy. However, the mechanisms underlying gastric cancer (GC) resistance to chemotherapy are still unclear. We showed that the long noncoding RNA CRNDE was related to the chemosensitivity of GC in clinical samples and a PDX model. CRNDE was decreased and inhibited autophagy flux in chemoresistant GC cells. CRNDE directly bound to splicing protein SRSF6 to reduce its protein stability and thus regulate alternative splicing (AS) events. We determined that SRSF6 regulated the PICALM exon 14 skip splice variant and triggered a significant S-to-L isoform switch, which contributed to the expression of the long isoform of PICALM (encoding PICALML). Collectively, our findings reveal the key role of CRNDE in autophagy regulation, highlighting the significance of CRNDE as a potential prognostic marker and therapeutic target against chemoresistance in GC.


Subject(s)
Alternative Splicing/genetics , Drug Resistance, Neoplasm/genetics , Monomeric Clathrin Assembly Proteins/genetics , Phosphoproteins/metabolism , RNA, Long Noncoding/metabolism , Serine-Arginine Splicing Factors/metabolism , Stomach Neoplasms/genetics , Autophagy/drug effects , Autophagy/genetics , Cell Line, Tumor , Fluorouracil/pharmacology , Humans , Monomeric Clathrin Assembly Proteins/metabolism , Oxaliplatin/pharmacology , Proteasome Endopeptidase Complex/metabolism , Proteolysis/drug effects , RNA, Long Noncoding/genetics , Stomach Neoplasms/pathology , Ubiquitination/drug effects
15.
Mov Disord ; 36(1): 118-123, 2021 01.
Article in English | MEDLINE | ID: mdl-32914893

ABSTRACT

BACKGROUND: Cognitive impairment is one of the most disabling nonmotor symptoms in Parkinson's disease (PD). Recently, a genome-wide association study in Alzheimer's disease has identified the PICALM rs3851179 polymorphism as one of the most significant susceptibility genes for Alzheimer's disease after APOE. The aim of this study was to determine the potential role of PICALM and its genetic interaction with APOE in the development of cognitive decline in PD. METHODS: A discovery cohort of 712 patients with PD were genotyped for PICALM (rs3851179) and APOE (rs429358 and rs7412) polymorphisms. The association of PICALM and APOE-PICALM genetic interaction with cognitive dysfunction in PD was studied using logistic regression models, and the relationship of PICALM with cognitive decline onset was assessed with Cox regression analysis. PICALM effect was then replicated in an international, independent cohort (Parkinson's Progression Markers Initiative, N = 231). RESULTS: PICALM rs3851179 TT genotype was significantly associated with a decreased risk of cognitive impairment in PD (TT vs. CC + CT, P = 0.041, odds ratio = 0.309). Replication studies further demonstrated its protective effect on cognitive impairment in PD. In addition, the protective effect of the PICALM rs3851179 TT genotype was more pronounced in the APOE ε4 (-) carriers from the discovery cohort (P = 0.037, odds ratio = 0.241), although these results were not replicated in the Parkinson's Progression Markers Initiative cohort. CONCLUSIONS: Our results support the fact that PICALM is associated with cognitive impairment in PD. The understanding of its contribution to cognitive decline in PD could provide new targets for the development of novel therapies. © 2020 International Parkinson and Movement Disorder Society.


Subject(s)
Alzheimer Disease , Cognitive Dysfunction , Monomeric Clathrin Assembly Proteins , Parkinson Disease , Cognitive Dysfunction/genetics , Genetic Predisposition to Disease , Genome-Wide Association Study , Humans , Monomeric Clathrin Assembly Proteins/genetics , Parkinson Disease/complications , Parkinson Disease/genetics , Polymorphism, Single Nucleotide/genetics
16.
Pharmacogenomics ; 21(18): 1311-1329, 2020 12.
Article in English | MEDLINE | ID: mdl-33243086

ABSTRACT

There is considerable variation in disease course among individuals infected with SARS-CoV-2. Many of them do not exhibit any symptoms, while some others proceed to develop COVID-19; however, severity of COVID-19 symptoms greatly differs among individuals. Focusing on the early events related to SARS-CoV-2 entry to cells through the ACE2 pathway, we describe how variability in (epi)genetic factors can conceivably explain variability in disease course. We specifically focus on variations in ACE2, TMPRSS2 and FURIN genes, as central components for SARS-CoV-2 infection, and on other molecules that modulate their expression such as CALM, ADAM-17, AR and ESRs. We propose a genetic classifier for predicting SARS-CoV-2 infectivity potential as a preliminary tool for identifying the at-risk-population. This tool can serve as a dynamic scaffold being updated and adapted to validated (epi)genetic data. Overall, the proposed approach holds potential for better personalization of COVID-19 handling.


Subject(s)
Angiotensin-Converting Enzyme 2/genetics , COVID-19/genetics , Furin/genetics , Serine Endopeptidases/genetics , ADAM17 Protein/genetics , COVID-19/epidemiology , COVID-19/virology , Epigenesis, Genetic/genetics , Humans , Monomeric Clathrin Assembly Proteins/genetics , Prognosis , Receptors, Androgen/genetics , Risk Factors , SARS-CoV-2/genetics , SARS-CoV-2/pathogenicity
17.
Aging (Albany NY) ; 12(21): 21202-21219, 2020 11 07.
Article in English | MEDLINE | ID: mdl-33170153

ABSTRACT

It is still unclear how PICALM mutations influence the risk of Alzheimer's disease (AD). We tested the association of AD risk variants on the PICALM gene with PICALM expression and AD feature endophenotypes. Bioinformatic methods were used to annotate the functionalities and to select the tag single nucleotide polymorphisms (SNPs). Multiple regressions were used to examine the cross-sectional and longitudinal influences of tag SNPs on cerebrospinal fluid (CSF) AD biomarkers and neurodegenerations. A total of 59 SNPs, among which 75% were reported in Caucasians, were associated with AD risk. Of these, 73% were linked to PICALM expression in the whole blood (p < 0.0001) and/or brain regions (p < 0.05). Eleven SNPs were selected as tag SNPs in Caucasians. rs510566 (T allele) was associated with decreased CSF ptau and ptau/abeta42 ratio. The G allele of rs1237999 and rs510566 was linked with greater reserve capacities of the hippocampus, parahippocampus, middle temporal lobe, posterior cingulate, and precuneus. The longitudinal analyses revealed four loci that could predict dynamic changes of CSF ptau and ptau/abeta42 ratio (rs10501610, p = 0.0001) or AD feature neurodegeneration (rs3851179, rs592297, and rs7480193, p < 0.005). Overall, the genetic, bioinformatic, and association studies tagged four SNPs (rs3851179, rs7480193, rs510566, and rs1237999) as the most prominent PICALM loci contributing to AD in Caucasians.


Subject(s)
Alzheimer Disease/genetics , Brain/pathology , Monomeric Clathrin Assembly Proteins/genetics , tau Proteins/cerebrospinal fluid , Aged , Aged, 80 and over , Cross-Sectional Studies , Female , Genetic Predisposition to Disease , Humans , Male , Middle Aged , Nerve Degeneration , Polymorphism, Single Nucleotide
18.
PLoS One ; 15(9): e0239196, 2020.
Article in English | MEDLINE | ID: mdl-32991610

ABSTRACT

The aim of the present study was to (1) investigate the relationship between late-onset Alzheimer's disease (AD) and DNA methylation levels in six of the top seven AD-associated genes identified through a meta-analysis of recent genome wide association studies, APOE, BIN1, PICALM, CR1, CLU, and ABCA7, in blood, and (2) examine its applicability to the diagnosis of AD. We examined methylation differences at CpG island shores in the six genes using Sanger sequencing, and one of two groups of 48 AD patients and 48 elderly controls was used for a test or replication analysis. We found that methylation levels in three out of the six genes, CR1, CLU, and PICALM, were significantly lower in AD subjects. The combination of CLU methylation levels and the APOE genotype classified AD patients with AUC = 0.84 and 0.80 in the test and replication analyses, respectively. Our study implicates methylation differences at the CpG island shores of AD-associated genes in the onset of AD and suggests their diagnostic value.


Subject(s)
Alzheimer Disease/genetics , Clusterin , CpG Islands , DNA Methylation , Monomeric Clathrin Assembly Proteins , Receptors, Complement 3b , Aged , Alzheimer Disease/diagnosis , Biomarkers/blood , Clusterin/blood , Clusterin/genetics , Female , Genetic Association Studies , Genetic Predisposition to Disease , Humans , Japan , Male , Middle Aged , Monomeric Clathrin Assembly Proteins/blood , Monomeric Clathrin Assembly Proteins/genetics , Receptors, Complement 3b/blood , Receptors, Complement 3b/genetics
19.
J Alzheimers Dis ; 78(1): 309-320, 2020.
Article in English | MEDLINE | ID: mdl-32986668

ABSTRACT

BACKGROUND: It is critical to identify individuals at risk for Alzheimer's disease (AD) earlier in the disease time course, such as middle age and preferably well prior to the onset of clinical symptoms, when intervention efforts may be more successful. Genome-wide association and candidate gene studies have identified single nucleotide polymorphisms (SNPs) in APOE, CLU, CR1, PICALM, and SORL1 that confer increased risk of AD. OBJECTIVE: In the current study, we investigated the associations between SNPs in these genes and resting-state functional connectivity within the default mode network (DMN), frontoparietal network (FPN), and executive control network (ECN) in healthy, non-demented middle-aged adults (age 40 -60; N = 123; 74 females). METHODS: Resting state networks of interest were identified through independent components analysis using a template-matching procedure and individual spatial maps and time courses were extracted using dual regression. RESULTS: Within the posterior DMN, functional connectivity was associated with CR1 rs1408077 and CLU rs9331888 polymorphisms (p's < 0.05). FPN connectivity was associated with CR1 rs1408077, CLU rs1136000, SORL1 rs641120, and SORL1 rs689021 (p's < 0.05). Functional connectivity within the ECN was associated with the CLU rs11136000 (p < 0.05). There were no APOE- or PICALM-related differences in any of the networks investigated (p's > 0.05). CONCLUSION: This is the first demonstration of the relationship between intrinsic network connectivity and AD risk alleles in CLU, CR1, and SORL1 in healthy, middle-aged adults. These SNPs should be considered in future investigations aimed at identifying potential preclinical biomarkers for AD.


Subject(s)
Alzheimer Disease/genetics , Neural Pathways/diagnostic imaging , Polymorphism, Single Nucleotide/genetics , Adult , Alleles , Apolipoproteins E/genetics , Clusterin/genetics , Executive Function , Female , Genetic Predisposition to Disease , Genome-Wide Association Study , Humans , LDL-Receptor Related Proteins/genetics , Magnetic Resonance Imaging , Male , Membrane Transport Proteins/genetics , Middle Aged , Monomeric Clathrin Assembly Proteins/genetics , Receptors, Complement 3b/genetics , Risk Factors
20.
Nat Commun ; 11(1): 4147, 2020 08 18.
Article in English | MEDLINE | ID: mdl-32811837

ABSTRACT

Mutated receptor tyrosine kinases (MT-RTKs) such as internal tandem duplication of FMS-like tyrosine kinase 3 (FLT3 ITD) and a point mutation KIT D816V are driver mutations for acute myeloid leukemia (AML). Clathrin assembly lymphoid myeloid leukemia protein (CALM) regulates intracellular transport of RTKs, however, the precise role for MT-RTKs remains elusive. We here show that CALM knock down leads to severely impaired FLT3 ITD- or KIT D814V-dependent cell growth compared to marginal influence on wild-type FLT3- or KIT-mediated cell growth. An antipsychotic drug chlorpromazine (CPZ) suppresses the growth of primary AML samples, and human CD34+CD38- AML cells including AML initiating cells with MT-RTKs in vitro and in vivo. Mechanistically, CPZ reduces CALM protein at post transcriptional level and perturbs the intracellular localization of MT-RTKs, thereby blocking their signaling. Our study presents a therapeutic strategy for AML with MT-RTKs by altering the intracellular localization of MT-RTKs using CPZ.


Subject(s)
Antineoplastic Agents/pharmacology , Cell Proliferation/drug effects , Chlorpromazine/pharmacology , Leukemia, Myeloid, Acute/genetics , Monomeric Clathrin Assembly Proteins/metabolism , Proto-Oncogene Proteins c-kit/genetics , fms-Like Tyrosine Kinase 3/genetics , fms-Like Tyrosine Kinase 3/metabolism , Adolescent , Adult , Aged , Aged, 80 and over , Animals , Apoptosis/drug effects , Apoptosis/genetics , Cell Proliferation/genetics , Cell Survival/drug effects , Cell Survival/genetics , Female , HL-60 Cells , Humans , Leukemia, Myeloid, Acute/metabolism , Male , Mice , Mice, Inbred BALB C , Mice, Nude , Middle Aged , Monomeric Clathrin Assembly Proteins/genetics , Point Mutation , Signal Transduction/drug effects , Tandem Repeat Sequences/genetics , Transplantation, Heterologous , Young Adult
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