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1.
Nanotechnology ; 35(28)2024 Apr 24.
Article in English | MEDLINE | ID: mdl-38574484

ABSTRACT

Nitrogen dioxide (NO2) is a major pollutant that poses significant risks to sustainable human life. As a result, a growing focus has been placed on the development of highly selective and sensitive gas sensors for NO2. Traditional cutting-edge non-organic NO2gas detectors often necessitate stringent production conditions and potentially harmful materials, which are not environmentally friendly, and these shortcomings have limited their widespread practical use. To overcome these challenges, we synthesized self-assembled peptide nanotubes (SPNTs) through a molecular self-assembly process. The SPNTs were then combined with SnO2in varying proportions to construct NO2gas sensors. The design of this sensor ensured efficient electron transfer and leverage the extensive surface area of the SPNTs for enhanced gas adsorption and the effective dispersion of SnO2nanoparticles. Notably, the performance of the sensor, including its sensitivity, response time, and recovery rate, along with a lower detection threshold, could be finely tuned by varying the SPNTs content. This approach illustrated the potential of bioinspired methodologies, using peptide self-assemblies, to develop integrated sensors for pollutant detection, providing a significant development in environmentally conscious sensor technology.


Subject(s)
Nanocomposites , Nanotubes, Peptide , Nitrogen Dioxide , Tin Compounds , Tin Compounds/chemistry , Nitrogen Dioxide/analysis , Nanotubes, Peptide/chemistry , Nanocomposites/chemistry , Temperature
2.
J Control Release ; 369: 531-544, 2024 May.
Article in English | MEDLINE | ID: mdl-38580138

ABSTRACT

Stimulator of the interferon genes (STING) pathway is appealing but challenging to potentiate the innate anti-tumor immunity. In this work, nuclear-targeted chimeric peptide nanorods (designated as PFPD) are constructed to amplify innate immunity through localized DNA damage and STING activation. Among which, the chimeric peptide (PpIX-FFVLKPKKKRKV) is fabricated with photosensitizer and nucleus targeting peptide sequence, which can self-assemble into nanorods and load STING agonist of DMXAA. The uniform nanosize distribution and good stability of PFPD improve the sequential targeting delivery of drugs towards tumor cells and nuclei. Under light irradiation, PFPD produce a large amount of reactive oxygen species (ROS) to destroy nuclear DNA in situ, and the released cytosolic DNA fragment will efficiently activate innate anti-tumor immunity in combination with STING agonist. In vitro and in vivo results indicate the superior ability of PFPD to activate natural killer cells and T cells, thus efficiently eradicating lung metastatic tumor without inducing unwanted side effects. This work provides a sophisticated strategy for localized activation of innate immunity for systemic tumor treatment, which may inspire the rational design of nanomedicine for tumor precision therapy.


Subject(s)
DNA Damage , Immunity, Innate , Membrane Proteins , Animals , Immunity, Innate/drug effects , Humans , Photosensitizing Agents/administration & dosage , Photosensitizing Agents/pharmacology , Cell Nucleus/metabolism , Mice, Inbred BALB C , Cell Line, Tumor , Nanotubes, Peptide/chemistry , Reactive Oxygen Species/metabolism , Lung Neoplasms/immunology , Lung Neoplasms/therapy , Lung Neoplasms/drug therapy , Female , Mice , Neoplasms/immunology , Neoplasms/therapy , Neoplasms/drug therapy , Antineoplastic Agents/administration & dosage , Antineoplastic Agents/pharmacology , Killer Cells, Natural/immunology , Killer Cells, Natural/drug effects , Peptides/administration & dosage , Peptides/chemistry
3.
ACS Appl Mater Interfaces ; 16(8): 9787-9798, 2024 Feb 28.
Article in English | MEDLINE | ID: mdl-38350068

ABSTRACT

The controlled peptide self-assembly and disassembly are not only implicated in many cellular processes but also possess huge application potential in a wide range of biotechnology and biomedicine. ß-sheet peptide assemblies possess high kinetic stability, so it is usually hard to disassemble them rapidly. Here, we reported that both the self-assembly and disassembly of a designed short ß-sheet peptide IIIGGHK could be well harnessed through the variations of concentration, pH, and mechanical stirring. Microscopic imaging, neutron scattering, and infrared spectroscopy were used to track the assembly and disassembly processes upon these stimuli, especially the interconversion between thin, left-handed protofibrils and higher-order nanotubes with superstructural right-handedness. The underlying rationale for these controlled disassembly processes mainly lies in the fact that the specific His-His interactions between protofibrils were responsive to these stimuli. By taking advantage of the peptide self-assembly and disassembly, the encapsulation of the hydrophobic drug curcumin and its rapid release upon stimuli were achieved. Additionally, the peptide hydrogels facilitated the differentiation of neural cells while maintaining low cell cytotoxicity. We believe that such dynamic and reversible structural transformation in this work provides a distinctive paradigm for controlling the peptide self-assembly and disassembly, thus laying a foundation for practical applications of peptide assemblies.


Subject(s)
Nanotubes, Peptide , Nanotubes , Nanotubes, Peptide/chemistry , Peptides/pharmacology , Peptides/chemistry , Protein Conformation, beta-Strand
4.
J Phys Chem B ; 127(27): 6061-6072, 2023 07 13.
Article in English | MEDLINE | ID: mdl-37369069

ABSTRACT

The effect of the protonation state of glutamic acid on its translocation through cyclic peptide nanotubes (CPNs) was assessed by using molecular dynamics (MD) simulations. Anionic (GLU-), neutral zwitterionic (GLU0), and cationic (GLU+) forms of glutamic acid were selected as three different protonation states for an analysis of energetics and diffusivity for acid transport across a cyclic decapeptide nanotube. Based on the solubility-diffusion model, permeability coefficients for the three protonation states of the acid were calculated and compared with experimental results for CPN-mediated glutamate transport through CPNs. Potential of mean force (PMF) calculations reveal that, due to the cation-selective nature of the lumen of CPNs, GLU-, so-called glutamate, shows significantly high free energy barriers, while GLU+ displays deep energy wells and GLU0 has mild free energy barriers and wells inside the CPN. The considerable energy barriers for GLU- inside CPNs are mainly attributed to unfavorable interactions with DMPC bilayers and CPNs and are reduced by favorable interactions with channel water molecules through attractive electrostatic interactions and hydrogen bonding. Unlike the distinct PMF curves, position-dependent diffusion coefficient profiles exhibit comparable frictional behaviors regardless of the charge status of three protonation states due to similar confined environments imposed by the lumen of the CPN. The calculated permeability coefficients for the three protonation states clearly demonstrate that glutamic acid has a strong protonation state dependence for its transport through CPNs, as determined by the energetics rather than the diffusivity of the protonation state. In addition, the permeability coefficients also imply that GLU- is unlikely to pass through a CPN due to the high energy barriers inside the CPN, which is in disagreement with experimental measurements, where a considerable amount of glutamate permeating through the CPN was detected. To resolve the discrepancy between this work and the experimental observations, several possibilities are proposed, including a large concentration gradient of glutamate between the inside and outside of lipid vesicles and bilayers in the experiments, the glutamate activity difference between our MD simulations and experiments, an overestimation of energy barriers due to the artifacts imposed in MD simulations, and/or finally a transformation of the protonation state from GLU- to GLU0 to reduce the energy barriers. Overall, our study demonstrates that the protonation state of glutamic acid has a strong effect on the transport of the acid and suggests a possible protonation state change for glutamate permeating through CPNs.


Subject(s)
Nanotubes, Peptide , Nanotubes , Nanotubes, Peptide/chemistry , Peptides, Cyclic/chemistry , Molecular Dynamics Simulation , Glutamic Acid , Nanotubes/chemistry
5.
J Mater Chem B ; 11(15): 3445-3452, 2023 04 12.
Article in English | MEDLINE | ID: mdl-37006184

ABSTRACT

Self-assembled peptide nanomaterials exhibit great potential for applications in materials science, energy storage, nanodevices, analytical science, biomedicine, tissue engineering, and others due to their tailorable ordered nanostructures and unique physical, chemical, and biological properties. Although one-dimensional peptide nanofibers and nanotubes have been widely used for biomedical applications, the design and synthesis of two-dimensional (2D) peptide nanostructures for cancer therapy remain challenging. In this work, we describe the creation of 2D biocompatible peptide nanosheets (PNSs) through molecular self-assembly, which can provide support matrixes for conjugating gold nanorods (AuNRs) to form high-performance 2D nanomaterials for photothermal conversion. After molecular modification, AuNRs can be chemically conjugated onto the surface of 2D PNSs, and the created PNS-AuNR nanohybrids serve as a potential nanoplatform for photothermal therapy of tumor cells. The obtained results indicate that both PNSs and AuNRs contribute to the improved efficiency of photothermal therapy (PTT) of tumors, in which 2D PNSs provide high biocompatibility and a large surface area for binding AuNRs, and AuNRs show a high PTT ability towards tumors. The strategies of molecular design and functional tailoring of self-assembled peptide nanomaterials shown in this study are valuable and inspire the synthesis of biomimetic nanomaterials for biomedicine and tissue engineering applications.


Subject(s)
Gold , Metal Nanoparticles , Nanotubes, Peptide , Neoplasms , Photothermal Therapy , Humans , Gold/chemistry , Metal Nanoparticles/chemistry , Nanotubes/chemistry , Nanotubes, Peptide/chemistry , Neoplasms/therapy , Peptides/chemistry , Phototherapy/methods , Photothermal Therapy/methods
6.
ACS Appl Mater Interfaces ; 14(34): 38778-38785, 2022 Aug 31.
Article in English | MEDLINE | ID: mdl-35983899

ABSTRACT

Diphenylalanine (FF) is a piezoelectric material that is widely known for its high piezoelectric constant, self-assembly characteristics, and ease of manufacture. Because of its biocompatible nature, it is useful for implantable applications. However, its use in real applications is challenging because it degrades too easily in the body due to its solubility in water (0.76 g/mL). Upon incorporation of hydrophobic and biocompatible porphyrins into the FF, the degradability of the piezoelectric FF and their piezoelectric nanogenerators (PENGs) is controlled. Porphyrin-incorporated FFs are also formed as piezoelectric nanostructures well aligned on the substrate through self-assembly, and their piezoelectric properties are comparable to those of FF. The FF-based PENG degrades in only 5 min, whereas the FF-porphyrin-based PENG produces a stable output for >15 min in phosphate-buffered saline. This strategy for realizing biodegradable functional materials and devices with tunable degradation rates in the body can be applied to many implantable electronics.


Subject(s)
Nanotubes, Peptide , Porphyrins , Dipeptides , Nanotubes, Peptide/chemistry , Phenylalanine/chemistry
7.
Biomacromolecules ; 23(6): 2315-2328, 2022 06 13.
Article in English | MEDLINE | ID: mdl-35582852

ABSTRACT

Rod-shaped nanoparticles have been identified as promising drug delivery candidates. In this report, the in vitro cell uptake and in vivo pharmacokinetic/bio-distribution behavior of molecular bottle-brush (BB) and cyclic peptide self-assembled nanotubes were studied in the size range of 36-41 nm in length. It was found that BB possessed the longest plasma circulation time (t1\2 > 35 h), with the cyclic peptide system displaying an intermediate half-life (14.6 h), although still substantially elevated over a non-assembling linear control (2.7 h). The covalently bound BB underwent substantial distribution into the liver, whereas the cyclic peptide nanotube was able to mostly circumvent organ accumulation, highlighting the advantage of the inherent degradability of the cyclic peptide systems through their reversible aggregation of hydrogen bonding core units.


Subject(s)
Nanoparticles , Nanotubes, Peptide , Nanotubes , Nanoparticles/chemistry , Nanotubes/chemistry , Nanotubes, Peptide/chemistry , Peptides, Cyclic/chemistry , Polymers/chemistry
8.
J Mol Model ; 28(4): 81, 2022 Mar 05.
Article in English | MEDLINE | ID: mdl-35247081

ABSTRACT

The work is devoted to computer studies of the structural and physical properties of such self-organizing structures as peptide nanotubes (PNT) based on diphenylalanine (FF) dipeptide with different initial isomers of the left (L-FF) and right (D-FF) chiralities of these dipeptides. The structures under study are considered both with empty anhydrous and with internal cavities filled with water molecules. Molecular models of both chiralities are investigated using quantum-chemical DFT and semi-empirical methods, which are in consistent with the known experimental data. To study the effect of nano-sized clusters of water molecules embedded in the inner hydrophilic cavity on the properties of nanotubes (including the changes in their dipole moments and polarizations), as well as the changes in the structure and properties of water clusters themselves (their own dipole moments and polarizations), the surfaces of internal cavities of nanotubes and outer surfaces of water cluster structures for both types of chirality are analyzed. A specially developed method of visual differential analysis of structural features of (bio)macromolecular structures is applied for these studies. The results obtained of a number of physical properties (interacting energies, dipole moments, polarization values) are given for various cases and analyzed in comparison with the known data. These data are necessary for analyzing the interactions of water molecules with hydrophilic parts of nanotube molecules based on FF, such as COO- and NH3 + , since they determine many properties of the structures under study. The data obtained are useful for further analysis of the possible adhesion and capture of medical molecular components by active layers of FF-based PNT, which can be designed for creating capsules for targeted delivery of pharmaceuticals and drugs on their basis.


Subject(s)
Nanotubes, Peptide , Nanotubes , Dipeptides , Models, Molecular , Nanotubes/chemistry , Nanotubes, Peptide/chemistry , Phenylalanine/chemistry
9.
Anal Bioanal Chem ; 414(2): 1115-1128, 2022 Jan.
Article in English | MEDLINE | ID: mdl-34738221

ABSTRACT

In the present study, a peptide nanotube functionalized polydopamine (p-Dop) based molecularly imprinted (MIP) sensor system was constructed, characterized, and studied for the impedimetric sensing of an organophosphorus pesticide, malathion (MLT). Electropolymerization in the presence of a template (MLT) was utilized as a convenient and effective strategy to generate imprinted p-Dop films on peptide nanotubes (PNTs) modified graphite electrodes (PGEs). Upon the removal of template, the adsorption of MLT on the specific cavities formed in the MIP film was tracked using electrochemical impedance spectroscopy (EIS). To attain optimal sensor response, experimental conditions, such as film thickness, analyte/functional monomer ratio, and desorption/adsorption time, were analyzed. The obtained MIP(p-Dop)-PNT-PGE sensor exhibited high sensitivity for electrochemical MLT analysis with a wide dynamic detection range of 13 pg mL-1 - 1.3 µg mL-1 and a LOD of 1.39 pg mL-1. The combination of a bio-inspired p-Dop-based MIP with the EIS technique allowed excellent sensitivity and selectivity toward MLT sensing which also yielded high recoveries in real samples. The success of this research strategy in real samples revealed its potential for various future environmental applications.


Subject(s)
Indoles/chemistry , Insecticides/analysis , Malathion/analysis , Molecular Imprinting/methods , Nanotubes, Peptide/chemistry , Polymers/chemistry , Limit of Detection
10.
Mol Pharm ; 18(7): 2556-2573, 2021 07 05.
Article in English | MEDLINE | ID: mdl-34110176

ABSTRACT

Cyclo-(D-Trp-Tyr) peptide nanotubes (PNTs) were reported to be potential carriers for oral gene delivery in our previous study; however, the effect of the aspect ratio (AR) of these PNTs on gene delivery in vivo could affect penetration or interception in biological environments. The aim of this study was to assess the feasibility of cyclo-(D-Trp-Tyr) PNTs with two ARs as carriers for oral pMBP-bcl-xL-hRluc delivery to the spinal cord to treat spinal cord injury (SCI). We evaluated the biodistribution of oligodendrocyte (OLG)-specific myelin basic protein gene promoter-driven antiapoptotic DNA (pMBP-bcl-xL) to the brain and spinal cord delivered with cyclo-(D-Trp-Tyr) PNTs with large (L) and small (S) PNTs with two ARs. After complex formation, the length, width, and AR of the L-PNTs/DNA were 77.86 ± 3.30, 6.51 ± 0.28, and 13.75 ± 7.29 µm, respectively, and the length and width of the S-PNTs/DNA were 1.17 ± 0.52 and 0.17 ± 0.05 µm, respectively, giving an AR of 7.12 ± 3.17 as detected by scanning electron microscopy. Each of these three parameters exhibited significant differences (p < 0.05) between L-PNTs/DNA and S-PNTs/DNA. However, there were no significant differences (p > 0.05) between the L-PNTs and S-PNTs for either their DNA encapsulation efficiency (29.72 ± 14.19 and 34.31 ± 16.78%, respectively) or loading efficiency (5.15 ± 2.58 and 5.95 ± 2.91%). The results of the in vitro analysis showed that the S-PNT/DNA complexes had a significantly higher DNA release rate and DNA permeation in the duodenum than the L-PNT/DNA complexes. Using Cy5 and TM-rhodamine to individually and chemically conjugate the PNTs with plasmid DNA, we observed, using laser confocal microscopy, that the PNTs and DNA colocalized in complexes. We further confirmed the complexation between DNA and the PNTs using fluorescence resonance energy transfer (FRET). Data from an in vivo imaging system (IVIS) showed that there was no significant difference (p > 0.05) in PNT distribution between L-PNTs/DNA and S-PNTs/DNA within 4 h. However, the S-PNT/DNA group had a significantly higher DNA distribution (p < 0.05) in several organs, including the ilium, heart, lungs, spleen, kidneys, testes, brain, and spinal cord. Finally, we determined the bcl-xL protein expression levels in the brain and spinal cord regions for the L-PNT/DNA and S-PNT/DNA complex formulations. These results suggested that either L-PNTs or S-PNTs may be used as potential carriers for oral gene delivery to treat SCI.


Subject(s)
Brain/metabolism , DNA/pharmacokinetics , Myelin Basic Protein/genetics , Myelin Basic Protein/metabolism , Nanotubes, Peptide/chemistry , Peptides, Cyclic/chemistry , Spinal Cord/metabolism , bcl-X Protein/metabolism , Administration, Oral , Animals , DNA/administration & dosage , DNA/genetics , Male , Mice , Mice, Inbred BALB C , Promoter Regions, Genetic , Tissue Distribution , bcl-X Protein/administration & dosage , bcl-X Protein/genetics
11.
Proc Natl Acad Sci U S A ; 118(19)2021 05 11.
Article in English | MEDLINE | ID: mdl-33941681

ABSTRACT

To realize RNA interference (RNAi) therapeutics, it is necessary to deliver therapeutic RNAs (such as small interfering RNA or siRNA) into cell cytoplasm. A major challenge of RNAi therapeutics is the endosomal entrapment of the delivered siRNA. In this study, we developed a family of delivery vehicles called Janus base nanopieces (NPs). They are rod-shaped nanoparticles formed by bundles of Janus base nanotubes (JBNTs) with RNA cargoes incorporated inside via charge interactions. JBNTs are formed by noncovalent interactions of small molecules consisting of a base component mimicking DNA bases and an amino acid side chain. NPs presented many advantages over conventional delivery materials. NPs efficiently entered cells via macropinocytosis similar to lipid nanoparticles while presenting much better endosomal escape ability than lipid nanoparticles; NPs escaped from endosomes via a "proton sponge" effect similar to cationic polymers while presenting significant lower cytotoxicity compared to polymers and lipids due to their noncovalent structures and DNA-mimicking chemistry. In a proof-of-concept experiment, we have shown that NPs are promising candidates for antiviral delivery applications, which may be used for conditions such as COVID-19 in the future.


Subject(s)
DNA/chemistry , Drug Delivery Systems , Endosomes/metabolism , Nanostructures/administration & dosage , Amino Acids/chemistry , Cell Survival , Endocytosis , Humans , Nanostructures/chemistry , Nanotubes, Peptide/chemistry , RNA, Small Interfering/administration & dosage , RNA, Small Interfering/chemistry , RNA, Small Interfering/metabolism , RNAi Therapeutics
12.
Nat Commun ; 12(1): 407, 2021 01 18.
Article in English | MEDLINE | ID: mdl-33462223

ABSTRACT

The exquisite structure-function correlations observed in filamentous protein assemblies provide a paradigm for the design of synthetic peptide-based nanomaterials. However, the plasticity of quaternary structure in sequence-space and the lability of helical symmetry present significant challenges to the de novo design and structural analysis of such filaments. Here, we describe a rational approach to design self-assembling peptide nanotubes based on controlling lateral interactions between protofilaments having an unusual cross-α supramolecular architecture. Near-atomic resolution cryo-EM structural analysis of seven designed nanotubes provides insight into the designability of interfaces within these synthetic peptide assemblies and identifies a non-native structural interaction based on a pair of arginine residues. This arginine clasp motif can robustly mediate cohesive interactions between protofilaments within the cross-α nanotubes. The structure of the resultant assemblies can be controlled through the sequence and length of the peptide subunits, which generates synthetic peptide filaments of similar dimensions to flagella and pili.


Subject(s)
Nanotubes, Peptide/ultrastructure , Arginine/chemistry , Arginine/genetics , Cryoelectron Microscopy , Models, Molecular , Nanotubes, Peptide/chemistry , Protein Conformation, alpha-Helical , Structure-Activity Relationship
13.
Chemistry ; 27(9): 3029-3038, 2021 Feb 10.
Article in English | MEDLINE | ID: mdl-32986280

ABSTRACT

A new class of amphipathic cyclic peptides, which assemble in bacteria membranes to form polymeric supramolecular nanotubes giving them antimicrobial properties, is described. The method is based on the use of two orthogonal clickable transformations to incorporate different hydrophobic or hydrophilic moieties in a simple, regioselective, and divergent manner. The resulting cationic amphipathic cyclic peptides described in this article exhibit strong antimicrobial properties with a broad therapeutic window. Our studies suggest that the active form is the nanotube resulted from the parallel stacking of the cyclic peptide precursors. Several techniques, CD, FTIR, fluorescence, and STEM, among others, confirm the nanotube formation.


Subject(s)
Anti-Infective Agents/chemical synthesis , Click Chemistry , Nanotubes, Peptide/chemistry , Peptides, Cyclic/chemical synthesis , Peptides, Cyclic/chemistry
14.
J Mol Model ; 26(11): 326, 2020 Nov 02.
Article in English | MEDLINE | ID: mdl-33140163

ABSTRACT

DFT (VASP) and semi-empirical (HyperChem) calculations for the L- and D-chiral diphenylalanine (L-FF and D-FF) nanotube (PNT) structures, empty and filled with water/ice clusters, are presented and analyzed. The results obtained show that after optimization, the dipole moment and polarization of both chiral type L-FF and D-FF PNT and embedded water/ice cluster are enhanced; the water/ice cluster acquire the helix-like structure similar as L-FF and D-FF PNT. Ferroelectric properties of tubular water/ice helix-like-cluster obtained after optimization inside L-FF and D-FF PNT and total L-FF and D-FF PNT with embedded water/ice cluster are discussed.


Subject(s)
Computer Simulation , Models, Molecular , Nanotubes, Peptide/chemistry , Water/chemistry , Hydrophobic and Hydrophilic Interactions , Phenylalanine/chemistry , Thermodynamics
15.
Chem Commun (Camb) ; 56(80): 11977-11980, 2020 Oct 14.
Article in English | MEDLINE | ID: mdl-33033814

ABSTRACT

The designed arginine-rich surfactant-like peptide R3L12 (arginine3-leucine12) is shown to form a remarkable diversity of self-assembled nanostructures in aqueous solution, depending on pH, including nanotubes, mesh-like tubular networks in three-dimensions and square planar arrays in two-dimensions. These structures are built from α-helical antiparallel coiled-coil peptide dimers arranged perpendicular to the nanotube axis, in a "cross-α" nanotube structure. The aggregation behavior is rationalized based on the effects of dimensionality, and the balance of hydrophobic and electrostatic interactions. The nanotube and nanomesh structures display arginine at high density on their surfaces, which may be valuable for future applications.


Subject(s)
Leucine/chemistry , Nanostructures/chemistry , Nanotubes, Peptide/chemistry , Surface-Active Agents/chemistry , Amino Acid Sequence , Arginine/chemistry , Models, Molecular , Protein Conformation, alpha-Helical , Protein Multimerization , Water
16.
ACS Appl Mater Interfaces ; 12(24): 27485-27492, 2020 Jun 17.
Article in English | MEDLINE | ID: mdl-32463652

ABSTRACT

Nanotubes of self-assembled dipeptides exemplified by diphenylalanine (FF) demonstrate a wide range of useful functional properties, such as high Young's moduli, strong photoluminescence, remarkable piezoelectricity and pyroelectricity, optical waveguiding, etc., and became the object of intensive research due to their ability to combine electronic and biological functions in the same material. Two types of nanoconfined water molecules (bound water directly interacting with the peptide backbone and free water located inside nanochannels) are known to play a key role in the self-assembly of FF. Bound water provides its structural integrity, whereas movable free water influences its functional response. However, the intrinsic mechanism of water motion in FF nanotubes remained elusive. In this work, we study the sorption properties of FF nanotubes directly considering them as a microporous material and analyze the free water self-diffusion at different temperatures. We found a change in the regime of free water diffusion, which is attributed to water cluster size in the nanochannels. Small clusters of less than five molecules per unit cell exhibit ballistic diffusion, whereas, for larger clusters, Fickian diffusion occurs. External conditions of around 40% relative humidity at 30 °C enable the formation of such large clusters, for which the diffusion coefficient reaches 1.3 × 10-10 m2 s-1 with an activation energy of 20 kJ mol-1, which increases to attain 3 × 10-10 m2 s-1 at 65 °C. The observed peculiarities of water self-diffusion along the narrow FF nanochannels endow this class of materials with a new functionality. Possible applications of FF nanotubes in nanofluidic devices are discussed.


Subject(s)
Nanotubes, Peptide/chemistry , Peptides/chemistry , Phenylalanine/chemistry
17.
J Biomol Struct Dyn ; 38(1): 186-199, 2020 01.
Article in English | MEDLINE | ID: mdl-30678549

ABSTRACT

The structural stability and transport properties of the cyclic peptide nanotube (CPN) 8 × [Cys-Gly-Met-Gly]2 in different phospholipid bilayers such as POPA (1-palmitoyl-2-oleoyl-sn-glycero-3-phosphatidic acid), POPE (1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine), POPC (1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine), POPG (1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol) and POPS (1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoserine) with water have been investigated using molecular dynamics (MD) simulation. The hydrogen bonds and non-bonded interaction energies were calculated to study the stability in different bilayers. One µs MD simulation in POPA lipid membrane reveals the stability of the cyclic peptide nanotube, and the simulations at various temperatures manifest the higher stability of 8 × [Cys-Gly-Met-Gly]2. We demonstrated that the presence of sulphur-containing amino acids in CPN enhances the stability through disulphide bonds between the adjacent rings. Further, the water permeation coefficient of the CPN is calculated and compared with human aquaporin-2 (AQP2) channel protein. It is found that the coefficients are highly comparable to the AQP2 channel though the mechanism of water transport is not similar to AQP 2; the flow of water in the CPN is taking place as a two-line 1-2-1-2 file fashion. In addition to that, the transport behavior of Na+ and K+ ions, single water molecule, urea and anti-cancer drug fluorouracil were investigated using pulling simulation and potential of mean force calculation. The above transport behavior shows that Na+ is trapped in CPN for a longer time than other molecules. Also, the interactions of the ions and molecules in Cα and mid-Cα plane were studied to understand the transport behavior of the CPN. AbbreviationsAQP2Aquaporin-2CPNCyclic peptide nanotubeMDMolecular dynamicsPOPA1-Palmitoyl-2-oleoyl-sn-glycero-3-phosphatidic acidPOPE1-Palmitoyl-2-oleoyl-sn-glycero-3-phosphoethanolaminePOPG1-Palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerolPOPS1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoserineCommunicated by Ramaswamy H. Sarma.


Subject(s)
Aquaporins/chemistry , Nanotubes, Peptide/chemistry , Peptides, Cyclic/chemistry , Aquaporins/metabolism , Humans , Lipid Bilayers/chemistry , Peptides, Cyclic/metabolism , Permeability , Protein Stability , Protein Transport , Water/chemistry
18.
J Phys Chem B ; 123(46): 9882-9888, 2019 11 21.
Article in English | MEDLINE | ID: mdl-31682119

ABSTRACT

Design flexibility and modularity have emerged as powerful tools in the development of functional self-assembled peptide nanostructures. In particular, the tendency of peptides to form fibrils and nanotubes has motivated the investigation of electron and, more recently, proton transport in their fibrous films. In this study, we present a detailed characterization by impedance spectroscopy of films of self-assembled cyclic octa-d,l-α-peptide self-assembled nanotubes with amine side chains that promote proton transport. We show that the conductivity of the peptide nanotube film, which is in the range of 0.3 mS cm-1, is within the same order of magnitude as that of ultrathin films of Nafion, a benchmark proton conducting polymer. In addition, we show that while slow diffusion processes at the interface are present for both films, additional interface effects occur in the peptide nanotube films at the same rate as their bulk proton transport effects, further limiting charge transport at the interface. Overall, our studies demonstrate the great potential of using peptides as building blocks for the preparation of bioinspired supramolecular proton conducting polymers with improved conductivity with respect to that of natural systems.


Subject(s)
Nanotubes, Peptide/chemistry , Peptides, Cyclic/chemistry , Dielectric Spectroscopy , Electric Conductivity , Fluorocarbon Polymers/chemistry , Microscopy, Atomic Force , Protons
19.
Nat Commun ; 10(1): 4708, 2019 10 17.
Article in English | MEDLINE | ID: mdl-31624265

ABSTRACT

Self-assembling peptides have the ability to spontaneously aggregate into large ordered structures. The reversibility of the peptide hydrogen bonded supramolecular assembly make them tunable to a host of different applications, although it leaves them highly dynamic and prone to disassembly at the low concentration needed for biological applications. Here we demonstrate that a secondary hydrophobic interaction, near the peptide core, can stabilise the highly dynamic peptide bonds, without losing the vital solubility of the systems in aqueous conditions. This hierarchical self-assembly process can be used to stabilise a range of different ß-sheet hydrogen bonded architectures.


Subject(s)
Macromolecular Substances/chemistry , Nanotubes, Peptide/chemistry , Peptides/chemistry , Protein Conformation, beta-Strand , Water/chemistry , Cell Survival , Humans , Hydrogen Bonding , Hydrophobic and Hydrophilic Interactions , PC-3 Cells , Solubility , Thermodynamics
20.
Small ; 15(49): e1904397, 2019 12.
Article in English | MEDLINE | ID: mdl-31639274

ABSTRACT

1D peptide nanostructures (i.e., peptide nanotubes, PNTs) exhibit tunable chemo-physical properties and functions such as improved tissue adhesion, increased cellular uptake, and elongated blood circulation. In this study, the application of PNTs as a desirable 1D template for biomineralization of Cu2-x S nanoparticles (Cu2-x S NPs, x = 1-2) is reported. Monodisperse Cu2-x S NPs are uniformly coated on the peptide nanotubes owing to the specific high binding affinity of Cu ions to the imidazole groups exposed on the surface of nanotubes. The Cu2-x S NP-coated PNTs are further covalently grafted with an oxaliplatin prodrug (Pt-CuS-PNTs) to construct a versatile nanoplatform for combination cancer therapy. Upon 808 nm laser illumination, the nanoplatform induces significant hyperthermia effect and elicits reactive oxygen species generation through electron transfer and Fenton-like reaction. It is demonstrated that the versatile nanoplatform dramatically inhibits tumor growth and lung metastasis of melanoma in a B16-F10 melanoma tumor-bearing mouse model by combined photo- and chemotherapy. This study highlights the ability of PNTs for biomineralization of metal ions and the promising potential of such nanoplatforms for cancer treatment.


Subject(s)
Metal Nanoparticles/chemistry , Nanoparticles/chemistry , Nanotubes, Peptide/chemistry , Nanotubes/chemistry , Animals , Biomineralization/physiology , Combined Modality Therapy , Female , Melanoma/metabolism , Melanoma, Experimental/metabolism , Mice , Mice, Inbred C57BL
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