Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 387
Filter
1.
J Exp Biol ; 227(8)2024 Apr 15.
Article in English | MEDLINE | ID: mdl-38563292

ABSTRACT

Concentrations of dissolved nitrogen in seawater can affect the resilience of the cnidarian-dinoflagellate symbiosis to climate change-induced bleaching. However, it is not yet known how the assimilation and translocation of the various nitrogen forms change during heat stress, nor how the symbiosis responds to nutrient depletion, which may occur due to increasing water stratification. Here, the tropical scleractinian coral Stylophora pistillata, in symbiosis with dinoflagellates of the genus Symbiodinium, was grown at different temperatures (26°C, 30°C and 34°C), before being placed in nutrient-replete or -depleted seawater for 24 h. The corals were then incubated with 13C-labelled sodium bicarbonate and different 15N-labelled nitrogen forms (ammonium, urea and dissolved free amino acids) to determine their assimilation rates. We found that nutrient depletion inhibited the assimilation of all nitrogen sources studied and that heat stress reduced the assimilation of ammonium and dissolved free amino acids. However, the host assimilated over 3-fold more urea at 30°C relative to 26°C. Overall, both moderate heat stress (30°C) and nutrient depletion individually decreased the total nitrogen assimilated by the symbiont by 66%, and combined, they decreased assimilation by 79%. This led to the symbiotic algae becoming nitrogen starved, with the C:N ratio increasing by over 3-fold at 34°C, potentially exacerbating the impacts of coral bleaching.


Subject(s)
Anthozoa , Dinoflagellida , Heat-Shock Response , Symbiosis , Anthozoa/physiology , Anthozoa/metabolism , Animals , Dinoflagellida/physiology , Dinoflagellida/metabolism , Heat-Shock Response/physiology , Nutrients/metabolism , Nitrogen/metabolism , Nitrogen Compounds/metabolism , Seawater/chemistry , Hot Temperature , Amino Acids/metabolism
2.
J Dairy Sci ; 106(12): 8583-8610, 2023 Dec.
Article in English | MEDLINE | ID: mdl-37683889

ABSTRACT

Adequate prediction of postruminal outflow of protein fractions is the starting point for the determination of metabolizable protein supply in dairy cows. The objective of this meta-analysis was to compare the performance of 3 dairy feed evaluation systems (National Research Council [NRC], Cornell Net Protein and Carbohydrate System [CNCPS], and National Academies of Sciences, Engineering and Medicine [NASEM]) to predict outflows (g/d) of nonammonia nitrogren (NAN), microbial N (MiN), and nonammonia nonmicrobial N (NANMN). Predictions of rumen degradabilities (% of nutrient) of protein (RDP), NDF, and starch were also evaluated. The data set included 1,294 treatment means from 312 digesta flow studies. The 3 feed evaluation systems were compared using the concordance correlation coefficient (CCC), the ratio of root mean square prediction error (RMSPE) on standard deviation of observed values (RSR), and the slope between observed and predicted values. Mean and linear biases were deemed biologically relevant and are discussed if higher than a threshold of 5% of the mean of observed values. The comparisons were done on observed values adjusted or not for the study effect; the adjustment had a small effect on the mean bias but the linear bias reflected a response to a dietary change rather than absolute predictions. For the absolute predictions of NAN and MiN, CNCPS had the best-fit statistics (8% greater CCC; 6% lower RMSPE) without any bias; NRC and NASEM underpredicted NAN and MiN, and NASEM had an additional linear bias indicating that the underprediction of MiN increased at increased predictions. For NANMN, fit statistics were similar among the 3 feed evaluation systems with no mean bias; however, the linear bias with NRC and CNCPS indicated underprediction at low predictions and overprediction at elevated predictions. On average, the CCC were smaller and RSR ratios were greater for MiN versus NAN indicating increased prediction errors for MiN. For NAN responses to a dietary change, CNCPS also had the best predictions, although the mean bias with NASEM was not biologically relevant and the 3 feed evaluation systems did not present a linear bias. However, CNCPS, but not the 2 other feed evaluation systems, presented a linear bias for MiN, with responses being overpredicted at increased predictions. For NANMN, responses were overpredicted at increased predictions for the 3 feed evaluation systems, but to a lesser extent with NASEM. The site of sampling had an effect on the mean bias of MiN and NANMN in the 3 feed evaluation systems. The mean bias of MiN was higher in omasal than duodenal studies in the 3 feed evaluation systems (from 55 to 61 g/d) and this mean bias was twice as large when 15N labeling was used as a microbial marker compared with purines. Such a difference was not observed for duodenal studies. The reasons underlying these systematic differences are not clear as the type of measurements used in the current meta-analysis does not allow to delineate if one site or one microbial marker is yielding the "true" postruminal N outflows. Rumen degradabilities of protein was underpredicted with CNCPS, and RDP responses to a dietary change was underpredicted by the 3 feed evaluation systems with increased RDP predictions. Rumen degradability of NDF was underpredicted and had poor fit statistics for NASEM compared with CNCPS. Fit statistics were similar between CNCPS and NASEM for rumen degradability of starch, but with an underprediction of the response with NASEM and absolute values being overpredicted with CNCPS. Multivariate regression analyses showed that diet characteristics were correlated with prediction errors of N outflows in each feed evaluation system. Globally, compared with NAN and NANMN, residuals of MiN were correlated with several moderators in the 3 feed evaluation systems reflecting the complexity to measure and model this outflow. In addition, residuals of NANMN were correlated positively with RDP suggesting an overestimation of this parameter. In conclusion, although progress is still to be made to improve equations predicting postruminal N outflows, the current feed evaluation systems provide sufficient precision and accuracy to predict postruminal outflows of N fractions.


Subject(s)
Animal Feed , Nitrogen Compounds , Female , Cattle , Animals , Nitrogen Compounds/metabolism , Animal Feed/analysis , Diet/veterinary , Dietary Fiber/metabolism , Starch/metabolism , Rumen/metabolism , Lactation/metabolism , Dietary Proteins/metabolism , Digestion
3.
Plant Physiol Biochem ; 194: 489-498, 2023 Jan.
Article in English | MEDLINE | ID: mdl-36512983

ABSTRACT

Nitrogen metabolism and the production of primary and secondary metabolites vary according to biotic and abiotic factors such as trace elements (TE) stress, and can, therefore, be considered biomarkers. The present study evaluated the effect of copper (Cu) and iron (Fe) TE, separately, on the metabolism of nitrogen compounds and biomass production, partitioned into shoot and roots of Leucaena leucocephala (Lam.) de Wit., and identified possible defense mechanisms linked to nitrogen metabolism. At 120 days of cultivation, the biomass production of L. leucocephala was higher when exposed to excess Fe than Cu. Nonetheless, the biomass gain (%) of plants exposed to Cu was higher, especially the biomass gains in roots. The tolerance and biomass production of L. leucocephala is related to the regulation of nitrogen metabolism and production of secondary metabolites. The biochemistry of plant metabolism against the excess of Cu and Fe TE manifested similarly, but with some specifics regarding the chemical nature of each metal. There was a reduction in the content of ureides and proteins and an increase in amino acids in the roots in relation to the increase in Cu and Fe concentrations. There was low accumulation of proline in the roots in treatments 400 and 500 mg/dm3 compared to the control for both TE. On the other hand, the total phenolic compounds in the roots increased. Our results indicate that the increased synthesis of amino acids and the accumulation of phenolic compounds is involved in the tolerance of L. leucocephala to Cu and Fe.


Subject(s)
Fabaceae , Nitrogen Compounds , Nitrogen Compounds/metabolism , Nitrogen Compounds/pharmacology , Fabaceae/metabolism , Metals/metabolism , Copper/toxicity , Copper/metabolism , Plant Roots/metabolism , Nitrogen/metabolism , Amino Acids/metabolism
4.
Plant Cell Environ ; 46(3): 962-974, 2023 Mar.
Article in English | MEDLINE | ID: mdl-36562125

ABSTRACT

Rhizodeposition is the export of organic compounds from plant roots to the soil. Carbon allocation towards rhizodeposition has to be balanced with allocation for other physiological functions, which depend on both newly assimilated and stored nonstructural carbohydrate (NSC). To test whether the exudation of primary metabolites scales with plant NSC status, we studied diurnal dynamics of NSC and amino acid (AA) pools and fluxes within the plant and the rhizosphere. These diurnal dynamics were measured in the field and under hydroponic-controlled conditions. Further, C-limiting treatments offered further insight into the regulation of rhizodeposition. The exudation of primary metabolites fluctuated diurnally. The diurnal dynamics of soluble sugars (SS) and AA concentrations in tissues coincided with exudate pool fluctuations in the rhizosphere. SS and AA pools in the rhizosphere increased with NSC and AA pools in the roots. C starvation treatments offset the balance of exudates: AA exudate content in the rhizosphere significantly decreased while SS exudate content remained stable. Our results suggest that rhizodeposition is to some extent controlled by plant C:N status. We propose that SS exudation is less controlled than AA exudation because N assimilation depends on controlled C supply while SS exudation relies to a greater extent on passive diffusion mechanisms.


Subject(s)
Carbon , Nitrogen Compounds , Carbon/metabolism , Nitrogen Compounds/analysis , Nitrogen Compounds/metabolism , Pisum sativum/metabolism , Rhizosphere , Plants/metabolism , Amino Acids/metabolism , Plant Roots/metabolism , Soil/chemistry
5.
Appl Environ Microbiol ; 88(19): e0071922, 2022 10 11.
Article in English | MEDLINE | ID: mdl-36154165

ABSTRACT

Nitropropionic acid (NPA) is a widely distributed naturally occurring nitroaliphatic toxin produced by leguminous plants and fungi. The Southern green shield bug feeds on leguminous plants and shows no symptoms of intoxication. Likewise, its gut-associated microorganisms are subjected to high levels of this toxic compound. In this study, we isolated a bacterium from this insect's gut system, classified as Pseudomonas sp. strain Nvir, that was highly resistant to NPA and was fully degrading it to inorganic nitrogen compounds and carbon dioxide. In order to understand the metabolic fate of NPA, we traced the fate of all atoms of the NPA molecule using isotope tracing experiments with [15N]NPA and [1-13C]NPA, in addition to experiments with uniformly 13C-labeled biomass that was used to follow the incorporation of 12C atoms from [U-12C]NPA into tricarboxylic acid cycle intermediates. With the help of genomics and transcriptomics, we uncovered the isolate's NPA degradation pathway, which involves a putative propionate-3-nitronate monooxygenase responsible for the first step of NPA degradation. The discovered protein shares only 32% sequence identity with previously described propionate-3-nitronate monooxygenases. Finally, we advocate that NPA-degrading bacteria might find application in biotechnology, and their unique enzymes might be used in biosynthesis, bioremediation, and in dealing with postharvest NPA contamination in economically important products. IMPORTANCE Plants have evolved sophisticated chemical defense mechanisms, such as the production of plant toxins in order to deter herbivores. One example of such a plant toxin is nitropropionic acid (NPA), which is produced by leguminous plants and also by certain fungi. In this project, we have isolated a bacterium from the intestinal tract of a pest insect, the Southern green shield bug, that is able to degrade NPA. Through a multiomics approach, we identified the respective metabolic pathway and determined the metabolic fate of all atoms of the NPA molecule. In addition, we provide a new genetic marker that can be used for genome mining toward NPA degradation. The discovery of degradation pathways of plant toxins by environmental bacteria opens new possibilities for pretreatment of contaminated food and feed sources and characterization of understudied enzymes allows their broad application in biotechnology.


Subject(s)
Propionates , Pseudomonas , Animals , Bacteria , Carbon Dioxide/metabolism , Genetic Markers , Insecta , Mixed Function Oxygenases/metabolism , Nitro Compounds , Nitrogen Compounds/metabolism , Plants, Toxic , Propionates/metabolism , Pseudomonas/genetics , Pseudomonas/metabolism
6.
Fitoterapia ; 162: 105284, 2022 Oct.
Article in English | MEDLINE | ID: mdl-36007806

ABSTRACT

The nitrogen-fixing actinomycete Frankia coexists with actinorhizal plants via nodules and supplies nitrogen compounds to the plants. Although communication has been suggested to exist through chemical substances in this nodule symbiosis, the details underlying this mechanism remain elusive. The biphenyl-type diarylheptanoids (BP-CDHs), alnusonol, and alnusdione, previously isolated from the actinorhizal plant A. sieboldiana branch wood, are secondary metabolites that accumulate in a limited number of plant species. However, since relatively widely distributed in actinorhizal plants, we investigated whether adding A. sieboldiana root extracts and these BP-CDHs could affect plant seedlings inoculated with Frankia. The results showed that the addition of root extract or alnusonol significantly increased the number of nodules and lobes more than two times compared with that upon Frankia supplementation only. We also proved that the extracted components of this plant affected nodule symbiosis. Finally, we confirmed through LC-MS that the root extract component contained BP-CDH, alnusonol. The above-described results indicate that BP-CDHs, at leaset alnusonol, might function as signal compounds from the plant side of the actinorhizal symbiosis between A. sieboldiana and Frankia.


Subject(s)
Alnus , Frankia , Diarylheptanoids/pharmacology , Frankia/metabolism , Molecular Structure , Nitrogen/metabolism , Nitrogen Compounds/metabolism , Plant Extracts , Plants , Symbiosis
7.
Nat Prod Rep ; 39(1): 139-162, 2022 01 26.
Article in English | MEDLINE | ID: mdl-34374396

ABSTRACT

Covering: 2015 to 2020Nitrogen heterocyclic natural products (NHNPs) are primary or secondary metabolites containing nitrogen heterocyclic (N-heterocyclic) skeletons. Due to the existence of the N-heterocyclic structure, NHNPs exhibit various bioactivities such as anticancer and antibacterial, which makes them widely used in medicines, pesticides, and food additives. However, the low content of these NHNPs in native organisms severely restricts their commercial application. Although a variety of NHNPs have been produced through extraction or chemical synthesis strategies, these methods suffer from several problems. The development of biotechnology provides new options for the production of NHNPs. This review introduces the recent progress of two strategies for the biosynthesis of NHNPs: enzymatic biosynthesis and microbial cell factory. In the enzymatic biosynthesis part, the recent progress in the mining of enzymes that synthesize N-heterocyclic skeletons (e.g., pyrrole, piperidine, diketopiperazine, and isoquinoline), the engineering of tailoring enzymes, and enzyme cascades constructed to synthesize NHNPs are discussed. In the microbial cell factory part, with tropane alkaloids (TAs) and tetrahydroisoquinoline (THIQ) alkaloids as the representative compounds, the strategies of unraveling unknown natural biosynthesis pathways of NHNPs in plants are summarized, and various metabolic engineering strategies to enhance their production in microbes are introduced. Ultimately, future perspectives for accelerating the biosynthesis of NHNPs are discussed.


Subject(s)
Heterocyclic Compounds/metabolism , Metabolic Engineering/methods , Nitrogen Compounds/metabolism , Metabolic Networks and Pathways
8.
Nanotechnology ; 32(43)2021 Aug 02.
Article in English | MEDLINE | ID: mdl-34271563

ABSTRACT

The urgency for new materials in oncology is immediate. In this study we have developed the g-C3N4, a graphitic-like structure formed by periodically linked tris-s-triazine units. The g-C3N4has been synthesized by a simple and fast thermal process. XRD has shown the formation of the crystalline sheet with a compacted structure. The graphite-like structure and the functional groups have been shown by Raman and FTIR spectroscopy. TEM image and AFM revealed the porous composed of five or six C-N layers stacked. DRS and Photoluminescence analyses confirmed the structure with band gap of 2.87 eV and emission band at 448 nm in different wavelengths excitation conditions. The biological results showed inhibitory effect on cancer cell lines and non-toxic effect in normal cell lines. To the best of our knowledge, this is the first work demonstrating the cytotoxic effects of 2D g-C3N4in a cancer cell line, without any external or synergistic influence. The biodistribution/tissue accumulation showed that g-C3N4present a tendency to accumulation on the lung in the first 2 h, but after 24 h the profile of the biodistribution change and it is found mainly in the liver. Thus, 2D-g-C3N4showed great potential for the treatment of several cancer types.


Subject(s)
Cell Survival , Graphite/chemical synthesis , Graphite/metabolism , Nitrogen Compounds/chemical synthesis , Nitrogen Compounds/metabolism , Reactive Oxygen Species/metabolism , Cell Line, Tumor , Humans , Tissue Distribution
9.
Molecules ; 26(13)2021 Jul 05.
Article in English | MEDLINE | ID: mdl-34279445

ABSTRACT

Melatonin and several of its metabolites are interfering with reactive nitrogen. With the notion of prevailing melatonin formation in tissues that exceeds by far the quantities in blood, metabolites come into focus that are poorly found in the circulation. Apart from their antioxidant actions, both melatonin and N1-acetyl-5-methoxykynuramine (AMK) downregulate inducible and inhibit neuronal NO synthases, and additionally scavenge NO. However, the NO adduct of melatonin redonates NO, whereas AMK forms with NO a stable product. Many other melatonin metabolites formed in oxidative processes also contain nitrosylatable sites. Moreover, AMK readily scavenges products of the CO2-adduct of peroxynitrite such as carbonate radicals and NO2. Protein AMKylation seems to be involved in protective actions.


Subject(s)
Antioxidants/metabolism , Free Radical Scavengers/metabolism , Melatonin/metabolism , Nitrogen Compounds/metabolism , Reactive Nitrogen Species/metabolism , Animals , Humans , Kynuramine/analogs & derivatives , Kynuramine/metabolism , Oxidation-Reduction
10.
Anim Sci J ; 92(1): e13484, 2021.
Article in English | MEDLINE | ID: mdl-33398904

ABSTRACT

We investigated how the chemical composition of broiler chicken and cecectomized laying hen excreta is affected by drying in a forced-air drying chamber at low temperatures. Excreta that was immediately frozen after voiding provided the reference values. The excreta were dried in drying chambers for 4 hr, 6 hr, and 12 hr at 23°C or 33°C in the broiler experiment and 19°C or 29°C in the cecectomized laying hen experiment. The total N and inositol phosphate concentrations in the excreta of broiler chickens and cecectomized laying hens were not influenced (p > .050), except for one inositol tetrakisphosphate isomer (p = .026) in broilers. Compared to fresh excreta, drying did not affect the ammonia concentrations in the cecectomized laying hen experiment (p > .050), but the ammonia concentration was lower when dried for 12 hr at 33°C in the broiler experiment (p = .002). Amino acid concentrations in cecectomized laying hen excreta decreased until 4 hr of drying and then increased at both drying temperatures (p < .001). The results indicate that the applicability of drying poultry excreta at low temperatures in forced-air drying chambers to determine the chemical compound concentrations is trait-dependent. Future studies are necessary to investigate whether these results are also dependent upon the amount of excreta stored in the drying chambers.


Subject(s)
Animal Nutritional Physiological Phenomena/physiology , Chickens/metabolism , Desiccation/methods , Diet/veterinary , Ovulation/metabolism , Phosphoric Monoester Hydrolases/metabolism , Ammonia/metabolism , Animal Feed , Animals , Female , Male , Nitrogen Compounds/metabolism , Glycine max , Temperature , Zea mays
11.
J Mol Neurosci ; 71(2): 358-368, 2021 Feb.
Article in English | MEDLINE | ID: mdl-32653993

ABSTRACT

Autism spectrum disorder (ASD) is a genetic neurodevelopmental disorder involving multiple genes that occurs in early childhood, and a number of risk genes have been reported in previous studies. However, the molecular mechanism of the polygenic regulation leading to pathological changes in ASD remains unclear. First, we identified 8 dysregulated gene coexpression modules by analyzing blood transcriptome data from 96 children with ASD and 42 controls. These modules are rich in ASD risk genes and function related to metabolism, immunity, neurodevelopment, and signaling. The regulatory factors of each module including microRNA (miRNA) and transcription factors (TFs) were subsequently predicted based on transcriptional and posttranscriptional regulation. We identified a set of miRNAs that regulate metabolic and immune modules, as well as transcription factors that cause dysregulation of the modules, and we constructed a coregulatory network between the regulatory factors and modules. Our work reveals dysfunctional modules in children with ASD, elucidates the role of miRNA and transcription factor dysregulation in the pathophysiology of ASD, and helps us to further understand the underlying molecular mechanism of ASD.


Subject(s)
Autism Spectrum Disorder/genetics , Gene Regulatory Networks , Autism Spectrum Disorder/immunology , Autism Spectrum Disorder/physiopathology , Child , Datasets as Topic , Gene Expression Regulation , Gene Ontology , Humans , Male , MicroRNAs/genetics , Multifactorial Inheritance , Neurogenesis/genetics , Nitrogen Compounds/metabolism , RNA, Messenger/genetics , Synapses/physiology , Systems Analysis , Systems Integration , Transcription Factors/physiology , Transcription, Genetic , Transcriptome
12.
Appl Environ Microbiol ; 87(2)2021 01 04.
Article in English | MEDLINE | ID: mdl-33158888

ABSTRACT

Under anoxic conditions, many bacteria, including Shewanella loihica strain PV-4, could use nitrate as an electron acceptor for dissimilatory nitrate reduction to ammonium (DNRA) and/or denitrification. Previous and current studies have shown that DNRA is favored under higher ambient carbon-to-nitrogen (C/N) ratios, whereas denitrification is upregulated under lower C/N ratios, which is consistent with our bioenergetics calculations. Interestingly, computational analyses indicate that the common cyclic AMP receptor protein (designated CRP1) and its paralogue CRP2 might both be involved in the regulation of two competing dissimilatory nitrate reduction pathways, DNRA and denitrification, in S. loihica PV-4 and several other denitrifying Shewanella species. To explore the regulatory mechanism underlying the dissimilatory nitrate reduction (DNR) pathways, nitrate reduction of a series of in-frame deletion mutants was analyzed under different C/N ratios. Deletion of crp1 could accelerate the reduction of nitrite to NO under both low and high C/N ratios. CRP1 is not required for denitrification and actually suppresses production of NO and N2O gases. Deletion of either of the NO-forming nitrite reductase genes nirK or crp2 blocked production of NO gas. Furthermore, real-time PCR and electrophoretic mobility shift assays (EMSAs) demonstrated that the transcription levels of DNRA-relevant genes such as nap-ß (napDABGH), nrfA, and cymA were upregulated by CRP1, while nirK transcription was dependent on CRP2. There are tradeoffs between the different physiological roles of nitrate/lactate, as nitrogen nutrient/carbon source and electron acceptor/donor and CRPs may leverage dissimilatory nitrate reduction pathways for maximizing energy yield and bacterial survival under ambient environmental conditions.IMPORTANCE Some microbes utilize different dissimilatory nitrate reduction (DNR) pathways, including DNR to ammonia (DNRA) and denitrification pathways, for anaerobic respiration in response to ambient carbon/nitrogen ratio changes. Large-scale industrial nitrogen fixation and fertilizer application raise the concern of emission of N2O, a stable gas with potent global warming potential, as consequence of microbial respiration, thereby aggravating global warming and climate change. However, little is known about the molecular mechanism underlying the choice of two competing DNR pathways. We demonstrate that the global regulator CRP1, which is widely encoded in bacteria, is required for DNRA in S. loihica PV-4 strain, while the CRP2 paralogue is required for transcription of the nitrite reductase gene nirK for denitrification. Sufficient carbon source lead to the predominance of DNRA, while carbon source/electron donor deficiency may result in an incomplete denitrification process, raising the concern of high levels of N2O emission from nitrate-rich and carbon source-poor waters and soils.


Subject(s)
Bacterial Proteins/metabolism , Cyclic AMP Receptor Protein/metabolism , Nitrogen Compounds/metabolism , Shewanella/metabolism , Bacterial Proteins/genetics , Cyclic AMP Receptor Protein/genetics , Denitrification , Electrons
13.
Nat Biomed Eng ; 4(9): 853-862, 2020 09.
Article in English | MEDLINE | ID: mdl-32632226

ABSTRACT

Patients with kidney failure commonly require dialysis to remove nitrogenous wastes and to reduce burden to the kidney. Here, we show that a bacterial cocktail orally delivered in animals with kidney injury can metabolize blood nitrogenous waste products before they diffuse through the intestinal mucosal barrier. The microbial cocktail consists of three strains of bacteria isolated from faecal microbiota that metabolize urea and creatinine into amino acids, and is encapsulated in calcium alginate microspheres coated with a polydopamine layer that is selectively permeable to small-molecule nitrogenous wastes. In murine models of acute kidney injury and chronic kidney failure, and in porcine kidney failure models, the encapsulated microbial cocktail significantly reduced urea and creatinine concentrations in blood, and did not lead to any adverse effects.


Subject(s)
Enterosorption/methods , Microbiota , Nitrogen Compounds/isolation & purification , Renal Insufficiency/therapy , Administration, Oral , Alginates/chemistry , Ammonia/metabolism , Animals , Bacteria/classification , Bacteria/isolation & purification , Bacteria/metabolism , Capsules/administration & dosage , Capsules/chemistry , Creatinine/metabolism , Disease Models, Animal , Feces/microbiology , Indoles/chemistry , Mice , Microfluidics , Microspheres , Nitrogen Compounds/metabolism , Polymers/chemistry , Swine , Treatment Outcome , Urea/metabolism
14.
Curr Opin Chem Biol ; 59: 62-68, 2020 12.
Article in English | MEDLINE | ID: mdl-32492614

ABSTRACT

Nitrogen-nitrogen (N-N) bond-containing compounds are occasionally described in nature. Despite their interesting structural and biological features, biosynthetic machineries of N-N bond formation in nature remained undiscovered for a long time. However, the understanding on biosynthetic machineries of N-N bond formation have rapidly accumulated within the last few years. This includes the discovery of nitrous acid biosynthetic pathway used in secondary metabolism and the identification of metalloenzymes actually catalyzing N-N bond formation. In this review, we summarize the recent advances in the understanding on the biosyntheses of N-N bond-containing natural products.


Subject(s)
Bacteria/metabolism , Biological Products/metabolism , Biosynthetic Pathways , Nitrogen Compounds/metabolism , Bacterial Proteins/metabolism , Hydrazines/metabolism , Nitrogen/metabolism
15.
Mikrochim Acta ; 187(5): 286, 2020 04 23.
Article in English | MEDLINE | ID: mdl-32328802

ABSTRACT

Rosette-shaped graphitic carbon nitride (rosette-GCN) is described as a promising alternative to natural peroxidase for its application to fluorescence-based glucose assays. Rosette-GCN was synthesized via a rapid reaction between melamine and cyanuric acid for 10 min at 35 °C, followed by thermal calcination for 4 h. Importantly, rosette-GCN possesses a peroxidase-like activity, producing intense fluorescence from the oxidation of Amplex UltraRed in the presence of H2O2 over a broad pH-range of, including neutral pH; the peroxidase activity of rosette-GCN was ~ 10-fold higher than that of conventional bulk-GCN. This enhancement of peroxidase activity is presumed to occur because rosette-GCN has a significantly larger surface area and higher porosity while preserving its unique graphitic structure. Based on the high peroxidase activity of rosette-GCN along with the catalytic action of glucose oxidase (GOx), glucose was reliably determined down to 1.2 µM with a dynamic linear concentration range of 5.0 to 275.0 µM under neutral pH conditions. Practical utility of this strategy was also successfully demonstrated by determining the glucose levels in serum samples. This work highlights the advantages of GCNs synthesized via rapid methods but with unique structures for the preparation of enzyme-mimicking catalysts, thus extending their applications to the diagnostics field and other biotechnological fields. Graphical abstract.


Subject(s)
Fluorescence , Glucose Oxidase/chemistry , Glucose/analysis , Graphite/chemistry , Hydrogen Peroxide/chemistry , Nitrogen Compounds/chemistry , Peroxidases/chemistry , Biocatalysis , Glucose/metabolism , Glucose Oxidase/metabolism , Graphite/metabolism , Humans , Hydrogen Peroxide/metabolism , Hydrogen-Ion Concentration , Molecular Structure , Nitrogen Compounds/metabolism , Particle Size , Peroxidases/metabolism , Porosity , Surface Properties
16.
J Biol Inorg Chem ; 25(3): 521-540, 2020 05.
Article in English | MEDLINE | ID: mdl-32266560

ABSTRACT

We have made a systematic combined quantum mechanical and molecular mechanical (QM/MM) investigation of possible structures of the N2 bound state of nitrogenase. We assume that N2 is immediately protonated to a N2H2 state, thereby avoiding the problem of determining the position of the protons in the cluster. We have systematically studied both end-on and side-on structures, as well as both HNNH and NNH2 states. Our results indicate that the binding of N2H2 is determined more by interactions and steric clashes with the surrounding protein than by the intrinsic preferences of the ligand and the cluster. The best binding mode with both the TPSS and B3LYP density-functional theory methods has trans-HNNH terminally bound to Fe2. It is stabilised by stacking of the substrate with His-195 and Ser-278. However, several other structures come rather close in energy (within 3-35 kJ/mol) at least in some calculations: The corresponding cis-HNNH structure terminally bound to Fe2 is second best with B3LYP. A structure with HNNH2 terminally bound to Fe6 is second most stable with TPSS (where the third proton is transferred to the substrate from the homocitrate ligand). Structures with trans-HNNH, bound to Fe4 or Fe6, or cis-HNNH bound to Fe6 are also rather stable. Finally, with the TPSS functional, a structure with cis-HNNH side-on binding to the Fe3-Fe4-Fe5-Fe7 face of the cluster is also rather low in energy, but all side-on structures are strongly disfavoured by the B3LYP method.


Subject(s)
Density Functional Theory , Molybdoferredoxin/chemistry , Nitrogen Compounds/chemistry , Nitrogenase/chemistry , Azotobacter vinelandii/enzymology , Binding Sites , Molybdoferredoxin/metabolism , Nitrogen Compounds/metabolism , Nitrogenase/metabolism
17.
Chemosphere ; 238: 124573, 2020 Jan.
Article in English | MEDLINE | ID: mdl-31454741

ABSTRACT

This study investigated the nutrient content and reuse potential of wastewater generated during hydrothermal liquefaction of microalgal biomass. The hydrothermal liquefaction reaction was tested at 270, 300, 330, and 345 °C to determine the effect of temperature on the formation of non-biodegradable dissolved organic nitrogen (nbDON). Total nitrogen, ammonium, color, and toxicity were selected as key characteristics for the reuse of hydrothermal liquefaction wastewater. Results indicated that a higher concentration of nbDON5 (nbDON defined with a 5 day growth assay) and more diverse heterocyclic N-containing organic compounds were associated with greater toxicity as measured by a growth rate assay. For the tested temperature ranges, the total nitrogen content of the hydrothermal liquefaction wastewater slightly decreased from 5020 ±â€¯690 mg L-1 to 4160 ±â€¯120 mg L-1, but the % nbDON5 fraction increased from 57 ±â€¯3 %DON to 96 ±â€¯5 %DON. The temperature of hydrothermal liquefaction reactions can be optimized to maximize carbon conversion and nitrogen recovery.


Subject(s)
Chlorella/growth & development , Microalgae/growth & development , Nitrogen Compounds/toxicity , Organic Chemicals/toxicity , Wastewater/toxicity , Biodegradation, Environmental , Biofuels , Biomass , Nitrogen/analysis , Nitrogen Compounds/metabolism , Organic Chemicals/analysis , Temperature , Wastewater/chemistry
18.
J Colloid Interface Sci ; 563: 336-346, 2020 Mar 15.
Article in English | MEDLINE | ID: mdl-31887697

ABSTRACT

Polymer graphitic carbon nitride (g-C3N4) materials have attracted growing interest owing to their impressive applicability in photocatalysis and optoelectronic devices. However, further applications of g-C3N4 materials are greatly restricted by their chemical inertness and insolubility in most solvents. Regarding the rising prospect of g-C3N4 nanosheets in the biomedicalfield, high solubility and biocompatibility are required for the further development of g-C3N4 materials. In this study, a simple one-step thermal polymerization method was designed to prepare fast-soluble mesoporous g-C3N4 nanosheets by using NH4HSO4 as the critical adjuvant. The products, especially the optimal g-C3N4 NSs-4, showed impressive solubility, biocompatibility and partial biodegradability. The enriched surface hydrophilic groups (-NH2 and -OH) may contribute to improving the solubility of g-C3N4 nanosheets, while the partial biodegradability can be ascribed to the presence of the disulfide bond in the g-C3N4 framework. In this system, the NH4HSO4 adjuvant acted not only as O and S sources, but also as a bubbling agent that endows the g-C3N4 a porous structure with greatly enlarged specific surface area and high separation efficiency of photogenerated electron-hole pairs. These integrative positive factors also greatly contributed to the photocatalytic activity of the g-C3N4 nanosheets. This facile, economic and general fabrication strategy for mesoporous, fast-soluble and biocompatible g-C3N4 with superior visible-light photocatalytic activity is promising in environmental, energy and biomedical fields.


Subject(s)
Biocompatible Materials/metabolism , Graphite/metabolism , Nitrogen Compounds/metabolism , Animals , Biocompatible Materials/chemistry , Catalysis , Cell Line, Tumor , Graphite/chemistry , Mice , Nitrogen Compounds/chemistry , Particle Size , Photochemical Processes , Surface Properties
19.
In. Cardellá Rosales, Lidia; Hernández Fernández, Rolando; Vicedo Tomey, Agustín. Bioquímica Médica. Tomo III. Metabolismo intermediario y su regulación. Segunda edición. La Habana, Editorial Ciencias Médicas, 2ed; 2020. , ilus, tab.
Monography in Spanish | CUMED | ID: cum-76683
SELECTION OF CITATIONS
SEARCH DETAIL
...