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1.
Mol Phylogenet Evol ; 165: 107293, 2021 12.
Article in English | MEDLINE | ID: mdl-34391914

ABSTRACT

Oscillatoria has long been known to be polyphyletic. After recent resequencing of the reference strain for this genus, many Oscillatoria-like groups phylogenetically distant from the type species O. princeps remained unresolved. Here we describe one of these groups as a new genus Tenebriella. Most of the studied strains originate from Central Europe, where they are able to form prominent microbial mats. Despite the overall Oscillatoria-like morphology, Tenebriella can be distinguished by darker trichomes and forms a separate monophyletic clade in phylogenies inferred from the 16S rRNA gene and two additional loci (rpoC1, rbcLX). Within Tenebriella we recognize two new species differing from each other by morphological and ecological characteristics. First species does not fit any known taxon description, and thus is described as a new species T. amphibia. The latter one corresponds with the information available for Oscillatoria curviceps Agardh ex Gomont, and thus new combination T. curviceps is proposed. The phylogenetic analyses of the 16S-23S ITS region together with the comparison of the hypothetical secondary structures confirmed recognition of these two species and additionally revealed presence of a morphologically cryptic species Tenebriella sp. The results corroborate frequent recurrence of convergent morphotypes in the evolution of cyanobacteria and justify further exploration even of the intensively studied European freshwaters using molecular phylogenetics to discover new and ecologically relevant taxa.


Subject(s)
Cyanobacteria , Oscillatoria , Cyanobacteria/genetics , DNA, Bacterial/genetics , Oscillatoria/genetics , Phylogeny , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA
2.
Microb Cell Fact ; 20(1): 14, 2021 Jan 12.
Article in English | MEDLINE | ID: mdl-33430874

ABSTRACT

BACKGROUND: Chlorophyllase catalyzes the hydrolysis of chlorophyll and produces chlorophyllide and phytol. Cyanobacterial chlorophyllases are likely to be more highly heterologously expressed than plant chlorophyllases. A novel recombinant chlorophyllase from the cyanobacterium Oscillatoria acuminata PCC 6304 was successfully expressed in Escherichia coli BL21(DE3). RESULTS: The putative N-terminal 28-amino-acid signal peptide sequence of O. acuminata chlorophyllase (OaCLH) is essential for its activity, but may confer poor solubility on OaCLH. The C-terminal fusion of a 6 × His tag caused a partial loss of activity in recombinant OaCLH, but an N-terminal 6 × His tag did not destroy its activity. The optimal pH and temperature for recombinant OaCLH activity are 7.0 and 40 °C, respectively. Recombinant OaCLH has hydrolysis activities against chlorophyll a, chlorophyll b, bacteriochlorophyll a, and pheophytin a, but prefers chlorophyll b and chlorophyll a as substrates. The results of site-directed mutagenesis experiments indicated that the catalytic triad of OaCLH consists of Ser159, Asp226, and His258. CONCLUSIONS: The high-level expression and broad substrate specificity of recombinant OaCLH make it suitable for genetically engineering and a promising biocatalyst for industrial production, with applications in vegetable oil refining and laundry detergents.


Subject(s)
Bacterial Proteins/metabolism , Carboxylic Ester Hydrolases/metabolism , Chlorophyll A/metabolism , Chlorophyll/metabolism , Oscillatoria/enzymology , Recombinant Proteins/metabolism , Amino Acid Sequence , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Biocatalysis , Carboxylic Ester Hydrolases/chemistry , Carboxylic Ester Hydrolases/genetics , Cloning, Molecular , Escherichia coli/genetics , Hydrogen-Ion Concentration , Hydrolysis , Kinetics , Models, Molecular , Oscillatoria/genetics , Protein Structure, Tertiary , Recombinant Proteins/chemistry , Sequence Homology, Amino Acid , Substrate Specificity , Temperature
3.
Adv Exp Med Biol ; 1293: 129-139, 2021.
Article in English | MEDLINE | ID: mdl-33398810

ABSTRACT

Photoactivated adenylyl cyclase (PAC) was first discovered to be a sensor for photoavoidance in the flagellate Euglena gracilis. PAC is a flavoprotein that catalyzes the production of cAMP upon illumination with blue light, which enables us to optogenetically manipulate intracellular cAMP levels in various biological systems. Recent progress in genome sequencing has revealed several related proteins in bacteria and ameboflagellates. Among them, the PACs from sulfur bacterium Beggiatoa sp. and cyanobacterium Oscillatoria acuminata have been well characterized, including their crystalline structure. Although there have not been many reported optogenetic applications of PACs so far, they have the potential to be used in various fields within bioscience.


Subject(s)
Adenylyl Cyclases/metabolism , Adenylyl Cyclases/radiation effects , Light , Adenylyl Cyclases/genetics , Flavoproteins/genetics , Flavoproteins/metabolism , Optogenetics , Oscillatoria/genetics , Oscillatoria/metabolism
4.
Mar Drugs ; 16(12)2018 Dec 13.
Article in English | MEDLINE | ID: mdl-30551660

ABSTRACT

Certain strains of cyanobacteria produce a wide array of cyanotoxins, such as microcystins, lyngbyatoxins and aplysiatoxins, that are associated with public health issues. In this pilot study, an approach combining LC-MS/MS and molecular networking was employed as a rapid analytical method to detect aplysiatoxins present in four environmental marine cyanobacterial samples collected from intertidal areas in Singapore. Based on 16S-ITS rRNA gene sequences, these filamentous cyanobacterial samples collected from Pulau Hantu were determined as Trichodesmium erythraeum, Oscillatoria sp. PAB-2 and Okeania sp. PNG05-4. Organic extracts were prepared and analyzed on LC-HRMS/MS and Global Natural Product Social Molecular Networking (GNPS) for the presence of aplysiatoxin-related molecules. From the molecular networking, six known compounds, debromoaplysiatoxin (1), anhydrodebromoaplysiatoxin (2), 3-methoxydebromoaplysiatoxin (3), aplysiatoxin (4), oscillatoxin A (5) and 31-noroscillatoxin B (6), as well as potential new analogues, were detected in these samples. In addition, differences and similarities in molecular networking clusters related to the aplysiatoxin molecular family were observed in extracts of Trichodesmium erythraeum collected from two different locations and from different cyanobacterial species found at Pulau Hantu, respectively.


Subject(s)
Aquatic Organisms/chemistry , Lyngbya Toxins/analysis , Oscillatoria/chemistry , Trichodesmium/chemistry , Chromatography, High Pressure Liquid/instrumentation , Chromatography, High Pressure Liquid/methods , DNA, Bacterial/isolation & purification , Lyngbya Toxins/chemistry , Lyngbya Toxins/isolation & purification , Molecular Conformation , Oscillatoria/genetics , Pilot Projects , RNA, Ribosomal, 16S/genetics , Singapore , Tandem Mass Spectrometry/instrumentation , Tandem Mass Spectrometry/methods , Trichodesmium/genetics
5.
FEMS Microbiol Ecol ; 94(8)2018 08 01.
Article in English | MEDLINE | ID: mdl-29878107

ABSTRACT

The saline-alkaline crater-lake Dziani Dzaha (Mayotte, Indian Ocean) is dominated by the bloom-forming cyanobacterium Arthrospira. However, the rest of the phototrophic community remains underexplored because of their minute dimension or lower biomass. To characterize the phototrophic microorganisms living in this ecosystem considered as a modern analog of Precambrian environments, several strains were isolated from the water column and stromatolites and analyzed using the polyphasic approach. Based on morphological, ultrastructural and molecular (16S rRNA gene, 18S rRNA gene, 16S-23S internal transcribed spacer (ITS) region and cpcBA-IGS locus) methods, seven filamentous cyanobacteria and the prasinophyte Picocystis salinarum were identified. Two new genera and four new cyanobacteria species belonging to the orders Oscillatoriales (Desertifilum dzianense sp. nov.) and Synechococcales (Sodalinema komarekii gen. nov., sp. nov., Sodaleptolyngbya stromatolitii gen. nov., sp. nov. and Haloleptolyngbya elongata sp. nov.) were described. This approach also allowed to identify Arthrospira fusiformis with exclusively straight trichomes instead of the spirally coiled form commonly observed in the genus. This study evidenced the importance of using the polyphasic approach to solve the complex taxonomy of cyanobacteria and to study algal assemblages from unexplored ecosystems.


Subject(s)
Cyanobacteria/classification , Lakes/microbiology , Oscillatoria/isolation & purification , Phototrophic Processes/physiology , Spirulina/isolation & purification , Synechococcus/isolation & purification , Biomass , Comoros , Cyanobacteria/genetics , Cyanobacteria/isolation & purification , DNA, Bacterial/genetics , DNA, Ribosomal Spacer/genetics , Indian Ocean , Lakes/chemistry , Oscillatoria/classification , Oscillatoria/genetics , Phylogeny , RNA, Ribosomal, 16S/genetics , Salinity , Sequence Analysis, DNA , Spirulina/classification , Spirulina/genetics , Synechococcus/classification , Synechococcus/genetics
6.
Arch Biochem Biophys ; 647: 1-9, 2018 Jun 01.
Article in English | MEDLINE | ID: mdl-29653078

ABSTRACT

Cylindrospermopsin, a cytotoxin from cyanobacteria, is biosynthesized by a complex pathway, which involves CyrI, an iron and 2-oxoglutarate dependent hydroxylase that transforms 7-deoxy-cylindrospermopsin into cylindrospermopsin and its epimer, 7-epi-cylindrospermopsin, in the last step. The activity of CyrI from Oscillatoria sp. PCC 7926 depends on Fe(II) (Km = 2.1 µM), and 2-oxoglutarate (Km = 3.2 µM), and is strongly inhibited by 7-deoxy-cylindrospermopsin at concentration higher than 1 µM. Using tryptophan fluorescence, we measured the binding to CyrI of Fe(II) (KD = 0.02 µM) and 2-oxoglutarate (KD = 53 µM and KD = 1.1 µM in the absence or presence of 10 µM Fe(II), respectively). The Oscillatoria sp. PCC 6506 CyrI mutants H157A, D159A, H247A, and R257A were all inactive, and impaired in the binding of Fe(II) or 2-oxoglutarate, confirming the identity of the iron ligands and the role of R257 in the binding of 2-oxoglutarate. We constructed several chimeric enzymes using the Oscillatoria sp. PCC 7926 CyrI protein (stereoselective) and that from Oscillatoria sp. PCC 6506 (not stereoselective) to help understanding the structural factors that influence the stereoselectivity of the hydroxylation. Our data suggest that a predicted α-helix in CyrI (positions 87-108) seems to modulate the stereoselectivity of the reaction.


Subject(s)
Bacterial Proteins/metabolism , Bacterial Toxins/metabolism , Biosynthetic Pathways , Mixed Function Oxygenases/metabolism , Oscillatoria/metabolism , Uracil/analogs & derivatives , Alkaloids , Amino Acid Sequence , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Bacterial Toxins/chemistry , Bacterial Toxins/genetics , Binding Sites , Cyanobacteria Toxins , Hydroxylation , Iron/metabolism , Ketoglutaric Acids/metabolism , Mixed Function Oxygenases/chemistry , Mixed Function Oxygenases/genetics , Mutagenesis, Site-Directed , Oscillatoria/chemistry , Oscillatoria/genetics , Sequence Alignment , Stereoisomerism , Uracil/chemistry , Uracil/metabolism
7.
Harmful Algae ; 69: 28-37, 2017 11.
Article in English | MEDLINE | ID: mdl-29122240

ABSTRACT

Taste and odor (T & O) episodes always cause strong effects on drinking water supply system. Luanhe River diversion into Tianjin City in China is an important drinking water resource. Massive growth of a benthic filamentous cyanobacterium with geosmin production in the open canal caused a strong earthy odor episode in Tianjin. On the basis of the morphological and molecular identification of this cyanobacterium as Oscillatoria limosa Agardh ex Gomont, the genetic basis for geosmin biosynthesis and factors influencing growth and geosmin production of O. limosa CHAB 7000 were studied in this work. A 2268-bp open reading frame, encoding 755 amino acids, was amplified and characterized as the geosmin synthase gene (geo), followed by a cyclic nucleotide-binding protein gene (cnb). Phylogenetic analysis implied that the evolution of the geosmin genes in O. limosa CHAB 7000 might involve a horizontal gene transfer event. Examination on the growth and geosmin production of O. limosa CHAB 7000 at different light intensities showed that the maximum geosmin production was observed at 10µmol photons m-2s-1, while the optimum growth was at 60µmol photons m-2s-1. Under three temperature conditions (15°C, 25°C, and 35°C), the maximum growth and geosmin production were observed at 25°C. Most amounts of geosmin were retained in cells during the growth phase, but high temperature and low light intensity increased the release of geosmin into the medium, implying that O. limosa CHAB 7000 had a high potential harm for the release of geosmin from its cells at these adverse conditions.


Subject(s)
Drinking Water/microbiology , Naphthols/metabolism , Oscillatoria/isolation & purification , Base Sequence , China , Cities , DNA, Ribosomal/genetics , Geography , Light , Oscillatoria/chemistry , Oscillatoria/genetics , Oscillatoria/growth & development , Phylogeny , Rivers/chemistry , Temperature , Volatile Organic Compounds/analysis
8.
World J Microbiol Biotechnol ; 33(2): 33, 2017 Feb.
Article in English | MEDLINE | ID: mdl-28074411

ABSTRACT

The filamentous Cyanobacterium Arthrospira is commercially produced and is a functional, high-value, health food. We identified 5 low temperature and low light intensity tolerant strains of Arthrospira sp. (GMPA1, GMPA7, GMPB1, GMPC1, and GMPC3) using ethyl methanesulfonate mutagenesis and low temperature screening. The 5 Arthrospira strains grew rapidly below 14 °C, 43.75 µmol photons m-2 s-1 and performed breed conservation at 2.5 °C, 8.75 µmol photons m-2 s-1. We used morphological identification and molecular genetic analysis to identify GMPA1, GMPA7, GMPB1 and GMPC1 as Arthrospira platensis, while GMPC3 was identified as Arthrospira maxima. Growth at different culture temperatures was determined at regular intervals using dry biomass. At 16 °C and 43.75 µmol photons m-2 s-1, the maximum dry biomass production and the mean dry biomass productivity of GMPA1, GMPB1, and GMPC1 were 2057 ± 80 mg l-1, 68.7 ± 2.5 mg l-1 day-1, 1839 ± 44 mg l-1, 60.6 ± 1.8 mg l-1 day-1, and 2113 ± 64 mg l-1, 77.7 ± 2.5 mg l-1 day-1 respectively. GMPB1 was chosen for additional low temperature tolerance studies and growth temperature preference. In winter, GMPB1 grew well at mean temperatures <10 °C, achieving 3258 mg dry biomass from a starting 68 mg. In summer, GMPB1 grew rapidly at mean temperatures more than 28 °C, achieving 1140 mg l-1 dry biomass from a starting 240 mg. Phytonutrient analysis of GMPB1 showed high levels of C-phycocyanin and carotenoids. Arthrospira metabolism relates to terpenoids, and the methyl-D-erythritol 4-phosphate pathway is the only terpenoid biosynthetic pathway in Cyanobacteria. The 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR) gene from GMPB1 was cloned and phylogenetic analysis showed that GMPB1 is closest to the Cyanobacterium Oscillatoria nigro-viridis PCC711. Low temperature tolerant Arthrospira strains could broaden the areas suitable for cultivation, extend the seasonal cultivation time, and lower production costs.


Subject(s)
Biomass , Oscillatoria/growth & development , Oscillatoria/metabolism , Terpenes/metabolism , Cold Temperature , Light , Mutagenesis , Oscillatoria/genetics , Phylogeny , Sequence Alignment
9.
Sci Rep ; 7: 41181, 2017 01 24.
Article in English | MEDLINE | ID: mdl-28117406

ABSTRACT

Planktothrix is a dominant cyanobacterial genus forming toxic blooms in temperate freshwater ecosystems. We sequenced the genome of planktic and non planktic Planktothrix strains to better represent this genus diversity and life style at the genomic level. Benthic and biphasic strains are rooting the Planktothrix phylogenetic tree and widely expand the pangenome of this genus. We further investigated in silico the genetic potential dedicated to gas vesicles production, nitrogen fixation as well as natural product synthesis and conducted complementary experimental tests by cell culture, microscopy and mass spectrometry. Significant differences for the investigated features could be evidenced between strains of different life styles. The benthic Planktothrix strains showed unexpected characteristics such as buoyancy, nitrogen fixation capacity and unique natural product features. In comparison with Microcystis, another dominant toxic bloom-forming genus in freshwater ecosystem, different evolutionary strategies were highlighted notably as Planktothrix exhibits an overall greater genetic diversity but a smaller genomic plasticity than Microcystis. Our results are shedding light on Planktothrix evolution, phylogeny and physiology in the frame of their diverse life styles.


Subject(s)
Genetic Variation , Oscillatoria/genetics , Oscillatoria/metabolism , Genome , Genome, Bacterial , Genomics , Phylogeny
10.
Proc Natl Acad Sci U S A ; 113(24): 6659-64, 2016 06 14.
Article in English | MEDLINE | ID: mdl-27247413

ABSTRACT

Cyclic-AMP is one of the most important second messengers, regulating many crucial cellular events in both prokaryotes and eukaryotes, and precise spatial and temporal control of cAMP levels by light shows great promise as a simple means of manipulating and studying numerous cell pathways and processes. The photoactivated adenylate cyclase (PAC) from the photosynthetic cyanobacterium Oscillatoria acuminata (OaPAC) is a small homodimer eminently suitable for this task, requiring only a simple flavin chromophore within a blue light using flavin (BLUF) domain. These domains, one of the most studied types of biological photoreceptor, respond to blue light and either regulate the activity of an attached enzyme domain or change its affinity for a repressor protein. BLUF domains were discovered through studies of photo-induced movements of Euglena gracilis, a unicellular flagellate, and gene expression in the purple bacterium Rhodobacter sphaeroides, but the precise details of light activation remain unknown. Here, we describe crystal structures and the light regulation mechanism of the previously undescribed OaPAC, showing a central coiled coil transmits changes from the light-sensing domains to the active sites with minimal structural rearrangement. Site-directed mutants show residues essential for signal transduction over 45 Å across the protein. The use of the protein in living human cells is demonstrated with cAMP-dependent luciferase, showing a rapid and stable response to light over many hours and activation cycles. The structures determined in this study will assist future efforts to create artificial light-regulated control modules as part of a general optogenetic toolkit.


Subject(s)
Adenylyl Cyclases/chemistry , Bacterial Proteins/chemistry , Cyclic AMP/chemistry , Oscillatoria/enzymology , Adenylyl Cyclases/genetics , Adenylyl Cyclases/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Cyclic AMP/genetics , Cyclic AMP/metabolism , Enzyme Activation/genetics , Enzyme Activation/radiation effects , HEK293 Cells , Humans , Light , Oscillatoria/genetics , Protein Domains , Second Messenger Systems/genetics , Second Messenger Systems/radiation effects , Structure-Activity Relationship
11.
Environ Technol ; 37(6): 641-51, 2016.
Article in English | MEDLINE | ID: mdl-26215422

ABSTRACT

This study investigated the impact of four environmental factors on the recruitment of cyanobacteria from bottom sediments in the eutrophic Shanzi Reservoir. Temperature and light were identified as the key determinants for the recruitment of Microcystis and Oscillatoria. Cyanobacteria became dominant at higher temperature (20 °C) and light intensity (2000 lx) and Microcystis and Oscillatoria were the major species. Detailed recruitment simulation undertaken with the respective gradients of temperature and light suggested that both Microcystis and Oscillatoria are temperature sensitive and that their critical temperature point was 10 °C. However, distinct light impacts were observed only on Microcystis. The recruitment of Oscillatoria was light independent, whereas Microcystis had a positive relationship with light intensity. Physical disturbance promoted Microcystis recruitment and also affected the structure of the recruited cyanobacterial community at the water-sediment interface, based on quantitative polymerase chain reaction (qPCR) and phylogenetic analysis.


Subject(s)
Geologic Sediments/microbiology , Microcystis/isolation & purification , Oscillatoria/isolation & purification , Water Microbiology , China , DNA, Bacterial/genetics , Eutrophication , Light , Microcystis/genetics , Oscillatoria/genetics , Phylogeny , Polymerase Chain Reaction , RNA, Ribosomal, 16S/genetics , Temperature , Water Supply
12.
Gene ; 544(2): 191-7, 2014 Jul 10.
Article in English | MEDLINE | ID: mdl-24768724

ABSTRACT

To study the assembly of phycocyanin ß subunit, the gene cpcT was first cloned from Arthrospira platensis FACHB314. To explore the function of cpcT, the DNA of phycocyanin ß subunit and cpcT were transformed into Escherichia coli BL21 with the plasmid pET-hox1-pcyA, which contained the genes hemeoxygenase 1 (Hox1) and ferredoxin oxidoreductase (PcyA) needed to produce phycocyanobilin. The transformed strains showed specific phycocyanin fluorescence, and the fluorescence intensity was stronger than the strains with only phycocyanin ß subunit, indicating that CpcT can promote the assembly of phycocyanin to generate fluorescence. To study the possible binding sites of apo-phycocyanin and phycocyanobilin, the Cys-82 and Cys-153 of the ß subunit were individually mutated, giving two kinds of mutants. The results show that Cys-153 maybe the active site for ß subunit binding to phycocyanobilins, which is catalyzed by CpcT in A. platensis FACHB314.


Subject(s)
Bacterial Proteins/genetics , Bile Pigments/metabolism , Lyases/genetics , Oscillatoria/genetics , Phycobilins/metabolism , Phycocyanin/metabolism , Amino Acid Sequence , Bacterial Proteins/metabolism , Base Sequence , Binding Sites/genetics , Catalytic Domain/genetics , Cloning, Molecular , DNA, Bacterial/genetics , Gene Expression , Lyases/metabolism , Molecular Sequence Data , Mutation , Oscillatoria/enzymology , Phycocyanin/biosynthesis , Protein Structure, Secondary
13.
Biomed Res Int ; 2013: 760681, 2013.
Article in English | MEDLINE | ID: mdl-23762857

ABSTRACT

Three new cyanobacterial strains, that have been previously purified from the hydroid Dynamena pumila (L., 1758), isolated from the White Sea, were studied using scanning and transmission electron microscopy methods and were characterized by using almost complete sequence of the 16S rRNA gene, internal transcribed spacer 16S-23S rRNA, and part of the gene for 23S rRNA. The full nucleotide sequences of the rRNA gene clusters were deposited to GenBank (HM064496.1, GU265558.1, JQ259187.1). Comparison of rRNA gene cluster sequences of Synechococcus cyanobacterium 1Dp66E-1, Oscillatoriales cyanobacterium 2Dp86E, and Nostoc sp. 10Dp66E with all sequences present at the GenBank shows that these cyanobacterial strains do not have 100% identity with any organisms investigated previously. Furthermore, for the first time heterotrophic bacterium, associated with Nostoc sp. 10Dp66E, was identified as a member of the new phylum Gemmatimonadetes, genus of Gemmatimonas (GenBank accession number is JX437625.1). Phylogenetic analysis showed that cyanobacterium Synechococcus sp. 1Dp66E-1 forms the unique branch and belongs to a cluster of Synechococcus, including freshwater and sea strains. Oscillatoriales cyanobacterium 2Dp86E belongs to a cluster of Leptolyngbya strains. Isolate Nostoc sp. 10Dp66E forms unique branch and belongs to a cluster of the genus Nostoc, with the closest relative of Nostoc commune isolates.


Subject(s)
Cyanobacteria/classification , Cyanobacteria/ultrastructure , Hydrozoa/microbiology , Oceans and Seas , Phylogeny , Animals , Cyanobacteria/cytology , Cyanobacteria/isolation & purification , Molecular Sequence Data , Multigene Family , Nostoc/classification , Nostoc/genetics , Nostoc/isolation & purification , Operon/genetics , Oscillatoria/classification , Oscillatoria/genetics , Oscillatoria/isolation & purification , RNA, Bacterial/genetics , Synechococcus/classification , Synechococcus/genetics , Synechococcus/isolation & purification
14.
PLoS One ; 8(4): e62580, 2013.
Article in English | MEDLINE | ID: mdl-23630635

ABSTRACT

The number and prevalence of coral diseases/syndromes are increasing worldwide. Dark Spot Syndrome (DSS) afflicts numerous coral species and is widespread throughout the Caribbean, yet there are no known causal agents. In this study we aimed to characterise the microbial communities (bacteria and fungi) associated with DSS lesions affecting the coral Stephanocoenia intersepta using nonculture molecular techniques. Bacterial diversity of healthy tissues (H), those in advance of the lesion interface (apparently healthy AH), and three sizes of disease lesions (small, medium, and large) varied significantly (ANOSIM R  = 0.052 p<0.001), apart from the medium and large lesions, which were similar in their community profile. Four bacteria fitted into the pattern expected from potential pathogens; namely absent from H, increasing in abundance within AH, and dominant in the lesions themselves. These included ribotypes related to Corynebacterium (KC190237), Acinetobacter (KC190251), Parvularculaceae (KC19027), and Oscillatoria (KC190271). Furthermore, two Vibrio species, a genus including many proposed coral pathogens, dominated the disease lesion and were absent from H and AH tissues, making them candidates as potential pathogens for DSS. In contrast, other members of bacteria from the same genus, such as V. harveyii were present throughout all sample types, supporting previous studies where potential coral pathogens exist in healthy tissues. Fungal diversity varied significantly as well, however the main difference between diseased and healthy tissues was the dominance of one ribotype, closely related to the plant pathogen, Rhytisma acerinum, a known causal agent of tar spot on tree leaves. As the corals' symbiotic algae have been shown to turn to a darker pigmented state in DSS (giving rise to the syndromes name), the two most likely pathogens are R. acerinum and the bacterium Oscillatoria, which has been identified as the causal agent of the colouration in Black Band Disease, another widespread coral disease.


Subject(s)
Anthozoa/microbiology , Metagenome , Acinetobacter/genetics , Animals , Ascomycota/genetics , Conservation of Natural Resources , Coral Reefs , Corynebacterium/genetics , DNA, Fungal/genetics , DNA, Ribosomal Spacer/genetics , Denaturing Gradient Gel Electrophoresis , Host-Pathogen Interactions , Molecular Typing , Mycological Typing Techniques , Oscillatoria/genetics , RNA, Bacterial/genetics , RNA, Ribosomal, 16S/genetics , Vibrio/genetics
15.
World J Microbiol Biotechnol ; 28(10): 3053-65, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22806744

ABSTRACT

Cyanobacteria have been found to be potential biosorbents of metal ions from waste water. The Pb²âº removal capacity of growing cells of indigenous cyanobacterium Oscillatoria laete-virens (Crouan and Crouan) Gomont was studied under batch experiments and it was found capable of removing Pb²âº of lower concentrations (below 100 mg L⁻¹). The effects of different concentrations of Pb²âº, on the growth rate of alga were also evaluated. The research parameters include the pH of the solution, contact time, initial concentration of Pb²âº, and culture density. Of the parameters studied, the pH of the solution was found to be the most crucial. The removal of Pb²âº peaked at an initial pH of 5. The data obtained from the equilibrium experiments were found well fitting with the Langmuir isotherm with a maximum sorptive capacity (q(max)) of 20.36 mg g⁻¹, indicating a good biosorbtive potential of growing cells. This was confirmed using scanning electron microscope and energy dispersive X-ray analysis, which showed the adsorption of lead on the surface of the cell. The species could tolerate a concentration as high as 60 mg L⁻¹ of Pb²âº. It was observed that the removal obeyed the pseudo-second-order kinetics. The percentage removal was found to decrease with increasing metal concentration, from 10 to 100 mg L⁻¹. FTIR analysis indicates the involvement of amino, carboxylic and amide groups in the sorption process. Among the desorbing agents evaluated, an efficient recovery of 90.2 % was achieved by HCl, in 24 h. Thus Oscillatoria laete-virens (Crouan and Crouan) Gomont seems to be a promising metal biosorbent for the treatment of Pb²âº, in waste waters.


Subject(s)
Industrial Waste/analysis , Lead/isolation & purification , Oscillatoria/metabolism , Wastewater/microbiology , Adsorption , Hydrogen-Ion Concentration , Ions/analysis , Ions/metabolism , Kinetics , Microscopy, Electron, Scanning/methods , Oscillatoria/genetics , Oscillatoria/growth & development , Oscillatoria/isolation & purification , Solutions , Spectrometry, X-Ray Emission/methods , Spectroscopy, Fourier Transform Infrared/methods , Water Pollutants, Chemical/isolation & purification
16.
Appl Environ Microbiol ; 77(20): 7271-8, 2011 Oct.
Article in English | MEDLINE | ID: mdl-21873484

ABSTRACT

Cyanobacterial mass occurrences are common in fresh and brackish waters. They pose a threat to water users due to toxins frequently produced by the cyanobacterial species present. Anatoxin-a and homoanatoxin-a are neurotoxins synthesized by various cyanobacteria, e.g., Anabaena, Oscillatoria, and Aphanizomenon. The biosynthesis of these toxins and the genes involved in anatoxin production were recently described for Oscillatoria sp. strain PCC 6506 (A. Méjean et al., J. Am. Chem. Soc. 131:7512-7513, 2009). In this study, we identified the anatoxin synthetase gene cluster (anaA to anaG and orf1; 29 kb) in Anabaena sp. strain 37. The gene (81.6% to 89.2%) and amino acid (78.8% to 86.9%) sequences were highly similar to those of Oscillatoria sp. PCC 6506, while the organization of the genes differed. Molecular detection methods for potential anatoxin-a and homoanatoxin-a producers of the genera Anabaena, Aphanizomenon, and Oscillatoria were developed by designing primers to recognize the anaC gene. Anabaena and Oscillatoria anaC genes were specifically identified in several cyanobacterial strains by PCR. Restriction fragment length polymorphism (RFLP) analysis of the anaC amplicons enabled simultaneous identification of three producer genera: Anabaena, Oscillatoria, and Aphanizomenon. The molecular methods developed in this study revealed the presence of both Anabaena and Oscillatoria as potential anatoxin producers in Finnish fresh waters and the Baltic Sea; they could be applied for surveys of these neurotoxin producers in other aquatic environments.


Subject(s)
Anabaena/genetics , Anabaena/metabolism , Biosynthetic Pathways/genetics , Ligases/genetics , Multigene Family , Tropanes/metabolism , Aphanizomenon/genetics , Bacterial Proteins/genetics , Cyanobacteria Toxins , DNA Primers/genetics , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , Gene Order , Molecular Sequence Data , Oscillatoria/genetics , Polymerase Chain Reaction , Polymorphism, Restriction Fragment Length , Sequence Analysis, DNA , Sequence Homology, Nucleic Acid
17.
J Nat Prod ; 74(8): 1737-43, 2011 Aug 26.
Article in English | MEDLINE | ID: mdl-21751786

ABSTRACT

The evolutionary relationships of cyanobacteria, as inferred by their SSU (16S) rRNA genes, were used as predictors of their potential to produce varied secondary metabolites. The evolutionary relatedness in geographically distant cyanobacterial specimens was then used as a guide for the detection and isolation of new variations of predicted molecules. This phylogeny-guided isolation approach for new secondary metabolites was tested in its capacity to direct the search for specific classes of new natural products from Curaçao marine cyanobacteria. As a result, we discovered ethyl tumonoate A (1), a new tumonoic acid derivative with anti-inflammatory activity and inhibitory activity of calcium oscillations in neocortical neurons.


Subject(s)
Anti-Inflammatory Agents, Non-Steroidal/isolation & purification , Oscillatoria/chemistry , Phylogeny , Proline/analogs & derivatives , Proline/isolation & purification , Animals , Anti-Inflammatory Agents, Non-Steroidal/chemistry , Anti-Inflammatory Agents, Non-Steroidal/pharmacology , Genes, rRNA , Humans , Marine Biology , Mice , Molecular Structure , Oscillatoria/genetics , Polymerase Chain Reaction , Proline/chemistry , Proline/pharmacology
18.
PLoS One ; 6(2): e14657, 2011 Feb 10.
Article in English | MEDLINE | ID: mdl-21347365

ABSTRACT

Saxitoxin and its analogs cause the paralytic shellfish-poisoning syndrome, adversely affecting human health and coastal shellfish industries worldwide. Here we report the isolation, sequencing, annotation, and predicted pathway of the saxitoxin biosynthetic gene cluster in the cyanobacterium Lyngbya wollei. The gene cluster spans 36 kb and encodes enzymes for the biosynthesis and export of the toxins. The Lyngbya wollei saxitoxin gene cluster differs from previously identified saxitoxin clusters as it contains genes that are unique to this cluster, whereby the carbamoyltransferase is truncated and replaced by an acyltransferase, explaining the unique toxin profile presented by Lyngbya wollei. These findings will enable the creation of toxin probes, for water monitoring purposes, as well as proof-of-concept for the combinatorial biosynthesis of these natural occurring alkaloids for the production of novel, biologically active compounds.


Subject(s)
Genes, Bacterial/genetics , Harmful Algal Bloom , Lyngbya Toxins/biosynthesis , Multigene Family/genetics , Oscillatoria/genetics , Oscillatoria/metabolism , Saxitoxin/biosynthesis , Base Sequence , Computational Biology , Evolution, Molecular , Lyngbya Toxins/chemistry , Molecular Sequence Data , Open Reading Frames/genetics , Saxitoxin/chemistry , Sequence Analysis, DNA , Sequence Homology, Nucleic Acid
19.
Environ Microbiol ; 13(4): 900-10, 2011 Apr.
Article in English | MEDLINE | ID: mdl-21143569

ABSTRACT

Molecular studies of black band disease (BBD), a coral disease found on tropical and subtropical reefs worldwide, have shown that one 16S rRNA gene sequence is ubiquitous. This sequence has been reported to be a member of the cyanobacterial genus Oscillatoria. In this study, extracts of two cultured laboratory strains of BBD Oscillatoria, and for comparison two strains of BBD Geitlerinema, all isolated from reefs of the wider Caribbean, were analysed using Ultra-Performance Liquid Chromatography-Tandem Quad Mass Spectrometry (UPLC-MS/MS). The cyanotoxin microcystin-LR (MC-LR) was found in all strains, and one Geitlerinema strain additionally produced MC-YR. Growth experiments that monitored toxin production using enzyme-linked immunosorbent assay (ELISA) showed that BBD Oscillatoria produced yields of MC-LR equivalent (0.02-0.04 mg g(-1)) independent of biomass and culture conditions (varying temperature, pH, light and organic carbon). This pattern is different from BBD Geitlerinema, which increased production of MC-LR equivalent in the presence of organic carbon in the light and dark and at a relatively lower temperature. These results indicate that different species and strains of BBD cyanobacteria, which can occur in the same BBD infection, may contribute to BBD pathobiology by producing different toxins and different amounts of toxin at different stages in the disease process. This is the first detailed study of laboratory cultures of the ubiquitous BBD cyanobacterium Oscillatoria sp. isolated from Caribbean reefs.


Subject(s)
Anthozoa/microbiology , Cyanobacteria/metabolism , Microcystins/biosynthesis , Oscillatoria/metabolism , Animals , Aspartic Acid Endopeptidases , Bacterial Toxins/analysis , Bacterial Toxins/biosynthesis , Biomass , Caribbean Region , Chromatography, Liquid , Cyanobacteria/genetics , DNA, Bacterial/genetics , Marine Toxins/analysis , Marine Toxins/biosynthesis , Microcystins/analysis , Oscillatoria/genetics , RNA, Ribosomal, 16S/genetics , Tandem Mass Spectrometry , Temperature
20.
J Bacteriol ; 192(19): 5264-5, 2010 Oct.
Article in English | MEDLINE | ID: mdl-20675499

ABSTRACT

We report a draft sequence of the genome of Oscillatoria sp. PCC 6506, a cyanobacterium that produces anatoxin-a and homoanatoxin-a, two neurotoxins, and cylindrospermopsin, a cytotoxin. Beside the clusters of genes responsible for the biosynthesis of these toxins, we have found other clusters of genes likely involved in the biosynthesis of not-yet-identified secondary metabolites.


Subject(s)
Genome, Bacterial/genetics , Multigene Family/genetics , Oscillatoria/genetics , Bacterial Toxins/genetics , Molecular Sequence Data , Multigene Family/physiology
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