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1.
Emerg Microbes Infect ; 13(1): 2327385, 2024 Dec.
Article in English | MEDLINE | ID: mdl-38514916

ABSTRACT

Several cellular factors have been reported to be required for replication of classical swine fever virus (CSFV), a member of the genus Pestivirus within the family Flaviviridae. However, many steps of its replication cycle are still poorly understood. The low-density lipoprotein receptor (LDLR) is involved in cell entry and post-entry processes of different viruses including other members of the Flaviviridae. In this study, the relevance of LDLR in replication of CSFV and another porcine pestivirus, Bungowannah pestivirus (BuPV), was investigated by antibody-mediated blocking of LDLR and genetically engineered porcine cell lines providing altered LDLR expression levels. An LDLR-specific antibody largely blocked infection with CSFV, but had only a minor impact on BuPV. Infections of the genetically modified cells confirmed an LDLR-dependent replication of CSFV. Compared to wild type cells, lower and higher expression of LDLR resulted in a 3.5-fold decrease or increase in viral titers already 20 h post infection. Viral titers were 25-fold increased in LDLR-overexpressing cells compared to cells with reduced LDLR expression at 72 h post infection. The varying LDLR expression levels had no clear effect on permissivity to BuPV. A decoy receptor assay using recombinant soluble LDLR provided no evidence that LDLR may function as a receptor for CSFV or BuPV. Differences in their dependency on LDLR suggest that CSFV and BuPV likely use different mechanisms to interact with their host cells. Moreover, this study reveals similarities in the replication cycles of CSFV and other members of the family Flaviviridae that are dependent on LDLR.


Subject(s)
Classical Swine Fever Virus , Pestivirus , Swine , Animals , Classical Swine Fever Virus/genetics , Pestivirus/physiology , Cell Line , Lipoproteins, LDL/metabolism , Virus Replication
2.
Viruses ; 14(2)2022 02 05.
Article in English | MEDLINE | ID: mdl-35215920

ABSTRACT

Linda virus (LindaV) was first identified in a pig farm in Styria, Austria in 2015 and associated with congenital tremor (CT) type A-II in newborn piglets. Since then, only one more LindaV affected farm was retrospectively discovered 10 km away from the initially affected farm. Here, we report the recent outbreak of a novel LindaV strain in a farrow-to-finish farm in the federal state Carinthia, Austria. No connection between this farm and the previously affected farms could be discovered. The outbreak was characterized by severe CT cases in several litters and high preweaning mortality. A herd visit two months after the onset of clinical symptoms followed by a diagnostic workup revealed the presence of several viremic six-week-old nursery pigs. These animals shed large amounts of virus via feces and saliva, implying an important epidemiological role for within- and between-herd virus transmission. The novel LindaV strain was isolated and genetically characterized. The findings underline a low prevalence of LindaV in the Austrian pig population and highlight the threat when introduced into a pig herd. Furthermore, the results urge the need to better understand the routes of persistence and transmission of this enigmatic pestivirus in the pig population.


Subject(s)
Communicable Diseases, Emerging/veterinary , Pestivirus Infections/veterinary , Pestivirus/isolation & purification , Swine Diseases/virology , Animals , Austria/epidemiology , Communicable Diseases, Emerging/epidemiology , Communicable Diseases, Emerging/virology , Disease Outbreaks , Farms , Feces/virology , Pestivirus/classification , Pestivirus/genetics , Pestivirus/physiology , Pestivirus Infections/epidemiology , Pestivirus Infections/virology , Phylogeny , Retrospective Studies , Swine , Swine Diseases/epidemiology
3.
Viruses ; 14(2)2022 02 13.
Article in English | MEDLINE | ID: mdl-35215974

ABSTRACT

The entry of BVDV into bovine cells was studied using CRIB cells (cells resistant to infection with bovine viral diarrhea virus [BVDV]) that have evolved from MDBK cells by a spontaneous loss of susceptibility to BVDV. Recently, larger genetic deletions were reported but no correlation of the affected genes and the resistance to BVDV infection could be established. The metalloprotease ADAM17 was reported as an essential attachment factor for the related classical swine fever virus (CSFV). To assess whether ADAM17 might be involved in the resistance of CRIB-1 cells to pestiviruses, we analyzed its expression in CRIB-1 and MDBK cells. While ADAM17 protein was detectable in MBDK cells, it was absent from CRIB-1 cells. No functional full-length ADAM17 mRNA could be detected in CRIB cells and genetic analysis revealed the presence of two defective alleles. Transcomplementation of functional ADAM17 derived from MDBK cells in CRIB-1 cells resulted in a nearly complete reversion of their resistance to pestiviral infection. Our results demonstrate that ADAM17 is a key cellular factor for the pestivirus resistance of CRIB-1 cells and establishes its essential role for a broader range of pestiviruses.


Subject(s)
ADAM17 Protein/metabolism , Cell Line/virology , Diarrhea Viruses, Bovine Viral/metabolism , Pestivirus/metabolism , Animals , Cattle , Diarrhea Viruses, Bovine Viral/physiology , Pestivirus/physiology , Virus Replication/physiology
4.
Viruses ; 13(8)2021 08 10.
Article in English | MEDLINE | ID: mdl-34452446

ABSTRACT

The genus Pestivirus, family Flaviviridae, includes four economically important viruses of livestock, i.e., bovine viral diarrhea virus-1 (BVDV-1) and -2 (BVDV-2), border disease virus (BDV) and classical swine fever virus (CSFV). Erns and Npro, both expressed uniquely by pestiviruses, counteract the host's innate immune defense by interfering with the induction of interferon (IFN) synthesis. The structural envelope protein Erns also exists in a soluble form and, by its endoribonuclease activity, degrades immunostimulatory RNA prior to their activation of pattern recognition receptors. Here, we show that at least three out of four positively-charged residues in the C-terminal glycosaminoglycan (GAG)-binding site of BVDV-Erns are required for efficient cell entry, and that a positively charged region more upstream is not involved in cell entry but rather in RNA-binding. Moreover, the C-terminal domain on its own determines intracellular targeting, as GFP fused to the C-terminal amino acids of Erns was found at the same compartments as wt Erns. In summary, RNase activity and uptake into cells are both required for Erns to act as an IFN antagonist, and the C-terminal amphipathic helix containing the GAG-binding site determines the efficiency of cell entry and its intracellular localization.


Subject(s)
Amino Acids/chemistry , Endoribonucleases/metabolism , Immune Evasion , Pestivirus/genetics , Pestivirus/physiology , Virus Internalization , Amino Acids/metabolism , Animals , Cattle , Cells, Cultured , Endoribonucleases/pharmacology , Host Microbial Interactions , Pestivirus/enzymology , Pestivirus/immunology , RNA, Viral/genetics , Turbinates/cytology , Turbinates/drug effects , Turbinates/virology , Viral Envelope Proteins/metabolism
5.
Arch Virol ; 166(6): 1633-1642, 2021 Jun.
Article in English | MEDLINE | ID: mdl-33787991

ABSTRACT

Pestivirus nonstructural protein 3 (NS3) is a multifunctional protein with protease and helicase activities that are essential for virus replication. In this study, we used a combination of biochemical and genetic approaches to investigate the relationship between a positively charged patch on the protease module and NS3 function. The surface patch is composed of four basic residues, R50, K74 and K94 in the NS3 protease domain and H24 in the structurally integrated cofactor NS4APCS. Single-residue or simultaneous four-residue substitutions in the patch to alanine or aspartic acid had little effect on ATPase activity. However, single substitutions of R50, K94 or H24 or a simultaneous four-residue substitution resulted in apparent changes in the helicase activity and RNA-binding ability of NS3. When these mutations were introduced into a classical swine fever virus (CSFV) cDNA clone, a single substitution at K94 or a simultaneous four-residue substitution (Qua_A or Qua_D) impaired the production of infectious virus. Furthermore, the replication efficiency of the CSFV variants was partially correlated with the helicase activity of NS3 in vitro. Our results suggest that the conserved positively charged patch on NS3 plays an important role in modulating the NS3 helicase activity in vitro and CSFV production.


Subject(s)
Pestivirus/physiology , RNA Helicases/metabolism , Viral Nonstructural Proteins/metabolism , Adenosine Triphosphatases , Amino Acid Sequence , Amino Acid Substitution , Escherichia coli , Gene Expression Regulation, Viral , Models, Molecular , Mutation , Pestivirus/genetics , Protein Conformation , RNA Helicases/genetics , Serine Endopeptidases/metabolism , Virus Replication
6.
Transbound Emerg Dis ; 67(6): 2770-2774, 2020 Nov.
Article in English | MEDLINE | ID: mdl-32441848

ABSTRACT

Atypical porcine pestivirus (APPV) has recently been reported to be associated with congenital tremor in newborn piglets. Only limited information is available about the prevalence at herd level in endemically infected herds. Therefore, the aim of this study was to determine the within-herd prevalence of APPV in a sub-clinically infected sow herd in Switzerland and to analyse associations between the serological status as well as the age and sex of the pigs, litter number and days after the last insemination. In a census sampling, blood was collected from 125 sows, aged 180 days or older, and six boars. Sera were examined applying an indirect APPV-specific ELISA to individual sera and an APPV RT-PCR targeting the NS3 encoding regions of APPV to pools of five. The APPV antibody status was classified into low (S/P value ≤ 0.5), intermediate (S/P value = 0.5-1) and high reactivity (S/P value > 1.0). None of the pooled serum samples was positive for specific genome fragments of APPV. Of the 131 samples, 53.4% were highly reactive, 39.7% showed an intermediate reactivity, and 6.9% showed a low reactivity in the indirect ELISA, that is, were serologically negative. Significant associations between the S/P values and the age of the pigs (p < .001), the litter number (p < .001) and the numbers of days after the last insemination (p = .0188) were observed. The results indicate that this sow herd was previously infected with APPV, while viremia was not detected in any of the adult pigs. This might explain the absence of clinical signs in the suckling pigs. Potential reinfection and circulation of APPV in this sow herd might be due to semen from commercial boar studs or APPV-positive animals in the absence of specific clinical signs.


Subject(s)
Asymptomatic Infections/epidemiology , Pestivirus Infections/veterinary , Pestivirus/physiology , Swine Diseases/epidemiology , Age Factors , Animals , Female , Male , Pestivirus Infections/epidemiology , Pestivirus Infections/virology , Prevalence , Seroepidemiologic Studies , Sex Factors , Sus scrofa , Swine , Swine Diseases/virology , Switzerland/epidemiology
7.
J Virol ; 94(14)2020 07 01.
Article in English | MEDLINE | ID: mdl-32404522

ABSTRACT

Autonomously replicating subgenomic Bungowannah virus (BuPV) RNAs (BuPV replicons) with deletions of the genome regions encoding the structural proteins C, ERNS, E1, and E2 were constructed on the basis of an infectious cDNA clone of BuPV. Nanoluciferase (Nluc) insertion was used to compare the replication efficiencies of all constructs after electroporation of in vitro-transcribed RNA from the different clones. Deletion of C, E1, E2, or the complete structural protein genome region (C-ERNS-E1-E2) prevented the production of infectious progeny virus, whereas deletion of ERNS still allowed the generation of infectious particles. However, those ΔERNS viral particles were defective in virus assembly and/or egress and could not be further propagated for more than three additional passages in porcine SK-6 cells. These "defective-in-third-cycle" BuPV ΔERNS mutants were subsequently used to express the classical swine fever virus envelope protein E2, the N-terminal domain of the Schmallenberg virus Gc protein, and the receptor binding domain of the Middle East respiratory syndrome coronavirus spike protein. The constructs could be efficiently complemented and further passaged in SK-6 cells constitutively expressing the BuPV ERNS protein. Importantly, BuPVs are able to infect a wide variety of target cell lines, allowing expression in a very wide host spectrum. Therefore, we suggest that packaged BuPV ΔERNS replicon particles have potential as broad-spectrum viral vectors.IMPORTANCE The proteins NPRO and ERNS are unique for the genus Pestivirus, but only NPRO has been demonstrated to be nonessential for in vitro growth. While this was also speculated for ERNS, it has always been previously shown that pestivirus replicons with deletions of the structural proteins ERNS, E1, or E2 did not produce any infectious progeny virus in susceptible host cells. Here, we demonstrated for the first time that BuPV ERNS is dispensable for the generation of infectious virus particles but still important for efficient passaging. The ERNS-defective BuPV particles showed clearly limited growth in cell culture but were capable of several rounds of infection, expression of foreign genes, and highly efficient trans-complementation to rescue virus replicon particles (VRPs). The noncytopathic characteristics and the absence of preexisting immunity to BuPV in human populations and livestock also provide a significant benefit for a possible use, e.g., as a vector vaccine platform.


Subject(s)
Pestivirus Infections/virology , Pestivirus/physiology , RNA, Viral , Viral Envelope Proteins/metabolism , Virus Replication , Gene Deletion , Gene Expression , Genes, Reporter , Genetic Engineering , Host-Pathogen Interactions , Pestivirus Infections/immunology , Replicon , Viral Envelope Proteins/genetics , Virion , Virus Assembly
8.
Viruses ; 11(11)2019 10 23.
Article in English | MEDLINE | ID: mdl-31652833

ABSTRACT

The novel pestivirus species known as lateral-shaking inducing neuro-degenerative agent (LINDA) virus emerged in 2015 in a piglet-producing farm in Austria. Affected piglets showed strong congenital tremor as a result of severe lesions in the central nervous system. Here, we report the results of a controlled animal infection experiment. Post-weaning piglets were infected with LINDA to determine the susceptibility of pigs, the clinical consequences of infection and the humoral immune response against LINDA. No clinically overt disease signs were observed in the piglets. Viremia was hardly detectable, but LINDA was present in the spleen and several lymphatic organs until the end of the experiment on day 28 post-infection. Oronasal virus shedding together with the infection of one sentinel animal provided additional evidence for the successful replication and spread of LINDA in the piglets. Starting on day 14 post-infection, all infected animals showed a strong humoral immune response with high titers of neutralizing antibodies against LINDA. No cross-neutralizing activity of these sera with other pestiviral species was observed. According to these data, following postnatal infection, LINDA is a rather benign virus that can be controlled by the pig's immune system. However, further studies are needed to investigate the effects of LINDA on the fetus after intrauterine infection.


Subject(s)
Pestivirus Infections/veterinary , Pestivirus/physiology , Swine Diseases/virology , Animals , Antibodies, Neutralizing/blood , Antibodies, Viral/blood , Female , Immunity, Humoral , Male , Pestivirus/genetics , Pestivirus Infections/immunology , Pestivirus Infections/pathology , Pestivirus Infections/virology , Spleen/immunology , Spleen/pathology , Swine , Swine Diseases/blood , Swine Diseases/immunology , Swine Diseases/pathology , Weaning
9.
Nucleic Acids Res ; 45(22): 13016-13028, 2017 Dec 15.
Article in English | MEDLINE | ID: mdl-29069411

ABSTRACT

Viral internal ribosomes entry site (IRES) elements coordinate the recruitment of the host translation machinery to direct the initiation of viral protein synthesis. Within hepatitis C virus (HCV)-like IRES elements, the sub-domain IIId(1) is crucial for recruiting the 40S ribosomal subunit. However, some HCV-like IRES elements possess an additional sub-domain, termed IIId2, whose function remains unclear. Herein, we show that IIId2 sub-domains from divergent viruses have different functions. The IIId2 sub-domain present in Seneca valley virus (SVV), a picornavirus, is dispensable for IRES activity, while the IIId2 sub-domains of two pestiviruses, classical swine fever virus (CSFV) and border disease virus (BDV), are required for 80S ribosomes assembly and IRES activity. Unlike in SVV, the deletion of IIId2 from the CSFV and BDV IRES elements impairs initiation of translation by inhibiting the assembly of 80S ribosomes. Consequently, this negatively affects the replication of CSFV and BDV. Finally, we show that the SVV IIId2 sub-domain is required for efficient viral RNA synthesis and growth of SVV, but not for IRES function. This study sheds light on the molecular evolution of viruses by clearly demonstrating that conserved RNA structures, within distantly related RNA viruses, have acquired different roles in the virus life cycles.


Subject(s)
Internal Ribosome Entry Sites/genetics , Pestivirus/genetics , Picornaviridae/genetics , RNA, Viral/genetics , Animals , Base Sequence , Binding Sites/genetics , Border disease virus/genetics , Border disease virus/physiology , Cell Line , Classical Swine Fever Virus/genetics , Classical Swine Fever Virus/physiology , HEK293 Cells , Host-Pathogen Interactions , Humans , Nucleic Acid Conformation , Pestivirus/physiology , Picornaviridae/physiology , RNA, Viral/chemistry , RNA, Viral/metabolism , Ribosomes/genetics , Ribosomes/metabolism , Swine
10.
Transbound Emerg Dis ; 64(6): 1645-1649, 2017 Dec.
Article in English | MEDLINE | ID: mdl-28941140

ABSTRACT

This study aimed to provide information regarding viral pathogenesis and molecular epidemiology linked with recently reported atypical porcine pestivirus (APPV) strains and to determine the circulation of APPV in Spain from 1997 to 2016. Two-day-old piglets with moderate-severe congenital tremor (CT) from a Spanish farm were received for diagnostic purposes. Sera, nasal and rectal swabs and tissue samples were collected. qRT-PCR was performed in these samples, and a retrospective study to detect APPV RNA was carried out using a serum collection from 1997 to 2016. APPV genome was identified with high and moderate RNA loads in different tissues of the CT affected pigs. High APPV RNA load was detected in lymphoid organs, suggesting that these constitute a target for APPV replication. In 89 of the 642 retrospectively analysed samples (13.9%), APPV genome was detected. CT cases were related to the presence of APPV in viraemic piglets below 1 week of age, in which the viral RNA load was the highest. A considerable number of animals between 4 and 14 weeks of age and some 1-week-old piglets were viraemic in the absence of CT, which can act as carriers of the virus. The relative risk of APPV and CT was 8.5 (CI 95% 5.8-12.5). Thus, our data show that APPV infection is epidemiologically related to CT. Phylogenetic analysis from 1615 NS2-3 nucleotides showed only one defined APPV clade, grouping the most phylogenetically related strains from Europe and China. Of this clade, there are other strains from Europe, USA and China. This data confirm the high APPV genetic diversity, not being able to cluster this virus according to the geographic area. Our result showed that APPV has been circulating in Spain at least since 1997, being the earliest date of detection of this virus worldwide and suggesting that APPV may be widespread.


Subject(s)
Pestivirus Infections/veterinary , Pestivirus/physiology , Swine Diseases/epidemiology , Viral Load/veterinary , Animals , Pestivirus/classification , Pestivirus Infections/epidemiology , Pestivirus Infections/virology , Phylogeny , RNA, Viral/analysis , Retrospective Studies , Sequence Analysis, RNA/veterinary , Spain/epidemiology , Sus scrofa , Swine , Swine Diseases/virology , Viremia/epidemiology , Viremia/veterinary , Viremia/virology
11.
J Gen Virol ; 98(8): 2106-2112, 2017 Aug.
Article in English | MEDLINE | ID: mdl-28786787

ABSTRACT

We propose the creation of seven new species in the genus Pestivirus (family Flaviviridae) in addition to the four existing species, and naming species in a host-independent manner using the format Pestivirus X. Only the virus species names would change; virus isolates would still be referred to by their original names. The original species would be re-designated as Pestivirus A (original designation Bovine viral diarrhea virus 1), Pestivirus B (Bovine viral diarrhea virus 2), Pestivirus C (Classical swine fever virus) and Pestivirus D (Border disease virus). The seven new species (and example isolates) would be Pestivirus E (pronghorn pestivirus), Pestivirus F (Bungowannah virus), Pestivirus G (giraffe pestivirus), Pestivirus H (Hobi-like pestivirus), Pestivirus I (Aydin-like pestivirus), Pestivirus J (rat pestivirus) and Pestivirus K (atypical porcine pestivirus). A bat-derived virus and pestiviruses identified from sheep and goat (Tunisian sheep pestiviruses), which lack complete coding region sequences, may represent two additional species.


Subject(s)
Pestivirus Infections/veterinary , Pestivirus/classification , Pestivirus/isolation & purification , Animals , Cattle , Goats , Pestivirus/genetics , Pestivirus/physiology , Pestivirus Infections/virology , Phylogeny , Rats , Sheep , Swine
12.
Theriogenology ; 97: 67-72, 2017 Jul 15.
Article in English | MEDLINE | ID: mdl-28583610

ABSTRACT

As production of in vitro (IVP) bovine embryos steadily increases, the sanitary risk associated with IVP embryos remains a concern. One of the greatest concerns is how BVDV may be transmitted through IVP embryos. The objective of this study was to evaluate the effects caused by BVDV-1, BVDV-2 and Hobi-like virus exposure during in vitro maturation on embryo development and viral infection. Abittior-derived oocytes were randomly assigned for in vitro maturation with serial concentrations of BVDV-1 (3.12 × 102 - 2.50 × 103 TCID50/100 µL), BVDV-2 (6.25 × 101 - 5.20 × 102 TCID50/100 µL) or Hobi-like virus (1.90 × 102 - 1.58 × 103 TCID50/100 µL) for 22-24 h. After maturation, oocytes were fertilized and embryo cultured following standard in vitro procedures. Embryo development was evaluated and percentage of respective, positive BVDV degenerated and viable embryos were evaluated by RT-qPCR. No concentration of BVDV-1 altered embryo development as measured by cleavage and blastocyst rates, compared to negative control group. However 100% of degenerated embryos and 50-100% of viable embryos tested positive for BVDV-1, depending on the viral concentration. BVDV-2 exposed oocytes had higher cleavage rates than the negative control group (60.2-64.1% vs 49.8%; P = 0.003-0.032). However, no difference was detected for blastocyst rates. In aadition, 100% of degenerated embryos and 20-50% of viable embryos tested positive for BVDV-2. Hobi-like virus treated oocytes had reduced cleavage rates for the three highest viral concentrations (33.3-38.0% vs 49.8% for negative controls; P ≤ 0.001-0.014). Blastocyst rates were only reduced in the 7.9 × 102 Hobi-like virus concentration (6.9 ± 0.9% vs 15.1 ± 1.6%; P = 0.009), when calculated by oocyte number. 50-80% of degenerated embryos tested positive for Hobi-like virus. No viable embryos from the Hobi-like virus treated oocytes tested positive. These results suggest that IVP embryos from BVDV-1 and -2 infected oocytes develop normally, but carry the virus. However, Hobi-like virus infected oocytes had reduced cleavage and cause pre-implantation embryo loss, but viable embryos did not carry the virus.


Subject(s)
Cattle , Embryonic Development/physiology , Oocytes/physiology , Oocytes/virology , Pestivirus Infections/embryology , Pestivirus/physiology , Animals , Diarrhea Virus 1, Bovine Viral/physiology , Diarrhea Virus 2, Bovine Viral/physiology , Embryo Culture Techniques/veterinary , Fertilization in Vitro/veterinary
14.
PLoS Pathog ; 13(2): e1006134, 2017 02.
Article in English | MEDLINE | ID: mdl-28151973

ABSTRACT

The viruses of the family Flaviviridae possess a positive-strand RNA genome and express a single polyprotein which is processed into functional proteins. Initially, the nonstructural (NS) proteins, which are not part of the virions, form complexes capable of genome replication. Later on, the NS proteins also play a critical role in virion formation. The molecular basis to understand how the same proteins form different complexes required in both processes is so far unknown. For pestiviruses, uncleaved NS2-3 is essential for virion morphogenesis while NS3 is required for RNA replication but is not functional in viral assembly. Recently, we identified two gain of function mutations, located in the C-terminal region of NS2 and in the serine protease domain of NS3 (NS3 residue 132), which allow NS2 and NS3 to substitute for uncleaved NS2-3 in particle assembly. We report here the crystal structure of pestivirus NS3-4A showing that the NS3 residue 132 maps to a surface patch interacting with the C-terminal region of NS4A (NS4A-kink region) suggesting a critical role of this contact in virion morphogenesis. We show that destabilization of this interaction, either by alanine exchanges at this NS3/4A-kink interface, led to a gain of function of the NS3/4A complex in particle formation. In contrast, RNA replication and thus replicase assembly requires a stable association between NS3 and the NS4A-kink region. Thus, we propose that two variants of NS3/4A complexes exist in pestivirus infected cells each representing a basic building block required for either RNA replication or virion morphogenesis. This could be further corroborated by trans-complementation studies with a replication-defective NS3/4A double mutant that was still functional in viral assembly. Our observations illustrate the presence of alternative overlapping surfaces providing different contacts between the same proteins, allowing the switch from RNA replication to virion formation.


Subject(s)
Pestivirus/physiology , Viral Nonstructural Proteins/metabolism , Virion/physiology , Virus Replication/physiology , Animals , Blotting, Western , Cell Line , Crystallography, X-Ray , Dogs , Fluorescent Antibody Technique , Morphogenesis , Mutagenesis, Site-Directed , Pestivirus/chemistry , RNA Helicases/chemistry , RNA Helicases/metabolism , RNA, Viral , Serine Endopeptidases/chemistry , Serine Endopeptidases/metabolism , Viral Nonstructural Proteins/chemistry , Virus Assembly
15.
J Agric Food Chem ; 64(29): 5941-50, 2016 Jul 27.
Article in English | MEDLINE | ID: mdl-27355875

ABSTRACT

Bovine viral diarrhea virus (BVDV) infections are prevailing in cattle populations on a worldwide scale. The BVDV RNA-dependent RNA polymerase (RdRp), as a promising target for new anti-BVDV drug development, has attracted increasing attention. To explore the interaction mechanism of 65 benzimidazole scaffold-based derivatives as BVDV inhibitors, presently, a computational study was performed based on a combination of 3D-QSAR, molecular docking, and molecular dynamics (MD) simulations. The resultant optimum CoMFA and CoMSIA models present proper reliabilities and strong predictive abilities (with Q(2) = 0. 64, R(2)ncv = 0.93, R(2)pred = 0.80 and Q(2) = 0. 65, R(2)ncv = 0.98, R(2)pred = 0.86, respectively). In addition, there was good concordance between these models, molecular docking, and MD results. Moreover, the MM-PBSA energy analysis reveals that the major driving force for ligand binding is the polar solvation contribution term. Hopefully, these models and the obtained findings could offer better understanding of the interaction mechanism of BVDV inhibitors as well as benefit the new discovery of more potent BVDV inhibitors.


Subject(s)
Antiviral Agents/chemistry , Benzimidazoles/chemistry , Diarrhea/veterinary , Pestivirus/drug effects , Animals , Antiviral Agents/pharmacology , Benzimidazoles/pharmacology , Cattle , Cattle Diseases/virology , Diarrhea/virology , Drug Design , Molecular Docking Simulation , Molecular Dynamics Simulation , Pestivirus/physiology , Pestivirus Infections/virology , Quantitative Structure-Activity Relationship
16.
Trop Anim Health Prod ; 48(5): 1021-7, 2016 Jun.
Article in English | MEDLINE | ID: mdl-27038195

ABSTRACT

The economic impact of abortions in ruminant breeders is one of the biggest problems in livestock. Of the infectious agents, viruses, especially herpesviruses and pestiviruses, are the most important causative agents of abortion in ruminants. In the present study, the role of herpesviruses (bovine herpesvirus-1 (BoHV-1), bovine herpesvirus-4 (BoHV-4)) and pestiviruses (bovine viral diarrhea virus (BVDV), border disease virus (BDV)) was investigated in cases of ruminant abortion between 2007 and 2015 in western Turkey. Out of 81 aborted fetal samples (60 calves, 19 lambs, and 2 kids), 42 were positive, which included 31 calves, 9 lambs, and 2 goats; 39 aborted fetal samples were negative for the pestivirus antigen ELISA. BoHV-1 antigen ELISA was positive in 3 cases which included 2 calves and 1 lamb; the remainder 78 cases were negative. Pestivirus and BoHV-1 were positive in 51.85 and 3.70 %, respectively, of the samples. According to PCR analysis, BoHV-4 was not encountered in any of the tested samples. In one of the calf fetus samples, both BVDV and BoHV-1 were positive; in one of the lamb fetus samples, BoHV-1 was positive. There was a much higher level of pestivirus antigen than the other viral agents evaluated in the study (p < 0.0001). The results of this study indicate that pestiviruses are a common viral cause of ruminant abortions in the examined area.


Subject(s)
Abortion, Veterinary/epidemiology , Cattle Diseases/epidemiology , Goat Diseases/epidemiology , Herpesviridae Infections/epidemiology , Pestivirus Infections/epidemiology , Sheep Diseases/epidemiology , Abortion, Veterinary/virology , Animals , Cattle , Cattle Diseases/virology , Enzyme-Linked Immunosorbent Assay/veterinary , Goat Diseases/virology , Goats , Herpesviridae/physiology , Herpesviridae Infections/veterinary , Herpesviridae Infections/virology , Pestivirus/physiology , Pestivirus Infections/veterinary , Pestivirus Infections/virology , Sheep , Sheep Diseases/virology , Sheep, Domestic , Turkey/epidemiology
17.
PLoS One ; 11(2): e0150104, 2016.
Article in English | MEDLINE | ID: mdl-26909691

ABSTRACT

Congenital tremors is a sporadic disease of neonatal pigs characterized by action-related repetitive myoclonus. A majority of outbreaks of congenital tremors have been attributed to an unidentified virus. The objectives of this project were to 1) detect potential pathogen(s) in samples from piglets with congenital tremors and 2) develop an infection model to reproduce disease. Using next-generation sequencing, a divergent lineage pestivirus was detected in piglets with congenital tremors. The virus was originally most closely related to a bat pestivirus but is now more closely related to a recently published novel porcine pestivirus provisionally named atypical porcine pestivirus. A quantitative real-time PCR detected the virus in samples from neonatal piglets with congenital tremors from two separate farms, but not in samples from unaffected piglets from the same farm. To fulfill the second objective, pregnant sows were inoculated with either serum containing the pestivirus or PBS (control) by intravenous and intranasal routes simultaneously with direct inoculation of fetal amniotic vesicles by ultrasound-guided surgical technique. Inoculations were performed at either 45 or 62 days of gestation. All sows inoculated with the novel pestivirus farrowed piglets affected with congenital tremors while PBS-inoculated control piglets were unaffected. Tremor severity for each piglet was scored from videos taken 0, 1 and 2 days post-farrowing. Tremor severity remained relatively constant from 0 to 2 days post-farrowing for a majority of piglets. The prevalence of congenital tremors in pestivirus-inoculated litters ranged from 57% (4 out of 7 affected piglets) to 100% (10 out of 10 affected piglets). The virus was consistently detected by PCR in tissues from piglets with congenital tremors but was not detected in control piglets. Samples positive by PCR in greater than 90% of piglets sampled included brainstem (37 out of 41), mesenteric lymph node (37 out of 41), tracheobronchial lymph node (37 out of 41), and whole blood (19 out of 20). Although the first description of congenital tremors was in 1922, this is the first reported reproduction of congenital tremors following experimental inoculation with a divergent lineage porcine pestivirus. Studies investigating disease mechanism, epidemiology, and diagnostic assay development are needed to better understand the pathophysiology of congenital tremors due to this pestivirus.


Subject(s)
Pestivirus/isolation & purification , Pestivirus/physiology , Swine Diseases/congenital , Swine Diseases/virology , Swine/virology , Tremor/congenital , Tremor/virology , Animals , Female , High-Throughput Nucleotide Sequencing , Pestivirus/genetics , Pregnancy , RNA, Viral/genetics
18.
Annu Rev Anim Biosci ; 2: 141-63, 2014 Feb.
Article in English | MEDLINE | ID: mdl-25384138

ABSTRACT

Pestiviruses cause economically important diseases among domestic ruminants and pigs, but they may also infect a wide spectrum of wild species of even-toed ungulates (Artiodactyla). Bovine viral diarrhea virus (BVDV) and Border disease virus of sheep infect their hosts either transiently or persistently. Cellular and humoral immunotolerance to the infecting strain is a unique feature of persistent infection (PI) by ruminant pestiviruses. Persistence, caused by transplacental infection early in fetal development, depends on virally encoded interferon antagonists that inactivate the host's innate immune response to the virus without globally interfering with its function against other viruses. At epidemiological equilibrium, approximately 1-2% of animals are PI. Successful BVDV control programs show that removal of PI animals results in viral extinction in the host population. The nucleotide sequences of ruminant pestiviruses change little during persistent infection. Nevertheless, they display large heterogeneity, pointing to a long history of virus-host coevolution in which avirulent strains are more successful.


Subject(s)
Livestock , Pestivirus Infections/veterinary , Pestivirus/physiology , Animals , Pestivirus/genetics , Pestivirus/pathogenicity , Pestivirus Infections/immunology , Pestivirus Infections/prevention & control , Pestivirus Infections/transmission , Pestivirus Infections/virology , Virulence
19.
J Gen Virol ; 95(Pt 10): 2216-2222, 2014 Oct.
Article in English | MEDLINE | ID: mdl-24973239

ABSTRACT

Bungowannah virus is the most divergent pestivirus, and both origin and reservoir host have not been identified so far. We therefore performed in vitro tropism studies, which showed that Bungowannah virus differs remarkably from other pestiviruses. Interestingly, cell lines of vervet monkey, mouse, human and even of bat origin were susceptible. This broad in vitro tropism was not observed for a chimeric bovine viral diarrhoea virus (BVDV) expressing all structural proteins of Bungowannah virus. The viral envelope was not sufficient to completely transfer the cell tropism of Bungowannah virus to another pestivirus, and viral RNA replication was either markedly reduced or not detectable in a number of different cell lines for the tested BVDV strain and the chimera. We therefore suggest that the replication machinery together with the viral envelope is responsible for the unique broad cell tropism of Bungowannah virus.


Subject(s)
Pestivirus/physiology , Viral Envelope Proteins/metabolism , Viral Tropism , Animals , Cell Line , Chiroptera , Chlorocebus aethiops , Diarrhea Viruses, Bovine Viral/genetics , Diarrhea Viruses, Bovine Viral/physiology , Humans , Mice , Pestivirus/genetics , Viral Envelope Proteins/genetics
20.
Virus Res ; 189: 147-57, 2014 Aug 30.
Article in English | MEDLINE | ID: mdl-24874197

ABSTRACT

Bovine viral diarrhoea virus (BVDV) is an economically important animal pathogen, which like other pestiviruses has similar molecular biological features to hepaciviruses, including human Hepatitis C virus. The pestivirus E2 glycoproteins are the major target for virus-neutralising antibodies, as well as playing a role in receptor binding and host range restriction. In this study, recombinant E2 glycoproteins (rE2) derived from three different pestivirus species were examined for their inhibitory effects on pestivirus infectivity in cell culture. Histidine-tagged rE2 glycoproteins of BVDV type 2 strain 178003, BVDV type 1 strain Oregon C24V and CSFV strain Alfort 187 were produced in Spodoptera frugiperda insect cells and purified under native conditions. The ability of rE2 glycoprotein to inhibit the infection of permissive cells by both homologous and heterologous virus was compared, revealing that the inhibitory effects of rE2 glycoproteins correlated with the predicted similarity of the E2 structures in the recombinant protein and the test virus. This result suggests that the sequence and structure of E2 are likely to be involved in the host specificity of pestiviruses at their point of uptake into cells.


Subject(s)
Glycoproteins/metabolism , Pestivirus/drug effects , Pestivirus/physiology , Recombinant Proteins/metabolism , Viral Envelope Proteins/metabolism , Virus Attachment/drug effects , Animals , Glycoproteins/genetics , Recombinant Proteins/genetics , Sf9 Cells , Spodoptera , Viral Envelope Proteins/genetics
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