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1.
Adv Exp Med Biol ; 1407: 265-277, 2023.
Article in English | MEDLINE | ID: mdl-36920702

ABSTRACT

The genus Bandavirus, belonging to family Phenuiviridae, order Bunyavirales, consists of eight tick-borne bunyaviruses. The Dabie bandavirus, formerly known as severe fever with thrombocytopenia virus (SFTSV), belongs to the genus Bandavirus. This emerging pathogen was first identified in central China in 2009. In recent years, the disease has been reported to cause several outbreaks in eastern Asia areas, including China, Japan, Korea, and Vietnam. Tick-to-human transmission is the main route of infection in humans, and transmission via the contact of body fluids from person-to-person was also reported. Despite its high fatality rate, there is currently no vaccine or antiviral therapy available. The therapeutic efficacies of several antiviral agents against Dabie bandavirus are still being evaluated. However, the virus is a potent pathogen with high biosafety experimental conditions. Therefore, replication-incompetent pseudotyped viruses play an important role. In this chapter, we succinctly summarize the basic features concerning Dabie bandavirus, including virion structure, genome characteristics, especially the characteristics of glycoprotein, and probable pathogenic mechanism. And, we put an important part in expounding the construction of pseudoviruses and its application.


Subject(s)
Phlebovirus , RNA Viruses , Humans , Phlebovirus/chemistry , Phlebovirus/genetics , Viral Pseudotyping , Glycoproteins/chemistry , Antiviral Agents
2.
Sci Adv ; 8(19): eabj6894, 2022 05 13.
Article in English | MEDLINE | ID: mdl-35544562

ABSTRACT

Endogenous viral elements (EVEs), accounting for 15% of our genome, serve as a genetic reservoir from which new genes can emerge. Nematode EVEs are particularly diverse and informative of virus evolution. We identify Atlas virus-an intact retrovirus-like EVE in the human hookworm Ancylostoma ceylanicum, with an envelope protein genetically related to GN-GC glycoproteins from the family Phenuiviridae. A cryo-EM structure of Atlas GC reveals a class II viral membrane fusion protein fold not previously seen in retroviruses. Atlas GC has the structural hallmarks of an active fusogen. Atlas GC trimers insert into membranes with endosomal lipid compositions and low pH. When expressed on the plasma membrane, Atlas GC has cell-cell fusion activity. With its preserved biological activities, Atlas GC has the potential to acquire a cellular function. Our work reveals structural plasticity in reverse-transcribing RNA viruses.


Subject(s)
Phlebovirus , RNA Viruses , Ancylostomatoidea/metabolism , Animals , Humans , Phlebovirus/chemistry , Phlebovirus/genetics , Phlebovirus/metabolism , Viral Envelope Proteins/metabolism , Viral Fusion Proteins/chemistry , Viral Fusion Proteins/metabolism , Virus Internalization
3.
Antiviral Res ; 194: 105164, 2021 10.
Article in English | MEDLINE | ID: mdl-34411654

ABSTRACT

Severe fever with thrombocytopenia syndrome (SFTS) is an acute infectious disease caused by a novel phlebovirus (SFTSV), characterized by fever, thrombocytopenia and leukocytopenia which lead to multiple organ failure with high mortality in severe cases. The SFTSV has spread rapidly in recent years and posed a serious threat to public health in endemic areas. However, specific antiviral therapeutics for SFTSV infection are rare. In this study, we demonstrated that two peptides, SGc1 and SGc8, derived from a hydrophobic region of the SFTSV glycoprotein Gc, could potently inhibit SFTSV replication in a dose-dependent manner without apparent cytotoxicity in various cell lines and with low immunogenicity and good stability. The IC50 (50% inhibition concentration) values for both peptides to inhibit 2 MOI of SFTSV infection were below 10 µM in L02, Vero and BHK21 cells. Mechanistically, SGc1 and SGc8 mainly inhibited viral entry at the early stage of the viral infection. Inhibition of SFTSV replication was specific by both peptides because no inhibitory effect was shown against other viruses including Zika virus and Enterovirus A71. Taken together, our results suggested that viral glycoprotein-derived SGc1 and SGc8 peptides have antiviral potential and warrant further assessment as an SFTSV-specific therapeutic.


Subject(s)
Antiviral Agents/pharmacology , Glycoproteins/pharmacology , Peptides/pharmacology , Phlebovirus/chemistry , Phlebovirus/drug effects , Viral Nonstructural Proteins/pharmacology , Animals , Cell Line , Chlorocebus aethiops , Cricetinae , Enterovirus A, Human/drug effects , Female , Glycoproteins/chemistry , Inhibitory Concentration 50 , Mice , Peptides/chemistry , Phlebovirus/genetics , Severe Fever with Thrombocytopenia Syndrome/drug therapy , Vero Cells , Virus Internalization/drug effects , Virus Replication/drug effects , Zika Virus/drug effects
4.
Protein Expr Purif ; 184: 105892, 2021 08.
Article in English | MEDLINE | ID: mdl-33895264

ABSTRACT

Severe fever with thrombocytopenia syndrome virus (SFTSV) is newly discovered virus which is the member of the order Bunyavirales, family phenuiviridae, phlebovirus genus. Its genome is composed of 3 segments of negative-sense RNA L, M and S. NSs is a non structure protein encoded by S segment which is important for viral replication and virulence. NSs protein of SFTSV is only involved in the regulation of host innate immune responses and suppression of IFN-promoter activities. So, the exact functions of this protein need to be studied deeply. To understand the exact role of NSs from SFTSV in viral replication and host immune response, a qualified antibody against this protein is required. In this study, NSs gene of SFTSV, was cloned into a bacterial expression vector (pGEX-6P-1) and the recombinant plasmid was transformed into Escherichia coli BL21 (DE3) cells. The SFTSV NSs fusion protein was purified using Glutathione Sepharose 4B and utilized as an antigen to immunize rabbits and obtain an anti-SFTSV NSs polyclonal antibody. Proper expression of the fusion protein and polyclonal antibody specificity were confirmed by western blotting and immunofluorescence analyses. The polyclonal antibody recognized NSs from SFTSV specifically. This is the first report that NSs can form viroplasm-like structures not only in infected cells but also in transfected cells with NSs plasmids. This polyclonal antibody will be useful for future studies of NSs functions.


Subject(s)
Antibodies, Viral/immunology , Phlebovirus , Viral Nonstructural Proteins , Animals , Chlorocebus aethiops , Humans , Phlebovirus/chemistry , Phlebovirus/genetics , Phlebovirus/immunology , Rabbits , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/immunology , Recombinant Proteins/pharmacology , Vero Cells , Viral Nonstructural Proteins/chemistry , Viral Nonstructural Proteins/genetics , Viral Nonstructural Proteins/immunology , Viral Nonstructural Proteins/pharmacology
5.
Anal Chem ; 91(21): 13772-13779, 2019 11 05.
Article in English | MEDLINE | ID: mdl-31602980

ABSTRACT

Most prevalent infectious diseases worldwide are caused by mediators such as insects and characterized by high mortality and morbidity, thereby creating a global public health concern. Therefore, a sensitive, selective detection platform for diagnosing diseases in the early stages of infection is needed to prevent disease spread and to protect public health. Here, we developed novel DNA aptamers specific to the nucleocapsid protein (NP) of the severe fever with thrombocytopenia syndrome (SFTS) virus and synthesized ssDNA-binding protein-conjugated liposomes encapsulated with horseradish peroxidase (HRP) for application in a simple and universal platform. This platform achieved highly sensitive detection of the NP by measuring the colorimetric signal following lysis of the HRP encapsulated liposomes, mediated by a mixture of 3,3',5,5'-tetramethylbenzidine and H2O2 solution. The limit of detection was 0.009 ng·mL-1, and NP was successfully detected in diluted human serum with a high recovery rate. Moreover, this method was specific and did not exhibit cross-reactivity among NPs of other virus types. These results demonstrated the efficacy of the proposed method as a highly sensitive, specific, and universal diagnostic tool for potential application in monitoring of the early stages of infectious diseases.


Subject(s)
Aptamers, Nucleotide/pharmacology , Nucleocapsid Proteins/antagonists & inhibitors , Phlebotomus Fever/diagnosis , Phlebovirus/chemistry , Aptamers, Nucleotide/therapeutic use , Colorimetry/methods , Humans , Hydrogen Peroxide/chemistry , Limit of Detection , Liposomes/chemistry , Nucleocapsid Proteins/analysis , Nucleocapsid Proteins/blood , Phlebotomus Fever/virology , Sensitivity and Specificity
6.
Virology ; 520: 11-20, 2018 07.
Article in English | MEDLINE | ID: mdl-29754008

ABSTRACT

Severe fever with thrombocytopenia syndrome virus (SFTSV) infection typically causes acute fever, thrombocytopenia and leucopenia, presenting with a high case fatality rate. The pathogenesis of SFTSV infection, however, is not well described. It was hypothesized that endothelial dysfunction might play part in the disease process. In current study, we retrospectively analyzed the clinical manifestations among a large group of confirmed SFTS cases and found evidence of plasma leakage and vascular endothelial injury. Then we established a SFTSV infection cell model and determined the infectivity and stimulation of SFTSV on vascular endothelial cells in vitro. The hyperpermeability of endothelial cells directly induced by SFTSV was confirmed by electrical resistance and dextran diffusion assay. The virus induced alterations of cell junctions and cytoskeleton was also revealed. It's suggested that vascular endothelial cell injury and barrier function damage were induced after SFTSV infection, which is a vital but neglected pathogenesis of SFTS.


Subject(s)
Bunyaviridae Infections/physiopathology , Bunyaviridae Infections/virology , Endothelium, Vascular/pathology , Phlebovirus , Thrombocytopenia/virology , Bunyaviridae Infections/mortality , Capillary Permeability , Cohort Studies , Cytokines/metabolism , Endothelium, Vascular/virology , Fever , Humans , Inflammation , Phlebovirus/chemistry , Phlebovirus/classification , Phlebovirus/genetics , Phlebovirus/isolation & purification , Retrospective Studies
7.
J Virol ; 92(1)2018 01 01.
Article in English | MEDLINE | ID: mdl-29070692

ABSTRACT

Heartland virus (HRTV) is an emerging human pathogen that belongs to the newly defined family Phenuiviridae, order Bunyavirales Gn and Gc are two viral surface glycoproteins encoded by the M segment and are required for early events during infection. HRTV delivers its genome into the cytoplasm by fusion of the viral envelope and endosomal membranes under low-pH conditions. Here, we describe the crystal structure of HRTV Gc in its postfusion conformation. The structure shows that Gc displays a typical class II fusion protein conformation, and the overall structure is identical to severe fever with thrombocytopenia syndrome virus (SFTSV) Gc, which also belongs to the Phenuiviridae family. However, our structural analysis indicates that the hantavirus Gc presents distinct features in the aspects of subdomain orientation, N-linked glycosylation, the interaction pattern between protomers, and the fusion loop conformation. This suggests their family-specific subunit arrangement during the fusogenic process and supports the recent taxonomic revision of bunyaviruses. Our results provide insights into the comprehensive comparison of class II membrane fusion proteins in two bunyavirus families, yielding valuable information for treatments against these human pathogens.IMPORTANCE HRTV is an insect-borne virus found in America that can infect humans. It belongs to the newly defined family Phenuiviridae, order Bunyavirales HRTV contains three single-stranded RNA segments (L, M, and S). The M segment of the virus encodes a polyprotein precursor that is cleaved into two glycoproteins, Gn and Gc. Gc is a fusion protein facilitating virus entry into host cells. Here, we report the crystal structure of the HRTV Gc protein. The structure displays a typical class II fusion protein conformation. Comparison of HRTV Gc with a recently solved structure of another bunyavirus Gc revealed that these Gc structures display a newly defined family specificity, supporting the recent International Committee on Taxonomy of Viruses reclassification of the bunyaviruses. Our results expand the knowledge of bunyavirus fusion proteins and help us to understand bunyavirus characterizations. This study provides useful information to improve protection against and therapies for bunyavirus infections.


Subject(s)
Glycoproteins/chemistry , Phlebovirus/chemistry , RNA Viruses/chemistry , Viral Envelope Proteins/chemistry , Viral Fusion Proteins/chemistry , Bunyaviridae/chemistry , Crystallization , Crystallography, X-Ray , Glycosylation , Orthohantavirus/chemistry , Orthohantavirus/classification , Phlebovirus/classification , Phlebovirus/genetics , Protein Conformation , Protein Domains , RNA Viruses/classification , RNA Viruses/genetics , Viral Fusion Proteins/metabolism , Virus Internalization
8.
Proc Natl Acad Sci U S A ; 113(26): 7154-9, 2016 06 28.
Article in English | MEDLINE | ID: mdl-27325770

ABSTRACT

An emergent viral pathogen termed severe fever with thrombocytopenia syndrome virus (SFTSV) is responsible for thousands of clinical cases and associated fatalities in China, Japan, and South Korea. Akin to other phleboviruses, SFTSV relies on a viral glycoprotein, Gc, to catalyze the merger of endosomal host and viral membranes during cell entry. Here, we describe the postfusion structure of SFTSV Gc, revealing that the molecular transformations the phleboviral Gc undergoes upon host cell entry are conserved with otherwise unrelated alpha- and flaviviruses. By comparison of SFTSV Gc with that of the prefusion structure of the related Rift Valley fever virus, we show that these changes involve refolding of the protein into a trimeric state. Reverse genetics and rescue of site-directed histidine mutants enabled localization of histidines likely to be important for triggering this pH-dependent process. These data provide structural and functional evidence that the mechanism of phlebovirus-host cell fusion is conserved among genetically and patho-physiologically distinct viral pathogens.


Subject(s)
Phlebotomus Fever/virology , Phlebovirus/metabolism , Viral Envelope Proteins/chemistry , Viral Envelope Proteins/metabolism , Amino Acid Sequence , Humans , Phlebovirus/chemistry , Phlebovirus/genetics , Protein Conformation , Sequence Alignment , Viral Envelope Proteins/genetics , Virus Internalization
9.
J Virol ; 90(11): 5292-5301, 2016 06 01.
Article in English | MEDLINE | ID: mdl-26984731

ABSTRACT

UNLABELLED: Severe fever with thrombocytopenia syndrome (SFTS) is an emerging hemorrhagic fever with a high case fatality rate caused by SFTS virus (SFTSV). Effective vaccines and specific therapies for SFTS are urgently sought, and investigation into virus-host cell interactions is expected to contribute to the development of antiviral strategies. In this study, we have developed a pseudotype vesicular stomatitis virus (VSV) bearing the unmodified Gn/Gc glycoproteins (GPs) of SFTSV (SFTSVpv). We have analyzed the host cell entry of this pseudotype virus and native SFTSV. Both SFTSVpv and SFTSV exhibited high infectivity in various mammalian cell lines. The use of lysosomotropic agents indicated that virus entry occurred via pH-dependent endocytosis. SFTSVpv and SFTSV infectivity was neutralized by serial dilutions of convalescent-phase patient sera. Entry of SFTSVpv and growth of SFTSV were increased in Raji cells expressing not only the C-type lectin dendritic cell-specific intercellular adhesion molecule 3-grabbing nonintegrin (DC-SIGN) but also DC-SIGN-related (DC-SIGNR) and liver and lymph node sinusoidal endothelial cell C-type lectin (LSECtin). 25-Hydroxycholesterol (25HC), a soluble oxysterol metabolite, inhibited the cell entry of SFTSVpv and the membrane fusion of SFTSV. These results indicate that pH-dependent endocytosis of SFTSVpv and SFTSV is enhanced by attachment to certain C-type lectins. SFTSVpv is an appropriate model for the investigation of SFTSV-GP-mediated cell entry and virus neutralization at lower biosafety levels. Furthermore, 25HC may represent a potential antiviral agent against SFTS. IMPORTANCE: SFTSV is a recently discovered bunyavirus associated with SFTS, a viral hemorrhagic fever with a high case fatality rate endemic to China, South Korea, and Japan. Because little is known about the characteristics of the envelope protein and entry mechanisms of SFTSV, further studies will be required for the development of a vaccine or effective therapies. In this study, we investigated the mechanism of SFTSV cell entry using SFTSVpv and the native virus. SFTSV can grow in nonsusceptible cell lines in the presence of certain C-type lectins. Moreover, 25HC, an oxysterol metabolite, may represent a potential therapeutic inhibitor of SFTSV infection.


Subject(s)
Glycoproteins/metabolism , Phlebovirus/physiology , Thrombocytopenia/virology , Vesicular stomatitis Indiana virus/genetics , Vesicular stomatitis Indiana virus/physiology , Viral Envelope Proteins/metabolism , Virus Internalization , Animals , Cell Adhesion Molecules/metabolism , Cell Line , China , Endocytosis , Glycoproteins/chemistry , Humans , Hydrogen-Ion Concentration , Hydroxycholesterols/pharmacology , Lectins, C-Type/metabolism , Neutralization Tests , Phlebotomus Fever/virology , Phlebovirus/chemistry , Receptors, Cell Surface/metabolism , Vesicular stomatitis Indiana virus/drug effects , Vesicular stomatitis Indiana virus/growth & development
10.
J Biol Chem ; 291(12): 6412-22, 2016 Mar 18.
Article in English | MEDLINE | ID: mdl-26811337

ABSTRACT

Many phleboviruses (family Bunyaviridae) are emerging as medically important viruses. These viruses enter target cells by endocytosis and low pH-dependent membrane fusion in late endosomes. However, the necessary and sufficient factors for fusion have not been fully characterized. We have studied the minimal fusion requirements of a prototypic phlebovirus, Uukuniemi virus, in an in vitro virus-liposome assay. We show that efficient lipid mixing between viral and liposome membranes requires close to physiological temperatures and phospholipids with negatively charged headgroups, such as the late endosomal phospholipid bis(monoacylglycero)phosphate. We further demonstrate that bis(monoacylglycero)phosphate increases Uukuniemi virus fusion beyond the lipid mixing stage. By using electron cryotomography of viral particles in the presence or absence of liposomes, we observed that the conformation of phlebovirus glycoprotein capsomers changes from the native conformation toward a more elongated conformation at a fusion permissive pH. Our results suggest a rationale for phlebovirus entry in late endosomes.


Subject(s)
Liposomes/chemistry , Lysophospholipids/chemistry , Monoglycerides/chemistry , Phlebovirus/chemistry , Virus Internalization , Animals , Cell Line , Cricetinae , Glycoproteins/physiology , Hydrogen-Ion Concentration , Phlebovirus/physiology , Viral Proteins/physiology
11.
Bing Du Xue Bao ; 32(5): 597-602, 2016 09.
Article in Chinese | MEDLINE | ID: mdl-30001582

ABSTRACT

In order to identify immunodominant linear B cell epitopes in the nucleocapsid protein N of severe fever with thrombocytopenia syndrome virus(SFTSV),bioinformatics programs were used to analyze antigenicity, hydrophilicity and surface probability of the amino acid sequence and predict possible linear B cell epitopes. PyMOL software was used to analyze the distribution of linear B cell epitopes in nucleocapsid protein N based on its crystal structure. Corresponding peptides were synthesized and examined in peptide enzyme-linked immunosorbent assay(Peptide-ELISA)individually to check whether they reacted with sera from SFTSV-infected patients. As a result, a total of six potential linear B cell epitopes were predicted as the following: A(40-KKLKETGGDDWVKDTK-55), B(71-ASGKMSNSGSKRL-83), C(94-ERAETRL-100),D(135-LKVENYPP-142),E(157-GVSEATT-163)and F(184-KMRGASKTEVYNSFRDP-200).All epitopes were located on the surface of the nucleocapsid protein N and contained flexible loops. Each of the six synthetic peptides reacted positively with sera from SFTSV-infected patients and were identified as immunodominant linear B cell epitopes. Linear regression analysis showed a positive correlation between each peptide-ELISA and commercialized N protein-based EIA. In this study, immunodominant linear B cell epitopes from the nucleocapsid protein N of SFTSV were successfully predicted and confirmed. These findings may help to establish the molecule basis of specific antigenicity and disease diagnosis.


Subject(s)
Bunyaviridae Infections/immunology , Epitopes, B-Lymphocyte/immunology , Immunodominant Epitopes/immunology , Nucleocapsid Proteins/chemistry , Nucleocapsid Proteins/immunology , Phlebovirus/immunology , Bunyaviridae Infections/virology , Epitope Mapping , Epitopes, B-Lymphocyte/chemistry , Epitopes, B-Lymphocyte/genetics , Humans , Immunodominant Epitopes/chemistry , Immunodominant Epitopes/genetics , Nucleocapsid Proteins/genetics , Phlebovirus/chemistry , Phlebovirus/genetics , Phlebovirus/isolation & purification
12.
J Virol ; 89(6): 3026-37, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25552716

ABSTRACT

UNLABELLED: Severe fever with thrombocytopenia syndrome virus (SFTSV) is an emerging tick-borne pathogen that was first reported in China in 2009. Phylogenetic analysis of the viral genome showed that SFTS virus represents a new lineage within the Phlebovirus genus, distinct from the existing sandfly fever and Uukuniemi virus groups, in the family Bunyaviridae. SFTS disease is characterized by gastrointestinal symptoms, chills, joint pain, myalgia, thrombocytopenia, leukocytopenia, and some hemorrhagic manifestations with a case fatality rate of about 2 to 15%. Here we report the development of reverse genetics systems to study STFSV replication and pathogenesis. We developed and optimized functional T7 polymerase-based M- and S-segment minigenome assays, which revealed errors in the published terminal sequences of the S segment of the Hubei 29 strain of SFTSV. We then generated recombinant viruses from cloned cDNAs prepared to the antigenomic RNAs both of the minimally passaged virus (HB29) and of a cell culture-adapted strain designated HB29pp. The growth properties, pattern of viral protein synthesis, and subcellular localization of viral N and NSs proteins of wild-type HB29pp (wtHB29pp) and recombinant HB29pp viruses were indistinguishable. We also show that the viruses fail to shut off host cell polypeptide production. The robust reverse genetics system described will be a valuable tool for the design of therapeutics and the development of killed and attenuated vaccines against this important emerging pathogen. IMPORTANCE: SFTSV and related tick-borne phleboviruses such as Heartland virus are emerging viruses shown to cause severe disease in humans in the Far East and the United States, respectively. Study of these novel pathogens would be facilitated by technology to manipulate these viruses in a laboratory setting using reverse genetics. Here, we report the generation of infectious SFTSV from cDNA clones and demonstrate that the behavior of recombinant viruses is similar to that of the wild type. This advance will allow for further dissection of the roles of each of the viral proteins in the context of virus infection, as well as help in the development of antiviral drugs and protective vaccines.


Subject(s)
Phlebotomus Fever/virology , Phlebovirus/genetics , Reverse Genetics/methods , Amino Acid Sequence , Base Sequence , China , Female , Genome, Viral , Humans , Middle Aged , Molecular Sequence Data , Phlebovirus/chemistry , Phlebovirus/metabolism , Sequence Alignment , Viral Proteins/chemistry , Viral Proteins/genetics , Viral Proteins/metabolism
13.
Uirusu ; 65(1): 7-16, 2015.
Article in Japanese | MEDLINE | ID: mdl-26923953

ABSTRACT

Severe fever with thrombocytopenia syndrome (SFTS) is an emerging tick-borne infectious disease caused by the SFTS virus (SFTSV), a novel phlebovirus reported to be endemic to China in 2011. In Japan, the first SFTS patient was identified during the autumn of 2012; since then, over 100 SFTS patients have been reported. The SFTSV has been identified throughout Japan over the past two years; however, SFTS patients are specifically localized to western Japan. The clinical symptoms of SFTS include fever, thrombocytopenia, leukocytopenia, gastrointestinal symptoms, and various other symptoms, including muscular symptoms, neurological abnormalities, and coagulopathy. SFTS is often accompanied by hemophagocytic syndrome. The histopathological findings are characterized by necrotizing lymphadenitis, with infiltration of the virus-infected cells to the local lymph nodes. Pathophysiological analyses of SFTS include studies regarding the kinetics of cytokine production and immune responses in patients with SFTS and in SFTSV-infection animal models. This article aimed to survey the history of SFTS in Japan and to review the clinical, epidemiological, and virological aspects of SFTS and SFTSV infection.


Subject(s)
Bunyaviridae Infections/virology , Phlebovirus , Adult , Aged , Aged, 80 and over , Animals , Bunyaviridae Infections/epidemiology , Bunyaviridae Infections/pathology , Bunyaviridae Infections/physiopathology , Disease Models, Animal , Humans , Insect Vectors/virology , Japan/epidemiology , Life Cycle Stages , Mice , Middle Aged , Phlebovirus/chemistry , Phlebovirus/genetics , Phlebovirus/pathogenicity , Severity of Illness Index , Ticks/growth & development , Ticks/virology , Young Adult
14.
J Gen Virol ; 94(Pt 4): 837-842, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23239568

ABSTRACT

Genomic and antigenic characterization of the Salehabad virus, a species of the genus Phlebovirus, and four other unclassified phleboviruses (Arbia, Adria, Arumowot and Odrenisrou) demonstrate a serological and genetic relation to one another and are distinct from the eight other recognized species within the genus Phlebovirus. We propose to incorporate these four unclassified viruses as part of the Salehabad species complex within the genus. The known geographical distribution for the members of this species group includes southern Europe, Central Asia and Africa.


Subject(s)
Antigens, Viral/analysis , Genome, Viral , Phlebovirus/chemistry , Phlebovirus/genetics , RNA, Viral/genetics , Sequence Analysis, DNA , Africa , Asia, Central , Cluster Analysis , Europe , Molecular Sequence Data , Phlebovirus/classification , Phlebovirus/isolation & purification , Phylogeography , Viruses, Unclassified
15.
Virus Res ; 167(1): 118-23, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22808531

ABSTRACT

The aim of this study was to evaluate the contribution of positively charged amino acid residues for the Uukuniemi virus (UUKV) N protein functionality. Based on phlebovirus nucleocapsid (N) protein alignments and 3D-structure predictions of UUKV N protein, 14 positively charged residues were chosen as targets for the mutagenesis. The impact of mutations to the N protein functionality was analyzed using minigenome-, virus-like particle-, and mammalian two-hybrid-assays. Seven of the mutations affected the functional competence in all three assays, while others had milder impact or no impact at all. In the 3D-model of UUKV N protein, five of the affected residues, R61, R64, R73, R98 and R115, were located either within or in close proximity to the central cavity that could potentially bind RNA.


Subject(s)
Mutation , Nucleocapsid Proteins/genetics , Uukuniemi virus/genetics , Amino Acid Sequence , Amino Acids/chemistry , Amino Acids/genetics , Amino Acids/metabolism , DNA Mutational Analysis , Molecular Sequence Data , Nucleocapsid Proteins/chemistry , Nucleocapsid Proteins/metabolism , Phlebovirus/chemistry , Phlebovirus/genetics , Phlebovirus/metabolism , Sequence Alignment , Uukuniemi virus/chemistry , Uukuniemi virus/metabolism
16.
PLoS Negl Trop Dis ; 5(1): e936, 2011 Jan 04.
Article in English | MEDLINE | ID: mdl-21245924

ABSTRACT

Nucleoproteins (NPs) encapsidate the Phlebovirus genomic (-)RNA. Upon recombinant expression, NPs tend to form heterogeneous oligomers impeding characterization of the encapsidation process through crystallographic studies. To overcome this problem, we set up a standard protocol in which production under both non-denaturing and denaturing/refolding conditions can be investigated and compared. The protocol was applied for three phlebovirus NPs, allowing an optimized production strategy for each of them. Remarkably, the Rift Valley fever virus NP was purified as a trimer under native conditions and yielded protein crystals whereas the refolded version could be purified as a dimer. Yields of trimeric Toscana virus NP were higher from denaturing than from native condition and lead to crystals. The production of Sandfly Fever Sicilian virus NP failed in both protocols. The comparative protocols described here should help in rationally choosing between denaturing or non-denaturing conditions, which would finally result in the most appropriate and relevant oligomerized protein species. The structure of the Rift Valley fever virus NP has been recently published using a refolded monomeric protein and we believe that the process we devised will contribute to shed light in the genome encapsidation process, a key stage in the viral life cycle.


Subject(s)
Nucleoproteins/metabolism , Phlebovirus/chemistry , Rift Valley fever virus/chemistry , Sandfly fever Naples virus/chemistry , Viral Proteins/metabolism , Crystallization , Nucleoproteins/chemistry , Nucleoproteins/isolation & purification , Protein Denaturation , Protein Folding , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Viral Proteins/chemistry , Viral Proteins/isolation & purification
17.
Arch Virol ; 144(10): 1947-60, 1999.
Article in English | MEDLINE | ID: mdl-10550668

ABSTRACT

The genome of Toscana virus (Bunyaviridae family, Phlebovirus genus) consists of three single stranded RNA segments (L, M, S), with negative polarity. The L and M segments contain a single ORF in viral complementary sense and the S segment contains two ORFs in "ambisense" orientation. The M segment codes for three proteins in 3'-5' genomic orientation: a 30 kDa non structural protein and two 65 kDa glycoproteins, GN, and GC. In this paper we report the expression in E. coli of the S segment ORFs and of three regions of the L ORF. The expressed proteins were used to produce monospecific polyclonal antibodies in mice. By using these antibodies the N and the NSs proteins were unequivocally assigned to the S viral-complementary and viral-sense ORFs, respectively, and the L protein to the L ORF. We have found that like N and L proteins, NSs protein is associated with the viral nucleocapsids in mature virions, suggesting its possible involvement in early events of viral replication. NSs protein was also found associated with cellular polysomes. In virus-infected cells the anti-L antibodies recognized proteins shorter than the full-length L protein, possibly products of L subgenomic segments. Interestingly these defective products were not found in mature virions, suggesting specific mechanisms in virion assembly.


Subject(s)
Antibodies, Viral/immunology , Phlebovirus/immunology , Viral Nonstructural Proteins/immunology , Viral Structural Proteins/immunology , Antibodies, Viral/biosynthesis , Blotting, Western , Cytoplasm/chemistry , Electrophoresis, Polyacrylamide Gel , Golgi Apparatus/chemistry , Microscopy, Fluorescence , Nucleocapsid/analysis , Phlebovirus/chemistry , Precipitin Tests , Recombinant Proteins/metabolism , Viral Nonstructural Proteins/analysis , Viral Structural Proteins/analysis , Virion/chemistry
18.
Virus Res ; 51(1): 81-91, 1997 Sep.
Article in English | MEDLINE | ID: mdl-9381797

ABSTRACT

The M RNA segment of Toscana (TOS) phlebovirus was cloned and the complete nucleotide sequence determined. The M RNA segment is 4215 nucleotides in length, and it contains a single major open reading frame (ORF) in the viral-complementary sequence, between nucleotides 18 and 4034, which can encode for a polyprotein of 1339 amino acids (Mr 149 kDa). The viral segment is expressed via a unique mRNA containing 10-14 non-templated nucleotides at the 5' end and it is truncated at the 3' end by about 140 nucleotides in a purine-rich region. In M predicted amino acid sequences, several hydrophobic regions have been identified. They could function as a signal sequence or a transmembrane region for the different proteins. Comparison of the deduced amino acid sequence of M precursor product revealed 38, 36, and 25% identity and 58, 56, and 47% similarity with those of Rift Valley fever (RVF), Punta Toro (PT) and Unkuniemi (UUK) viruses, respectively. Residues conserved among the proteins are mainly located at the COOH-portion of the precursor, while the major divergence is in the NSm coding regions. Based on sequence comparison and similarity of hydropathic pattern of TOS M segment with other phleboviruses the N-termini of TOS GN and GC glycoproteins were placed at residues 297 and 936 of the precursor.


Subject(s)
Cloning, Molecular , Genome, Viral , Phlebovirus/chemistry , Phlebovirus/genetics , Amino Acid Sequence , Base Sequence/genetics , Molecular Sequence Data , Open Reading Frames/genetics , Proteins/genetics , RNA, Messenger/analysis , RNA, Messenger/genetics , RNA, Viral/chemistry , RNA, Viral/genetics , Sequence Alignment , Sequence Analysis, RNA , Sequence Homology, Amino Acid , Transcription, Genetic , Viral Matrix Proteins/genetics
19.
J Virol Methods ; 65(2): 147-51, 1997 May.
Article in English | MEDLINE | ID: mdl-9186937

ABSTRACT

An immunoperoxidase monolayer assay (IPMA) was adapted for the detection of antibodies to six arboviruses: three viruses within the flavivirus group (dengue 2, West Nile (WN) and yellow fever) and three in the phlebovirus group (Rift Valley fever (RVF), sandfly fever Naples and sandfly fever Sicilian). Antibody titers of homologous hyper-immune mouse ascitic fluid (HMAF) measured by IPMA were two to eight-fold less than those determined by ELISA. In tests with heterologous HMAF, cross-reactions frequently observed in ELISA, particularly in the flavivirus group, were absent in all IPMA titrations. With human serum samples tested for antibodies to RVF (n = 52) and WN (n = 90), the sensitivity of IPMA as compared with ELISA was 96 and 91%, respectively, specificity of IPMA was 100%. In addition, the IPMA format has several advantages that make it a useful alternative to ELISA for diagnosing arboviral infections under field conditions.


Subject(s)
Antibodies, Viral/blood , Arboviruses/immunology , Arbovirus Infections/blood , Arbovirus Infections/immunology , Arboviruses/chemistry , Cross-Sectional Studies , Enzyme-Linked Immunosorbent Assay , Flavivirus/chemistry , Flavivirus/immunology , Humans , Immunoenzyme Techniques , Immunoglobulin G/blood , Phlebovirus/chemistry , Phlebovirus/immunology , Reproducibility of Results , Sensitivity and Specificity
20.
Virus Genes ; 12(3): 239-47, 1996.
Article in English | MEDLINE | ID: mdl-8883361

ABSTRACT

The complete sequence of the maize stripe tenuivirus (MStV) RNA2 was determined (3337 nucleotides). RNA2 contains two large open reading frames (ORFs) arranged in an ambisense orientation and specific RNAs of ca. 700 and 2600 nucleotides corresponding to the ORFs were detected in MStV-infected plants and planthoppers. The deduced amino acid sequence of the 23,500 MW protein (pv2) encoded by viral RNA2 (vRNA2) was similar to proteins encoded by the rice stripe (RStV) and rice hoja blanca tenuiviruses vRNA2. Sequence analysis suggested that pv2 is membrane associated. The 93,900 MW protein (pvc2) encoded by viral complementary MStV RNA2 (vcRNA2) was similar to the 94,000 MW protein of RStV RNA2 and to the virion membrane glycoproteins for Phlebovirus members of the Bunyaviridae. The phlebovirus glycoprotein cleavage site was similar to a region in the MStV and RStV proteins suggesting that the tenuivirus pvc2 may be processed analogous to the phlebovirus glycoproteins.


Subject(s)
Membrane Glycoproteins/chemistry , Phlebovirus/chemistry , Plant Viruses/metabolism , RNA Viruses/metabolism , Viral Envelope Proteins/chemistry , Viral Proteins/chemistry , Virion/chemistry , Blotting, Northern , Molecular Sequence Data , Nucleic Acid Hybridization , Open Reading Frames
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