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1.
Plant Sci ; 344: 112110, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38704095

ABSTRACT

The date palm is economically vital in the Middle East and North Africa, providing essential fibres, vitamins, and carbohydrates. Understanding the genetic architecture of its traits remains complex due to the tree's perennial nature and long generation times. This study aims to address these complexities by employing advanced genome-wide association (GWAS) and genomic prediction models using previously published data involving fruit acid content, sugar content, dimension, and colour traits. The multivariate GWAS model identified seven QTL, including five novel associations, that shed light on the genetic control of these traits. Furthermore, the research evaluates different genomic prediction models that considered genotype by environment and genotype by trait interactions. While colour- traits demonstrate strong predictive power, other traits display moderate accuracies across different models and scenarios aligned with the expectations when using small reference populations. When designing the cross-validation to predict new individuals, the accuracy of the best multi-trait model was significantly higher than all single-trait models for dimension traits, but not for the remaining traits, which showed similar performances. However, the cross-validation strategy that masked random phenotypic records (i.e., mimicking the unbalanced phenotypic records) showed significantly higher accuracy for all traits except acid contents. The findings underscore the importance of understanding genetic architecture for informed breeding strategies. The research emphasises the need for larger population sizes and multivariate models to enhance gene tagging power and predictive accuracy to advance date palm breeding programs. These findings support more targeted breeding in date palm, improving productivity and resilience to various environments.


Subject(s)
Fruit , Genome-Wide Association Study , Phoeniceae , Fruit/genetics , Phoeniceae/genetics , Quantitative Trait Loci/genetics , Phenotype , Genotype , Genomics/methods , Plant Breeding/methods , Genome, Plant
2.
BMC Plant Biol ; 24(1): 407, 2024 May 16.
Article in English | MEDLINE | ID: mdl-38755531

ABSTRACT

BACKGROUND: The goal of this research is to enhance the quality of cucumber seedlings grown in greenhouses by experimenting with various soilless culture mediums (CMs) and the application of pistachio wood vinegar (WV). The experimental setup was designed as a factorial experiment within a randomized complete block design (RCBD), in greenhouse conditions featuring three replications to assess the effects of different culture media (CMs) and concentrations of pistachio wood vinegar (WV) on cucumber seedling growth. Cucumber seeds were planted in three CMs: coco peat-peat moss, coco peat-vermicompost, and date palm compost-vermicompost mixed in a 75:25 volume-to-volume ratio. These were then treated with pistachio WV at concentrations of 0, 0.5, and 1%, applied four times during irrigation following the emergence of the third leaf. RESULTS: The study revealed that treating seedlings with 0.5% WV in the date palm compost-vermicompost CM significantly enhanced various growth parameters. Specifically, it resulted in a 90% increase in shoot fresh mass, a 59% increase in shoot dry mass, an 11% increase in root fresh mass, a 36% increase in root dry mass, a 65% increase in shoot length, a 62% increase in leaf area, a 25% increase in stem diameter, a 41% increase in relative water content (RWC), and a 6% improvement in membrane stability index (MSI), all in comparison to untreated seedlings grown in coco peat-peat moss CM. Furthermore, chlorophyll a, b, total chlorophyll, and carotenoid levels were 2.3, 2.7, 2.6, and 2.7 times higher, respectively, in seedlings treated with 0.5% WV and grown in the date palm compost-vermicompost CM, compared to those treated with the same concentration of WV but grown in coco peat-peat moss CM. Additionally, the Fv/Fm ratio saw a 52% increase. When plant nutrition was enhanced with the date palm compost-vermicompost CM and 1% WV, auxin content rose by 130% compared to seedlings grown in coco peat-peat moss CM and treated with 0.5% WV. CONCLUSIONS: The study demonstrates that using 0.5% WV in conjunction with date palm compost-vermicompost CM significantly betters the quality of cucumber seedlings, outperforming other treatment combinations.


Subject(s)
Cucumis sativus , Seedlings , Seedlings/growth & development , Seedlings/physiology , Cucumis sativus/growth & development , Cucumis sativus/physiology , Phoeniceae/physiology , Phoeniceae/growth & development , Acetic Acid/metabolism , Pistacia/physiology , Pistacia/growth & development , Composting/methods , Soil/chemistry , Chlorophyll/metabolism
3.
J Ethnopharmacol ; 330: 118168, 2024 Aug 10.
Article in English | MEDLINE | ID: mdl-38604508

ABSTRACT

ETHNOPHARMACOLOGICAL RELEVANCE: Phoenix dactylifera L. pollen is the male reproductive dust of palm flowers known as a natural product that is considered a strong stimulant of sexual potency and fertility in Iranian traditional medicine (ITM). In this regard, no evidence-based medications are empirically prescribed to treat IMI. However, applying traditional medicine for the treatment of male infertility has attracted more attention in recent years. AIM OF THE STUDY: Phoenix dactylifera L. pollen was compared with pentoxifylline (PTX) to evaluate its efficacy on sperm parameters. MATERIALS AND METHODS: During this parallel randomized controlled trial, 80 adult men with asthenozoospermia, oligozoospermia, or teratozoospermia (age 20-35 years) were enrolled. In two separate groups of participants with a 1:1 ratio, participants received either 6 g of Phoenix dactylifera L. pollen powder daily or 400 mg of PTX tablets daily for 90 days. We measured the sperm parameters as well as the serum sex hormones in the sample. ANCOVA and t-tests were used to compare groups. RESULTS: There was no significant difference between the study groups in terms of baseline characteristics or demographic characteristics. According to the results, participants who took Phoenix dactylifera L. pollen powder had significantly improved sperm concentration (p = 0.016), morphology (p = 0.029), sperm counts (p = 0.012), progressive motility (p = 0.016), total motility (p = 0.018), and reduced immotile sperms (p = 0.014) compared to those who took PTX. CONCLUSIONS: In light of these results, Phoenix dactylifera L. pollen is recommended as a treatment factor for ameliorating IMI by enhancing sperm functional capacity and semen parameters.


Subject(s)
Infertility, Male , Pentoxifylline , Phoeniceae , Pollen , Spermatozoa , Humans , Male , Pentoxifylline/pharmacology , Pentoxifylline/therapeutic use , Adult , Phoeniceae/chemistry , Young Adult , Spermatozoa/drug effects , Infertility, Male/drug therapy , Sperm Motility/drug effects , Asthenozoospermia/drug therapy , Iran , Sperm Count , Oligospermia/drug therapy , Plant Extracts/pharmacology , Plant Extracts/therapeutic use
4.
Int J Biol Macromol ; 267(Pt 1): 131540, 2024 May.
Article in English | MEDLINE | ID: mdl-38608992

ABSTRACT

Lignin-containing nanocellulose (LNC) is a compelling alternative to traditional nanocellulose (NC), it offers enhanced yields and a reduction in the demand for toxic chemicals. This research involves the isolation of LNC from date palm waste using a green hydrolysis process and its subsequent characterization. The potential of using ionic liquids (ILs) as green solvents to isolate LNC has not yet been explored. Our findings suggest that 1-ethyl-3-methylimidazolium chloride ([Emim]Cl) can hydrolyze partially delignified and unbleached lignocellulose, achieving LNC synthesis. The obtained LNC showed a higher yield than its NC counterpart and exhibited rod-shaped fibers with nanoscale diameters and micrometer lengths, indicating a high aspect ratio. Dynamic Light Scattering (DLS) results indicate average particle sizes of 143.20 nm for NC and 282.30 nm for LNC, with a narrow particle size distribution conforming their monodisperse behavior. Thermogravimetric analysis and differential scanning calorimetry revealed high thermal stability (initial degradation temperature = 222.50 °C and glass transition temperature = 84.45°C) of LNC. Moreover, the obtained LNC fibers were crystalline (crystallinity index = 52.76 %). Their activation energy (124.95 kJ/mol) was determined using the Coats-Redfern method by employing eight solid-state diffusion models. Overall, this study motivates the use of ILs as green solvents to produce lignocellulose derivatives that are suitable for various applications.


Subject(s)
Cellulose , Green Chemistry Technology , Lignin , Phoeniceae , Solvents , Lignin/chemistry , Solvents/chemistry , Cellulose/chemistry , Green Chemistry Technology/methods , Phoeniceae/chemistry , Hydrolysis , Ionic Liquids/chemistry , Thermogravimetry , Waste Products , Temperature , Particle Size
5.
J Ethnopharmacol ; 329: 118138, 2024 Jul 15.
Article in English | MEDLINE | ID: mdl-38565410

ABSTRACT

ETHNOPHARMACOLOGICAL RELEVANCE: Phoenix dactylifera L. (date palm) seed is widely used in Arabian traditional medicine to alleviate several health problems including inflammatory conditions. The herbal tea of date palm seed has been consumed by rheumatoid patients to relief their symptoms. AIM OF THE STUDY: The purpose of this study was to investigate the claimed beneficial use of P. dactylifera L. (Sewy variety) seed (PDS) in the treatment of rheumatoid arthritis (RA) and its mechanism of action as well as to study its phytoconstituents. MATERIALS AND METHODS: The anti-inflammatory and anti-oxidative properties of the non-polar and the polar extracts of PDS were studied using Complete Freund's adjuvant (CFA)-induced arthritis rat model. Paw edema, body weight, total nitrate/nitrite NOX content and cytokine markers were evaluated to monitor the progress of arthritis. Also, histological examination and thermal analysis were conducted. The phytoconstituent profiles of non-polar and polar extracts of PDS were investigated using liquid chromatography-electrospray ionization-tandem mass spectrometry (LC-ESI-MS/MS). The multiple reactions monitoring mode (MRM) of liquid chromatography-electrospray ionization-tandem mass spectrometry (LC-ESI-MS/MS) was used to quantify phenolic phytoconstituents in both extracts. RESULTS: According to the findings, the polar and non-polar PDS extracts kept body weight comparable to those of healthy individuals while considerably lowering paw swelling, edema, and neutrophil infiltration. It also reduced the levels of Nuclear Factor Kappa B (NF-κB), Tumor Necrosis Factor Alpha (TNF-α), Interleukin 22, Interleukin 23, Interferon (IFN), Interleukin 17, Interleukin 1ß, Interleukin 6, Interleukin 36, Janus Kinase 1 (JAK1), and Signal Transducer and Activator of Transcription 3 (STAT3). They also reduced the degenerative alterations caused by RA. Thermal research gave additional support for these findings. 83 phytoconstituents were identified in the non-polar PDS extract and 86 phytoconstituents were identified in the polar PDS extract. 74 of the identified phytoconstituents were common in both extracts. 33 phytoconstituents were identified here from P. dactylifera for the first time as far as we know. In MRM-LC-ESI-MS/MS analysis, the major phenolics in both extracts were chlorogenic acid, naringenin, and vanillin. Catechin was only detected in the non-polar PDS extract. On the other hand, apigenin, kaempferol, and hesperetin were only detected in the polar PDS extract. Generally, the polar PDS extract showed higher concentrations of the identified phenolics than the non-polar extract. CONCLUSIONS: The PDS extracts especially the non-polar extract showed significant anti-inflammatory and anti-oxidative properties in the CFA-induced arthritis rat model. PDS might be used to produce RA medicines.


Subject(s)
Anti-Inflammatory Agents , Arthritis, Experimental , Cytokines , Freund's Adjuvant , Janus Kinase 1 , Phoeniceae , Plant Extracts , STAT3 Transcription Factor , Seeds , Animals , Phoeniceae/chemistry , STAT3 Transcription Factor/metabolism , Arthritis, Experimental/drug therapy , Arthritis, Experimental/pathology , Plant Extracts/pharmacology , Plant Extracts/chemistry , Janus Kinase 1/metabolism , Anti-Inflammatory Agents/pharmacology , Cytokines/metabolism , Seeds/chemistry , Male , Antirheumatic Agents/pharmacology , Antirheumatic Agents/isolation & purification , Rats , Phytochemicals/analysis , Phytochemicals/pharmacology , Signal Transduction/drug effects , Rats, Wistar , Rats, Sprague-Dawley , Antioxidants/pharmacology
6.
Environ Sci Pollut Res Int ; 31(17): 25227-25237, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38468010

ABSTRACT

A quantitative method based on quick, easy, cheap, effective, rugged, and safe technique (QuEChERS) sample extraction and ultra-performance liquid chromatography/tandem mass spectrometry (UHPLC-MS/MS) was evolved for the determination of 47 pesticide residues in fresh Mazafati date fruits from Bam City of Kerman Province, Iran. The recoveries for selected pesticides ranged from 88 to 110% with a relative standard deviation (RSD) of less than 20% at concentrations of 0.05 and 0.1 mg kg-1. The proposed method had a linear range from the limit of quantification (LOQ) to 1.00 mg kg-1, and the LOQ of the 47 pesticides was ≤ 0.005 mg kg-1. The coefficients of determination (R2) were more than 0.99. This technique was used on 12 fresh date fruits samples, three water samples, and three soil samples with three replications per sample. Forty-seven pesticide were detected collectively, but only diazinon was detected in the date fruit samples. The mean value of diazinon residues was 0.037 mg kg-1, and the concentration of diazinon in most samples was below the national maximum residue limit (MRL) for date fruit (0.05 mg kg-1). Among the pesticides measured, diazinon residues were also detected in the water samples, but not in the soil samples. The dietary intake assessment showed no health risk to humans from the consumption of fresh date fruit concerning the pesticides investigated.


Subject(s)
Pesticide Residues , Pesticides , Phoeniceae , Humans , Pesticide Residues/analysis , Tandem Mass Spectrometry/methods , Water/analysis , Diazinon/analysis , Soil , Food Contamination/analysis , Vegetables/chemistry , Fruit/chemistry , Pesticides/analysis
7.
Biomarkers ; 29(3): 143-153, 2024 May.
Article in English | MEDLINE | ID: mdl-38483941

ABSTRACT

INTRODUCTION: The present study aimed at investigating the effect of dietary supplementation of Phoenix dactylifera, an important component of aphrodisiac supplements, on sexual performance, oxido-inflammatory mediators and purinergic signaling system in hypertensive rats. MATERIAL AND METHODS: Hypertension was induced via oral administration of 40 mg/kg L-NAME. Thereafter, the sexual performance of the experimental animals was determined and the hypertensive rats with impaired sexual activities were placed on P. dactylifera-supplemented diet for 21 days, and the effects of the treatment on the overall sexual behavior, antioxidant status, oxido-inflammatory biomarkers, and enzyme activity of the purinergic system were assessed. RESULTS: Hypertensive rats showed a significant (p < 0.05) decrease in sexual performance, elevated level of oxido-inflammatory mediators, and altered purinergic enzymes activity when compared with the control. However, sub-chronic feeding with P. dactylifera-supplemented diet improved sexual performance, significantly lowered oxido-inflammatory biomarkers, and enhanced the activity of purinergic enzymes in hypertensive rats. CONCLUSION: Findings presented in this study suggest that dietary inclusion of P. dactylifera could be useful in managing erectile dysfunction (ED) commonly observed in subjects with hypertension. Findings highlighted in this study thus provide the scientific basis supporting the folkloric use of P. dactylifera as a key ingredient in aphrodisiac supplements.


Subject(s)
Aphrodisiacs , Hypertension , Phoeniceae , Humans , Rats , Male , Animals , Fruit , Aphrodisiacs/adverse effects , Hypertension/chemically induced , Biomarkers
8.
BMC Plant Biol ; 24(1): 225, 2024 Mar 27.
Article in English | MEDLINE | ID: mdl-38539110

ABSTRACT

BACKGROUND: Plants are considered the primary source of many principal bioactive compounds that have been utilized in a wide range of applications including the pharmaceutical and biotechnological industries. Therefore, there is an imperative need to modulate the production of natural bioactive components. The present study aimed to determine the importance of dried and pulverized date palm seeds (DPS) as a natural elicitor for the synthesis of secondary metabolites in Lotus arabicus L. RESULTS: The presence of various antioxidant compounds, simple sugars, amino acids, fatty acids and reasonable mineral contents was distinct in the phytochemical characterization of DPS. The major components detected in DPS analysis were the 5-(hydroxymethyl) furfural and 2,3-dihydro-3,5-dihydroxy-6-methyl-4H-pyranone. The induced callus of L. arabicus (seven weeks old) was supplemented with DPS at different concentrations (0, 2, 4, 8 and 10 g/l) in culture media. Treatment with 8 g/l DPS induced the highest antioxidant capacity, ascorbic acid content and secondary metabolites (total phenolics and flavonoids) in the produced callus. Stress biomarkers (hydrogen peroxide and malondialdehyde) were found in the control ranges except at 10 g/l DPS. The expression patterns of key genes involoved in secondary metabolism modulation, such as phenylalanine ammonia lyase (PAL), chalcone synthase (CHS), chalcone isomerase (CHI), flavonol synthase (FLS) and deoxyxylulose phosphate reductoisomerase (DXR), were triggered after DPS treatments. Moreover, the quantitative profiling of phenolic and flavonoid compounds showed that supplementation with DPS, especially at 8 g/l, led to pronounced increases in most of the measured compounds. CONCLUSION: The marked upregulation of eliciting-responsive genes and overproduction of secondary metabolites provide molecular-based evidence for intensifying the principal pathways of phenylpropanoid, flavonoid and terpenoid biosynthesis. Overall, the present in vitro study highlights the stimulating capacity of DPS utilization to improve the bioactive components of L. arabicus at the physiological and molecular levels, enhancing its potential as a medicinal herb.


Subject(s)
Lotus , Phoeniceae , Antioxidants/metabolism , Lotus/metabolism , Phoeniceae/metabolism , Powders , Flavonoids/metabolism , Phenols/metabolism , Seeds/metabolism
9.
Food Res Int ; 181: 114096, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38448106

ABSTRACT

In this research, different seeds of Australian-grown date palm (Phoenix dactylifera L.) were studied to evaluate the antioxidant potential and analyze their phenolic constituents. Phenolic compounds were extracted from seeds of various Australian-grown date varieties at different ripening stages. Eight varieties of date seeds (Zahidi, Medjool, Deglet nour, Thoory, Halawi, Barhee, Khadrawy, and Bau Strami) at three ripening stages (Kimri, Khalal, and Tamar) were investigated in this study. Date seeds at Khalal (9.87-16.93 mg GAE/g) and Tamar (9.20-27.87 mg GAE/g) stages showed higher total phenolic content than those at Kimri stage (1.81-5.99 mg GAE/g). For antioxidant assays like DPPH, FRAP, ABTS, RAP, FICA, and TAC, date seeds at Khalal and Tamar stages also showed higher antioxidant potential than Kimri stage. However, date seeds at Kimri stage (55.24-63.26 mg TE/g) expressed higher radical scavenging activity than Khalal (13.58-51.88 mg TE/g) and Tamar (11.06-50.92 mg TE/g) stages. Phenolic compounds were characterized using LC-ESI-QTOF-MS/MS, revealing the presence of 37 different phenolic compounds, including 8 phenolic acids, 18 flavonoids, and 11 other phenolic compounds. Further, phenolic compounds were quantified using LC-DAD, revealing that Zahidi variety of date seeds exhibited the highest content during the Kimri stage. In contrast, during the Khalal and Tamar stages, Deglet nour and Medjool date seeds displayed higher concentrations of phenolic compounds. The results indicated an increase in phenolic content in date seeds after the Kimri stage, with significant variations observed among different date varieties.


Subject(s)
Antioxidants , Phoeniceae , Australia , Tandem Mass Spectrometry , Phenols , Seeds
10.
BMC Genom Data ; 25(1): 31, 2024 Mar 15.
Article in English | MEDLINE | ID: mdl-38491426

ABSTRACT

BACKGROUND: Dates contain various minerals that are essential for good health. The major RNA interference (RNAi) gene families play a vital role in plant growth and development by controlling the expression of protein-coding genes against different biotic and abiotic stresses. However, these gene families for date palm are not yet studied. Therefore, this study has explored major RNAi genes and their characteristics in date palm. RESULTS: We have identified 4 PdDCLs, 7 PdAGOs, and 3 PdRDRs as RNAi proteins from the date palm genome by using AtRNAi genes as query sequences in BLASTp search. Domain analysis of predicted RNAi genes has revealed the Helicase_C, Dicer_dimer, PAZ, RNase III, and Piwi domains that are associated with the gene silencing mechanisms. Most PdRNAi proteins have been found in the nucleus and cytosol associated with the gene silencing actions. The gene ontology (GO) enrichment analysis has revealed some important GO terms including RNA interference, dsRNA fragmentation, and ribonuclease_III activity that are related to the protein-coding gene silencing mechanisms. Gene regulatory network (GRN) analysis has identified PAZ and SNF2 as the transcriptional regulators of PdRNAi genes. Top-ranked 10 microRNAs including Pda-miR156b, Pda-miR396a, Pda-miR166a, Pda-miR167d, and Pda-miR529a have been identified as the key post-transcriptional regulators of PdRNAi genes that are associated with different biotic/abiotic stresses. The cis-acting regulatory element analysis of PdRNAi genes has detected some vital cis-acting elements including ABRE, MBS, MYB, MYC, Box-4, G-box, I-box, and STRE that are linked with different abiotic stresses. CONCLUSION: The results of this study might be valuable resources for the improvement of different characteristics in date palm by further studies in wet-lab.


Subject(s)
MicroRNAs , Phoeniceae , Phoeniceae/genetics , RNA Interference , Genome , Regulatory Sequences, Nucleic Acid
11.
Biomarkers ; 29(2): 45-54, 2024 Mar.
Article in English | MEDLINE | ID: mdl-38314578

ABSTRACT

OBJECTIVE: Idiopathic pulmonary fibrosis (IPF) is the most serious form of interstitial lung disease. We aimed to investigate the effect of Phœnix dactylifera, L. seed oil (DSO) on a murine model of IPF induced by bleomycin (BLM). METHODS: Male Wistar rats were treated with a single intra-tracheal injection of BLM (4 mg/kg) and a daily intraperitoneal injection of DSO (75, 150 and 300 mg/kg) for 4 weeks. RESULTS: Our phytochemical results showed that DSO has an important antioxidant activity with a high content of polyphenols and flavonoids. High-Performance Liquid Chromatography (HPLC) and Gas chromatography/mass spectrometry (GC-MS) analysis revealed a high amount of oleic and lauric acids and a large quantity of vitamins. Histological examination showed a significant reduction in fibrosis score and collagen bands in the group of rats treated with 75 mg/kg of DSO compared to the BLM group. DSO (75 mg/kg) reversed also the increase in catalase and malondialdehyde (MDA) levels while higher doses (150 and 300 mg/kg) are ineffective against the deleterious effects of BLM. We revealed also that DSO has no renal or hepatic cytotoxic effects. CONCLUSION: DSO can play antioxidant and antifibrotic effects on rat models of pulmonary fibrosis at the lowest dose administered.


Subject(s)
Phoeniceae , Pulmonary Fibrosis , Rats , Male , Mice , Animals , Pulmonary Fibrosis/chemically induced , Pulmonary Fibrosis/drug therapy , Pulmonary Fibrosis/pathology , Rats, Wistar , Bleomycin/adverse effects , Lung/pathology , Oxidative Stress , Antioxidants/pharmacology , Plant Oils/pharmacology
12.
Environ Sci Pollut Res Int ; 31(13): 19244-19256, 2024 Mar.
Article in English | MEDLINE | ID: mdl-38355862

ABSTRACT

Solar water heaters are a type of renewable energy technology that converts solar energy into heat to warm water. Solar water heaters are becoming increasingly popular due to their eco-friendliness, cost-effectiveness, and low maintenance requirements. In this study, low-cost solar collectors were developed using date palm waste (dried leaves) as thermal insulation. Date palm waste is a readily available and abundant resource in many regions, and using it in solar collectors can help reduce waste and promote sustainability. Two solar collectors were fabricated using crushed date palm waste, with one collector using the waste alone and the other mixed with starch. Tests were conducted in accordance with the European standard EN 12975-2-2006 and modeled the thermal behavior of the collectors. The results obtained showed that the prototypes of solar collectors performed well and exhibited behavior comparable to that of a commercial solar collector, with a production cost up to three times less. The use of date palm waste as thermal insulation in solar collectors is an innovative approach that aligns with the principles of sustainability and environmental friendliness. Furthermore, it was found that the leveled heating cost (LCOH) and the simple payback period (SPP) were 0.952 US$ kWh-1 and 2.472 years for the prototype without starch and 0.926 US$ kWh-1 and 2.397 years for the prototype with starch.


Subject(s)
Phoeniceae , Solar Energy , Water , Starch , Sunlight
13.
Trends Genet ; 40(5): 398-409, 2024 May.
Article in English | MEDLINE | ID: mdl-38423916

ABSTRACT

Abundant and plentiful fruit crops are threatened by the loss of diverse legacy cultivars which are being replaced by a limited set of high-yielding ones. This article delves into the potential of paleogenomics that utilizes ancient DNA analysis to revive lost diversity. By focusing on grapevines, date palms, and tomatoes, recent studies showcase the effectiveness of paleogenomic techniques in identifying and understanding genetic traits crucial for crop resilience, disease resistance, and nutritional value. The approach not only tracks landrace dispersal and introgression but also sheds light on domestication events. In the face of major future environmental challenges, integrating paleogenomics with modern breeding strategies emerges as a promising avenue to significantly bolster fruit crop sustainability.


Subject(s)
Crops, Agricultural , Fruit , Crops, Agricultural/genetics , Fruit/genetics , Genomics/methods , Domestication , Plant Breeding/methods , Genetic Variation , Genome, Plant/genetics , Vitis/genetics , Solanum lycopersicum/genetics , Phoeniceae/genetics
14.
Sci Rep ; 14(1): 4863, 2024 02 28.
Article in English | MEDLINE | ID: mdl-38418836

ABSTRACT

Plant-based melanin seems to be abundant, but it did not receive scientific attention despite its importance in plant biology and medicinal applications, e.g. photoprotection, radical scavenging, antimicrobial properties, etc. Date fruit melanin (DM) has complex, graphene-like, polymeric structure that needs characterization to understand its molecular properties and potential applications. This study provides the first investigation of the possible molecular composition of DM. High performance size-exclusion chromatography (HPSEC) suggested that DM contains oligomeric structures (569-3236 Da) and transmission electron microscopy (TEM) showed agglomeration of these structures in granules of low total porosity (10-1000 Å). Nuclear magnetic resonance (NMR) spectroscopy provided evidence for the presence of oligomeric proanthocyanidins and electron paramagnetic resonance (EPR) spectroscopy revealed a g-factor in the range 2.0034-2.005. Density functional theory (DFT) calculations suggested that the EPR signals can be associated with oligomeric proanthocyanidin structures having 4 and above molecular units of (-)-epicatechin. The discovery of edible melanin in date fruits and its characterization are expected to open a new area of research on its significance to nutritional and sensory characteristics of plant-based foods.


Subject(s)
Catechin , Phoeniceae , Proanthocyanidins , Proanthocyanidins/chemistry , Catechin/analysis , Melanins/analysis , Fruit/chemistry
15.
Physiol Plant ; 176(1): e14189, 2024.
Article in English | MEDLINE | ID: mdl-38342489

ABSTRACT

The date palm is a resilient, socioeconomically valuable desert fruit tree renowned for its heat, drought, and salinity tolerance. Date palm fruits are rich in nutrients and antioxidants, and their beneficial health properties can mitigate current and future food security challenges. However, it is challenging to improve date palm production through conventional breeding methods due to its slow growth. Date palm seeds do not produce true-to-type progeny, and commercial propagation relies on direct organogenesis from maternal tissue. Consequently, numerous economically important and valuable cultivars are lost due to tissue recalcitrance and challenges in inducing cell dedifferentiation and regeneration. Moreover, genetic engineering of date palms is currently impossible due to the lack of a stable genetic transformation protocol. This hampers the development of genetic resources in date palms. This study established a tissue culture pipeline and a genetic transformation protocol for various commercially important date palm cultivars. We used the non-invasive visual reporter RUBY and four morphogenic regulators to validate and improve date palm transformation potential. We found that the date palm BABY-BOOM (PdBBM) and the WOUND INDUCED DEDIFFERENTIATION (PdWIND1) enhanced transformation efficacy. We show that PdBBM can induce embryogenesis in hormone-free media and regenerate roots and shoots in recalcitrant varieties. On the other hand, PdWIND1 maintained embryogenic cells in their undifferentiated state. Our study provides a foundation for genetically improving date palms and a potential solution for preserving economically valuable varieties.


Subject(s)
Phoeniceae , Phoeniceae/genetics , Antioxidants
16.
Braz J Microbiol ; 55(1): 843-854, 2024 Mar.
Article in English | MEDLINE | ID: mdl-38270795

ABSTRACT

Soil contamination by heavy metals is one of the major problems that adversely decrease plant growth and biomass production. Inoculation with the plant growth-promoting rhizobacteria (PGPR) can attenuate the toxicity of heavy metals and enhancing the plant growth. In this study, we evaluated the potential of a novel extremotolerant strain (IS-2 T) isolated from date palm rhizosphere to improve barley seedling growth under heavy metal stress. The species-level identification was carried out using morphological and biochemical methods combined with whole genome sequencing. The bacterial strain was then used in vitro for inoculating Hordeum vulgare L. exposed to three different Cr, Zn, and Ni concentrations (0.5, 1, and 2 mM) in petri dishes and different morphological parameters were assessed. The strain was identified as Bacillus glycinifermentans species. This strain showed high tolerance to pH (6-11), salt stress (0.2-2 M), and heavy metals. Indeed, the minimum inhibitory concentrations at which bacterium was unable to grow were 4 mM for nickel, 3 mM for zinc, more than 8 mM for copper, and 40 mM for chromium, respectively. It was observed that inoculation of Hordeum vulgare L. under metal stress conditions with Bacillus glycinifermentans IS-2 T stain improved considerably the growth parameters. The capacity of the IS-2 T strain to withstand a range of abiotic stresses and improve barley seedling development under lab conditions makes it a promising candidate for use as a PGPR in zinc, nickel, copper, and chromium bioremediation.


Subject(s)
Bacillus , Hordeum , Metals, Heavy , Phoeniceae , Soil Pollutants , Copper/pharmacology , Nickel/toxicity , Rhizosphere , Metals, Heavy/toxicity , Bacteria , Chromium/toxicity , Biodegradation, Environmental , Seeds , Zinc , Soil , Plant Roots/microbiology
17.
BMC Pregnancy Childbirth ; 24(1): 12, 2024 Jan 02.
Article in English | MEDLINE | ID: mdl-38166785

ABSTRACT

BACKGROUND: Recent reviews have reported inconclusive results regarding the usefulness of consuming dates (Phoenix dactylifera L. fruit) in the peripartum period. Hence, this updated systematic review with meta-analysis sought to investigate the efficacy and safety of this integrated intervention in facilitating childbirth and improving perinatal outcomes. METHODS: Eight data sources were searched comprehensively from their inception until April 30, 2023. Parallel-group randomized and non-randomized controlled trials published in any language were included if conducted during peripartum (i.e., third trimester of pregnancy, late pregnancy, labor, or postpartum) to assess standard care plus oral consumption of dates versus standard care alone or combined with other alternative interventions. The Cochrane Collaboration's Risk of Bias (RoB) assessment tools and the Grading of Recommendations Assessment, Development, and Evaluation (GRADE) were employed to evaluate the potential RoB and the overall quality of the evidence, respectively. Sufficient data were pooled by a random-effect approach utilizing Stata software. RESULTS: Of 2,460 records in the initial search, 48 studies reported in 55 publications were included. Data were insufficient for meta-analysis regarding fetal, neonatal, or infant outcomes; nonetheless, most outcomes were not substantially different between dates consumer and standard care groups. However, meta-analyses revealed that dates consumption in late pregnancy significantly shortened the length of gestation and labor, except for the second labor stage; declined the need for labor induction; accelerated spontaneity of delivery; raised cervical dilatation (CD) upon admission, Bishop score, and frequency of spontaneous vaginal delivery. The dates intake in labor also significantly reduced labor duration, except for the third labor stage, and increased CD two hours post-intervention. Moreover, the intervention during postpartum significantly boosted the breast milk quantity and reduced post-delivery hemorrhage. Likewise, dates supplementation in the third trimester of pregnancy significantly increased maternal hemoglobin levels. The overall evidence quality was also unacceptable, and RoB was high in most studies. Furthermore, the intervention's safety was recorded only in four trials. CONCLUSION: More well-designed investigations are required to robustly support consuming dates during peripartum as effective and safe integrated care. TRIAL REGISTRATION: PROSPERO Registration No: CRD42023399626.


Subject(s)
Labor, Obstetric , Phoeniceae , Female , Humans , Infant, Newborn , Pregnancy , Fruit , Parturition , Peripartum Period , Infant
18.
Sensors (Basel) ; 24(2)2024 Jan 16.
Article in English | MEDLINE | ID: mdl-38257650

ABSTRACT

The popularity and demand for high-quality date palm fruits (Phoenix dactylifera L.) have been growing, and their quality largely depends on the type of handling, storage, and processing methods. The current methods of geometric evaluation and classification of date palm fruits are characterised by high labour intensity and are usually performed mechanically, which may cause additional damage and reduce the quality and value of the product. Therefore, non-contact methods are being sought based on image analysis, with digital solutions controlling the evaluation and classification processes. The main objective of this paper is to develop an automatic classification model for varieties of date palm fruits using a convolutional neural network (CNN) based on two fundamental criteria, i.e., colour difference and evaluation of geometric parameters of dates. A CNN with a fixed architecture was built, marked as DateNET, consisting of a system of five alternating Conv2D, MaxPooling2D, and Dropout classes. The validation accuracy of the model presented in this study depended on the selection of classification criteria. It was 85.24% for fruit colour-based classification and 87.62% for the geometric parameters only; however, it increased considerably to 93.41% when both the colour and geometry of dates were considered.


Subject(s)
Labor, Obstetric , Phoeniceae , Pregnancy , Female , Humans , Fruit , Image Processing, Computer-Assisted , Neural Networks, Computer
19.
Environ Sci Pollut Res Int ; 31(7): 10661-10672, 2024 Feb.
Article in English | MEDLINE | ID: mdl-38200195

ABSTRACT

This study focuses on the removal of heavy metal ions, such as cadmium (Cd2+), lead (Pb2+), chromium (Cr6+), and zinc (Zn2+) from water. Metals, which are often present in water, can have various origins, i.e., industrial emissions, mining, melting, corrosion, municipal, industrial waste, and agrochemicals. These metals have the potential to cause adverse effects on human health. The study employed activated carbon derived from date palm waste as a means of removing heavy metals. The activated nanoparticles were characterized using various analytical techniques, including SEM, ICP, XRD, BET, Raman, and FTIR analysis. Batch studies were conducted to optimize the metal ion adsorption onto the activated carbon of date palm waste. The adsorption process was evaluated using isotherm models and reaction kinetics under various conditions, including contact time, dosage, pH, and initial concentration. The findings of this study revealed that the prepared activated carbon from date palm waste effectively removed up to 85% of Cr6+, Pb2+, Cd2+, and Zn2+ ions from water. This study highlights the potential of using agricultural waste, to produce effective adsorbents for heavy metal removal.


Subject(s)
Metals, Heavy , Phoeniceae , Water Pollutants, Chemical , Humans , Cadmium/analysis , Charcoal/chemistry , Lead , Metals, Heavy/analysis , Adsorption , Water/chemistry , Ions , Water Pollutants, Chemical/analysis , Hydrogen-Ion Concentration , Kinetics
20.
Plant Genome ; 17(1): e20372, 2024 Mar.
Article in English | MEDLINE | ID: mdl-37518859

ABSTRACT

Date palm (Phoenix dactylifera L.) is able to grow and complete its life cycle while being rooted in highly saline soils. Which of the many well-known salt-tolerance strategies are combined to fine-tune this remarkable resilience is unknown. The precise location, whether in the shoot or the root, where these strategies are employed remains uncertain, leaving us unaware of how the various known salt-tolerance mechanisms are integrated to fine-tune this remarkable resilience. To address this shortcoming, we exposed date palm to a salt stress dose equivalent to seawater for up to 4 weeks and applied integrative multi-omics analyses followed by targeted metabolomics, hormone, and ion analyses. Integration of proteomic into transcriptomic data allowed a view beyond simple correlation, revealing a remarkably high degree of convergence between gene expression and protein abundance. This sheds a clear light on the acclimatization mechanisms employed, which depend on reprogramming of protein biosynthesis. For growth in highly saline habitats, date palm effectively combines various salt-tolerance mechanisms found in both halophytes and glycophytes: "avoidance" by efficient sodium and chloride exclusion at the roots, and "acclimation" by osmotic adjustment, reactive oxygen species scavenging in leaves, and remodeling of the ribosome-associated proteome in salt-exposed root cells. Combined efficiently as in P. dactylifera L., these sets of mechanisms seem to explain the palm's excellent salt stress tolerance.


Subject(s)
Phoeniceae , Phoeniceae/genetics , Salt-Tolerant Plants/genetics , Multiomics , Proteomics , Seawater
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