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1.
Parasitol Res ; 120(4): 1421-1428, 2021 Apr.
Article in English | MEDLINE | ID: mdl-33098461

ABSTRACT

Trypanosoma cruzi, the causative agent of Chagas' disease, belongs to the Trypanosomatidae family. The parasite undergoes multiple morphological and metabolic changes during its life cycle, in which it can use both glucose and amino acids as carbon and energy sources. The glycolytic pathway is peculiar in that its first six or seven steps are compartmentalized in glycosomes, and has a two-branched auxiliary glycosomal system functioning beyond the intermediate phosphoenolpyruvate (PEP) that is also used in the cytosol as substrate by pyruvate kinase. The pyruvate phosphate dikinase (PPDK) is the first enzyme of one branch, converting PEP, PPi, and AMP into pyruvate, Pi, and ATP. Here we present a kinetic study of PPDK from T. cruzi that reveals its hysteretic behavior. The length of the lag phase, and therefore the time for reaching higher specific activity values is affected by the concentration of the enzyme, the presence of hydrogen ions and the concentrations of the enzyme's substrates. Additionally, the formation of a more active PPDK with more complex structure is promoted by it substrates and the cation ammonium, indicating that this enzyme equilibrates between the monomeric (less active) and a more complex (more active) form depending on the medium. These results confirm the hysteretic behavior of PPDK and are suggestive for its functioning as a regulatory mechanism of this auxiliary pathway. Such a regulation could serve to distribute the glycolytic flux over the two auxiliary branches as a response to the different environments that the parasite encounters during its life cycle.


Subject(s)
Chagas Disease/parasitology , Pyruvate, Orthophosphate Dikinase/metabolism , Trypanosoma cruzi/enzymology , Adenosine Monophosphate/metabolism , Diphosphates/metabolism , Glucose/metabolism , Glycolysis , Hydrogen-Ion Concentration , Kinetics , Microbodies/enzymology , Phosphoenolpyruvate/metabolism , Pyruvate, Orthophosphate Dikinase/chemistry , Pyruvates/metabolism , Recombinant Proteins/metabolism
2.
Biochem J ; 477(11): 2095-2114, 2020 06 12.
Article in English | MEDLINE | ID: mdl-32459324

ABSTRACT

Activation of phosphoenolpyruvate carboxylase (PEPC) enzymes by glucose 6-phosphate (G6P) and other phospho-sugars is of major physiological relevance. Previous kinetic, site-directed mutagenesis and crystallographic results are consistent with allosteric activation, but the existence of a G6P-allosteric site was questioned and competitive activation-in which G6P would bind to the active site eliciting the same positive homotropic effect as the substrate phosphoenolpyruvate (PEP)-was proposed. Here, we report the crystal structure of the PEPC-C4 isozyme from Zea mays with G6P well bound into the previously proposed allosteric site, unambiguously confirming its existence. To test its functionality, Asp239-which participates in a web of interactions of the protein with G6P-was changed to alanine. The D239A variant was not activated by G6P but, on the contrary, inhibited. Inhibition was also observed in the wild-type enzyme at concentrations of G6P higher than those producing activation, and probably arises from G6P binding to the active site in competition with PEP. The lower activity and cooperativity for the substrate PEP, lower activation by glycine and diminished response to malate of the D239A variant suggest that the heterotropic allosteric activation effects of free-PEP are also abolished in this variant. Together, our findings are consistent with both the existence of the G6P-allosteric site and its essentiality for the activation of PEPC enzymes by phosphorylated compounds. Furthermore, our findings suggest a central role of the G6P-allosteric site in the overall kinetics of these enzymes even in the absence of G6P or other phospho-sugars, because of its involvement in activation by free-PEP.


Subject(s)
Glucose-6-Phosphate/chemistry , Phosphoenolpyruvate Carboxylase/chemistry , Phosphoenolpyruvate/chemistry , Plant Proteins/chemistry , Zea mays/enzymology , Allosteric Regulation , Catalytic Domain , Glucose-6-Phosphate/metabolism , Kinetics , Phosphoenolpyruvate/metabolism , Phosphoenolpyruvate Carboxylase/genetics , Phosphoenolpyruvate Carboxylase/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism , Zea mays/genetics
3.
J Mol Microbiol Biotechnol ; 25(2-3): 195-208, 2015.
Article in English | MEDLINE | ID: mdl-26159079

ABSTRACT

Laboratory and industrial cultures of Escherichia coli employ media containing glucose which is mainly transported and phosphorylated by the phosphotransferase system (PTS). In these strains, 50% of the phosphoenolpyruvate (PEP), which results from the catabolism of transported glucose, is used as a phosphate donor for its phosphorylation and translocation by the PTS. This characteristic of the PTS limits the production of industrial biocommodities that have PEP as a precursor. Furthermore, when E. coli is exposed to carbohydrate mixtures, the PTS prevents expression of catabolic and non-PTS transport genes by carbon catabolite repression and inducer exclusion. In this contribution, we discuss the main strategies developed to overcome these potentially limiting effects in production strains. These strategies include adaptive laboratory evolution selection of PTS(-) Glc(+) mutants, followed by the generation of strains that recover their ability to grow with glucose as a carbon source while allowing the simultaneous consumption of more than one carbon source. We discuss the benefits of using alternative glucose transport systems and describe the application of these strategies to E. coli strains with specific genetic modifications in target pathways. These efforts have resulted in significant improvements in the production of diverse biocommodities, including aromatic metabolites, biofuels and organic acids.


Subject(s)
Escherichia coli Proteins/genetics , Escherichia coli/genetics , Escherichia coli/metabolism , Metabolic Engineering , Phosphoenolpyruvate Sugar Phosphotransferase System/genetics , Biofuels , Biological Transport , Catabolite Repression , Directed Molecular Evolution , Escherichia coli/growth & development , Escherichia coli Proteins/metabolism , Glucose/metabolism , Phenotype , Phosphoenolpyruvate/metabolism , Phosphoenolpyruvate Sugar Phosphotransferase System/metabolism , Phosphorylation
4.
Int J Mol Sci ; 15(12): 22214-26, 2014 Dec 02.
Article in English | MEDLINE | ID: mdl-25474090

ABSTRACT

In a previous phylogenetic study of the family of pyruvate kinase, we found one cluster with Glu117 and another with Lys117. Those sequences with Glu117 have Thr113 and are K+-dependent, whereas those with Lys117 have Leu113 and are K+-independent. The carbonyl oxygen of Thr113 is one of the residues that coordinate K+ in the active site. Even though the side chain of Thr113 does not participate in binding K+, the strict co-evolution between position 117 and 113 suggests that T113 may be the result of the evolutionary pressure to maintain the selectivity of pyruvate kinase activity for K+. Thus, we explored if the replacement of Thr113 by Leu alters the characteristics of the K+ binding site. We found that the polarity of the residue 113 is central in the partition of K+ into its site and that the substitution of Thr for Leu changes the ion selectivity for the monovalent cation with minor changes in the binding of the substrates. Therefore, Thr113 is instrumental in the selectivity of pyruvate kinase for K+.


Subject(s)
Potassium/metabolism , Pyruvate Kinase/chemistry , Pyruvate Kinase/metabolism , Adenosine Diphosphate/metabolism , Animals , Binding Sites , Catalytic Domain , Dimethyl Sulfoxide/metabolism , Enzyme Activation , Ions , Magnesium/metabolism , Models, Molecular , Muscles/enzymology , Mutant Proteins/metabolism , Phosphoenolpyruvate/metabolism , Rabbits , Substrate Specificity , Thermodynamics , Water/metabolism
5.
Mol Microbiol ; 93(3): 521-38, 2014 Aug.
Article in English | MEDLINE | ID: mdl-24942885

ABSTRACT

The probiotic Lactobacillus casei catabolizes galacto-N-biose (GNB) and lacto-N-biose (LNB) by using a transport system and metabolic routes different from those of Bifidobacterium. L. casei contains a gene cluster, gnbREFGBCDA, involved in the metabolism of GNB, LNB and also N-acetylgalactosamine. Inactivation of gnbC (EIIC) or ptsI (Enzyme I) of the phosphoenolpyruvate : sugar phosphotransferase system (PTS) prevented the growth on those three carbohydrates, indicating that they are transported and phosphorylated by the same PTS(Gnb) . Enzyme activities and growth analysis with knockout mutants showed that GnbG (phospho-ß-galactosidase) hydrolyses both disaccharides. However, GnbF (N-acetylgalactosamine-6P deacetylase) and GnbE (galactosamine-6P isomerase/deaminase) are involved in GNB but not in LNB fermentation. The utilization of LNB depends on nagA (N-acetylglucosamine-6P deacetylase), showing that the N-acetylhexosamine moieties of GNB and LNB follow different catabolic routes. A lacAB mutant (galactose-6P isomerase) was impaired in GNB and LNB utilization, indicating that their galactose moiety is channelled through the tagatose-6P pathway. Transcriptional analysis showed that the gnb operon is regulated by substrate-specific induction mediated by the transcriptional repressor GnbR, which binds to a 26 bp DNA region containing inverted repeats exhibiting a 2T/2A conserved core. The data represent the first characterization of novel metabolic pathways for human milk oligosaccharides and glycoconjugate structures in Firmicutes.


Subject(s)
Acetylglucosamine/analogs & derivatives , Disaccharides/metabolism , Lacticaseibacillus casei/genetics , Lacticaseibacillus casei/metabolism , Milk, Human/chemistry , Mucous Membrane/chemistry , Multigene Family , Phosphoenolpyruvate/metabolism , Acetylglucosamine/metabolism , Bacterial Proteins/metabolism , Galactose/metabolism , Gene Expression Profiling , Gene Knockout Techniques , Genes, Bacterial , Humans , Mutation , Operon , Polysaccharides , Real-Time Polymerase Chain Reaction , beta-Galactosidase/genetics
6.
Plant Physiol Biochem ; 49(6): 646-53, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21398135

ABSTRACT

Two phosphoenolpyruvate carboxykinase (PEPCK, EC 4.1.1.49) isoforms of 74 and 65 kDa were found to coexist in vivo in pineapple leaves, a constitutive Crassulacean Acid Metabolism plant. The 65 kDa form was not the result of proteolytic cleavage of the larger form since extraction methods reported to prevent PEPCK proteolysis in other plant tissues failed to yield a single immunoreactive PEPCK polypeptide in leaf extracts. In this work, the smaller form of 65 kDa was purified to homogeneity and physically and kinetically characterized and showed parameters compatible with a fully active enzyme. The specific activity was nearly twice higher for decarboxylation of oxaloacetate when compared to carboxylation of phosphoenolpyruvate. Kinetic parameters fell within the range of those estimated for other plant PEPCKs. Its activity was affected by several metabolites, as shown by inhibition by 3-phosphoglycerate, citrate, malate, fructose-1,6-bisphosphate, l-asparagine and activation of the decarboxylating activity by succinate. A break in the Arrhenius plot at about 30°C indicates that PEPCK structure is responsive to changes in temperature. The results indicate that pineapple leaves contain two PEPCK forms. The biochemical characterization of the smaller isoform performed in this work suggests that it could participate in both carbon and nitrogen metabolism in vivo by acting as a decarboxylase.


Subject(s)
Ananas/enzymology , Phosphoenolpyruvate Carboxylase/isolation & purification , Plant Proteins/isolation & purification , Decarboxylation , Oxaloacetic Acid/metabolism , Phosphoenolpyruvate/metabolism , Phosphoenolpyruvate Carboxylase/chemistry , Photosynthesis/physiology , Plant Leaves/chemistry , Plant Proteins/chemistry , Protein Isoforms , Temperature
7.
Biochimie ; 86(6): 357-62, 2004 Jun.
Article in English | MEDLINE | ID: mdl-15358051

ABSTRACT

Saccharomyces cerevisiae phosphoenolpyruvate (PEP) carboxykinase is a key enzyme of the gluconeogenic pathway and catalyzes the decarboxylation of oxaloacetate and transfer of the gamma-phosphoryl group of ATP to yield PEP, ADP, and CO2 in the presence of a divalent metal ion. Previous experiments indicate that mutation of amino acid residues at metal site 1 decrease the enzyme catalytic efficiency and the affinity of the protein for PEP, evidencing the relevance of hydrogen-bond interactions between PEP and water molecules of the first coordination sphere of the metal ion for catalysis [Biochemistry 41 (2002) 12763]. To further understand the function of amino acid residues located in the PEP binding site, we have now addressed the catalytic importance of Arg70, whose guanidinium group is close to the PEP carboxyl group. Arg70 mutants of PEP carboxykinase were prepared, and almost unaltered kinetic parameters were found for the Arg70Lys PEP carboxykinase, while a decrease in 4-5 orders of magnitude for the catalytic efficiency was detected for the Arg70Gln and Arg70Met altered enzymes. To evaluate the enzyme interaction with PEP, the phosphopyridoxyl-derivatives of wild type, Arg70Lys, Arg70Gln, and Arg70Met S. cerevisiae PEP carboxykinase were prepared, and the change in the fluorescence emission of the probe upon PEP binding was used to obtain the dissociation equilibrium constant of the corresponding derivatized enzyme-PEP-Mn2+ complex. The titration experiments showed that a loss in 2.1 kcal/mol in PEP binding affinity is produced in the Arg70Met and Arg70Gln mutant enzymes. It is proposed that the electrostatic interaction between the guanidinium group of Arg70 and the carboxyl group of PEP is important for PEP binding and for further steps in catalysis.


Subject(s)
Arginine/metabolism , Phosphoenolpyruvate Carboxykinase (ATP)/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Adenosine Diphosphate/metabolism , Amino Acid Substitution , Catalysis , Catalytic Domain , Kinetics , Mutagenesis, Site-Directed , Phosphoenolpyruvate/metabolism , Phosphoenolpyruvate Carboxykinase (ATP)/chemistry , Phosphoenolpyruvate Carboxykinase (ATP)/genetics , Saccharomyces cerevisiae Proteins/chemistry , Saccharomyces cerevisiae Proteins/genetics , Thermodynamics
8.
Int J Biochem Cell Biol ; 36(5): 861-9, 2004 May.
Article in English | MEDLINE | ID: mdl-15006638

ABSTRACT

Saccharomyces cerevisiae phosphoenolpyruvate (PEP) carboxykinase is a key enzyme of the gluconeogenic pathway and catalyzes the decarboxylation of oxaloacetate and transfer of the gamma-phosphoryl group of ATP to yield PEP, ADP, and CO(2) in the presence of a divalent metal ion. Previous experiments have shown that mutation of amino acid residues at metal site 1 decrease the steady-state affinity of the enzyme for PEP, suggesting interaction of PEP with the metal ion [Biochemistry 41 (2002) 12763]. To more completely understand this enzyme interactions with substrate ligands, we have prepared the phosphopyridoxyl (P-pyridoxyl)-derivatives of wild type, Lys213Arg, and His233Gln S. cerevisiae PEP carboxykinase and used the changes in the fluorescence probe to determine the dissociation equilibrium constants of PEP, ATPMn(2-), and ADPMn(1-) from the corresponding derivatized enzyme-Mn(2+) complexes. Homology modeling of P-pyridoxyl-PEP carboxykinase and P-pyridoxyl-PEP carboxykinase-substrate complexes agree with experimental evidence indicating that the P-pyridoxyl group does not interfere with substrate binding. ATPMn(2-) binding is 0.8kcalmol(-1) more favorable than ADPMn(1-) binding to wild type P-pyridoxyl-enzyme. The thermodynamic data obtained in this work indicate that PEP binding is 2.3kcalmol(-1) and 3.2kcalmol(-1) less favorable for the Lys213Arg and His233Gln mutant P-pyridoxyl-PEP carboxykinases than for the wild type P-pyridoxyl-enzyme, respectively. The possible relevance of N and O ligands for Mn(2+) in relation to PEP binding and catalysis is discussed.


Subject(s)
Phosphoenolpyruvate Carboxykinase (ATP)/chemistry , Phosphoenolpyruvate Carboxykinase (ATP)/metabolism , Phosphoenolpyruvate/metabolism , Saccharomyces cerevisiae/enzymology , Amino Acid Substitution , Mutation , Phosphoenolpyruvate Carboxykinase (ATP)/genetics , Protein Binding , Spectrometry, Fluorescence , Staining and Labeling , Structural Homology, Protein , Substrate Specificity
9.
Exp Parasitol ; 106(1-2): 11-21, 2004.
Article in English | MEDLINE | ID: mdl-15013784

ABSTRACT

We report the kinetic characterization of a previously unidentified pyruvate kinase (PK) activity in extracts from Entamoeba histolytica trophozoites. This activity was about 74% of the activity of pyruvate phosphate dikinase. EhPK differed from most PKs in that its pH optimum was 5.5-6.5 and was inhibited by high PEP concentrations (1-5mM); these are concentrations at which PK is usually assayed. The optimal temperature was above 40 degrees C with negligible activity below 20 degrees C. EhPK exhibited hyperbolic kinetics with respect to both PEP (K(m) = 0.018 mM) and ADP (K(m) = 1.05 mM). However, it exhibited a sigmoidal behavior with respect to PEP at sub-saturating ADP concentrations. EhPK did not require monovalent cations for activity. Fructose-1,6 bisphosphate was a potent non-essential activator; it increased the affinity for ADP without modification of the V(max) or the affinity for PEP. Phosphate, citrate, malate, and alpha-ketoglutarate significantly inhibited EhPK activity. A putative EhPK gene fragment found in EhDNA was analyzed. The data indicate that E. histolytica trophozoites contain an active PK, which might contribute to the generation of glycolytic ATP for parasite survival.


Subject(s)
Entamoeba histolytica/enzymology , Pyruvate Kinase/metabolism , Adenosine Diphosphate/metabolism , Amino Acid Sequence , Animals , Cloning, Molecular , Cricetinae , Electrophoresis, Polyacrylamide Gel , Entamoeba histolytica/genetics , Hydrogen-Ion Concentration , Kinetics , Liver Abscess, Amebic/parasitology , Molecular Sequence Data , Phosphoenolpyruvate/metabolism , Pyruvate Kinase/chemistry , Pyruvate Kinase/genetics , Pyruvate, Orthophosphate Dikinase/metabolism , Rabbits , Sequence Alignment , Temperature
10.
Microbiology (Reading) ; 149(Pt 7): 1687-1698, 2003 Jul.
Article in English | MEDLINE | ID: mdl-12855720

ABSTRACT

Bacillus sphaericus, a bacterium of biotechnological interest due to its ability to produce mosquitocidal toxins, is unable to use sugars as carbon source. However, ptsHI genes encoding HPr and EI proteins belonging to a PTS were cloned, sequenced and characterized. Both HPr and EI proteins were fully functional for phosphoenolpyruvate-dependent transphosphorylation in complementation assays using extracts from Staphylococcus aureus mutants for one of these proteins. HPr(His(6)) was purified from wild-type and a Ser46/Gln mutant of B. sphaericus, and used for in vitro phosphorylation experiments using extracts from either B. sphaericus or Bacillus subtilis as kinase source. The results showed that both phosphorylated forms, P-Ser46-HPr and P-His15-HPr, could be obtained. The findings also proved indirectly the existence of an HPr kinase activity in B. sphaericus. The genetic structure of these ptsHI genes has some unusual features, as they are co-transcribed with genes encoding metabolic enzymes related to N-acetylglucosamine (GlcNAc) catabolism (nagA, nagB and an undetermined orf2). In fact, this bacterium was able to utilize this amino sugar as carbon and energy source, but a ptsH null mutant had lost this characteristic. Investigation of GlcNAc uptake and streptozotocin inhibition in both a wild-type and a ptsH null mutant strain led to the proposal that GlcNAc is transported and phosphorylated by an EII(Nag) element of the PTS, as yet uncharacterized. In addition, GlcNAc-6-phosphate deacetylase and GlcN-6-phosphate deaminase activities were determined; both were induced in the presence of GlcNAc. These results, together with the authors' recent findings of the presence of a phosphofructokinase activity, are strongly indicative of a glycolytic pathway in B. sphaericus. They also open new possibilities for genetic improvements in industrial applications.


Subject(s)
Acetylglucosamine/metabolism , Bacillus/metabolism , Bacterial Proteins , Phosphoenolpyruvate Sugar Phosphotransferase System/metabolism , Adenosine Triphosphate/metabolism , Bacillus/genetics , Base Sequence , Biological Transport, Active , Cloning, Molecular , DNA, Bacterial/genetics , Genes, Bacterial , Genetic Complementation Test , Molecular Sequence Data , Multigene Family , Mutagenesis, Site-Directed , Phosphoenolpyruvate/metabolism , Phosphoenolpyruvate Sugar Phosphotransferase System/genetics , Phosphotransferases (Nitrogenous Group Acceptor)/genetics , Phosphotransferases (Nitrogenous Group Acceptor)/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Staphylococcus aureus/genetics , Staphylococcus aureus/metabolism , Transcription, Genetic
11.
Appl Microbiol Biotechnol ; 60(5): 547-55, 2003 Jan.
Article in English | MEDLINE | ID: mdl-12536254

ABSTRACT

Osmotic stress constitutes a major bacterial stress factor in the soil and during industrial fermentation. In this paper, we quantified the metabolic response, in terms of metabolic flux redistribution, of a lysine-overproducing strain of Corynebacterium glutamicum grown under continuous culture, to gradually increasing osmolality. Oxygen and carbon dioxide evolution rates, and the changes in concentration of extracellular, as well as intracellular, metabolites were measured throughout the osmotic gradient. The metabolic fluxes were estimated from these measurements and from the mass balance constraints at each metabolite-node of the assumed metabolic reaction network. Our results show that formation rates of compatible solutes--trehalose first and proline at a later stage of the gradient--increased with osmotic stress to equilibrate the external osmotic pressure. Estimated flux distributions indicate that the observed increase in the glucose specific uptake rate with osmotic stress is channeled through the main energy generating pathways-- glycolysis and the tricarboxylic acid cycle--while the flux through the pentose phosphate pathway remains constant throughout the gradient. This results in a significant increase in the net specific ATP production rate, which may possibly be used to support the higher energy requirements required for cellular maintenance at high osmolalities. Finally, nodal analysis confirmed that the PEP/pyruvate node is essentially rigid and that the glucose-6-phosphate, oxaloacetate and alpha-ketoglutarate nodes are flexible and therefore adaptable to changes in osmotic pressure in C. glutamicum.


Subject(s)
Corynebacterium/metabolism , Adenosine Triphosphate/metabolism , Amino Acids/classification , Amino Acids/metabolism , Biological Transport , Biomass , Cells, Cultured , Corynebacterium/classification , Culture Media/classification , Glucose-6-Phosphate/metabolism , Ketoglutaric Acids/metabolism , Kinetics , Osmolar Concentration , Osmotic Pressure , Oxaloacetic Acid/metabolism , Phenotype , Phosphoenolpyruvate/metabolism , Sodium Chloride/metabolism
12.
J Protein Chem ; 21(7): 443-5, 2002 Oct.
Article in English | MEDLINE | ID: mdl-12523647

ABSTRACT

Anaerobiospirillum succiniciproducens His225Gln, Asp262Asn, Asp263Asn, and Thr249Asn phosphoenolpyruvate carboxykinases were analyzed for their oxaloacetate decarboxylase, and pyruvate kinase-like activities. The His225Gln and Asp263Asn enzymes showed increased Km values for Mn2+ and PEP compared with the native enzyme, suggesting a role of His225 and Asp263 in Mn2+ and PEP binding. No mayor alterations in Km values for oxaloacetate were detected for the varied enzymes. Alterations of His225, Asp262, Asp263, or Thr249, however, did not affect the Vmax of the secondary activities as much as they affected the Vmax for the main reaction. The results presented in this communication suggest different rate-limiting steps for the primary reaction and the secondary activities.


Subject(s)
Carboxy-Lyases/metabolism , Phosphoenolpyruvate Carboxykinase (ATP)/genetics , Phosphoenolpyruvate Carboxykinase (ATP)/metabolism , Phosphoenolpyruvate Carboxykinase (GTP)/genetics , Phosphoenolpyruvate Carboxykinase (GTP)/metabolism , Proteobacteria/enzymology , Pyruvate Kinase/metabolism , Adenosine Diphosphate/metabolism , Amino Acid Substitution , Binding Sites , Catalysis , Kinetics , Manganese/chemistry , Manganese/metabolism , Phosphoenolpyruvate/metabolism , Proteobacteria/genetics
13.
Biochem Biophys Res Commun ; 271(1): 244-9, 2000 Apr 29.
Article in English | MEDLINE | ID: mdl-10777710

ABSTRACT

A mathematical model that includes biochemical interactions among the PTS system, phosphofructokinase (PFK), and pyruvate kinase (PK) is used to evaluate the dynamic behavior of the glycolytic pathway of Escherichia coli under steady-state conditions. The influence of ADP, phosphoenolpyruvate (PEP), and fructose-6-phosphate (F6P) on the dynamic regulation of this pathway is also analyzed. The model shows that the dynamic behavior of the system is affected significantly depending on whether ADP, PEP, or F6P is considered constant a steady state. Sustained oscillations are observed only when dADP/dt not equal 0 and completely suppressed if dADP/dt = 0 at any steady-state value. However, when PEP or F6P is constant, the system evolves toward the formation of stable limit cycles with periods ranging from 0.2 min to hours.


Subject(s)
Adenosine Diphosphate/physiology , Escherichia coli/physiology , Adenosine Triphosphate/physiology , Dose-Response Relationship, Drug , Escherichia coli/metabolism , Fructosephosphates/metabolism , Glycolysis , Kinetics , Models, Biological , Phosphoenolpyruvate/metabolism , Time Factors
14.
Biochim Biophys Acta ; 1337(2): 166-74, 1997 Feb 08.
Article in English | MEDLINE | ID: mdl-9048893

ABSTRACT

Escherichia coli and Saccharomyces cerevisiae phospho enol pyruvate (PEP) carboxykinases are inactivated by diethylpyrocarbonate (DEP). Inactivation follows pseudo-first-order kinetics and exhibits a second order rate constant of 0.8 M-1 s-1 for the bacterial enzyme and of 3.3 M-1 s-1 for the yeast carboxykinase. A mixture of ADP + PEP + MnCl2 protects against inactivation by DEP, suggesting that residues within the active site are being modified. After digestion of the modified proteins with trypsin, the labeled peptides were isolated by reverse-phase high-performance liquid chromatography and sequenced by Edman degradation. His-271 of E. coli carboxykinase and His-273 of the yeast enzyme were identified as the reactive amino-acid residues. The modified histidine residues occupy equivalent positions in these enzymes, and they are located in a highly conserved region of all ATP-dependent phospho enol pyruvate carboxykinases described so far.


Subject(s)
Escherichia coli/enzymology , Phosphoenolpyruvate Carboxykinase (GTP)/chemistry , Saccharomyces cerevisiae/enzymology , Adenosine Diphosphate/metabolism , Amino Acid Sequence , Binding Sites , Conserved Sequence , Diethyl Pyrocarbonate/pharmacology , Enzyme Inhibitors/pharmacology , Escherichia coli/genetics , Histidine/chemistry , Molecular Sequence Data , Peptide Fragments/chemistry , Peptide Fragments/genetics , Phosphoenolpyruvate/metabolism , Phosphoenolpyruvate Carboxykinase (GTP)/antagonists & inhibitors , Phosphoenolpyruvate Carboxykinase (GTP)/genetics , Saccharomyces cerevisiae/genetics , Sequence Homology, Amino Acid , Species Specificity , Substrate Specificity
15.
Arch Latinoam Nutr ; 46(2): 89-96, 1996 Jun.
Article in Spanish | MEDLINE | ID: mdl-9239284

ABSTRACT

Nutrients can regulate, directly or indirectly, the pathway of expression of genes coding for enzymes involved in metabolic pathways related to the utilization of carbohydrates, lipids and amino acids. On the other hand, nutrients such as carbohydrates, lipids or amino acids can generate an specific hormonal state in the organism, and hormones are the mediators throughout which some genes are activated. The objective of the present review is to show some specific examples of dietary and hormonal regulation of enzyme genes involved in the metabolism of carbohydrates (phosphoenol pyruvate carboxykinase), lipids (malic enzyme) and amino acids (serine dehydratase).


Subject(s)
Enzymes/genetics , Food , Gene Expression Regulation , L-Serine Dehydratase/metabolism , Lipid Metabolism , Phosphoenolpyruvate/metabolism , Hormones , RNA
16.
Biochim Biophys Acta ; 1292(1): 188-96, 1996 Jan 04.
Article in English | MEDLINE | ID: mdl-8547343

ABSTRACT

We studied the transition metal ion requirements for activity and sulfhydryl group reactivity in phospho enol pyruvate carboxykinase (PEP-carboxykinase; ATP:oxaloacetate carboxylase (transphosphorylating), EC 4.1.1.49), a key enzyme in the energy metabolism of the protozan parasite Trypanosoma (Schizotrypanum) cruzi. As for other PEP-carboxykinases this enzyme has a strict requirement of transition metal ions for activity, even in the presence of excess Mg2+ ions for the carboxylation reaction; the order of effectiveness of these ions as enzyme activators was: Co2+ > Mn2+ > Cd2+ > Ni2+ >> Fe2+ > VO2+, while Zn2+ and Ca2+ had no activating effects. When we investigated the effect of the varying type or concentration of the transition metal ions on the kinetic parameters of the enzyme the results suggested that the stimulatory effects of the transition metal center were mostly associated with the activation of the relatively inert CO2 substrate. The inhibitory effects of 3-mercaptopicolinic acid (3MP) on the enzyme were found to depend on the transition metal ion activator: for the Mn(2+)-activated enzyme the inhibition was purely non-competitive (Kii = Kis) towards all substrates, while for the Co(2+)-activated enzyme the inhibitor was much less effective, produced a mixed-type inhibition and affected differentially the interaction of the enzyme with its substrates. The modification of a single, highly reactive, cysteine per enzyme molecule by 5,5'-dithiobis (2-nitro-benzoate) (DTNB) lead ton an almost complete inhibition of Mn(2+)-activated T. cruzi PEP-carboxykinase; however, in contrast with the results of previous studies in vertebrate and yeast enzymes, the substrate ADP slowed the chemical modification and enzyme inactivation but did not prevent it. PEP and HCO3- had no significant effect on the rate or extent of the enzyme inactivation. The kinetics of the enzyme inactivation by DTNB was also dependent on the transition metal activator, being much slower for the Co(2+)-activated enzyme than for its Mn(2+)-activated counterpart. When the bulkier but more hydrophobic reagent N-(7-dimethylamino-4-methylcoumarinyl)maleimide (DACM) was used the enzyme was slowly and incompletely inactivated in the presence of Mn2+ and ADP afforded almost complete protection from inactivation; in the presence of Co2+ the enzyme was completely resistant to inactivation. Taken together, our results indicate that the parasite enzyme has a specific requirement of transition metal ions for activity and that they modulate the reactivity of a single, essential thiol group, different from the hyperreactive cysteines present in vertebrate or yeast enzymes.


Subject(s)
Metals/pharmacology , Phosphoenolpyruvate Carboxykinase (GTP)/metabolism , Trypanosoma cruzi/enzymology , Adenosine Diphosphate/metabolism , Animals , Carbon Dioxide/metabolism , Cysteine/metabolism , Dithionitrobenzoic Acid/pharmacology , Enzyme Activation , Enzyme Inhibitors/pharmacology , Kinetics , Magnesium/pharmacology , Maleimides/pharmacology , Manganese/pharmacology , Phosphoenolpyruvate/metabolism , Phosphoenolpyruvate Carboxykinase (GTP)/antagonists & inhibitors , Picolinic Acids , Sulfhydryl Compounds/metabolism , Sulfhydryl Reagents/pharmacology
17.
Biol Res ; 26(1-2): 81-8, 1993.
Article in English | MEDLINE | ID: mdl-7670550

ABSTRACT

We review the development of our knowledge and interpretations of the intermediary metabolism of Trypanosoma (Schizotrypanum) cruzi. Already in the 1950's it was clearly established that when this organism was exposed to large external concentrations of carbohydrates it was unable to catabolize them completely, even in the presence of oxygen, producing a mixture of CO2, dicarboxylic acids (succinic, malic) and alanine as end products. However, subsequent work tended to emphasize such paradigmatic features as a full complement of glycolytic enzymes in all stages of the life cycle of the parasite, a functional Kreb's cycle, a cytochrome-dependent electron transport chain and phosphorylative oxidation which suggested that T. cruzi had the basic metabolic properties of classical glucose-utilizing cells, in contrast with the degenerate glycolytic metabolism of bloodstream African trypanosomes. Only in the 1980's interest revived on the how and why of the incomplete carbohydrate catabolism by this parasite. The primary reason for this anomaly was found to be the presence of a constitutive phospho-enol-pyruvate carboxykinase (PEPCK, ATP-dependent, E.C.4.1.1.49), present in all stages of the parasite's life cycle, and the lack of regulation of the glycolytic route at its classical control points, hexokinase and phosphofructokinase. On the other hand, the presence of two distinct glutamate dehydrogenases (NAD+ and NADP(+)-dependent), the former being strictly regulated by the energy charge of the cell and the Krebs' cycle activity, indicated that amino acids can be a primary source of energy for this organism.(ABSTRACT TRUNCATED AT 250 WORDS)


Subject(s)
Trypanosoma cruzi/metabolism , Amino Acids/metabolism , Animals , Carbohydrate Metabolism , Glucose/metabolism , Oxidation-Reduction , Phosphoenolpyruvate/metabolism , Phosphoenolpyruvate Carboxykinase (GTP)/metabolism , Trypanosoma cruzi/enzymology
18.
Biol. Res ; 26(1/2): 81-8, 1993. tab, graf
Article in English | LILACS | ID: lil-228628

ABSTRACT

We review the development of our knowledge and interpretations of the intermediary metabolism of Trypanosoma (Schizotrypanum) cruzi. Already in the 1950's it was clearly established that when this organism was exposed to large external concentrations of carbohydrates it was unable to catabolize them completely, even in the presence of oxygen, producing a mixture of CO2, dicarboxylic acids (succinic, malic) and alanine as end products. However, subsequent work tended to emphasize such paradigmatic features as a full complement of glycolytic enzymes in all stages of the life cycle of the parasite, a functional Kreb's cycle, a cytochrome-dependent electron transport chain and phosphorylative oxidation which suggested that T. cruzi had the basic metabolic properties of classical glucose-utilizing cells, in contrast with the degenerate glycolytic metabolism of bloodstream African trypanosomes. Only in the 1980's interest revived on the how and why of the incomplete carbohydrate catabolism by this parasite. The primary reason for this anomaly was found to be the presence of a constitutive phospho-enol-pyruvate carboxykinase (PEPCK, ATP-dependent, E.C.4.1.1.49), present in all stages of the parasite's life cycle, and the lack of regulation of the glycolytic route at its classical control points, hexokinase and phosphofructokinase. On the other hand, the presence of two distinct glutamate dehydrogenases (NAD+ and NADP(+)-dependent), the former being strictly regulated by the energy charge of the cell and the Krebs' cycle activity, indicated that amino acids can be a primary source of energy for this organism.(ABSTRACT TRUNCATED AT 250 WORDS)


Subject(s)
Animals , Trypanosoma cruzi/metabolism , Amino Acids/metabolism , Carbohydrates/metabolism , Glucose/metabolism , Oxidation-Reduction , Phosphoenolpyruvate Carboxykinase (GTP)/metabolism , Phosphoenolpyruvate/metabolism , Trypanosoma cruzi/enzymology
19.
Arch Biochem Biophys ; 276(1): 180-90, 1990 Jan.
Article in English | MEDLINE | ID: mdl-2297221

ABSTRACT

Phenylphosphate, a structural analog of phosphoenolpyruvate (PEP), was found to be an activator of phosphoenolpyruvate carboxylase (PEP carboxylase) purified from maize leaves. This finding suggested the presence in the enzyme of a regulatory site, to which PEP could bind. We carried out kinetic studies on this enzyme using controlled concentrations of free PEP and of Mg-PEP complex and developed a theoretical kinetic model of the reaction. In summary, the main conclusions drawn from our results, and taken as assumptions of the model, were the following: (i) The affinity of the active site for the complex Mg-PEP is much higher than that for free PEP and Mg2+ ions, and therefore it can be considered that the preferential substrate of the PEP-catalyzed reaction is Mg-PEP. (ii) The enzyme has a regulatory site specific for free PEP, to which Mg2+ ions can not bind. (iii) The binding of free PEP, or an analog molecule, to this regulatory site yields a modified enzyme that has much lower apparent Km values and apparent Vmax values than the unmodified enzyme. So, free PEP behaves as an excellent activator of the reaction at subsaturating substrate concentrations, and as an inhibitor at saturating substrate concentrations. These findings may have important physiological implications on the regulation of the PEP carboxylase in vivo activity and, consequently, of the C4 pathway, since increased reaction rates would be obtained when the concentration of PEP rises, even at limiting Mg2+ concentrations.


Subject(s)
Carboxy-Lyases/metabolism , Phosphoenolpyruvate Carboxylase/metabolism , Phosphoenolpyruvate/metabolism , Plants/enzymology , Binding Sites , Kinetics , Mathematics , Models, Theoretical , Phosphoenolpyruvate Carboxylase/isolation & purification , Zea mays/enzymology
20.
Biochem J ; 253(1): 217-22, 1988 Jul 01.
Article in English | MEDLINE | ID: mdl-3421944

ABSTRACT

The analogue (Z)-phosphoenol-3-fluoropyruvate [(Z)-3-fluoro-2-(phosphono-oxy)propenoic acid] was tested as substrate of maize leaf phosphoenolpyruvate carboxylase. Studies with NaH14CO3 indicate that the analogue is carboxylated by the enzyme. However, this reaction accounts for only one-tenth of the activity measured by Pi liberation. The rest of the analogue is merely dephosphorylated. This is the first analogue for which both carboxylation and dephosphorylation have been observed.


Subject(s)
Carboxy-Lyases/metabolism , Phosphoenolpyruvate Carboxylase/metabolism , Phosphoenolpyruvate/analogs & derivatives , Zea mays/enzymology , Bicarbonates/metabolism , Carbon Radioisotopes , Chromatography, High Pressure Liquid , Hydrazones/metabolism , Phosphoenolpyruvate/metabolism , Spectrophotometry
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