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1.
Nat Commun ; 13(1): 621, 2022 02 02.
Article in English | MEDLINE | ID: mdl-35110538

ABSTRACT

The guanosine analog AT-527 represents a promising candidate against Severe Acute Respiratory Syndrome coronavirus type 2 (SARS-CoV-2). AT-527 recently entered phase III clinical trials for the treatment of COVID-19. Once in cells, AT-527 is converted into its triphosphate form, AT-9010, that presumably targets the viral RNA-dependent RNA polymerase (RdRp, nsp12), for incorporation into viral RNA. Here we report a 2.98 Å cryo-EM structure of the SARS-CoV-2 nsp12-nsp7-nsp82-RNA complex, showing AT-9010 bound at three sites of nsp12. In the RdRp active-site, one AT-9010 is incorporated at the 3' end of the RNA product strand. Its modified ribose group (2'-fluoro, 2'-methyl) prevents correct alignment of the incoming NTP, in this case a second AT-9010, causing immediate termination of RNA synthesis. The third AT-9010 is bound to the N-terminal domain of nsp12 - known as the NiRAN. In contrast to native NTPs, AT-9010 is in a flipped orientation in the active-site, with its guanine base unexpectedly occupying a previously unnoticed cavity. AT-9010 outcompetes all native nucleotides for NiRAN binding, inhibiting its nucleotidyltransferase activity. The dual mechanism of action of AT-527 at both RdRp and NiRAN active sites represents a promising research avenue against COVID-19.


Subject(s)
Antiviral Agents/chemistry , Antiviral Agents/pharmacology , Guanosine Monophosphate/analogs & derivatives , Phosphoramides/chemistry , Phosphoramides/pharmacology , RNA-Dependent RNA Polymerase/antagonists & inhibitors , SARS-CoV-2/enzymology , Viral Proteins/antagonists & inhibitors , Viral Proteins/metabolism , COVID-19/virology , Cryoelectron Microscopy , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Guanosine Monophosphate/chemistry , Guanosine Monophosphate/pharmacology , Humans , RNA-Dependent RNA Polymerase/chemistry , RNA-Dependent RNA Polymerase/genetics , RNA-Dependent RNA Polymerase/metabolism , SARS-CoV-2/chemistry , SARS-CoV-2/drug effects , SARS-CoV-2/genetics , Viral Proteins/genetics
2.
Nucleic Acids Res ; 49(16): 9026-9041, 2021 09 20.
Article in English | MEDLINE | ID: mdl-34417625

ABSTRACT

The PS modification enhances the nuclease stability and protein binding properties of gapmer antisense oligonucleotides (ASOs) and is one of very few modifications that support RNaseH1 activity. We evaluated the effect of introducing stereorandom and chiral mesyl-phosphoramidate (MsPA) linkages in the DNA gap and flanks of gapmer PS ASOs and characterized the effect of these linkages on RNA-binding, nuclease stability, protein binding, pro-inflammatory profile, antisense activity and toxicity in cells and in mice. We show that all PS linkages in a gapmer ASO can be replaced with MsPA without compromising chemical stability and RNA binding affinity but these designs reduced activity. However, replacing up to 5 PS in the gap with MsPA was well tolerated and replacing specific PS linkages at appropriate locations was able to greatly reduce both immune stimulation and cytotoxicity. The improved nuclease stability of MsPA over PS translated to significant improvement in the duration of ASO action in mice which was comparable to that of enhanced stabilized siRNA designs. Our work highlights the combination of PS and MsPA linkages as a next generation chemical platform for identifying ASO drugs with improved potency and therapeutic index, reduced pro-inflammatory effects and extended duration of effect.


Subject(s)
Oligonucleotides, Antisense/chemical synthesis , Therapeutic Index, Drug , Animals , HEK293 Cells , HeLa Cells , Humans , Liver/metabolism , Male , Mesylates/chemistry , Mice , Mice, Inbred C57BL , NIH 3T3 Cells , Oligonucleotides, Antisense/pharmacokinetics , Oligonucleotides, Antisense/toxicity , Phosphoramides/chemistry , Protein Binding , Tissue Distribution
3.
World J Microbiol Biotechnol ; 36(10): 155, 2020 Sep 20.
Article in English | MEDLINE | ID: mdl-32951077

ABSTRACT

Acephate is widely used in agriculture, but its poisonous metabolites and poor sorption characteristics make it a serious environmental pollutant and toxicant to human health. To screen novel bacteria for biodegradation of acephate and uncover its degradation pathway, a strain called NDZ that is capable of utilizing acephate as a sole carbon and energy source was isolated from severely contaminated cultivated land. The bacterium was identified as Bacillus paramycoides based on 16S rDNA sequence analyses. The growth and degradation capacities of B. paramycoides NDZ under different conditions were studied using optical density at 600 nm (OD600) and high-performance liquid chromatography (HPLC). The results showed that B. paramycoides NDZ can grow well with acephate as its sole carbon source (OD600 = 0.76), and degraded about 76% of acephate in mineral salt medium with an initial concentration of 500 mg/L within 48 h. The results of response surface methodology revealed the optimal conditions for degradation was 36 ℃ and pH 6.85 with 526 mg/L acephate. Gas chromatography-mass spectrometry showed that methamidophos was the main metabolite of B. paramycoides NDZ, different from the degradation products of high-temperature steam (121 °C, 103 kPa). Based on the detection of this intermediate, we inferred that acephate was degraded to methamidophos through hydrolysis of the amide linkage, after which methamidophos was degraded to some small molecules, which can be metabolized easily by the bacterium. In summary, B. paramycoides NDZ is a potentially useful bacterium for acephate degradation and remediation of contaminated soils.


Subject(s)
Bacillus/growth & development , Bacillus/isolation & purification , Organothiophosphorus Compounds/chemistry , Organothiophosphorus Compounds/isolation & purification , Phosphoramides/chemistry , Bacillus/classification , Bacillus/genetics , Biodegradation, Environmental , DNA, Bacterial/genetics , DNA, Ribosomal/genetics , Gas Chromatography-Mass Spectrometry , Hydrolysis , Metabolomics , RNA, Ribosomal, 16S/genetics , Soil Microbiology
4.
Angew Chem Int Ed Engl ; 59(22): 8451-8455, 2020 05 25.
Article in English | MEDLINE | ID: mdl-32101637

ABSTRACT

A catalytic diastereo- and enantioselective method for the preparation of complex tertiary homoallylic alcohols containing a vicinal quaternary carbon stereogenic center and a versatile alkenylboronic ester is disclosed. Transformations are promoted by 5 mol % of a readily available copper catalyst bearing a bulky monodentate phosphoramidite ligand, which is essential for attaining both high dr and er. Reactions proceed with a wide variety of ketones and allylic 1,1-diboronate reagents, which enables the efficient preparation of diverse array of molecular scaffolds.


Subject(s)
Alkenes/chemistry , Boron Compounds/chemistry , Copper/chemistry , Ketones/chemistry , Catalysis , Ligands , Phosphoramides/chemistry , Stereoisomerism
5.
J Hazard Mater ; 389: 122129, 2020 05 05.
Article in English | MEDLINE | ID: mdl-31972525

ABSTRACT

Novel green nanocomposite from mesoporous MCM-41 and Co3O4 was synthesized from rice husk based silica gel and using the green extract of Peach leaves as reducing reagent. The composite was labeled as RH-MCM-41/Co3O4 and characterized by different techniques as green photocatalyst in the degradation of Acephate pesticide under visible light illumination. The composite showed well developed spherical MCM-41 particles decorated by nano Co3O4 nanoparticles with stunning surface area and low bandgap energy (1.51 eV). The composite displayed superior photocatalytic activities in the oxidation of Acephate which reflected in a complete degradation of different concentrations of it after 40 min (50 mg/L), 60 min (100 mg/L), 100 min (150 mg/L) and 140 min (200 mg/L) using 0.25 g of the composite. The complete removal of the present TOC for treatment of 100 mg/L acephate was achieved using 0.25 g after 70 min reflecting the formation of intermediate compounds during the oxidation steps. The reported intermediate compounds are CH3C(O)NH2, CH3O(CH3S)P(O)NH2, (CH3O)2P(O)SCH3, CH3OP(O)(OH)2, CH3SS(O)2CH3, and (COOH)2. All the formed intermediate compounds were degraded under the visible light photocatalytic activity of RH-MCM-41/Co3O4 into NO3-, SO42-, PO43-, and CO2 as final products.


Subject(s)
Cobalt/chemistry , Nanocomposites/chemistry , Organothiophosphorus Compounds/chemistry , Oxides/chemistry , Pesticides/chemistry , Phosphoramides/chemistry , Silica Gel/chemistry , Silicon Dioxide/chemistry , Catalysis/radiation effects , Equipment Reuse , Hydrogen-Ion Concentration , Light , Metal Nanoparticles/chemistry , Oryza/chemistry , Oxidation-Reduction , Plant Leaves/chemistry , Prunus persica/chemistry , Silica Gel/chemical synthesis , Silicon Dioxide/chemical synthesis
6.
Int J Mol Sci ; 20(10)2019 May 15.
Article in English | MEDLINE | ID: mdl-31096579

ABSTRACT

An in silico analysis of the interaction between the complex-ligands of nine acetylcholinesterase (AChE) structures of Lepidopteran organisms and 43 organophosphorus (OPs) pesticides with previous resistance reports was carried out. To predict the potential resistance by structural modifications in Lepidoptera insects, due to proposed point mutations in AChE, a broad analysis was performed using computational tools, such as homology modeling and molecular docking. Two relevant findings were revealed: (1) Docking results give a configuration of the most probable spatial orientation of two interacting molecules (AChE enzyme and OP pesticide) and (2) a predicted ΔGb. The mutations evaluated in the form 1 acetylcholinesterase (AChE-1) and form 2 acetylcholinesterase (AChE-2) structures of enzymes do not affect in any way (there is no regularity of change or significant deviations) the values of the binding energy (ΔGb) recorded in the AChE-OPs complexes. However, the mutations analyzed in AChE are associated with a structural modification that causes an inadequate interaction to complete the phosphorylation of the enzyme.


Subject(s)
Acetylcholinesterase/chemistry , Acetylcholinesterase/genetics , Insecticide Resistance/drug effects , Insecticide Resistance/genetics , Lepidoptera/genetics , Organophosphorus Compounds/pharmacology , Pesticides/pharmacology , Point Mutation/drug effects , Animals , Computational Biology/methods , Computer Simulation , Lepidoptera/drug effects , Lepidoptera/enzymology , Molecular Docking Simulation , Organothiophosphorus Compounds/chemistry , Peptide Fragments , Phosphoramides/chemistry , Sequence Alignment , Structural Homology, Protein
7.
J Agric Food Chem ; 67(8): 2127-2138, 2019 Feb 27.
Article in English | MEDLINE | ID: mdl-30735374

ABSTRACT

The nickel-dependent enzyme urease represents a negative element for the efficiency of soil nitrogen fertilization as well as a virulence factor for a large number of pathogenic and antibiotic-resistant bacteria. The development of ever more efficient urease inhibitors demands knowledge of their modes of action at the molecular level. N-( n-Butyl)-phosphoric triamide (NBPTO) is the oxo-derivative of N-( n-butyl)-thiophosphoric triamide (NBPT), which is extensively employed in agriculture to increase the efficiency of urea-based fertilizers. The 1.45 Šresolution structure of the enzyme-inhibitor complex obtained upon incubation of Sporosarcina pasteurii urease (SPU) with NBPTO shows the presence of diamido phosphoric acid (DAP), generated upon enzymatic hydrolysis of NBPTO with the release of n-butyl amine. DAP is bound in a tridentate binding mode to the two Ni(II) ions in the active site of urease via two O atoms and an amide NH2 group, whereas the second amide group of DAP points away from the metal center into the active-site channel. The mobile flap modulating the size of the active-site cavity is found in a disordered closed-open conformation. A kinetic characterization of the NBPTO-based inhibition of both bacterial (SPU) and plant ( Canavalia ensiformis or jack bean, JBU) ureases, carried out by calorimetric measurements, indicates the occurrence of a reversible slow-inhibition mode of action. The latter is characterized by a very small value of the equilibrium dissociation constant of the urease-DAP complex caused, in turn, by the large rate constant for the formation of the enzyme-inhibitor complex. The much greater capability of NBPTO to inhibit urease, as compared with that of NBPT, is thus not caused by the presence of a P═O moiety versus a P═S moiety, as previously suggested, but rather by the readiness of NBPTO to react with urease without the need to convert one of the P-NH2 amide moieties to its P-OH acid derivative, as in the case of NBPT. The latter process is indeed characterized by a very small equilibrium constant that reduces drastically the concentration of the active form of the inhibitor in the case of NBPT. This indicates that high-efficiency phosphoramide-based urease inhibitors must have at least one O atom bound to the central P atom in order for the molecule to efficiently and rapidly bind to the dinickel center of the enzyme.


Subject(s)
Enzyme Inhibitors/chemistry , Phosphoramides/chemistry , Urease/antagonists & inhibitors , Catalytic Domain , Fertilizers/analysis , Kinetics , Models, Molecular , Urease/chemistry
8.
Bioorg Chem ; 86: 482-493, 2019 05.
Article in English | MEDLINE | ID: mdl-30772649

ABSTRACT

In an attempt to achieve a new class of phosphoramide inhibitors with high potency and resistance to the hydrolysis process against urease enzyme, we synthesized a series of bisphosphoramide derivatives (01-43) and characterized them by various spectroscopic techniques. The crystal structures of compounds 22 and 26 were investigated using X-ray crystallography. The inhibitory activities of the compounds were evaluated against the jack bean urease and were compared to monophosphoramide derivatives and other known standard inhibitors. The compounds containing aromatic amines and their substituted derivatives exhibited very high inhibitory activity in the range of IC50 = 3.4-1.91 × 10-10 nM compared with monophosphoramides, thiourea, and acetohydroxamic acid. It was also found that derivatives with PO functional groups have higher anti-urease activity than those with PS functional groups. Kinetics and docking studies were carried out to explore the binding mechanism that showed these compounds follow a mixed-type mechanism and, due to their extended structures, can cover the entire binding pocket of the enzyme, reducing the formation of the enzyme-substrate complex. The quantitative structure-activity relationship (QSAR) analysis also revealed that the interaction between the enzyme and inhibitor is significantly influenced by aromatic rings and PO functional groups. Collectively, the data obtained from experimental and theoretical studies indicated that these compounds can be developed as appropriate candidates for urease inhibitors in this field.


Subject(s)
Canavalia/enzymology , Enzyme Inhibitors/pharmacology , Phosphoramides/pharmacology , Quantitative Structure-Activity Relationship , Urease/antagonists & inhibitors , Crystallography, X-Ray , Dose-Response Relationship, Drug , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/chemistry , Kinetics , Molecular Docking Simulation , Molecular Structure , Phosphoramides/chemical synthesis , Phosphoramides/chemistry , Urease/metabolism
9.
Bioorg Med Chem ; 26(3): 551-565, 2018 02 01.
Article in English | MEDLINE | ID: mdl-29277307

ABSTRACT

A new family of thirteen phosphoramidate prodrugs (ProTides) of different 6-substituted-5-fluorouridine nucleoside analogues were synthesized and evaluated as potential anticancer agents. In addition, antiviral activity against Chikungunya (CHIKV) virus was evaluated using a cytopathic effect inhibition assay. Although a carboxypeptidase Y assay supported a putative mechanism of activation of ProTides built on 5-fluorouridine with such C6-modifications, the Hint docking studies revealed a compromised substrate-activity for the Hint phosphoramidase-type enzyme that is likely responsible for phosphoramidate bioactivation through P-N bond cleavage and free nucleoside 5'-monophosphate delivery. Our observations may support and explain to some extent the poor in vitro biological activity generally demonstrated by the series of 6-substituted-5-fluorouridine phosphoramidates (ProTides) and will be of guidance for the design of novel phosphoramidate prodrugs.


Subject(s)
Phosphoramides/chemical synthesis , Prodrugs/chemical synthesis , Uridine/analogs & derivatives , Antineoplastic Agents/chemical synthesis , Antineoplastic Agents/chemistry , Antineoplastic Agents/toxicity , Antiviral Agents/chemical synthesis , Antiviral Agents/chemistry , Antiviral Agents/pharmacology , Binding Sites , Cell Line, Tumor , Cell Survival/drug effects , Chikungunya virus/physiology , Drug Screening Assays, Antitumor , Humans , Molecular Docking Simulation , Nerve Tissue Proteins/chemistry , Nerve Tissue Proteins/metabolism , Phosphoramides/chemistry , Phosphoramides/pharmacology , Prodrugs/chemistry , Prodrugs/pharmacology , Protein Structure, Tertiary , Structure-Activity Relationship , Uridine/chemical synthesis , Uridine/chemistry , Uridine/pharmacology , Virus Internalization/drug effects
10.
Molecules ; 22(12)2017 Dec 08.
Article in English | MEDLINE | ID: mdl-29292782

ABSTRACT

The formation of novel chiral bidentate phosphoroamides structures able to promote Lewis base-catalyzed Lewis acid-mediated reactions was investigated. Two different classes of phosphoroamides were synthetized: the first class presents a phthalic acid/primary diamine moiety, designed with the aim to perform a self-assembly recognition process through hydrogen bonds; the second one is characterized by the presence of two phosphoroamides as side arms connected to a central pyridine unit, able to chelate SiCl4 in a 2:1 adduct. These species were tested as organocatalysts in the stereoselective allylation of benzaldehyde and a few other aromatic aldehydes with allyl tributyltin in the presence of SiCl4 with good results. NMR studies confirm that only pyridine-based phosphoroamides effectively coordinate tetrachlorosilane and may lead to the generation of a self-assembled entity that would act as a promoter of the reaction. Although further work is necessary to clarify and confirm the formation of the hypothesized adduct, the study lays the foundation for the design and the synthesis of chiral supramolecular organocatalysts.


Subject(s)
Chlorides/chemistry , Phosphoramides/analogs & derivatives , Phosphoramides/chemistry , Silicon Compounds/chemistry , Aldehydes/chemistry , Catalysis , Hydrogen Bonding , Molecular Structure , Stereoisomerism , Structure-Activity Relationship , Trialkyltin Compounds/chemistry
11.
Drug Des Devel Ther ; 10: 2575-97, 2016.
Article in English | MEDLINE | ID: mdl-27574398

ABSTRACT

PURPOSE: Corticosteroids are effective in the management of a variety of disease states, such as several forms of neoplasia (leukemia and lymphoma), autoimmune conditions, and severe inflammatory responses. Molecular strategies that selectively "target" delivery of corticosteroids minimize or prevents large amounts of the pharmaceutical moiety from passively diffusing into normal healthy cell populations residing within tissues and organ systems. MATERIALS AND METHODS: The covalent immunopharmaceutical, dexamethasone-(C21-phosphoramide)-[anti-EGFR] was synthesized by reacting dexamethasone-21-monophosphate with a carbodiimide reagent to form a dexamethasone phosphate carbodiimide ester that was subsequently reacted with imidazole to create an amine-reactive dexamethasone-(C21-phosphorylimidazolide) intermediate. Monoclonal anti-EGFR immunoglobulin was combined with the amine-reactive dexamethasone-(C21-phosphorylimidazolide) intermediate, resulting in the synthesis of the covalent immunopharmaceutical, dexamethasone-(C21-phosphoramide)-[anti-EGFR]. Following spectrophotometric analysis and validation of retained epidermal growth factor receptor type 1 (EGFR)-binding avidity by cell-ELISA, the selective anti-neoplasic cytotoxic potency of dexamethasone-(C21-phosphoramide)-[anti-EGFR] was established by MTT-based vitality stain methodology using adherent monolayer populations of human pulmonary adenocarcinoma (A549) known to overexpress the tropic membrane receptors EGFR and insulin-like growth factor receptor type 1. RESULTS: The dexamethasone:IgG molar-incorporation-index for dexamethasone-(C21-phosphoramide)-[anti-EGFR] was 6.95:1 following exhaustive serial microfiltration. Cytotoxicity analysis: covalent bonding of dexamethasone to monoclonal anti-EGFR immunoglobulin did not significantly modify the ex vivo antineoplastic cytotoxicity of dexamethasone against pulmonary adenocarcinoma at and between the standardized dexamethasone equivalent concentrations of 10(-9) M and 10(-5) M. Rapid increases in antineoplastic cytotoxicity were observed at and between the dexamethasone equivalent concentrations of 10(-9) M and 10(-7) M where cancer cell death increased from 7.7% to a maximum of 64.9% (92.3%-35.1% residual survival), respectively, which closely paralleled values for "free" noncovalently bound dexamethasone. DISCUSSION: Organic chemistry reaction regimens were optimized to develop a multiphase synthesis regimen for dexamethasone-(C21-phosphoramide)-[anti-EGFR]. Attributes of dexamethasone-(C21-phosphoramide)-[anti-EGFR] include a high dexamethasone molar incorporation-index, lack of extraneous chemical group introduction, retained EGFR-binding avidity ("targeted" delivery properties), and potential to enhance long-term pharmaceutical moiety effectiveness.


Subject(s)
Adenocarcinoma/pathology , Antineoplastic Agents/pharmacology , Dexamethasone/analogs & derivatives , Drug Design , Lung Neoplasms/pathology , Phosphoramides/pharmacology , Adenocarcinoma/drug therapy , Antineoplastic Agents/chemical synthesis , Antineoplastic Agents/chemistry , Cell Death/drug effects , Cell Proliferation/drug effects , Dexamethasone/chemical synthesis , Dexamethasone/chemistry , Dexamethasone/pharmacology , Dose-Response Relationship, Drug , Drug Screening Assays, Antitumor , Humans , Lung Neoplasms/drug therapy , Phosphoramides/chemical synthesis , Phosphoramides/chemistry , Structure-Activity Relationship , Tumor Cells, Cultured
12.
Molecules ; 21(6)2016 May 31.
Article in English | MEDLINE | ID: mdl-27258238

ABSTRACT

An organocatalyzed intramolecular carbonyl-ene reaction was developed to produce carbocyclic and heterocyclic 5- and 6-membered rings from a citronellal-derived trifluoroketone and a variety of aldehydes. A phosphoramide derivative was found to promote the cyclization of the trifluoroketone, whereas a less acidic phosphoric acid proved to be a superior catalyst for the aldehyde substrates.


Subject(s)
Aldehydes/chemistry , Catalysis , Ketones/chemistry , Phosphoramides/chemistry , Acyclic Monoterpenes , Cyclization , Molecular Structure , Monoterpenes/chemistry , Stereoisomerism
13.
J Gene Med ; 18(1-3): 3-15, 2016.
Article in English | MEDLINE | ID: mdl-26519353

ABSTRACT

BACKGROUND: To optimize synthetic gene delivery systems, there is a need to develop more efficient lipid formulations. Most cationic lipid formulations contain 'helper' neutral lipids because of their ability to increase DNA delivery, in particular by improving endosomal escape of DNA molecules via the pH-buffering effect of protonatable groups and/or fusion with the lipid bilayer of endosomes. METHODS: We evaluated the influence of the linker structure between the two oleyl chains in the helper lipid on transfection efficiency in cell lines, as well as in primary cells (hepatocytes/cardiomyocytes). We reported the synthesis of two new pH-buffering imidazole helper lipids characterized by a polar headgroup containing one (compound 6) or two (compound 5) imidazole groups and two oleyl chains linked by an amide group. We studied their association with the aminoglycoside lipidic derivative dioleylsuccinylparomomycin (DOSP), which contains two oleyl chains linked to the aminoglycoside polar headgroup via an amide function. We compared the morphology and transfection properties of such binary liposomes of DOSP/5 and DOSP/6 with those of liposomes combining DOSP with another imidazole-based dioleyl helper lipid (MM27) in which a phosphoramido group acts as a linker between the two oleyl chains and imidazole function. RESULTS: The phosphoramido linker in the helper lipid induces a major difference in terms of morphology and resistance to decomplexation at physical pH for DOSP/helper lipid complexes. CONCLUSIONS: This hybrid dioleyl linker composition of DOSP/MM27 led to higher transfection efficiency in cell lines and in primary cells compared to complexes with homogeneous dioleyl linker.


Subject(s)
Imidazoles/chemistry , Lipids/chemistry , Liposomes/chemistry , Phosphoramides/chemistry , Transfection/methods , Animals , Cations/chemistry , DNA/chemistry , Endosomes/metabolism , HEK293 Cells , Hepatocytes , Humans , Imidazoles/chemical synthesis , Lipids/chemical synthesis , Mice , Microscopy, Electron, Transmission , Myoblasts , Primary Cell Culture , Rats
14.
Ying Yong Sheng Tai Xue Bao ; 27(12): 4003-4012, 2016 Dec.
Article in Chinese | MEDLINE | ID: mdl-29704361

ABSTRACT

Addition of urease inhibitors is one of the important measures to increase nitrogen (N) use efficiency of crop, due to retardant of urea hydrolysis and reduction of ammonia volatilization loss. An incubation experiment was conducted to investigate the urease inhibition effect of a new phosphoramide urease inhibitor, NPPT (N-(n-propyl) thiophosphoric triamide) in different texture soils under dark condition at 25 ℃, and NBPT (N-(n-butyl) thiophosphoric triamide) was obtained to compare the inhibition effect on urease in different soil textures by different dosages of urea adding. Results showed that the effective reaction time of urea was less than 9 d in the loamy and clay soil. Addition of inhibitors for retardation of urea hydrolysis was more than 3 d. In sandy soil, urea decomposition was relatively slow, and adding inhibitor significantly inhibited soil urease acti-vity, and reduced NH4+-N content. During the incubation time, the inhibition effect of high dosage urea in the soil was better than that of low dosage. At day 6, the urease inhibition rate of NBPT and NPPT (N 250 mg·kg-1) were 56.3% and 53.0% in sandy soil, 0.04% and 0.3% in loamy soil, 4.1% and 6.2% in clay soil; the urease inhibition rate of NBPT and NPPT (N 500 mg·kg-1) were 59.4% and 65.8% in sandy soil, 14.5% and 15.1% in loamy soil, 49.1% and 48.1% in clay soil. The urease inhibition effects in different texture soil were in order of sandy soil > clay soil> loamy soil. The soil NH4+-N content by different inhibitors during incubation time increased at first and then decreased, while soil NO3--N content and apparent nitrification rate both showed rising trends. Compared with urea treatment, addition of urease inhibitors (NBPT and NPPT) significantly increased urea-N left in the soil and reduced NH4+-N content. In short, new urease inhibitor NPPT in different texture is an effective urease inhibitor.


Subject(s)
Phosphoramides/chemistry , Soil/chemistry , Urea/chemistry , Urease/antagonists & inhibitors , Aluminum Silicates , Ammonia , Clay , Nitrification , Nitrogen , Organophosphorus Compounds/chemistry , Volatilization
15.
Carbohydr Res ; 418: 9-12, 2015 Dec 11.
Article in English | MEDLINE | ID: mdl-26513759

ABSTRACT

Campylobacter jejuni is a leading cause of traveler's diarrhea. Previously, we have shown that a C. jejuni capsule polysaccharide (CPS) conjugate vaccine can fully prevent C.jejuni diarrhea in non-human primates. C.jejuni CPSs are decorated with non-stoichiometric amounts of O-methyl phosphoramidate (MeOPN) units that are key serospecific markers. In the case of C.jejuni serotype complex HS23/36, the MeOPN are at positions 2 and 6 of the CPS galactose (Gal). We describe here the synthesis of the p-methoxyphenyl glycoside of MeOPN→6-α-D-Galp, and its immunodetection by antisera raised by C.jejuni CPS conjugates with MeOPN at primary positions. The synthetic approach in this work served as the foundation for a similar MeOPN→6-Gal construct used in a conjugate vaccine, whose synthesis, immunogenicity and efficacy will be described elsewhere.


Subject(s)
Campylobacter jejuni/immunology , Galactosides/immunology , Phosphoramides/immunology , Polysaccharides, Bacterial/immunology , Vaccines, Conjugate/immunology , Campylobacter jejuni/chemistry , Carbohydrate Conformation , Galactosides/chemical synthesis , Galactosides/chemistry , Phosphoramides/chemical synthesis , Phosphoramides/chemistry , Polysaccharides, Bacterial/chemical synthesis , Polysaccharides, Bacterial/chemistry , Vaccines, Conjugate/chemistry
16.
Molecules ; 20(9): 16103-26, 2015 Sep 03.
Article in English | MEDLINE | ID: mdl-26404222

ABSTRACT

Over the last several years there has been a huge increase in the development and applications of new efficient organocatalysts for enantioselective pericyclic reactions, which represent one of the most powerful types of organic transformations. Among these processes are cycloaddition reactions (e.g., [3+2]; formal [3+3]; [4+2]; vinylogous [4+2] and 1,3-dipolar cycloadditions), which belong to the most utilized reactions in organic synthesis of complex nitrogen- and oxygen-containing heterocyclic molecules. This review presents the breakthrough realized in this field using chiral BINOL-derived phosphoric acids and N-triflyl phosphoramide organocatalysts.


Subject(s)
Phosphoramides/chemistry , Phosphoric Acids/chemistry , Catalysis , Cyclization , Molecular Structure
17.
Chemistry ; 21(33): 11634-11643, 2015 Aug 10.
Article in English | MEDLINE | ID: mdl-26237536

ABSTRACT

Although numerous reports on the synthesis of atom-specific (15)N-labeled nucleosides exist, fast and facile access to the corresponding phosphoramidites for RNA solid-phase synthesis is still lacking. This situation represents a severe bottleneck for NMR spectroscopic investigations on functional RNAs. Here, we present optimized procedures to speed up the synthesis of (15)N(1) adenosine and (15)N(1) guanosine amidites, which are the much needed counterparts of the more straightforward-to-achieve (15)N(3) uridine and (15)N(3) cytidine amidites in order to tap full potential of (1)H/(15)N/(15)N-COSY experiments for directly monitoring individual Watson-Crick base pairs in RNA. Demonstrated for two preQ1 riboswitch systems, we exemplify a versatile concept for individual base-pair labeling in the analysis of conformationally flexible RNAs when competing structures and conformational dynamics are encountered.


Subject(s)
Adenosine/chemical synthesis , Cytidine/chemistry , Guanosine/chemical synthesis , Nucleosides/chemistry , Phosphoramides/chemistry , Phosphoramides/chemical synthesis , RNA/chemistry , Uridine/chemistry , Adenosine/chemistry , Base Pairing , Guanosine/chemistry , Magnetic Resonance Spectroscopy , Nucleic Acid Conformation , Solid-Phase Synthesis Techniques
18.
Chem Commun (Camb) ; 51(59): 11844-7, 2015 Jul 28.
Article in English | MEDLINE | ID: mdl-26108155

ABSTRACT

The chiral phosphoramide-catalyzed asymmetric reaction of indol-2-yl carbinols with enamides is presented. The method provided an efficient and novel way for the synthesis of chiral 2-indole-substituted 1,1-diarylalkane derivatives.


Subject(s)
Alkanes/chemical synthesis , Amides/chemistry , Indoles/chemistry , Phosphoramides/chemistry , Alkanes/chemistry , Catalysis , Molecular Structure
19.
Article in English | MEDLINE | ID: mdl-25827370

ABSTRACT

In this study, the synthesis and spectroscopic characterization of new phosphoramides based on 3-amino-5-methylisoxazole with the formula R2P(O)[NH-C4H4NO], R = C6H5O (1), C6H5 (2), RP(O)[NH-C4H4NO]2, R = C6H5O (3), CH3-C6H4O (4), C6H5NH (5), (C6H5)ClP(O)[NH-C4H4NO] (6) and two lanthanide complexes [Ln(2)2(NO3)3(EtOH)]·EtOH, Ln(III) = Ce (7) and Eu (8), have been reported. The structural study of (3) shows the presence of two conformers (crystallographically independent molecules) in the crystalline lattice, caused by different orientations of the phenyl and isoxazole rings. For (3), the intermolecular interactions have been studied by Hirshfeld surface analysis and fingerprint plots. Furthermore, the electronic and energy aspects of hydrogen bonds between molecules of (3) have been explored by density functional theory (DFT) calculations. X-ray crystallography of complexes (7) and (8) reveals that two phosphoramide ligands take part in coordination to the metal, one as monodentate from O(phosphoryl), and the other one as chelate through O(phosphoryl) and N(ring). The complexes are also composed of two conformers in the solid-state structure. Quantum theory of atoms in molecules (QTAIM) analysis discloses the electrostatic nature of the Ln-ligand interaction.


Subject(s)
Cerium/chemistry , Coordination Complexes/chemistry , Europium/chemistry , Isoxazoles/chemistry , Phosphoramides/chemistry , Coordination Complexes/chemical synthesis , Crystallography, X-Ray , Hydrogen Bonding , Isoxazoles/chemical synthesis , Ligands , Models, Molecular , Phosphoramides/chemical synthesis , Quantum Theory , Spectrum Analysis
20.
J Org Chem ; 80(3): 1402-13, 2015 Feb 06.
Article in English | MEDLINE | ID: mdl-25569800

ABSTRACT

Conjugate addition of α-nitrophosphonates to enones was carried out in the presence of two sets of organocatalysts, viz. a quinine-thiourea and a quinine-squaramide. The quinine-thiourea provided the products possessing an α-quaternary chiral center in high enantioselectivities only in the case of electron rich enones. On the other hand, the quinine-squaramide was more efficient in that a wide variety of electron rich and electron poor enones underwent Michael addition of nitrophosphonates to afford the quaternary α-nitrophosphonates in excellent yields and enantioselectivities. The hydrogen bonding donor ability of the bifunctional catalyst, as shown in the proposed transition states, appears primarily responsible for the observed selectivity. However, a favorable π-stacking between the aryl groups of thiourea/squaramide and aryl vinyl ketone also appeared favorable. The reaction was amenable to scale up, and the enantioenriched quaternary α-nitrophosphonates could be easily transformed to synthetically and biologically useful quaternary α-aminophosphonates and other multifunctional molecules.


Subject(s)
Amides/chemistry , Ketones/chemistry , Phosphoramides/chemistry , Phosphoramides/chemical synthesis , Quinine/chemistry , Thiourea/chemistry , Biological Phenomena , Catalysis , Molecular Structure , Stereoisomerism
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