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1.
Elife ; 122024 May 16.
Article in English | MEDLINE | ID: mdl-38753426

ABSTRACT

Zoonotic disease dynamics in wildlife hosts are rarely quantified at macroecological scales due to the lack of systematic surveys. Non-human primates (NHPs) host Plasmodium knowlesi, a zoonotic malaria of public health concern and the main barrier to malaria elimination in Southeast Asia. Understanding of regional P. knowlesi infection dynamics in wildlife is limited. Here, we systematically assemble reports of NHP P. knowlesi and investigate geographic determinants of prevalence in reservoir species. Meta-analysis of 6322 NHPs from 148 sites reveals that prevalence is heterogeneous across Southeast Asia, with low overall prevalence and high estimates for Malaysian Borneo. We find that regions exhibiting higher prevalence in NHPs overlap with human infection hotspots. In wildlife and humans, parasite transmission is linked to land conversion and fragmentation. By assembling remote sensing data and fitting statistical models to prevalence at multiple spatial scales, we identify novel relationships between P. knowlesi in NHPs and forest fragmentation. This suggests that higher prevalence may be contingent on habitat complexity, which would begin to explain observed geographic variation in parasite burden. These findings address critical gaps in understanding regional P. knowlesi epidemiology and indicate that prevalence in simian reservoirs may be a key spatial driver of human spillover risk.


Zoonotic diseases are infectious diseases that are transmitted from animals to humans. For example, the malaria-causing parasite Plasmodium knowlesi can be transmitted from monkeys to humans through mosquitos that have previously fed on infected monkeys. In Malaysia, progress towards eliminating malaria is being undermined by the rise of human incidences of 'monkey malaria', which has been declared a public health threat by The World Health Organisation. In humans, cases of monkey malaria are higher in areas of recent deforestation. Changes in habitat may affect how monkeys, insects and humans interact, making it easier for diseases like malaria to pass between them. Deforestation could also change the behaviour of wildlife, which could lead to an increase in infection rates. For example, reduced living space increases contact between monkeys, or it may prevent behaviours that help animals to avoid parasites. Johnson et al. wanted to investigate how the prevalence of malaria in monkeys varies across Southeast Asia to see whether an increase of Plasmodium knowlesi in primates is linked to changes in the landscape. They merged the results of 23 existing studies, including data from 148 sites and 6322 monkeys to see how environmental factors like deforestation influenced the amount of disease in different places. Many previous studies have assumed that disease prevalence is high across all macaques, monkey species that are considered pests, and in all places. But Johnson et al. found that disease rates vary widely across different regions. Overall disease rates in monkeys are lower than expected (only 12%), but in regions with less forest or more 'fragmented' forest areas, malaria rates are higher. Areas with a high disease rate in monkeys tend to further coincide with infection hotspots for humans. This suggests that deforestation may be driving malaria infection in monkeys, which could be part of the reason for increased human infection rates. Johnsons et al.'s study has provided an important step towards better understanding the link between deforestation and the levels of monkey malaria in humans living nearby. Their study provides important insights into how we might find ways of managing the landscape better to reduce health risks from wildlife infection.


Subject(s)
Malaria , Plasmodium knowlesi , Primates , Zoonoses , Animals , Humans , Asia, Southeastern/epidemiology , Ecosystem , Malaria/epidemiology , Malaria/transmission , Malaria/parasitology , Prevalence , Primate Diseases/epidemiology , Primate Diseases/parasitology , Primate Diseases/transmission , Primates/parasitology , Zoonoses/epidemiology , Zoonoses/parasitology , Zoonoses/transmission
2.
Viruses ; 13(12)2021 11 30.
Article in English | MEDLINE | ID: mdl-34960663

ABSTRACT

Marburg virus (MARV), the causative agent of Marburg virus disease, emerges sporadically in sub-Saharan Africa and is often fatal in humas. The natural reservoir for this zoonotic virus is the frugivorous Egyptian rousette bat (Rousettus aegyptiacus) that when infected, sheds virus in the highest amounts in oral secretions and urine. Being fruit bats, these animals forage nightly for ripened fruit throughout the year, including those types often preferred by humans. During feeding, they continually discard partially eaten fruit on the ground that could then be consumed by other Marburg virus susceptible animals or humans. In this study, using qRT-PCR and virus isolation, we tested fruit discarded by Egyptian rousette bats experimentally infected with a natural bat isolate of Marburg virus. We then separately tested viral persistence on fruit varieties commonly cultivated in sub-Saharan Africa using a recombinant Marburg virus expressing the fluorescent ZsGreen1. Marburg virus RNA was repeatedly detected on fruit in the food bowls of the infected bats and viable MARV was recovered from inoculated fruit for up to 6 h.


Subject(s)
Chiroptera/virology , Fruit/virology , Marburgvirus/isolation & purification , Primate Diseases/virology , Viral Zoonoses/virology , Africa South of the Sahara , Animals , Chiroptera/physiology , Chiroptera/urine , Disease Reservoirs/virology , Humans , Marburgvirus/classification , Marburgvirus/genetics , Primate Diseases/transmission , Primates , Viral Zoonoses/transmission
3.
PLoS One ; 16(9): e0256552, 2021.
Article in English | MEDLINE | ID: mdl-34496001

ABSTRACT

Our research goal was to investigate the primate pet trade in the United States. While dogs and cats are the most common type of pet, there are an estimated 15,000 pet primates in the United States and the demand for exotic pets in general has been rising. Most research on pet primates occurs in habitat countries and little is known about these pets in the United States. We collected data from six exotic pet-trade websites twice a month for 12 months. We recorded the type of primate for sale, sex, age, location, and price. We used Chi-Square Goodness-of-Fit tests to compare whether the number of male and female pet primates for sale and the number of different age categories of pet primates for sale differed from equality and Spearman Correlation to examine associations between price and size and price and supply. We recorded 551 pet primates for sale between June 2019-June 2020, with 69.1% platyrrhines, 21.6% strepsirrhines, and 8.9% catarrhines. Marmosets were sold most often (36.7%, N = 202) followed by lemurs (21.6%, N = 119), capuchins (11.3%, N = 62), and squirrel monkeys (10.5%, N = 58). Almost two-thirds of the pet primates for sale were male (Chi-Square = 16.056, df = 1, P = 0. 00006) and 78.7% were under one year old (Chi-Square = 440.264, df = 2, P<0.00001). The median price was $3,800 though price was highly variable, even for the same taxa. There are several potential drivers for the primate pet trade, including media influence, fashion/status, and profitable breeding though these are not mutually exclusive. Primates do not make good pets and even when captive-bred, pet primates impact the conservation of their wild counterparts. Advertisement campaigns focusing on disease transmission and legal consequences and a federal ban on pet primate ownership are two avenues to pursue to end the ownership of pet primates in the United States.


Subject(s)
Animals, Exotic , Commerce , Pets , Primate Diseases/transmission , Primates , Animals , Conservation of Natural Resources , Female , Male , Ownership/legislation & jurisprudence , Pets/economics , United States
4.
Crit Rev Microbiol ; 47(3): 307-322, 2021 May.
Article in English | MEDLINE | ID: mdl-33570448

ABSTRACT

The ongoing COVID-19 pandemic has made us wonder what led to its occurrence and what can be done to avoid such events in the future. As we document, one changing circumstance that is resulting in the emergence and changing the expression of viral diseases in both plants and animals is climate change. Of note, the rapidly changing environment and weather conditions such as excessive flooding, droughts, and forest fires have raised concerns about the global ecosystem's security, sustainability, and balance. In this review, we discuss the main consequences of climate change and link these to how they impact the appearance of new viral pathogens, how they may facilitate transmission between usual and novel hosts, and how they may also affect the host's ability to manage the infection. We emphasize how changes in temperature and humidity and other events associated with climate change influence the reservoirs of viral infections, their transmission by insects and other intermediates, their survival outside the host as well the success of infection in plants and animals. We conclude that climate change has mainly detrimental consequences for the emergence, transmission, and outcome of viral infections and plead the case for halting and hopefully reversing this dangerous event.


Subject(s)
COVID-19/transmission , Climate Change , Communicable Diseases, Emerging/transmission , Plant Diseases/virology , Virus Diseases/transmission , Animals , Aquatic Organisms/virology , COVID-19/complications , COVID-19/etiology , COVID-19/immunology , Chiroptera/virology , Communicable Diseases, Emerging/complications , Communicable Diseases, Emerging/etiology , Communicable Diseases, Emerging/immunology , Crops, Agricultural/virology , Disease Reservoirs/virology , Disease Vectors/classification , Food Supply , Humans , Humidity , Plant Diseases/immunology , Primate Diseases/transmission , Primate Diseases/virology , Primates , Rain , Seasons , Temperature , Virus Diseases/complications , Virus Diseases/etiology , Virus Diseases/immunology
5.
PLoS Negl Trop Dis ; 15(2): e0008736, 2021 02.
Article in English | MEDLINE | ID: mdl-33591994

ABSTRACT

Transmission foci of autochthonous malaria caused by Plasmodium vivax-like parasites have frequently been reported in the Atlantic Forest in Southeastern and Southern Brazil. Evidence suggests that malaria is a zoonosis in these areas as human infections by simian Plasmodium species have been detected, and the main vector of malaria in the Atlantic Forest, Anopheles (Kerteszia) cruzii, can blood feed on human and simian hosts. In view of the lack of models that seek to predict the dynamics of zoonotic transmission in this part of the Atlantic Forest, the present study proposes a new deterministic mathematical model that includes a transmission compartment for non-human primates and parameters that take into account vector displacement between the upper and lower forest strata. The effects of variations in the abundance and acrodendrophily of An. cruzii on the prevalence of infected humans in the study area and the basic reproduction number (R0) for malaria were analyzed. The model parameters are based on the literature and fitting of the empirical data. Simulations performed with the model indicate that (1) an increase in the abundance of the vector in relation to the total number of blood-seeking mosquitoes leads to an asymptotic increase in both the proportion of infected individuals at steady state and R0; (2) the proportion of infected humans at steady state is higher when displacement of the vector mosquito between the forest strata increases; and (3) in most scenarios, Plasmodium transmission cannot be sustained only between mosquitoes and humans, which implies that non-human primates play an important role in maintaining the transmission cycle. The proposed model contributes to a better understanding of the dynamics of malaria transmission in the Atlantic Forest.


Subject(s)
Anopheles , Malaria/transmission , Mosquito Vectors , Animals , Brazil , Ecosystem , Forests , Humans , Models, Theoretical , Plasmodium , Primate Diseases/transmission , Primates
6.
PLoS Pathog ; 16(8): e1008699, 2020 08.
Article in English | MEDLINE | ID: mdl-32764827

ABSTRACT

São Paulo, a densely inhabited state in southeast Brazil that contains the fourth most populated city in the world, recently experienced its largest yellow fever virus (YFV) outbreak in decades. YFV does not normally circulate extensively in São Paulo, so most people were unvaccinated when the outbreak began. Surveillance in non-human primates (NHPs) is important for determining the magnitude and geographic extent of an epizootic, thereby helping to evaluate the risk of YFV spillover to humans. Data from infected NHPs can give more accurate insights into YFV spread than when using data from human cases alone. To contextualise human cases, identify epizootic foci and uncover the rate and direction of YFV spread in São Paulo, we generated and analysed virus genomic data and epizootic case data from NHPs in São Paulo. We report the occurrence of three spatiotemporally distinct phases of the outbreak in São Paulo prior to February 2018. We generated 51 new virus genomes from YFV positive cases identified in 23 different municipalities in São Paulo, mostly sampled from NHPs between October 2016 and January 2018. Although we observe substantial heterogeneity in lineage dispersal velocities between phylogenetic branches, continuous phylogeographic analyses of generated YFV genomes suggest that YFV lineages spread in São Paulo at a mean rate of approximately 1km per day during all phases of the outbreak. Viral lineages from the first epizootic phase in northern São Paulo subsequently dispersed towards the south of the state to cause the second and third epizootic phases there. This alters our understanding of how YFV was introduced into the densely populated south of São Paulo state. Our results shed light on the sylvatic transmission of YFV in highly fragmented forested regions in São Paulo state and highlight the importance of continued surveillance of zoonotic pathogens in sentinel species.


Subject(s)
Genome, Viral , Primate Diseases/virology , Yellow Fever/veterinary , Yellow Fever/virology , Yellow fever virus/genetics , Zoonoses/virology , Animals , Brazil/epidemiology , Disease Outbreaks , Genomics , Humans , Phylogeny , Phylogeography , Primate Diseases/epidemiology , Primate Diseases/transmission , Primates/virology , Yellow Fever/epidemiology , Yellow Fever/transmission , Yellow fever virus/classification , Yellow fever virus/isolation & purification , Zoonoses/epidemiology , Zoonoses/transmission
7.
Am J Primatol ; 82(8): e23176, 2020 08.
Article in English | MEDLINE | ID: mdl-32686188

ABSTRACT

The emergence of SARS-CoV-2 in late 2019 and human responses to the resulting COVID-19 pandemic in early 2020 have rapidly changed many aspects of human behavior, including our interactions with wildlife. In this commentary, we identify challenges and opportunities at human-primate interfaces in light of COVID-19, focusing on examples from Asia, and make recommendations for researchers working with wild primates to reduce zoonosis risk and leverage research opportunities. First, we briefly review the evidence for zoonotic origins of SARS-CoV-2 and discuss risks of zoonosis at the human-primate interface. We then identify challenges that the pandemic has caused for primates, including reduced nutrition, increased intraspecific competition, and increased poaching risk, as well as challenges facing primatologists, including lost research opportunities. Subsequently, we highlight opportunities arising from pandemic-related lockdowns and public health messaging, including opportunities to reduce the intensity of problematic human-primate interfaces, opportunities to reduce the risk of zoonosis between humans and primates, opportunities to reduce legal and illegal trade in primates, new opportunities for research on human-primate interfaces, and opportunities for community education. Finally, we recommend specific actions that primatologists should take to reduce contact and aggression between humans and primates, to reduce demand for primates as pets, to reduce risks of zoonosis in the context of field research, and to improve understanding of human-primate interfaces. Reducing the risk of zoonosis and promoting the well-being of humans and primates at our interfaces will require substantial changes from "business as usual." We encourage primatologists to help lead the way.


Subject(s)
Coronavirus Infections/prevention & control , Pandemics/prevention & control , Pneumonia, Viral/prevention & control , Primate Diseases/prevention & control , Zoonoses/prevention & control , Animals , COVID-19 , Conservation of Natural Resources/trends , Coronavirus Infections/transmission , Feeding Behavior/physiology , Humans , Pneumonia, Viral/transmission , Primate Diseases/transmission , Primate Diseases/virology , Primates , Risk Factors , Zoonoses/transmission
8.
Primates ; 61(6): 775-784, 2020 Nov.
Article in English | MEDLINE | ID: mdl-32562165

ABSTRACT

Infectious diseases constitute one of the major threats to African great apes. Bonobos (Pan paniscus) may be particularly vulnerable to the transmission of infectious diseases because of their cohesive grouping and frequent social and sexual interactions between groups. Here we report two cases of a flu-like illness and possible transmission of the illness among neighboring wild bonobo groups at Wamba, DR Congo. The first flu-like outbreak started in the PE group on July 28, 2013, 2 days after they had encounters with the BI and PW groups. All PE members, except for one infant, subsequently developed flu-like symptoms, including coughing and running nose. The second flu-like outbreak occurred in the E1 group on October 14, 2013, after E1 had encountered the PE group and the two groups stayed together from October 7 to 11. Eleven out of the 15 observed party members developed symptoms over the next 4 days. The pathogens underlying the two outbreaks may have been related as two temporary immigrant females, who had previously shown symptoms while in the PE group, stayed briefly in the E1 group during the second outbreak, but did not show any symptoms.


Subject(s)
Pan paniscus , Primate Diseases/transmission , Social Behavior , Animals , Behavior, Animal , Cough/veterinary , Democratic Republic of the Congo , Disease Outbreaks/veterinary , Female , Male , Primate Diseases/epidemiology , Rhinorrhea/veterinary
9.
Am J Primatol ; 82(8): e23158, 2020 08.
Article in English | MEDLINE | ID: mdl-32495390

ABSTRACT

The coronavirus disease 2019 pandemic has radically changed the human activities worldwide. Although we are still learning about the disease, it is necessary that primatologists, veterinarians, and all that are living with nonhuman primates (NHP) be concerned about the probable health impacts as these animals face this new pandemic. We want to increase discussion with the scientific community that is directly involved with these animals, because preliminary studies report that NHP may become infected and develop symptoms similar to those in human beings.


Subject(s)
Coronavirus Infections/veterinary , Pandemics/veterinary , Pneumonia, Viral/veterinary , Primate Diseases/virology , Primates/virology , Animals , Animals, Zoo , COVID-19 , Coronavirus Infections/epidemiology , Coronavirus Infections/etiology , Coronavirus Infections/transmission , Coronavirus Infections/virology , Disease Models, Animal , Humans , Macaca fascicularis , Macaca mulatta , Nasal Mucosa/virology , Pneumonia, Viral/etiology , Pneumonia, Viral/transmission , Pneumonia, Viral/virology , Primate Diseases/blood , Primate Diseases/etiology , Primate Diseases/transmission , Severe Acute Respiratory Syndrome/epidemiology , Viral Load/veterinary , Weight Loss
10.
Parasit Vectors ; 13(1): 90, 2020 Feb 19.
Article in English | MEDLINE | ID: mdl-32075684

ABSTRACT

BACKGROUND: Yellow fever (YF) is a severe, infectious, but non-communicable arboviral hemorrhagic disease. In the last decades, yellow fever virus (YFV) infections have been prevalent in endemic areas in Brazil, affecting human and non-human primate (NHP) populations. Monitoring of NHP infection started in 1999, and reports of epizootic diseases are considered important indicators of viral transmission, particularly in relation to the sylvatic cycle. This study presents the monitoring of YFV by real-time RT-PCR and the epidemiological findings related to the deaths of NHPs in the south-eastern states and in the north-eastern state of Bahia, during the outbreak of YF in Brazil during 2017 and 2018. METHODS: A total of 4198 samples from 2099 NHPs from south-eastern and north-eastern Brazilian states were analyzed by real-time reverse transcription polymerase chain reaction (rtRT-PCR). RESULTS: A total of 4198 samples from 2099 NHPs from south-eastern and north-eastern Brazilian states were collected between 2017 and 2018. The samples were subjected to molecular diagnostics for YFV detection using real-time reverse transcription polymerase chain reaction (rtRT-PCR) techniques. Epizootics were coincident with human YF cases. Furthermore, our results showed that the YF frequency was higher among marmosets (Callithrix sp.) than in previous reports. Viremia in species of the genus Alouatta and Callithrix differed greatly. DISCUSSION: Our results indicate a need for further investigation of the role of Callithrix spp. in the transmission cycles of YFV in Brazil. In particular, YFV transmission was observed in a region where viral circulation has not been recorded for decades and thus vaccination has not been previously recommended. CONCLUSIONS: This highlights the need to straighten epizootic surveillance and evaluate the extent of vaccination programmes in Brazil in previously considered "YFV-free" areas of the country.


Subject(s)
Primate Diseases/epidemiology , Yellow Fever/veterinary , Alouatta/virology , Animals , Brazil/epidemiology , Callithrix/virology , Disease Outbreaks , Humans , Primate Diseases/transmission , Primate Diseases/virology , Yellow Fever/epidemiology , Yellow Fever/virology , Zoonoses/epidemiology , Zoonoses/virology
11.
Malar J ; 18(1): 66, 2019 Mar 08.
Article in English | MEDLINE | ID: mdl-30849978

ABSTRACT

Plasmodium knowlesi is a zoonotic malaria parasite normally residing in long-tailed and pig-tailed macaques (Macaca fascicularis and Macaca nemestrina, respectively) found throughout Southeast Asia. Recently, knowlesi malaria has become the predominant malaria affecting humans in Malaysian Borneo, being responsible for approximately 70% of reported cases. Largely as a result of anthropogenic land use changes in Borneo, vectors which transmit the parasite, along with macaque hosts, are both now frequently found in disturbed forest habitats, or at the forest fringes, thus having more frequent contact with humans. Having access to human hosts provides the parasite with the opportunity to further its adaption to the human immune system. The ecological drivers of the transmission and spread of P. knowlesi are operating over many different spatial (and, therefore, temporal) scales, from the molecular to the continental. Strategies to prevent and manage zoonoses, such as P. knowlesi malaria require interdisciplinary research exploring the impact of land use change and biodiversity loss on the evolving relationship between parasite, reservoir hosts, vectors, and humans over multiple spatial scales.


Subject(s)
Disease Transmission, Infectious , Malaria/transmission , Malaria/veterinary , Plasmodium knowlesi/isolation & purification , Primate Diseases/transmission , Zoonoses/transmission , Animals , Borneo/epidemiology , Ecosystem , Humans , Macaca fascicularis , Macaca nemestrina , Malaria/epidemiology , Malaria/parasitology , Primate Diseases/parasitology , Zoonoses/epidemiology , Zoonoses/parasitology
12.
Arch Virol ; 164(2): 573-578, 2019 Feb.
Article in English | MEDLINE | ID: mdl-30343383

ABSTRACT

Human parvovirus 4 (PARV4, family Parvoviridae, genus Tetraparvovirus) displays puzzling features, such as uncertain clinical importance/significance, unclear routes of transmission, and discontinuous geographical distribution. The origin, or the general reservoir, of human PARV4 infection is unknown. We aimed to detect and characterize PARV4 virus in faecal samples collected from two wild chimpanzee populations and 19 species of captive non-human primates. We aimed to investigate these species as a potential reservoir and alternate route of transmission on the African continent. From almost 500 samples screened, a single wild Pan troglodytes schweinfurthii sample tested positive. Full genome analysis, as well as single ORF phylogenies, confirmed species-specific PARV4 infection.


Subject(s)
Feces/virology , Parvoviridae Infections/veterinary , Parvovirinae/isolation & purification , Primate Diseases/virology , Animals , Animals, Wild/virology , Female , Genome, Viral , Male , Open Reading Frames , Pan troglodytes , Parvoviridae Infections/transmission , Parvoviridae Infections/virology , Parvovirinae/classification , Parvovirinae/genetics , Phylogeny , Primate Diseases/transmission
13.
PLoS Negl Trop Dis ; 12(12): e0006976, 2018 12.
Article in English | MEDLINE | ID: mdl-30589843

ABSTRACT

Emerging infectious diseases of zoonotic origin constitute a recurrent threat to global health. Nonhuman primates (NHPs) occupy an important place in zoonotic spillovers (pathogenic transmissions from animals to humans), serving as reservoirs or amplifiers of multiple neglected tropical diseases, including viral hemorrhagic fevers and arboviruses, parasites and bacteria, as well as retroviruses (simian foamy virus, PTLV) that are pathogenic in human beings. Hunting and butchering studies in Africa characterize at-risk human social groups, but overlook critical factors of contact heterogeneity and frequency, NHP species differences, and meat processing practices. In southeastern Cameroon, a region with a history of zoonotic emergence and high risk of future spillovers, we conducted a novel mixed-method field study of human physical exposure to multiple NHP species, incorporating participant-based and ecological methodologies, and qualitative interviews (n = 25). We find frequent physical contact across adult human populations, greater physical contact with monkeys than apes, especially for meat handling practices, and positive correlation of human exposure with NHP species abundance and proximity to human settlement. These fine-grained results encourage reconsideration of the likely dynamics of human-NHP contact in past and future NTD emergence events. Multidisciplinary social science and ecological approaches should be mobilized to generate more effective human and animal surveillance and risk communications around neglected tropical diseases. At a moment when the WHO has included "Disease X", a presumably zoonotic pathogen with pandemic potential, on its list of blueprint priority diseases as, new field-based tools for investigating zoonotic disease emergence, both known and unknown, are of critical importance.


Subject(s)
Bodily Secretions/metabolism , Communicable Diseases, Emerging/transmission , Meat/analysis , Primate Diseases/metabolism , Zoonoses/transmission , Adult , Aged , Aged, 80 and over , Animals , Bodily Secretions/chemistry , Cameroon/epidemiology , Communicable Diseases, Emerging/epidemiology , Contact Tracing , Environmental Exposure , Female , Food Contamination/analysis , Haplorhini , Hominidae , Humans , Male , Middle Aged , Primate Diseases/transmission , Young Adult , Zoonoses/epidemiology
14.
Emerg Microbes Infect ; 7(1): 79, 2018 May 09.
Article in English | MEDLINE | ID: mdl-29739925

ABSTRACT

Based on serological evidence and viral isolation, Zika virus (ZIKV) has circulated for many years relatively benignly in a sylvatic cycle in Africa and an urban cycle in South East Asia (SEA). With the recent availability of limited but novel Indian ZIKV sequences to add to the plethora of SEA sequences, we traced the phylogenetic history and spatio-temporal dispersal pattern of ZIKV in Asia prior to its explosive emergence in the Pacific region and the Americas. These analyses demonstrated that the introduction and dispersal of ZIKV on the Pacific islands were preceded by an extended period of relatively silent transmission in SEA, enabling the virus to expand geographically and evolve adaptively before its unanticipated introduction to immunologically naive populations on the Pacific islands and in the Americas. Our findings reveal new features of the evolution and dispersal of this intriguing virus and may benefit future disease control strategies.


Subject(s)
Evolution, Molecular , Primate Diseases/virology , Zika Virus Infection/veterinary , Zika Virus Infection/virology , Zika Virus/genetics , Aedes/physiology , Aedes/virology , Amino Acid Substitution , Animals , Asia/epidemiology , Humans , Macaca mulatta/virology , Mosquito Vectors/physiology , Mosquito Vectors/virology , Phylogeny , Primate Diseases/transmission , Zika Virus/classification , Zika Virus/isolation & purification , Zika Virus/physiology , Zika Virus Infection/epidemiology , Zika Virus Infection/transmission
16.
Infect Genet Evol ; 49: 21-31, 2017 04.
Article in English | MEDLINE | ID: mdl-28039076

ABSTRACT

We report here whole genome analysis of a porcine rotavirus-A (RVA) strain RVA/Pig-wt/KNA/ET8B/2015/G5P[13] detected in a diarrheic piglet, and nearly whole genome (except for VP4 gene) analysis of a simian RVA strain RVA/Simian-wt/KNA/08979/2015/G5P[X] detected in a non-diarrheic African green monkey (AGM) on the island of St. Kitts, Caribbean region. Strain ET8B exhibited a G5-P[13]-I5-R1-C1-M1-A8-N1-T7-E1-H1 genotype constellation that was identical to those of Brazilian porcine RVA G5P[13] strains RVA/Pig-wt/BRA/ROTA01/2013/G5P[13] and RVA/Pig-wt/BRA/ROTA07/2013/G5P[13], the only porcine G5P[13] RVAs that have been analyzed for the whole genome so far. Phylogenetically, all the 11 gene segments of ET8B were closely related to those of porcine and porcine-like human RVAs within the respective genotypes. Although the porcine G5P[13] RVAs exhibited identical genotype constellations, ET8B did not appear to share common evolutionary pathways with the Brazilian porcine G5P[13] RVAs. Interestingly, the VP2, VP3, VP6, VP7, and NSP1-NSP5 genes of simian RVA strain 08979 were closely related to those of porcine and porcine-like human RVA strains, exhibiting 99%-100% nucleotide sequence identities to cognate genes of co-circulating porcine RVA strain ET8B. On the other hand, the VP1 of 08979 appeared to be genetically divergent from porcine and human RVAs within the R1 genotype, and its exact origin could not be ascertained. Taken together, these observations suggested that simian strain 08979 might have been derived from interspecies transmission events involving transmission of ET8B-like RVAs from pigs to AGMs. In St. Kitts, AGMs often stray from the wild into livestock farms. Therefore, it may be possible that the AGM acquired the infection from a pig farm on the island. To our knowledge, this is the first report on detection of porcine-like RVAs in monkeys. Also, the present study is the first to report whole genomic analysis of a porcine RVA strain from the Caribbean region.


Subject(s)
Genome, Viral , Phylogeny , Primate Diseases/epidemiology , RNA, Viral/genetics , Rotavirus Infections/veterinary , Rotavirus/genetics , Swine Diseases/epidemiology , Animals , Base Sequence , Chlorocebus aethiops , Genotype , Primate Diseases/transmission , Primate Diseases/virology , Rotavirus/classification , Rotavirus/isolation & purification , Rotavirus Infections/epidemiology , Rotavirus Infections/transmission , Rotavirus Infections/virology , Sequence Alignment , Swine , Swine Diseases/transmission , Swine Diseases/virology , West Indies/epidemiology
17.
Trends Parasitol ; 32(12): 918-920, 2016 12.
Article in English | MEDLINE | ID: mdl-27743866

ABSTRACT

Relapse may have evolved in malaria as a mechanism to avoid suppression by more virulent species in mixed infections, thereby increasing transmission opportunities. Later evolution of long latency in Plasmodium vivax was a necessary adaptation as early hominins moved to colder areas with shorter mosquito breeding seasons. Genetic diversity was maintained through heterologous hypnozoite activation.


Subject(s)
Host-Parasite Interactions , Malaria, Vivax/parasitology , Primate Diseases/parasitology , Primates , Animals , Biological Evolution , Malaria, Vivax/epidemiology , Malaria, Vivax/pathology , Malaria, Vivax/transmission , Plasmodium vivax/physiology , Primate Diseases/epidemiology , Primate Diseases/pathology , Primate Diseases/transmission , Recurrence
18.
Appl Environ Microbiol ; 82(24): 7165-7175, 2016 12 15.
Article in English | MEDLINE | ID: mdl-27736787

ABSTRACT

Campylobacter is the leading cause of human gastroenteritis worldwide. Wild birds, including American crows, are abundant in urban, suburban, and agricultural settings and are likely zoonotic vectors of Campylobacter Their proximity to humans and livestock increases the potential spreading of Campylobacter via crows between the environment, livestock, and humans. However, no studies have definitively demonstrated that crows are a vector for pathogenic Campylobacter We used genomics to evaluate the zoonotic and pathogenic potential of Campylobacter from crows to other animals with 184 isolates obtained from crows, chickens, cows, sheep, goats, humans, and nonhuman primates. Whole-genome analysis uncovered two distinct clades of Campylobacter jejuni genotypes; the first contained genotypes found only in crows, while a second genotype contained "generalist" genomes that were isolated from multiple host species, including isolates implicated in human disease, primate gastroenteritis, and livestock abortion. Two major ß-lactamase genes were observed frequently in these genomes (oxa-184, 55%, and oxa-61, 29%), where oxa-184 was associated only with crows and oxa-61 was associated with generalists. Mutations in gyrA, indicative of fluoroquinolone resistance, were observed in 14% of the isolates. Tetracycline resistance (tetO) was present in 22% of the isolates, yet it occurred in 91% of the abortion isolates. Virulence genes were distributed throughout the genomes; however, cdtC alleles recapitulated the crow-only and generalist clades. A specific cdtC allele was associated with abortion in livestock and was concomitant with tetO These findings indicate that crows harboring a generalist C. jejuni genotype may act as a vector for the zoonotic transmission of Campylobacter IMPORTANCE: This study examined the link between public health and the genomic variation of Campylobacter in relation to disease in humans, primates, and livestock. Use of large-scale whole-genome sequencing enabled population-level assessment to find new genes that are linked to livestock disease. With 184 Campylobacter genomes, we assessed virulence traits, antibiotic resistance susceptibility, and the potential for zoonotic transfer to observe that there is a "generalist" genotype that may move between host species.


Subject(s)
Bird Diseases/microbiology , Campylobacter Infections/microbiology , Campylobacter Infections/veterinary , Campylobacter/genetics , Primate Diseases/microbiology , Zoonoses/microbiology , Animals , Animals, Wild/microbiology , Bird Diseases/transmission , Birds/microbiology , Campylobacter/classification , Campylobacter/isolation & purification , Campylobacter/physiology , Campylobacter Infections/transmission , Cattle , Genome, Bacterial , Genomics , Genotype , Humans , Livestock/microbiology , Phylogeny , Primate Diseases/transmission , Primates/microbiology , Sheep , Zoonoses/transmission
19.
Int J Parasitol ; 46(11): 737-44, 2016 10.
Article in English | MEDLINE | ID: mdl-27486075

ABSTRACT

Recent studies have revealed a large diversity of Plasmodium spp. among African great apes. Some of these species are related to Plasmodium falciparum, the most virulent agent of human malaria (subgenus Laverania), and others to Plasmodium ovale, Plasmodium malariae and Plasmodium vivax (subgenus Plasmodium), three other human malaria agents. Laverania parasites exhibit strict host specificity in their natural environment. Plasmodium reichenowi, Plasmodium billcollinsi, Plasmodium billbrayi and Plasmodium gaboni infect only chimpanzees, while Plasmodium praefalciparum, Plasmodium blacklocki and Plasmodium adleri are restricted to gorillas and Plasmodium falciparum is pandemic in humans. This host specificity may be due to genetic and/or environmental factors. Infrastructures hosting captive primates, such as sanctuaries and health centres, usually concentrate different primate species, thus favouring pathogen exchanges. Using molecular tools, we analysed blood samples from captive non-human primates living in Gabon to evaluate the risk of Plasmodium spp. transfers between host species. We also included blood samples from workers taking care of primates to assess whether primate-human parasite transfers occurred. We detected four transfers of Plasmodium from gorillas towards chimpanzees, one from chimpanzees to gorillas, three from humans towards chimpanzees and one from humans to mandrills. No simian Plasmodium was found in the blood samples from humans working with primates. These findings demonstrate that the genetic barrier that determines the apparent host specificity of Laverania is not completely impermeable and that parasite exchanges between gorillas and chimpanzees are possible in confined environments.


Subject(s)
Host Specificity , Malaria/parasitology , Plasmodium/physiology , Primate Diseases/parasitology , Animals , Anopheles/parasitology , Cytochromes b/genetics , DNA, Mitochondrial/blood , DNA, Mitochondrial/chemistry , DNA, Mitochondrial/isolation & purification , DNA, Protozoan/blood , DNA, Protozoan/chemistry , DNA, Protozoan/isolation & purification , Ecosystem , Gabon , Genome, Mitochondrial/genetics , Gorilla gorilla/parasitology , Haplorhini/parasitology , Host Specificity/genetics , Humans , Likelihood Functions , Malaria/physiopathology , Malaria/transmission , Mandrillus/parasitology , Mosquito Vectors/parasitology , Pan troglodytes/parasitology , Phylogeny , Plasmodium/classification , Plasmodium/genetics , Primate Diseases/transmission , Primates , Risk Factors , Sequence Analysis, DNA
20.
Infez Med ; 24(2): 93-104, 2016 Jun 01.
Article in English | MEDLINE | ID: mdl-27367318

ABSTRACT

Malaria, the most common parasitic disease in the world, is transmitted to the human host by mosquitoes of the genus Anopheles. The transmission of malaria requires the interaction between the host, the vector and the parasite.The four species of parasites responsible for human malaria are Plasmodium falciparum, Plasmodium ovale, Plasmodium malariae and Plasmodium vivax. Occasionally humans can be infected by several simian species, like Plasmodium knowlesi, recognised as a major cause of human malaria in South-East Asia since 2004. While P. falciparum is responsible for most malaria cases, about 8% of estimated cases globally are caused by P. vivax. The different Plasmodia are not uniformly distributed although there are areas of species overlap. The life cycle of all species of human malaria parasites is characterised by an exogenous sexual phase in which multiplication occurs in several species of Anopheles mosquitoes, and an endogenous asexual phase in the vertebrate host. The time span required for mature oocyst development in the salivary glands is quite variable (7-30 days), characteristic of each species and influenced by ambient temperature. The vector Anopheles includes 465 formally recognised species. Approximately 70 of these species have the capacity to transmit Plasmodium spp. to humans and 41 are considered as dominant vector capable of transmitting malaria. The intensity of transmission is dependent on the vectorial capacity and competence of local mosquitoes. An efficient system for malaria transmission needs strong interaction between humans, the ecosystem and infected vectors. Global warming induced by human activities has increased the risk of vector-borne diseases such as malaria. Recent decades have witnessed changes in the ecosystem and climate without precedent in human history although the emphasis in the role of temperature on the epidemiology of malaria has given way to predisposing conditions such as ecosystem changes, political instability and health policies that have reduced the funds for vector control, combined with the presence of migratory flows from endemic countries.


Subject(s)
Anopheles/parasitology , Climate , Insect Vectors/parasitology , Malaria/transmission , Animals , Anopheles/classification , Climate Change , Disease Reservoirs , Endemic Diseases , Female , Global Health , Hominidae/parasitology , Humans , Life Cycle Stages , Malaria/epidemiology , Malaria/prevention & control , Malaria/veterinary , Plasmodium/classification , Plasmodium/physiology , Population Dynamics , Primate Diseases/epidemiology , Primate Diseases/parasitology , Primate Diseases/transmission , Species Specificity , Urbanization
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