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1.
Molecules ; 26(4)2021 Feb 14.
Article in English | MEDLINE | ID: mdl-33672940

ABSTRACT

Pseudomonas is considered as the specific spoilage bacteria in meat and meat products. The purpose of this study was to evaluate the inactivation efficiency and mechanisms of slightly acidic electrolyzed water (SAEW) against Pseudomonas deceptionensis CM2, a strain isolated from spoiling chicken breast. SAEW caused time-dependent inactivation of P. deceptionensis CM2 cells. After exposure to SAEW (pH 5.9, oxidation-reduction potential of 945 mV, and 64 mg/L of available chlorine concentration) for 60 s, the bacterial populations were reduced by 5.14 log reduction from the initial load of 10.2 log10 CFU/mL. Morphological changes in P. deceptionensis CM2 cells were clearly observed through field emission-scanning electron microscopy as a consequence of SAEW treatment. SAEW treatment also resulted in significant increases in the extracellular proteins and nucleic acids, and the fluorescence intensities of propidium iodide and n-phenyl-1-napthylamine in P. deceptionensis CM2 cells, suggesting the disruption of cytoplasmic and outer membrane integrity. These findings show that SAEW is a promising antimicrobial agent.


Subject(s)
Acids/pharmacology , Cell Membrane/pathology , Electrolysis , Microbial Viability/drug effects , Pseudomonas/drug effects , Water/pharmacology , Cell Membrane/drug effects , Cell Membrane/ultrastructure , Cell Membrane Permeability/drug effects , Cytoplasm/drug effects , Disinfection , Pseudomonas/cytology , Pseudomonas/ultrastructure
2.
Proc Natl Acad Sci U S A ; 118(7)2021 02 16.
Article in English | MEDLINE | ID: mdl-33558227

ABSTRACT

The type VI secretion system (T6SS) is a phage-derived contractile nanomachine primarily involved in interbacterial competition. Its pivotal component, TssA, is indispensable for the assembly of the T6SS sheath structure, the contraction of which propels a payload of effector proteins into neighboring cells. Despite their key function, TssA proteins exhibit unexpected diversity and exist in two major forms, a short form (TssAS) and a long form (TssAL). While TssAL proteins interact with a partner, called TagA, to anchor the distal end of the extended sheath, the mechanism for the stabilization of TssAS-containing T6SSs remains unknown. Here we discover a class of structural components that interact with short TssA proteins and contribute to T6SS assembly by stabilizing the polymerizing sheath from the baseplate. We demonstrate that the presence of these components is important for full sheath extension and optimal firing. Moreover, we show that the pairing of each form of TssA with a different class of sheath stabilization proteins results in T6SS apparatuses that either reside in the cell for some time or fire immediately after sheath extension. We propose that this diversity in firing dynamics could contribute to the specialization of the T6SS to suit bacterial lifestyles in diverse environmental niches.


Subject(s)
Type VI Secretion Systems/metabolism , Protein Stability , Pseudomonas/metabolism , Pseudomonas/ultrastructure , Type VI Secretion Systems/chemistry
3.
PLoS One ; 14(4): e0214744, 2019.
Article in English | MEDLINE | ID: mdl-30946772

ABSTRACT

For combating multidrug-resistant microorganisms, exploration of natural compounds from plant endophytes increases the chance of finding novel compounds. An efficient bioactive metabolites producing endophytic fungal strain AE1 was isolated from leaves of Azadirachta indica A. Juss. The metabolites were found to be thermostable, non-proteinacious and produced prominent zones of inhibition against numbers of Gram positive and Gram negative bacteria. Based on 28S rDNA (D1/D2) sequence homology the isolate AE1 was identified as Alternaria alternata. Malt extract broth was found effective for the maximum production of bioactive metabolites by the isolate and was subjected for solvent extraction. The Ethyl acetate (EA) fraction of AE1 showed MIC values of 300-400 µg/ml against Gram positive and Gram negative bacteria tested. The cidal mode of action of EA fraction was detected by treating bacterial cultures at mid log phase. Scanning electron microscopic study supported morphological disintegration of bacterial cells. Release of nucleic acid, protein and potassium ions (K+) also suggested lysis of bacterial cells or leakage of cell membrane upon treatment. In addition, reduction of the activity of EMP pathway, TCA cycle and gluconeogenic enzymes in all bacteria suggested the interference of antibacterial principles with central carbohydrate metabolic pathways. Thin layer chromatographic separation followed by GC-MS analysis of EA fraction suggested numbers of antimicrobial compound production by AE1. In addition, DPPH free radical as well as superoxide radical scavenging assay also suggested strong antioxidant potential of AE1 with an IC50 value of 38.0±1.7 µg/ml and 11.38±1.2 µg/ml respectively. On the basis of above facts it can be concluded that the strain AE1 will be a good source of bioactive compounds having medicinal importance.


Subject(s)
Alternaria/metabolism , Anti-Bacterial Agents/biosynthesis , Antioxidants/metabolism , Azadirachta/microbiology , Anti-Bacterial Agents/isolation & purification , Anti-Bacterial Agents/pharmacology , Antioxidants/isolation & purification , Antioxidants/pharmacology , Bacillus subtilis/drug effects , Bacillus subtilis/ultrastructure , Endophytes/metabolism , Escherichia coli/drug effects , Escherichia coli/ultrastructure , Free Radical Scavengers/isolation & purification , Free Radical Scavengers/metabolism , Free Radical Scavengers/pharmacology , Gas Chromatography-Mass Spectrometry , Listeria monocytogenes/drug effects , Listeria monocytogenes/ultrastructure , Microbial Sensitivity Tests , Plant Leaves/microbiology , Pseudomonas/drug effects , Pseudomonas/ultrastructure , Salmonella typhimurium/drug effects , Salmonella typhimurium/ultrastructure , Staphylococcus aureus/drug effects , Staphylococcus aureus/ultrastructure , Staphylococcus epidermidis/drug effects , Staphylococcus epidermidis/ultrastructure
4.
PLoS Comput Biol ; 14(12): e1006628, 2018 12.
Article in English | MEDLINE | ID: mdl-30507940

ABSTRACT

Three-dimensional microscopy is increasingly prevalent in biology due to the development of techniques such as multiphoton, spinning disk confocal, and light sheet fluorescence microscopies. These methods enable unprecedented studies of life at the microscale, but bring with them larger and more complex datasets. New image processing techniques are therefore called for to analyze the resulting images in an accurate and efficient manner. Convolutional neural networks are becoming the standard for classification of objects within images due to their accuracy and generalizability compared to traditional techniques. Their application to data derived from 3D imaging, however, is relatively new and has mostly been in areas of magnetic resonance imaging and computer tomography. It remains unclear, for images of discrete cells in variable backgrounds as are commonly encountered in fluorescence microscopy, whether convolutional neural networks provide sufficient performance to warrant their adoption, especially given the challenges of human comprehension of their classification criteria and their requirements of large training datasets. We therefore applied a 3D convolutional neural network to distinguish bacteria and non-bacterial objects in 3D light sheet fluorescence microscopy images of larval zebrafish intestines. We find that the neural network is as accurate as human experts, outperforms random forest and support vector machine classifiers, and generalizes well to a different bacterial species through the use of transfer learning. We also discuss network design considerations, and describe the dependence of accuracy on dataset size and data augmentation. We provide source code, labeled data, and descriptions of our analysis pipeline to facilitate adoption of convolutional neural network analysis for three-dimensional microscopy data.


Subject(s)
Bacteria/classification , Bacteria/ultrastructure , Imaging, Three-Dimensional/methods , Neural Networks, Computer , Algorithms , Animals , Computational Biology , Databases, Factual/statistics & numerical data , Humans , Imaging, Three-Dimensional/statistics & numerical data , Intestines/microbiology , Microscopy, Fluorescence , Pseudomonas/ultrastructure , Support Vector Machine , Vibrio/ultrastructure , Zebrafish/microbiology
5.
Int J Biol Macromol ; 108: 531-540, 2018 Mar.
Article in English | MEDLINE | ID: mdl-29208557

ABSTRACT

We identified that Pseudomonas guguanensis produced macromolecular mono-rhamnolipid (1264.52 Da) upon sensing n-hexadecane/diesel/kerosene from its surroundings. Permutation experiments were done to improve the laboratory-scale mono-rhamnolipid production (ie, a three-fold increase) using RSM validation. Consequently, maximal mono-rhamnolipids production [40-50 mg/L] and emulsification abilities [65-70%] were encountered on day 8 using vegetable oil, peptone + yeast extract. EI24 values for the rhamnolipids were found to be 78±1.75% at 12.5 mg/ mL. Production and secretion of rhamnolipids were accompanied by aggregation of cells at day 6 as pictured in SEM. Pure monorhamnolipids of P. guguanensis was found to lower the surface tension of water to 32.98±0.3 mN/m than the crude and CFSs of P. aeruginosa indicating efficient activity. Utilization and subsequent removal of hexadecane was 77.2% and the breakdown products were fatty acids [decanoic, hexadecanoic, octadecanoic acids and methyl stearates] as signified in Head-space GC-MS. The breakdown products of hexadecane are also present in the synthesized rhamnolipids suggesting their biosynthetic role. Rapid degradation of hexadecane, diesel and kerosene by this emulsifier combined with non-pathogenic trait of P. guguanensis identifies this organism as a viable option to remove n-alkanes from aquatic environments.


Subject(s)
Aquatic Organisms/metabolism , Pseudomonas/metabolism , Rhamnose/analogs & derivatives , Aquatic Organisms/isolation & purification , Aquatic Organisms/ultrastructure , Biotransformation , Decanoates/chemistry , Emulsifying Agents/chemistry , Emulsifying Agents/metabolism , Environmental Pollution , Gas Chromatography-Mass Spectrometry , Hydrocarbons/metabolism , Molecular Structure , Molecular Weight , Palmitic Acid/chemistry , Pseudomonas/isolation & purification , Pseudomonas/ultrastructure , Rhamnose/biosynthesis , Rhamnose/chemistry , Volatile Organic Compounds/chemistry
6.
J Hazard Mater ; 338: 11-22, 2017 Sep 15.
Article in English | MEDLINE | ID: mdl-28531656

ABSTRACT

Three bacterial strains capable of degrading phthalates namely Pseudomonas sp. PKDM2, Pseudomonas sp. PKDE1 and Pseudomonas sp. PKDE2 were isolated and characterized for their degradative potential. These strains efficiently degraded 77.4%-84.4% of DMP, 75.0%-75.7% of DEP and 71.7%-74.7% of DEHP, initial amount of each phthalate is 500mgL-1 of each phthalate, after 44h of incubation. GC-MS results reveal the tentative DEHP degradation pathway, where hydrolases mediate the breakdown of DEHP to phthalic acid (PA) via an intermediate MEHP. MEHP hydrolase is a serine hydrolase which is involved in the reduction of the MEHP to PA. The predicted 3D model of MEHP hydrolase from Pseudomonas mosselii was docked with phthalate monoesters (PMEs) such as MEHP, mono-n-hexyl phthalate (MHP), mono-n-butyl phthalate (MBP) and mono-n-ethyl phthalate (MEP), respectively. Docking results show the distance between the carbonyl carbon of respective phthalate monoester and the hydroxyl group of catalytic serine lies in the range of 2.9 to 3.3Å, which is similar to the ES complex of other serine hydrolases. This structural study highlights the interaction and the role of catalytic residues of MEHP hydrolase involved in the biodegradation of PMEs to phthalate.


Subject(s)
Biodegradation, Environmental , Diethylhexyl Phthalate/analogs & derivatives , Diethylhexyl Phthalate/metabolism , Hydrolases/metabolism , Pseudomonas/metabolism , Soil Pollutants/metabolism , Anti-Bacterial Agents/pharmacology , Catalytic Domain , Computer Simulation , Diethylhexyl Phthalate/chemistry , Esters/chemistry , Gas Chromatography-Mass Spectrometry , Hydrolases/chemistry , Microbial Sensitivity Tests , Microscopy, Electron, Scanning , Molecular Docking Simulation , Molecular Structure , Pseudomonas/enzymology , Pseudomonas/genetics , Pseudomonas/ultrastructure , RNA, Ribosomal, 16S/genetics , Species Specificity
7.
Anal Bioanal Chem ; 409(5): 1441-1449, 2017 Feb.
Article in English | MEDLINE | ID: mdl-27942801

ABSTRACT

High quality spectra of Pseudomonas sp. strain ADP in the planktonic and biofilm state were obtained using Raman microspectroscopy. These spectra enabled the identification of key differences between free and biofilm cells in the fingerprint region of Raman spectra in the nucleic acid, carbohydrate, and protein regions. Scanning electron microscopy (SEM) enabled detailed visualization of ADP biofilm with confirmation of associated extracellular matrix structure. Following extraction and Raman analysis of extracellular polymeric substances, Raman spectral differences between free and biofilm cells were largely attributed to the contribution of extracellular matrix components produced in mature biofilms. Raman spectroscopy complemented with SEM proves to be useful in distinguishing physiological properties among cells of the same species. Graphical Abstract Raman spectroscopy complemented with SEM proves to be useful in distinguishing physiological properties among cells of the same species.


Subject(s)
Biofilms , Microscopy, Electron, Scanning/methods , Pseudomonas/classification , Spectrum Analysis, Raman/methods , Pseudomonas/metabolism , Pseudomonas/ultrastructure
8.
Antonie Van Leeuwenhoek ; 109(11): 1433-1446, 2016 Nov.
Article in English | MEDLINE | ID: mdl-27460204

ABSTRACT

Two bacterial strains, 46-1 and 46-2T, were isolated from garden soil. These strains were observed to be aerobic, Gram-stain negative, rod-shaped, non-spore-forming, motile and catalase and oxidase positive. Phylogenetic analysis based on 16S rRNA gene sequences showed that the two strains shared 100 % sequence similarity with each other and belong to the genus Pseudomonas in the class Gammaproteobacteria. The concatenated 16S rRNA, gyrB, rpoB and rpoD gene sequences further confirmed that the isolates belong to the Pseudomonas koreensis subgroup (SG), with P. koreensis Ps 9-14T, Pseudomonas moraviensis 1B4T and Pseudomonas granadensis F-278,770T as their close relatives (>96 % pairwise similarity). DNA-DNA hybridization with the closely related type strain P. koreensis SG revealed a low level of relatedness (<50 %). A cladogram constructed using whole-cell matrix-assisted laser desorption/ionization time-of-flight (WC-MALDI-TOF) MS analysis showed the isolates formed a completely separate monophyletic group. The isolates were negative for utilization of glycogen, D-psicose, α-keto butyric acid, α-keto valeric acid, succinamic acid and D, L-α-glycerol phosphate. In contrast, all these reactions were positive in P. koreensis JCM 14769T and P. moraviensis DSM 16007T. The fatty acid C17:0 cyclo was detected as one of the major cellular fatty acids (>15 %) in the isolates but it was a minor component (<4 %) in both reference type strains. In contrast, the fatty acid, C12:0 was not observed in the isolates but was present in both reference strains. Based on differences such as phylogenetic position, low-level DNA-DNA hybridization, WC-MALDI-TOF MS analysis, fluorescence pigmentation, fatty acid profiles, and substrate utilization, we propose that the isolates 46-1 and 46-2T represent a novel species of the genus Pseudomonas, for which the name Pseudomonas kribbensis sp. nov. is proposed; the type strain is 46-2T (=KCTC 32541T = DSM 100278T).


Subject(s)
Pseudomonas/isolation & purification , Soil Microbiology , Base Composition , DNA, Bacterial , Gardens , Molecular Typing , Phylogeny , Pseudomonas/classification , Pseudomonas/genetics , Pseudomonas/ultrastructure , RNA, Bacterial , RNA, Ribosomal, 16S/genetics , Republic of Korea
9.
FEMS Microbiol Ecol ; 92(5): fiw034, 2016 May.
Article in English | MEDLINE | ID: mdl-26906096

ABSTRACT

Recently, it has been shown that procyanidins from Fallopia spp. inhibit bacterial denitrification, a phenomenon called biological denitrification inhibition (BDI). However, the mechanisms involved in such a process remain unknown. Here, we investigate the mechanisms of BDI involving procyanidins, using the model strain Pseudomonas brassicacearum NFM 421. The aerobic and anaerobic (denitrification) respiration, cell permeability and cell viability of P. brassicacearum were determined as a function of procyanidin concentration. The effect of procyanidins on the bacterial membrane was observed using transmission electronic microscopy. Bacterial growth, denitrification, NO3- and NO2-reductase activity, and the expression of subunits of NO3- (encoded by the gene narG) and NO2-reductase (encoded by the gene nirS) under NO3 or NO2 were measured with and without procyanidins. Procyanidins inhibited the denitrification process without affecting aerobic respiration at low concentrations. Procyanidins also disturbed cell membranes without affecting cell viability. They specifically inhibited NO3- but not NO2-reductase.Pseudomonas brassicacearum responded to procyanidins by over-expression of the membrane-bound NO3-reductase subunit (encoded by the gene narG). Our results suggest that procyanidins can specifically inhibit membrane-bound NO3-reductase inducing enzymatic conformational changes through membrane disturbance and that P. brassicacearum responds by over-expressing membrane-bound NO3-reductase. Our results lead the way to a better understanding of BDI.


Subject(s)
Denitrification , Fallopia/metabolism , Fallopia/microbiology , Nitrate Reductase/metabolism , Proanthocyanidins/metabolism , Pseudomonas/enzymology , Allosteric Regulation , Biflavonoids , Catechin , Cell Membrane/metabolism , Cell Membrane/ultrastructure , Nitrate Reductase/chemistry , Nitrates/metabolism , Oxidation-Reduction , Oxidoreductases/genetics , Pseudomonas/metabolism , Pseudomonas/ultrastructure
10.
Int J Biol Macromol ; 82: 488-96, 2016 Jan.
Article in English | MEDLINE | ID: mdl-26529191

ABSTRACT

A bacterium strain, designated as CMF-2, was isolated from the jellyfish Cyanea capillata and its culture supernatant exhibited a significant antimicrobial activity. The strain CMF-2 was identified as Pseudomonas sp. based on the morphological, biochemical and physiological characteristics as well as 16S rRNA sequence analysis. In this study, an antimicrobial protein, named as CAP-1, was isolated from the culture of CMF-2 through ammonium sulfate precipitation and gel filtration chromatography. According to the result of sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), a major band indicated that the antimicrobial protein had a molecular mass of about 15 kDa, and it was identified as a hypothetical protein by MALDI-TOF-MS analysis and Mascot searching. CAP-1 displayed a broad antimicrobial spectrum against the indicator bacteria and fungus, including Staphylococcus aureus, Escherichia coli, Bacillus subtilis and Candida albicans, especially some marine-derived microorganisms such as Vibrio vulnificus, Vibrio alginolyticus, Vibrio parahaemolyticus, Vibrio cholera, and Vibrio anguillarum, but showed little impact on tumor cells and normal human cells. The protein CAP-1 remained a stable antimicrobial activity in a wide range of temperature (20-80°C) and pH (2-10) conditions. These results suggested that CAP-1 might have a specific antimicrobial function not due to cytotoxicity.


Subject(s)
Anti-Infective Agents/chemistry , Anti-Infective Agents/pharmacology , Bacterial Proteins/chemistry , Bacterial Proteins/pharmacology , Pseudomonas/metabolism , Amino Acid Sequence , Animals , Anti-Infective Agents/isolation & purification , Bacterial Proteins/biosynthesis , Bacterial Proteins/isolation & purification , Chromatography, Gel , Fermentation , Hemolysis/drug effects , Humans , Hydrogen-Ion Concentration , Microbial Sensitivity Tests , Phylogeny , Pseudomonas/classification , Pseudomonas/genetics , Pseudomonas/isolation & purification , Pseudomonas/ultrastructure , RNA, Ribosomal, 16S/genetics , Scyphozoa/microbiology , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Symbiosis , Temperature
11.
Environ Sci Pollut Res Int ; 23(4): 3517-24, 2016 Feb.
Article in English | MEDLINE | ID: mdl-26490930

ABSTRACT

ZJ0273 (propyl 4-(2-(4, 6-demethoxy pyrimidin-2-yloxy) benzylamino) benzoate) is a novel pyrimidynyloxybenzoic-based herbicide developed in China for oilseed crop. This study was aimed to construct new strains capable of degrading naphthalene and ZJ0273 by protoplast fusion between Amycolatopsis sp. M3-1 and Pseudomonas sp. Nai8. Eight recombinant strains were successfully produced, and the strains could simultaneously utilize ZJ0273 and naphthalene as the sole carbon and energy source, respectively. One of recombinant strains, MN6 with higher degrading efficiency, was chosen for further study. Under the condition of pH 7.0, 30 °C, ZJ0273 and naphthalene degradation percent by the recombinant strain MN6 could reach 65.10% (20 days) and 88.46% (48 h), respectively. According to the identified six metabolites (M1-M6) by LC-MS/MS, biodegradation pathway of ZJ0273 was proposed. ZJ0273 biodegradation catalyzed by the recombinant strain MN6 involved continuous biocatalytic reactions such as de-estering, hydrolysis, acylation, C-N cleavage, de-methyl, and ether cleavage reactions.


Subject(s)
Actinobacteria/growth & development , Benzoates/analysis , Environmental Pollutants/analysis , Herbicides/analysis , Naphthalenes/analysis , Pseudomonas/growth & development , Actinobacteria/genetics , Actinobacteria/ultrastructure , Biodegradation, Environmental , China , Environmental Pollutants/chemistry , Herbicides/chemistry , Microscopy, Electron, Scanning , Molecular Structure , Naphthalenes/chemistry , Protoplasts/ultrastructure , Pseudomonas/genetics , Pseudomonas/ultrastructure , Tandem Mass Spectrometry
12.
Sci Rep ; 5: 17163, 2015 Nov 23.
Article in English | MEDLINE | ID: mdl-26592442

ABSTRACT

Microbial communities are ubiquitous in both natural and artificial environments. However, microbial diversity is usually reduced under strong selection pressures, such as those present in habitats rich in recalcitrant or toxic compounds displaying antimicrobial properties. Caffeine is a natural alkaloid present in coffee, tea and soft drinks with well-known antibacterial properties. Here we present the first systematic analysis of coffee machine-associated bacteria. We sampled the coffee waste reservoir of ten different Nespresso machines and conducted a dynamic monitoring of the colonization process in a new machine. Our results reveal the existence of a varied bacterial community in all the machines sampled, and a rapid colonisation process of the coffee leach. The community developed from a pioneering pool of enterobacteria and other opportunistic taxa to a mature but still highly variable microbiome rich in coffee-adapted bacteria. The bacterial communities described here, for the first time, are potential drivers of biotechnologically relevant processes including decaffeination and bioremediation.


Subject(s)
Coffee/microbiology , Microbial Consortia/genetics , RNA, Ribosomal, 16S/genetics , Adaptation, Physiological , Agrobacterium/classification , Agrobacterium/genetics , Agrobacterium/ultrastructure , Anti-Bacterial Agents/pharmacology , Biodegradation, Environmental , Biodiversity , Caffeine/pharmacology , Enterobacteriaceae/classification , Enterobacteriaceae/genetics , Enterobacteriaceae/ultrastructure , Enterococcus/classification , Enterococcus/genetics , Enterococcus/ultrastructure , Food Handling/instrumentation , Microbial Consortia/drug effects , Microscopy, Electron, Scanning , Paenibacillus/classification , Paenibacillus/genetics , Paenibacillus/ultrastructure , Pseudomonas/classification , Pseudomonas/genetics , Pseudomonas/ultrastructure , Sequence Analysis, DNA
13.
J Fish Dis ; 37(2): 113-21, 2014 Feb.
Article in English | MEDLINE | ID: mdl-25254273

ABSTRACT

An enzootic disease characterized by granulomas in internal organs occurred in cage-farmed large yellow croaker, Larimichthys crocea (Richardson), in April and November 2010, in Ningbo, Zhejiang Province. One bacterial strain, named XSDHY-P, was isolated from the diseased fish and identified by biochemical characterization, fatty acid methyl ester (FAME) analysis and multilocus sequence analysis (MLSA). According to the results obtained from the biochemical tests, FAME analysis and phylogenetic analysis derived from 16S ribosomal RNA, gyrB, oprF, oprI, oprL and rpoD gene sequencing, the bacterial isolate, XSDHY-P, was identified as Pseudomonas plecoglossicida. Moreover, lethal dose, 50% trials were carried out to demonstrate the virulence of XSDHY-P in large yellow croaker when administered at 2.13 9 105 colony-forming units per fish. Visceral granulomas were found in the experimentally infected fish as well as in the naturally infected fish, indicating that P. plecoglossicida is another bacterial pathogen that causes granulomatosis in L. crocea.


Subject(s)
Fish Diseases/microbiology , Granuloma/veterinary , Perciformes/physiology , Pseudomonas/physiology , Animals , Fish Diseases/mortality , Granuloma/microbiology , Granuloma/mortality , Multilocus Sequence Typing , Phylogeny , Pseudomonas/classification , Pseudomonas/genetics , Pseudomonas/ultrastructure , RNA, Ribosomal, 16S/genetics
14.
BMC Microbiol ; 14: 163, 2014 Jun 20.
Article in English | MEDLINE | ID: mdl-24946855

ABSTRACT

BACKGROUND: Pseudomonas tolaasii is a problematic pathogen of cultured mushrooms, forming dark brown 'blotches' on mushroom surfaces and causing spoilage during crop growth and post-harvest . Treating P. tolaasii infection is difficult, as other, commensal bacterial species such as Pseudomonas putida are necessary for mushroom growth, so treatments must be relatively specific. RESULTS: We have found that P. tolaasii is susceptible to predation in vitro by the δ-proteobacterium Bdellovibrio bacteriovorus. This effect also occurred in funga, where B. bacteriovorus was administered to post-harvest mushroom caps before and after administration of the P. tolaasii pathogen. A significant, visible improvement in blotch appearance, after incubation, was observed on administration of Bdellovibrio. A significant reduction in viable P. tolaasii cell numbers, recovered from the mushroom tissue, was detected. This was accompanied by a more marked reduction in blotch severity on Bdellovibrio administration. We found that there was in some cases an accompanying overgrowth of presumed-commensal, non-Pseudomonas bacteria on post-harvest mushroom caps after Bdellovibrio-treatment. These bacteria were identified (by 16SrRNA gene sequencing) as Enterobacter species, which were seemingly resistant to predation. We visualised predatory interactions occuring between B. bacteriovorus and P. tolaasii on the post-harvest mushroom cap surface by Scanning Electron Microscopy, seeing predatory invasion of P. tolaasii by B. bacteriovorus in funga. This anti-P. tolaasii effect worked well in post-harvest supermarket mushrooms, thus Bdellovibrio was not affected by any pre-treatment of mushrooms for commercial/consumer purposes. CONCLUSIONS: The soil-dwelling B. bacteriovorus HD100 preys upon and kills P. tolaasii, on mushroom surfaces, and could therefore be applied to prevent spoilage in post-harvest situations where mushrooms are stored and packaged for sale.


Subject(s)
Agaricus , Antibiosis , Bdellovibrio/growth & development , Pseudomonas/growth & development , Bdellovibrio/physiology , Bdellovibrio/ultrastructure , Microbial Viability , Microscopy, Electron, Scanning , Pseudomonas/physiology , Pseudomonas/ultrastructure
15.
Int J Mol Sci ; 14(11): 21965-82, 2013 Nov 06.
Article in English | MEDLINE | ID: mdl-24201127

ABSTRACT

The detachment of single cells from biofilms is an intrinsic part of this surface-associated mode of bacterial existence. Pseudomonas sp. strain CT07gfp biofilms, cultivated in microfluidic channels under continuous flow conditions, were subjected to a range of liquid shear stresses (9.42 mPa to 320 mPa). The number of detached planktonic cells was quantified from the effluent at 24-h intervals, while average biofilm thickness and biofilm surface area were determined by confocal laser scanning microscopy and image analysis. Biofilm accumulation proceeded at the highest applied shear stress, while similar rates of planktonic cell detachment was maintained for biofilms of the same age subjected to the range of average shear rates. The conventional view of liquid-mediated shear leading to the passive erosion of single cells from the biofilm surface, disregards the active contribution of attached cell metabolism and growth to the observed detachment rates. As a complement to the conventional conceptual biofilm models, the existence of a biofilm surface-associated zone of planktonic cell proliferation is proposed to highlight the need to expand the traditional perception of biofilms as promoting microbial survival, to include the potential of biofilms to contribute to microbial proliferation.


Subject(s)
Biofilms/growth & development , Plankton/growth & development , Pseudomonas/growth & development , Cell Proliferation , Microscopy, Confocal , Plankton/microbiology , Plankton/ultrastructure , Pseudomonas/ultrastructure , Stress, Mechanical
16.
PLoS One ; 8(10): e76685, 2013.
Article in English | MEDLINE | ID: mdl-24146909

ABSTRACT

Pseudomonas extremaustralis is a versatile Antarctic bacterium, able to grow under microaerobic and anaerobic conditions and is related to several non-pathogenic Pseudomonads. Here we report on the role of the global anaerobic regulator Anr, in the early steps of P. extremaustralis biofilm development. We found that the anr mutant was reduced in its ability to attach, to form aggregates and to display twitching motility but presented higher swimming motility than the wild type. In addition, microscopy revealed that the wild type biofilm contained more biomass and was thicker, but were less rough than that of the anr mutant. In silico analysis of the P. extremaustralis genome for Anr-like binding sites led to the identification of two biofilm-related genes as potential targets of this regulator. When measured using Quantitative Real Time PCR, we found that the anr mutant expressed lower levels of pilG, which encodes a component of Type IV pili and has been previously implicated in cellular adhesion. Levels of morA, involved in signal transduction and flagella development, were also lower in the mutant. Our data suggest that under low oxygen conditions, such as those encountered in biofilms, Anr differentially regulates aggregation and motility thus affecting the first stages of biofilm formation.


Subject(s)
Bacterial Adhesion/physiology , Bacterial Proteins/metabolism , Biofilms/growth & development , Pseudomonas/cytology , Pseudomonas/physiology , Aerobiosis , Anaerobiosis , Base Sequence , DNA, Intergenic/genetics , Gene Expression Regulation, Bacterial , Genes, Bacterial/genetics , Molecular Sequence Data , Movement , Mutation/genetics , Pseudomonas/genetics , Pseudomonas/ultrastructure
17.
PLoS One ; 8(9): e73297, 2013.
Article in English | MEDLINE | ID: mdl-24039905

ABSTRACT

In recent years, improvements in transmission electron microscopy (TEM) techniques and the use of tomography have provided a more accurate view of the complexity of the ultrastructure of prokaryotic cells. Cryoimmobilization of specimens by rapid cooling followed by freeze substitution (FS) and sectioning, freeze fracture (FF) and observation of replica, or cryoelectron microscopy of vitreous sections (CEMOVIS) now allow visualization of biological samples close to their native state, enabling us to refine our knowledge of already known bacterial structures and to discover new ones. Application of these techniques to the new Antarctic cold-adapted bacterium Pseudomonasdeceptionensis M1(T) has demonstrated the existence of a previously undescribed cytoplasmic structure that does not correspond to known bacterial inclusion bodies or membranous formations. This structure, which we term a "stack", was mainly visualized in slow growing cultures of P. deceptionensis M1(T) and can be described as a set of stacked membranous discs usually arranged perpendicularly to the cell membrane, but not continuous with it, and found in variable number in different locations within the cell. Regardless of their position, stacks were mostly observed very close to DNA fibers. Stacks are not exclusive to P. deceptionensis M1(T) and were also visualized in slow-growing cultures of other bacteria. This new structure deserves further study using cryoelectron tomography to refine its configuration and to establish whether its function could be related to chromosome dynamics.


Subject(s)
Microscopy, Electron, Transmission/methods , Pseudomonas/ultrastructure , Antarctic Regions , Freeze Fracturing , Tomography, X-Ray Computed
18.
J Environ Sci (China) ; 25(3): 613-25, 2013 Mar 01.
Article in English | MEDLINE | ID: mdl-23923436

ABSTRACT

We report on the biodegradation of pure hydrocarbons and chemotaxis towards these compounds by an isolated chlorophenol degrader, Pseudomonas strain H. The biochemical and phylogenetic analysis of the 16S rDNA sequence identified Pseudomonas strain H as having 99.56% similarity with P. aeruginosa PA01. This strain was able to degrade n-hexadecane, 1-undecene, 1-nonene, 1-decene, 1-dodecene and kerosene. It grew in the presence of 1-octene, while this hydrocarbons is toxic to other hydrocarbons degraders. Pseudomonas strain H was also chemotactic towards n-hexadecane, kerosene, 1-undecene and 1-dodecene. These results show that this Pseudomonas strain H is an attractive candidate for hydrocarbon-containing wastewater bioremediation in controlled environments. Since the classical standard techniques for detecting chemotaxis are not efficient at low bacterial concentrations, we demonstrate the use of the dynamic speckle laser method, which is simple and inexpensive, to confirm bacterial chemotaxis at low cell concentrations (less than 10(5) colony-forming unit per millilitre (CFU/mL)) when hydrocarbons are the attractants.


Subject(s)
Chemotaxis/drug effects , Hydrocarbons/pharmacology , Lasers , Pseudomonas/drug effects , Pseudomonas/metabolism , Biodegradation, Environmental/drug effects , Carbon/pharmacology , Extracellular Space/chemistry , Pseudomonas/growth & development , Pseudomonas/ultrastructure , Surface-Active Agents/pharmacology
19.
Mikrobiol Z ; 75(2): 67-71, 2013.
Article in Russian | MEDLINE | ID: mdl-23720966

ABSTRACT

Variability of properties and antibiotic activity, as well as cells survival of Pseudomonas batumici 17/20--the producer of batumin (antistaphylococcal antibiotic) after long-term storage under vaseline oil layer have been studied. The main culture-morphological and physiological biochemical properties of the mutant strain have been investigated. It has been shown that storage under vaseline oil allows to preserve high level of antibiotic activity: batumin synthesis by the producer was 150 mg/l. Therewith, the survival of cells decreases by two orders during 5 years of storage. The conditions of strain maintenance have been formulated.


Subject(s)
Anti-Bacterial Agents/biosynthesis , Mineral Oil/pharmacology , Protective Agents/pharmacology , Pseudomonas/drug effects , Pseudomonas/metabolism , Culture Media , Microbial Sensitivity Tests , Microbial Viability , Microscopy, Electron , Mutation , Organic Chemicals/metabolism , Preservation, Biological/methods , Pseudomonas/growth & development , Pseudomonas/ultrastructure
20.
Bioresour Technol ; 134: 36-42, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23500557

ABSTRACT

An iopromide (IOPr)-degrading bacterium was isolated from activated sludge of a wastewater treatment plant in Shanghai. Based on its morphology, physiological-biochemical characteristics and a phylogenetic analysis of its 16S rRNA sequence, the bacterium was identified and named as Pseudomonas sp. I-24. The optimum condition for degrading IOPr was at 30°C and pH 7.0. After 5 days, strain I-24 could degrade 30 mg/L IOPr by 99% in a basal salts medium with a 5% (V/V) inoculum and 200 mg/L starch as the primary substrate. When applied to an Anaerobic-Anoxic/Aerobic (A2/O) process, with the coexistence of other bacteria, the strain I-24 got lower (61.3%) IOPr removal, but in two A2/O systems (with and without I-24 inoculation), the CODcr removal were both approximately 95%. The trial dosed with strain I-24 showed better IOPr removal than the un-dosed one. I-24 sustained its abundance in the A2/O system during the experiment.


Subject(s)
Iohexol/analogs & derivatives , Pseudomonas/isolation & purification , Aerobiosis , Anaerobiosis , Biodegradation, Environmental , Biological Oxygen Demand Analysis , Bioreactors/microbiology , Colony Count, Microbial , Denaturing Gradient Gel Electrophoresis , Iohexol/metabolism , Kinetics , Molecular Sequence Data , Phylogeny , Pseudomonas/enzymology , Pseudomonas/growth & development , Pseudomonas/ultrastructure , RNA, Ribosomal, 16S/genetics , Sewage/microbiology , Wastewater/microbiology , Water Purification
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